Query 034236
Match_columns 100
No_of_seqs 106 out of 515
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 11:16:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034236.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034236hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3466 NADH:ubiquinone oxidor 100.0 3.6E-31 7.8E-36 185.8 9.6 91 6-97 1-91 (157)
2 PF05347 Complex1_LYR: Complex 99.6 4.4E-16 9.5E-21 93.5 6.5 57 19-78 1-59 (59)
3 PF13232 Complex1_LYR_1: Compl 99.6 5.3E-15 1.1E-19 90.0 6.7 58 19-79 1-60 (61)
4 KOG3801 Uncharacterized conser 99.6 9.5E-15 2.1E-19 96.2 7.2 63 15-80 3-67 (94)
5 KOG4620 Uncharacterized conser 99.4 4.7E-12 1E-16 80.6 7.6 69 13-84 3-74 (80)
6 KOG3426 NADH:ubiquinone oxidor 99.3 5.5E-12 1.2E-16 86.3 6.9 67 14-80 19-89 (124)
7 PF13233 Complex1_LYR_2: Compl 97.6 0.00026 5.6E-09 46.6 6.4 56 21-76 1-66 (104)
8 KOG4100 Uncharacterized conser 96.7 0.0085 1.8E-07 41.4 6.2 56 17-76 8-64 (125)
9 PF04716 ETC_C1_NDUFA5: ETC co 91.0 1.4 3E-05 26.6 5.8 53 17-69 3-55 (57)
10 KOG0723 Molecular chaperone (D 53.2 40 0.00088 23.1 4.7 36 48-84 53-88 (112)
11 KOG3850 Predicted membrane pro 53.0 24 0.00051 29.3 4.1 44 43-88 79-125 (455)
12 PF03622 IBV_3B: IBV 3B protei 49.1 15 0.00033 22.7 1.9 19 81-99 33-51 (64)
13 COG5319 Uncharacterized protei 45.8 1E+02 0.0022 21.9 5.9 74 1-74 48-130 (142)
14 KOG3124 Pyrroline-5-carboxylat 44.2 21 0.00047 27.9 2.5 32 64-95 202-234 (267)
15 PF01724 DUF29: Domain of unkn 43.4 53 0.0011 22.8 4.2 46 47-92 79-126 (139)
16 PF09164 VitD-bind_III: Vitami 35.0 1.1E+02 0.0025 19.1 4.3 30 42-71 11-40 (68)
17 KOG0489 Transcription factor z 33.9 41 0.00088 25.6 2.6 38 42-79 167-206 (261)
18 KOG0810 SNARE protein Syntaxin 33.0 2.4E+02 0.0053 22.2 6.9 59 18-76 122-182 (297)
19 PF04695 Pex14_N: Peroxisomal 31.1 45 0.00097 22.9 2.2 27 49-76 25-51 (136)
20 PF10363 DUF2435: Protein of u 29.8 1.6E+02 0.0034 19.0 4.8 57 24-88 4-61 (92)
21 KOG4263 Putative receptor CCR1 28.5 2.2E+02 0.0048 22.5 5.8 44 16-62 52-95 (299)
22 PHA02571 a-gt.4 hypothetical p 28.4 2E+02 0.0043 19.7 7.7 60 16-80 41-100 (109)
23 PRK12513 RNA polymerase sigma 27.1 1.7E+02 0.0036 20.3 4.7 10 1-10 2-11 (194)
24 KOG0713 Molecular chaperone (D 22.2 53 0.0011 26.5 1.4 21 70-92 34-54 (336)
25 PF10241 KxDL: Uncharacterized 21.6 2.3E+02 0.0049 18.0 7.1 66 16-85 18-88 (88)
26 PF06676 DUF1178: Protein of u 21.0 2.1E+02 0.0045 20.4 4.2 59 18-76 76-138 (148)
27 PRK04387 hypothetical protein; 20.8 2.1E+02 0.0047 18.8 3.9 48 18-73 36-83 (90)
No 1
>KOG3466 consensus NADH:ubiquinone oxidoreductase, NDUFB9/B22 subunit [Energy production and conversion]
Probab=99.97 E-value=3.6e-31 Score=185.82 Aligned_cols=91 Identities=44% Similarity=0.699 Sum_probs=89.3
Q ss_pred hhHHHhhccHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhCCCCC
Q 034236 6 STAAYVARRAAQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNKWRHPDPY 85 (100)
Q Consensus 6 ~~~~~~~~~~~~r~~Vl~LYR~~LR~~~~~~~~r~~~r~~a~~iR~eFe~nk~vtD~~~I~~Ll~~G~~~L~~~~Hp~p~ 85 (100)
|||+++++.++|+++|++|||++||...+|++.|+.+|+.++.||++|++|++ +|..++..||.+|+++|+++.||+||
T Consensus 1 s~a~~f~~~lshkqkV~rLYKRaLR~lenWy~~rn~yRy~ac~~RARFden~~-kD~~k~~~LLa~ge~E~w~~rHpqP~ 79 (157)
