Query 034236
Match_columns 100
No_of_seqs 106 out of 515
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 19:19:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034236.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034236hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u85_B Histone-lysine N-methyl 51.4 5.4 0.00018 18.7 0.8 11 85-95 3-13 (21)
2 2guz_B Mitochondrial import in 39.4 17 0.0006 21.2 2.0 23 67-96 22-44 (65)
3 2jr1_A Virulence regulator; H- 39.1 22 0.00076 22.0 2.5 31 61-92 49-79 (79)
4 4fz4_A 0197-18KD, uncharacteri 36.9 46 0.0016 23.0 4.1 32 62-98 6-37 (154)
5 4b6x_A AVRRPS4, avirulence pro 35.3 57 0.002 20.4 4.0 34 47-80 39-75 (90)
6 2w84_A Peroxisomal membrane pr 32.4 34 0.0012 20.7 2.5 23 49-72 37-59 (70)
7 3ff5_A PEX14P, peroxisomal bio 31.8 34 0.0012 19.6 2.4 22 49-71 32-53 (54)
8 2g8l_A 287AA long hypothetical 31.1 1.6E+02 0.0055 21.8 7.0 11 25-35 24-34 (299)
9 2ffj_A Conserved hypothetical 28.2 1.8E+02 0.0061 21.4 7.4 14 17-30 40-53 (300)
10 2ezd_A High mobility group pro 20.6 59 0.002 15.9 1.7 14 82-95 2-15 (26)
No 1
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=51.39 E-value=5.4 Score=18.75 Aligned_cols=11 Identities=0% Similarity=-0.351 Sum_probs=8.9
Q ss_pred CcCCCCCCCcc
Q 034236 85 YIGKCFCTGSK 95 (100)
Q Consensus 85 ~~~~~~pgG~~ 95 (100)
++||-.||||.
T Consensus 3 wrfparpg~s~ 13 (21)
T 3u85_B 3 WRFPARPGTTG 13 (26)
T ss_pred cccccCCCccc
Confidence 57899999874
No 2
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=39.38 E-value=17 Score=21.23 Aligned_cols=23 Identities=13% Similarity=-0.018 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhhCCCCCcCCCCCCCccc
Q 034236 67 RMIDEAEATYNKWRHPDPYIGKCFCTGSKH 96 (100)
Q Consensus 67 ~Ll~~G~~~L~~~~Hp~p~~~~~~pgG~~y 96 (100)
..+.+.-+.|-...|||- |||.|
T Consensus 22 ~~Ik~~yr~Lm~~nhPDk-------GGS~y 44 (65)
T 2guz_B 22 DKINNRFNYLFEVNDKEK-------GGSFY 44 (65)
T ss_dssp HHHHHHHHHHHHHTCGGG-------TCCHH
T ss_pred HHHHHHHHHHHHHhCCCC-------CCCHH
Confidence 456677888999999986 88866
No 3
>2jr1_A Virulence regulator; H-NS, DNA biding protein, DNA binding PR; NMR {Xylella fastidiosa}
Probab=39.10 E-value=22 Score=21.99 Aligned_cols=31 Identities=26% Similarity=0.144 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCcCCCCCC
Q 034236 61 DLDAIDRMIDEAEATYNKWRHPDPYIGKCFCT 92 (100)
Q Consensus 61 D~~~I~~Ll~~G~~~L~~~~Hp~p~~~~~~pg 92 (100)
-|.-|+..+..+.=.-+...|||- .||.+||
T Consensus 49 ~P~Wi~~~l~~~~~k~wk~~~p~~-~~p~~~~ 79 (79)
T 2jr1_A 49 IPKPFEAWIGTAAYTAWKAKHPDE-KFPAFPG 79 (79)
T ss_dssp CCHHHHHHHHHTTHHHHHHHSSSC-SCCCCCC
T ss_pred CCHHHHHHHHHhHHHHHHhhCCCC-cCCCCCC
Confidence 366778888877777777889988 7888885
No 4
>4fz4_A 0197-18KD, uncharacterized protein conserved in bacteria; surface antigen, immune system; 2.44A {Streptococcus suis}
Probab=36.90 E-value=46 Score=22.99 Aligned_cols=32 Identities=6% Similarity=0.215 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCcCCCCCCCccccc
Q 034236 62 LDAIDRMIDEAEATYNKWRHPDPYIGKCFCTGSKHRI 98 (100)
Q Consensus 62 ~~~I~~Ll~~G~~~L~~~~Hp~p~~~~~~pgG~~y~~ 98 (100)
...++.|+++-+++|++..- +|..|.++.|.+
T Consensus 6 l~~~q~l~kele~eL~eLek-----~p~y~~~s~Y~~ 37 (154)
T 4fz4_A 6 VEEVQKVVKELEKELGELDK-----VPSYGDAQDYSY 37 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-----SCCCCSCGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHhc-----ccccCCcchhhH
Confidence 56789999999999998875 677778888864
No 5
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=35.32 E-value=57 Score=20.40 Aligned_cols=34 Identities=12% Similarity=0.182 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCCCCHHHH---HHHHHHHHHHHHHhh
Q 034236 47 DDLRLRFEANKHVTDLDAI---DRMIDEAEATYNKWR 80 (100)
Q Consensus 47 ~~iR~eFe~nk~vtD~~~I---~~Ll~~G~~~L~~~~ 80 (100)
.-++++..+-.+..+|..| +.+|+++..+|...+
T Consensus 39 ~~Lt~eLq~A~~eaNpaeIA~~~~~L~qAraDL~~l~ 75 (90)
T 4b6x_A 39 NNLTDELQDAIDEANPAEIANTSQQLRHARADLADLQ 75 (90)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHhHHHHHHHHHHHHHHHH
Confidence 4678899888889999888 679999999987654
No 6
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=32.37 E-value=34 Score=20.66 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=17.9
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHH
Q 034236 49 LRLRFEANKHVTDLDAIDRMIDEA 72 (100)
Q Consensus 49 iR~eFe~nk~vtD~~~I~~Ll~~G 72 (100)
-+.+|-+.|.+++ ++|+.++.++
T Consensus 37 ~K~~FL~sKGLt~-eEI~~Al~ra 59 (70)
T 2w84_A 37 TRRAFLKKKGLTD-EEIDMAFQQS 59 (70)
T ss_dssp HHHHHHHHTTCCH-HHHHHHHHHH
T ss_pred HHHHHHHHcCCCH-HHHHHHHHHc
Confidence 3778999999995 4588888775
No 7
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=31.76 E-value=34 Score=19.58 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=16.1
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHH
Q 034236 49 LRLRFEANKHVTDLDAIDRMIDE 71 (100)
Q Consensus 49 iR~eFe~nk~vtD~~~I~~Ll~~ 71 (100)
-+.+|-+.|++++.+ |+.++..
T Consensus 32 ~K~~FL~sKGLt~~E-I~~Al~r 53 (54)
T 3ff5_A 32 TRRAFLKKKGLTDEE