T KOG3466|consen 1 STAAYFARRLSHKQKVRRLYKRALRDLENWYVHRNIYRYQACIIRARFDENDE-KDVDKAIRLLAEGERELWEWRHPQPY 79 (157)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 68999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred cCCCCCCCcccc
Q 034236 86 IGKCFCTGSKHR 97 (100)
Q Consensus 86 ~~~~~pgG~~y~ 97 (100)
+||++||||+|+
T Consensus 80 ifp~spGGssy~ 91 (157)
T KOG3466|consen 80 IFPDSPGGSSYE 91 (157)
T ss_pred ccCCCCCCCccc
Confidence 999999999996
No 2
>PF05347 Complex1_LYR: Complex 1 protein (LYR family); InterPro: IPR008011 This family of short proteins includes proteins from the NADH-ubiquinone oxidoreductase complex I. The family includes the B14 subunit from bovine NADH-ubiquinone oxidoreductase B14 subunit Q02366 from SWISSPROT, and the B22 subunit from the human enzyme Q9Y6M9 from SWISSPROT. The family has been named LYR after a highly conserved tripeptide motif close to the N terminus of these proteins. Members of this family also found in yeast which do contain this complex. In these organisms they are believed to be be required for iron-sulphur custer biogenesis.
Probab=99.65 E-value=4.4e-16 Score=93.52 Aligned_cols=57 Identities=25% Similarity=0.476 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHhhhhhhh--HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Q 034236 19 ERVQILYRRALKDTLNWAVH--RHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNK 78 (100)
Q Consensus 19 ~~Vl~LYR~~LR~~~~~~~~--r~~~r~~a~~iR~eFe~nk~vtD~~~I~~Ll~~G~~~L~~ 78 (100)
++||+|||++||.++.|++. +..++ ..||++|++|++++||..|+.++.+|++.|++
T Consensus 1 q~vl~LYR~lLR~~~~~~~~~~r~~~~---~~iR~~Fr~n~~~~d~~~I~~~l~~g~~~l~~ 59 (59)
T PF05347_consen 1 QRVLSLYRQLLRAARSFPDDSEREYIR---AEIRQEFRKNRNETDPEKIEELLKKGEEELEM 59 (59)
T ss_pred ChHHHHHHHHHHHHHHcCCcchHHHHH---HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcC
Confidence 57999999999999888754 34443 68999999999999999999999999999975
No 3
>PF13232 Complex1_LYR_1: Complex1_LYR-like
Probab=99.59 E-value=5.3e-15 Score=89.96 Aligned_cols=58 Identities=29% Similarity=0.501 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHhhhhhh--hHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 034236 19 ERVQILYRRALKDTLNWAV--HRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNKW 79 (100)
Q Consensus 19 ~~Vl~LYR~~LR~~~~~~~--~r~~~r~~a~~iR~eFe~nk~vtD~~~I~~Ll~~G~~~L~~~ 79 (100)
++||+|||++||++..|++ .+..++ .+||++|++|++++||..|+.++++|+.+|..+
T Consensus 1 ~~vL~LYR~lLR~~~~~~~~~~r~~~~---~~ir~~Fr~~~~~td~~~i~~~l~~~~~~L~~l 60 (61)
T PF13232_consen 1 QQVLSLYRQLLREASKFPDYNFRSYFR---RRIRDRFRRNKNVTDPEKIAKLLKEGRKELELL 60 (61)
T ss_pred ChHHHHHHHHHHHhhhcCCcchHHHHH---HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHc
Confidence 4799999999999998874 443443 689999999999999999999999999999875
No 4
>KOG3801 consensus Uncharacterized conserved protein BCN92 [RNA processing and modification]
Probab=99.57 E-value=9.5e-15 Score=96.22 Aligned_cols=63 Identities=25% Similarity=0.362 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh--hHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhh
Q 034236 15 AAQKERVQILYRRALKDTLNWAV--HRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNKWR 80 (100)
Q Consensus 15 ~~~r~~Vl~LYR~~LR~~~~~~~--~r~~~r~~a~~iR~eFe~nk~vtD~~~I~~Ll~~G~~~L~~~~ 80 (100)
+.++++|++|||.+||+++.++. +|++ ..+++|+.|++|++++||.+|+.++++|+++|+.++
T Consensus 3 ~~sr~qvlsLyr~~lr~s~qfp~YNyReY---~~RrtRD~Fr~Nkn~~Dp~e~~~l~~eakk~Levik 67 (94)
T KOG3801|consen 3 MVSRRQVLSLYRNLLRESKQFPQYNYREY---FQRRTRDTFRANKNVCDPAEIKKLYKEAKKQLEVIK 67 (94)
T ss_pred cccHHHHHHHHHHHHHHHhhCCcccHHHH---HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999999988764 4444 347999999999999999999999999999999775
No 5
>KOG4620 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=4.7e-12 Score=80.62 Aligned_cols=69 Identities=14% Similarity=0.236 Sum_probs=58.4
Q ss_pred ccHHHHHHHHHHHHHHHHHhhhhhh-hHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHHHHhhCCCC
Q 034236 13 RRAAQKERVQILYRRALKDTLNWAV-HRHLFYKDADDLRLRFEANKHV--TDLDAIDRMIDEAEATYNKWRHPDP 84 (100)
Q Consensus 13 ~~~~~r~~Vl~LYR~~LR~~~~~~~-~r~~~r~~a~~iR~eFe~nk~v--tD~~~I~~Ll~~G~~~L~~~~Hp~p 84 (100)
+....++|||+|||.|||.++..+. +...|. ..|++||++|+++ +|.-.|+.||..|+++++...||.-
T Consensus 3 rlSgLQrqVlhlYR~~lraa~~Kp~~~~~~~m---~fvh~EFrk~~~lpr~Df~~IEhLlRvG~rq~~~~s~pe~ 74 (80)
T KOG4620|consen 3 RLSGLQRQVLHLYRDLLRAARGKPGAEARRWM---AFVHAEFRKHAGLPRSDFLRIEHLLRVGRRQLQLLSSPEA 74 (80)
T ss_pred chhHHHHHHHHHHHHHHHHhcCCCchHHHHHH---HHHHHHHHHhcCCcHhHHHHHHHHHHHhHHHHHHhcCcch
Confidence 4456899999999999999986553 333454 5789999999999 5999999999999999999999964
No 6
>KOG3426 consensus NADH:ubiquinone oxidoreductase, NDUFA6/B14 subunit [Energy production and conversion]
Probab=99.32 E-value=5.5e-12 Score=86.28 Aligned_cols=67 Identities=24% Similarity=0.269 Sum_probs=55.4
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhhhHHH----HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhh
Q 034236 14 RAAQKERVQILYRRALKDTLNWAVHRHL----FYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNKWR 80 (100)
Q Consensus 14 ~~~~r~~Vl~LYR~~LR~~~~~~~~r~~----~r~~a~~iR~eFe~nk~vtD~~~I~~Ll~~G~~~L~~~~ 80 (100)
..+.|++|+.|||.+.|....+..+.+. ..+...+||++|.+|.|+|||.+|+.|+-+|.++|++.-
T Consensus 19 ~~EARrrvl~~yra~~R~iP~~~~dy~L~dm~~~~~R~~ir~qf~kn~hvTD~rViDlLV~kg~~elkeiv 89 (124)
T KOG3426|consen 19 LTEARRRVLDLYRAWYRSIPTIVDDYNLQDMTVSQLRDKIREQFRKNAHVTDPRVIDLLVIKGMEELKEIV 89 (124)
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHhcCCcccCHHHHHHHHHHHHHhcCCcCCchhhhHHHHhhHHHHHHHH
Confidence 4579999999999999999876554432 122335899999999999999999999999999998754
No 7
>PF13233 Complex1_LYR_2: Complex1_LYR-like
Probab=97.63 E-value=0.00026 Score=46.55 Aligned_cols=56 Identities=20% Similarity=0.279 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhhhhhhhHHH------HHHHHHHH----HHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 034236 21 VQILYRRALKDTLNWAVHRHL------FYKDADDL----RLRFEANKHVTDLDAIDRMIDEAEATY 76 (100)
Q Consensus 21 Vl~LYR~~LR~~~~~~~~r~~------~r~~a~~i----R~eFe~nk~vtD~~~I~~Ll~~G~~~L 76 (100)
|++|||.+||+.+.++..... ....-..| +++|+.+++++|+..+...+.+.+.-+
T Consensus 1 V~~lYR~lLRel~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ef~~~~~~~~~~~~~~~~~~~~~y~ 66 (104)
T PF13233_consen 1 VLSLYRSLLRELRRYPRRSKIHQLKAPRSPGDQYVLEQARAEFRRHKSANDEEEAQEFLQEWENYA 66 (104)
T ss_pred ChHHHHHHHHHHHhhcchhhhhhhhchhHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHH
Confidence 799999999999877533210 01112467 999999999997776666666555433
No 8
>KOG4100 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.0085 Score=41.39 Aligned_cols=56 Identities=23% Similarity=0.258 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhh-HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 034236 17 QKERVQILYRRALKDTLNWAVH-RHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATY 76 (100)
Q Consensus 17 ~r~~Vl~LYR~~LR~~~~~~~~-r~~~r~~a~~iR~eFe~nk~vtD~~~I~~Ll~~G~~~L 76 (100)
|-.+|.-|||++||.=+--+.. |..-- ..+|+||+.||++ +|..++-.+.+=+.-.
T Consensus 8 ~p~rvrlLYkriLrlHr~lp~~~R~lGD---~YVkdEFrrHk~v-np~~~~~FlteW~~Ya 64 (125)
T KOG4100|consen 8 HPPRVRLLYKRILRLHRGLPAELRALGD---QYVKDEFRRHKTV-NPLEAQGFLTEWERYA 64 (125)
T ss_pred CcchHHHHHHHHHHHHccCChHHHHHHH---HHHHHHHHHhccC-ChHHHHHHHHHHHHHH
Confidence 4456777999999998765542 33322 3689999999999 8888888877655443
No 9
>PF04716 ETC_C1_NDUFA5: ETC complex I subunit conserved region; InterPro: IPR006806 This is a family of eukaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC) (1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 29.9 kDa protein. The conserved region is found at the N terminus of the member proteins [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022904 respiratory electron transport chain, 0005743 mitochondrial inner membrane
Probab=91.00 E-value=1.4 Score=26.59 Aligned_cols=53 Identities=17% Similarity=0.213 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 034236 17 QKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMI 69 (100)
Q Consensus 17 ~r~~Vl~LYR~~LR~~~~~~~~r~~~r~~a~~iR~eFe~nk~vtD~~~I~~Ll 69 (100)
.+.....||.+.|+....++.+..+.++.-..++.++.--+...|.++|+..|
T Consensus 3 pr~~L~~lY~~~L~~L~~~P~~a~YR~~tE~it~~Rl~iv~~~~d~~~iE~~i 55 (57)
T PF04716_consen 3 PREALISLYNKTLKALKKIPEDAAYRQYTEAITKHRLKIVEEEEDIEKIEKKI 55 (57)
T ss_pred hHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHccccHHHHHHHh
Confidence 35677899999999998776543333333347788888878889999988765
No 10
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=53.20 E-value=40 Score=23.08 Aligned_cols=36 Identities=25% Similarity=0.050 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhCCCC
Q 034236 48 DLRLRFEANKHVTDLDAIDRMIDEAEATYNKWRHPDP 84 (100)
Q Consensus 48 ~iR~eFe~nk~vtD~~~I~~Ll~~G~~~L~~~~Hp~p 84 (100)
..|.|=..--+|+ |..-+..++++.+.+-...|||-
T Consensus 53 Msr~EA~lIL~v~-~s~~k~KikeaHrriM~~NHPD~ 88 (112)
T KOG0723|consen 53 MSRREAALILGVT-PSLDKDKIKEAHRRIMLANHPDR 88 (112)
T ss_pred cchHHHHHHhCCC-ccccHHHHHHHHHHHHHcCCCcC
Confidence 3444444555666 66667888999999999999986
No 11
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=53.04 E-value=24 Score=29.32 Aligned_cols=44 Identities=7% Similarity=0.156 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHHHHHHhhCCCCCcCC
Q 034236 43 YKDADDLRLRFEANKHVT---DLDAIDRMIDEAEATYNKWRHPDPYIGK 88 (100)
Q Consensus 43 r~~a~~iR~eFe~nk~vt---D~~~I~~Ll~~G~~~L~~~~Hp~p~~~~ 88 (100)
+.++.+|++-||+ +|-+ ....+++-|.+-+++|.++. -.|+++|
T Consensus 79 k~Q~~rIkq~FEk-kNqksahtiaqlqkkL~~y~~rLkeie-ng~~r~s 125 (455)
T KOG3850|consen 79 KQQVARIKQVFEK-KNQKSAHTIAQLQKKLEQYHRRLKEIE-NGESRPS 125 (455)
T ss_pred hhhhHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCCCC
Confidence 4556799999987 3333 35667788899999999998 5666654
No 12
>PF03622 IBV_3B: IBV 3B protein ; InterPro: IPR005295 These proteins are the product of ORF 3B from Infectious bronchitis virus). Currently, the function of this protein remains unknown [].
Probab=49.05 E-value=15 Score=22.65 Aligned_cols=19 Identities=26% Similarity=0.181 Sum_probs=16.9
Q ss_pred CCCCCcCCCCCCCcccccc
Q 034236 81 HPDPYIGKCFCTGSKHRIL 99 (100)
Q Consensus 81 Hp~p~~~~~~pgG~~y~~~ 99 (100)
-.||+-+|+.-||+-|+|.
T Consensus 33 iFDPFE~cyyrgGsfwEie 51 (64)
T PF03622_consen 33 IFDPFEVCYYRGGSFWEIE 51 (64)
T ss_pred hcCCeeEEEEecCcEEEee
Confidence 4799999999999999874
No 13
>COG5319 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.78 E-value=1e+02 Score=21.85 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=44.3
Q ss_pred CcchhhhHHHhh-c----cHHHHHHHHHHHHHHHHHhhhhhhhH-HHHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHH
Q 034236 1 MSGAISTAAYVA-R----RAAQKERVQILYRRALKDTLNWAVHR-HLFYKDADDLRLRFEANKHV---TDLDAIDRMIDE 71 (100)
Q Consensus 1 ~~~~~~~~~~~~-~----~~~~r~~Vl~LYR~~LR~~~~~~~~r-~~~r~~a~~iR~eFe~nk~v---tD~~~I~~Ll~~ 71 (100)
|.-++|||---. + -.+.+++++.-||.+.|..+....+- +.|-..+++|.-.=-.-+.+ ..++++..|+++
T Consensus 48 mAPavStaR~~~ar~~~~~~~a~ke~~a~~~~~~r~vreNad~VGekFaeEARkiHygea~eRGI~GeaS~eEa~aL~Ed 127 (142)
T COG5319 48 MAPAVSTARKQEARQALAMDEAQKEALAKMREAVRHVRENADYVGEKFAEEARKIHYGEADERGIYGEASHEEAKALAED 127 (142)
T ss_pred cccccchhhHHHHhhhhccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccCCccccccCcCCHHHHHHHHHc
Confidence 344666653222 1 22678899999999999998665432 34555555554332333333 456777788877
Q ss_pred HHH
Q 034236 72 AEA 74 (100)
Q Consensus 72 G~~ 74 (100)
|-+
T Consensus 128 Gve 130 (142)
T COG5319 128 GVE 130 (142)
T ss_pred Cce
Confidence 754
No 14
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=44.21 E-value=21 Score=27.85 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCC-CcCCCCCCCcc
Q 034236 64 AIDRMIDEAEATYNKWRHPDP-YIGKCFCTGSK 95 (100)
Q Consensus 64 ~I~~Ll~~G~~~L~~~~Hp~p-~~~~~~pgG~~ 95 (100)
..+.|+-.+++-|...+||-- ..-.++|||+.
T Consensus 202 aaqtllGAakMVl~s~qHP~~Lkd~V~SPgG~T 234 (267)
T KOG3124|consen 202 AAQTLLGAAKMVLASGQHPAQLKDDVCSPGGTT 234 (267)
T ss_pred HHHHHHhHHHHHHhccCCcHHHhCCCCCCCcch
Confidence 457888999999999999944 44567999975
No 15
>PF01724 DUF29: Domain of unknown function DUF29; InterPro: IPR002636 This entry is represented by Ralstonia phage RSS1, Orf11. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family.; PDB: 3FCN_A.
Probab=43.41 E-value=53 Score=22.80 Aligned_cols=46 Identities=7% Similarity=0.003 Sum_probs=24.1
Q ss_pred HHHHHHHHhcCCCCC--HHHHHHHHHHHHHHHHHhhCCCCCcCCCCCC
Q 034236 47 DDLRLRFEANKHVTD--LDAIDRMIDEAEATYNKWRHPDPYIGKCFCT 92 (100)
Q Consensus 47 ~~iR~eFe~nk~vtD--~~~I~~Ll~~G~~~L~~~~Hp~p~~~~~~pg 92 (100)
..|...|+++.++++ ++.++..+..|......-.--.+..||..+.
T Consensus 79 ~~i~~~l~~sPSLk~~l~~~l~~~Y~~A~~~a~~et~l~~~~fP~~CP 126 (139)
T PF01724_consen 79 RQIEDLLEDSPSLKNYLEEILEEAYQDARKLAARETGLPLETFPEECP 126 (139)
T ss_dssp HHHHHH----GGGGGG--HHHHHHHHHH-HHHHHHTT---TT--SS-S
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcccCC
Confidence 578999999999985 3457888988877765544333345555443
No 16
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=34.97 E-value=1.1e+02 Score=19.10 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 034236 42 FYKDADDLRLRFEANKHVTDLDAIDRMIDE 71 (100)
Q Consensus 42 ~r~~a~~iR~eFe~nk~vtD~~~I~~Ll~~ 71 (100)
|-.++.++++.|++.-.-..|.+++.|+++
T Consensus 11 FtEyKKrL~e~l~~k~P~at~~~l~~lve~ 40 (68)
T PF09164_consen 11 FTEYKKRLAERLRAKLPDATPTELKELVEK 40 (68)
T ss_dssp HHHHHHHHHHHHHHH-TTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 455567899999998888889999999875
No 17
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only]
Probab=33.91 E-value=41 Score=25.64 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHHHHHHh
Q 034236 42 FYKDADDLRLRFEANKHVTDL--DAIDRMIDEAEATYNKW 79 (100)
Q Consensus 42 ~r~~a~~iR~eFe~nk~vtD~--~~I~~Ll~~G~~~L~~~ 79 (100)
-+++..++-.||.-|+-++=. .+|...|...|.+...|
T Consensus 167 T~~QllELEkEFhfN~YLtR~RRiEiA~~L~LtErQIKIW 206 (261)
T KOG0489|consen 167 TRYQLLELEKEFHFNKYLTRSRRIEIAHALNLTERQIKIW 206 (261)
T ss_pred chhhhhhhhhhhccccccchHHHHHHHhhcchhHHHHHHH
Confidence 445667899999999999865 46777788888777655
No 18
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.98 E-value=2.4e+02 Score=22.17 Aligned_cols=59 Identities=12% Similarity=0.133 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHH-HHH-HHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 034236 18 KERVQILYRRALKDTLNWAVHRHLFYK-DAD-DLRLRFEANKHVTDLDAIDRMIDEAEATY 76 (100)
Q Consensus 18 r~~Vl~LYR~~LR~~~~~~~~r~~~r~-~a~-~iR~eFe~nk~vtD~~~I~~Ll~~G~~~L 76 (100)
|.|.-.+.|++......|...+..++. ++. .-|+.|-.++..++-++|+.+++.|.-+.
T Consensus 122 rtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rql~i~~~~~~~de~ie~~ie~g~~~~ 182 (297)
T KOG0810|consen 122 RTQTSALSKKLKELMNEFNRTQSKYREEYKERIQRQLFIVGGEETTDEEIEEMIESGGSEV 182 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcCChHHHHHHHHCCChHH
Confidence 345555568887777777655544442 223 44566677776778888999999876554
No 19
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=31.06 E-value=45 Score=22.92 Aligned_cols=27 Identities=22% Similarity=0.381 Sum_probs=18.1
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 034236 49 LRLRFEANKHVTDLDAIDRMIDEAEATY 76 (100)
Q Consensus 49 iR~eFe~nk~vtD~~~I~~Ll~~G~~~L 76 (100)
=|.+|-+.|.+++ ++|+.++.+....-
T Consensus 25 ~k~~FL~sKGLt~-~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 25 KKIAFLESKGLTE-EEIDEALGRAGSPP 51 (136)
T ss_dssp HHHHHHHHCT--H-HHHHHHHHHHT--S
T ss_pred HHHHHHHcCCCCH-HHHHHHHHhcCCcc
Confidence 3789999999995 45888888776655
No 20
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=29.83 E-value=1.6e+02 Score=18.96 Aligned_cols=57 Identities=18% Similarity=0.154 Sum_probs=32.3
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHH-HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhCCCCCcCC
Q 034236 24 LYRRALKDTLNWAVHRHLFYKDA-DDLRLRFEANKHVTDLDAIDRMIDEAEATYNKWRHPDPYIGK 88 (100)
Q Consensus 24 LYR~~LR~~~~~~~~r~~~r~~a-~~iR~eFe~nk~vtD~~~I~~Ll~~G~~~L~~~~Hp~p~~~~ 88 (100)
-|++++....+-.. -.|... ..+|+-++++. .+...+..++. -.+...+|+|||++-
T Consensus 4 ~~~~al~~L~dp~~---PvRa~gL~~L~~Li~~~~--~~~~~~~~il~---l~l~~L~d~DsyVYL 61 (92)
T PF10363_consen 4 TLQEALSDLNDPLP---PVRAHGLVLLRKLIESKS--EPVIDIPKILD---LFLSQLKDEDSYVYL 61 (92)
T ss_pred HHHHHHHHccCCCc---chHHHHHHHHHHHHHcCC--cchhhHHHHHH---HHHHHcCCCCchHHH
Confidence 46666666654221 122222 47899998877 23333344443 334567899999864
No 21
>KOG4263 consensus Putative receptor CCR1 [Signal transduction mechanisms]
Probab=28.51 E-value=2.2e+02 Score=22.47 Aligned_cols=44 Identities=25% Similarity=0.305 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhcCCCCCH
Q 034236 16 AQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDL 62 (100)
Q Consensus 16 ~~r~~Vl~LYR~~LR~~~~~~~~r~~~r~~a~~iR~eFe~nk~vtD~ 62 (100)
.+==+|+.|||-.+..++.+..|-..++. .-|.--+-++.++|.
T Consensus 52 g~fPk~~~Lyr~f~~G~~~~faD~K~~~k---ikr~~~~~~~k~~~L 95 (299)
T KOG4263|consen 52 GKFPKVLALYRTFLEGSRWCFADVKMYFK---IKRAVATGQKKLTDL 95 (299)
T ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHhcCccchhhC
Confidence 34457999999999999875555333332 336666777777764
No 22
>PHA02571 a-gt.4 hypothetical protein; Provisional
Probab=28.43 E-value=2e+02 Score=19.66 Aligned_cols=60 Identities=10% Similarity=0.140 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhh
Q 034236 16 AQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAEATYNKWR 80 (100)
Q Consensus 16 ~~r~~Vl~LYR~~LR~~~~~~~~r~~~r~~a~~iR~eFe~nk~vtD~~~I~~Ll~~G~~~L~~~~ 80 (100)
-+++.+-+|++++-+.+... +.+-|.|...++|.-...- -+.+.|+.|-.-..++++.+.
T Consensus 41 KN~rEIkRL~~HAe~al~~~--Nk~~Y~YAI~KLR~i~kQp---~~de~i~tmW~TSrqqi~di~ 100 (109)
T PHA02571 41 KNRREIKRLKKHAEEALFDN--NKEQYVYAIKKLRDIYKQP---YTDELIETMWETSRQQILDMI 100 (109)
T ss_pred HhHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHHHHHHH
Confidence 47889999999998888653 3344566667899888764 345678888887777776553
No 23
>PRK12513 RNA polymerase sigma factor; Provisional
Probab=27.12 E-value=1.7e+02 Score=20.29 Aligned_cols=10 Identities=70% Similarity=0.793 Sum_probs=7.5
Q ss_pred CcchhhhHHH
Q 034236 1 MSGAISTAAY 10 (100)
Q Consensus 1 ~~~~~~~~~~ 10 (100)
.|||.||++.
T Consensus 2 ~~~~~~~~~~ 11 (194)
T PRK12513 2 LSGAMSTAAA 11 (194)
T ss_pred CCcccCCCCC
Confidence 4788888774
No 24
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=22.18 E-value=53 Score=26.53 Aligned_cols=21 Identities=19% Similarity=0.009 Sum_probs=12.4
Q ss_pred HHHHHHHHHhhCCCCCcCCCCCC
Q 034236 70 DEAEATYNKWRHPDPYIGKCFCT 92 (100)
Q Consensus 70 ~~G~~~L~~~~Hp~p~~~~~~pg 92 (100)
+++-+.|....|||+ =|+.|.
T Consensus 34 KkAYRKLALk~HPDk--Npddp~ 54 (336)
T KOG0713|consen 34 KKAYRKLALKYHPDK--NPDDPN 54 (336)
T ss_pred HHHHHHHHHHhCCCC--CCCCHH
Confidence 444556777777773 455554
No 25
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=21.60 E-value=2.3e+02 Score=17.99 Aligned_cols=66 Identities=23% Similarity=0.261 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHHHHHHHHhhCCCCC
Q 034236 16 AQKERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHV-----TDLDAIDRMIDEAEATYNKWRHPDPY 85 (100)
Q Consensus 16 ~~r~~Vl~LYR~~LR~~~~~~~~r~~~r~~a~~iR~eFe~nk~v-----tD~~~I~~Ll~~G~~~L~~~~Hp~p~ 85 (100)
..+.+++.-...--+....+.. .-......++..|.+|..+ +|.+-|..=+..=+..|. .+||+-|
T Consensus 18 ~~Q~~~l~~ln~tn~~L~~~n~---~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~-~~yP~~y 88 (88)
T PF10241_consen 18 ALQAQTLGRLNKTNEELLNLND---LSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLA-KQYPEEY 88 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCcC
Confidence 3555555555555455544422 1222224789999888754 355555555544444443 4577654
No 26
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=21.01 E-value=2.1e+02 Score=20.36 Aligned_cols=59 Identities=8% Similarity=0.147 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhH-HHHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHHHH
Q 034236 18 KERVQILYRRALKDTLNWAVHR-HLFYKDADDLRLRFEANKHV---TDLDAIDRMIDEAEATY 76 (100)
Q Consensus 18 r~~Vl~LYR~~LR~~~~~~~~r-~~~r~~a~~iR~eFe~nk~v---tD~~~I~~Ll~~G~~~L 76 (100)
...+..+++++.+.+.....+- +.|-..+++|...=...|.| .-+++.+.|+++|-.-+
T Consensus 76 ~~~~~~~l~~~~~~v~~n~e~VG~~FAeEAR~iHyGea~~R~I~G~at~eE~~~L~eEGI~v~ 138 (148)
T PF06676_consen 76 PAELEAALRKLRRHVEKNSEDVGDRFAEEARKIHYGEAEERGIYGEATPEEAKELIEEGIEVL 138 (148)
T ss_pred HHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHcCCCccccCcCcCCHHHHHHHHHcCCeEe
Confidence 3567777777777775432211 24666667776655555555 57899999999986543
No 27
>PRK04387 hypothetical protein; Provisional
Probab=20.78 E-value=2.1e+02 Score=18.77 Aligned_cols=48 Identities=19% Similarity=0.156 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 034236 18 KERVQILYRRALKDTLNWAVHRHLFYKDADDLRLRFEANKHVTDLDAIDRMIDEAE 73 (100)
Q Consensus 18 r~~Vl~LYR~~LR~~~~~~~~r~~~r~~a~~iR~eFe~nk~vtD~~~I~~Ll~~G~ 73 (100)
|..++..||+.-.-.++..... .|=.+|++.-.-+-=.+++..-+.++
T Consensus 36 re~ll~~Y~~FK~VVpsK~EEK--------ql~reFe~~SGYS~Y~~Vk~ak~~~~ 83 (90)
T PRK04387 36 AEELLDAYRRFKEIVPSKAEEK--------QIDREFEKVSGYSIYRAVQKAKEIEE 83 (90)
T ss_pred HHHHHHHHHHHHHhcCChHHHH--------HHHHHHHHHcCCcHHHHHHHHHhccc
Confidence 4445555555444444433322 34456777776665566666555443
Done!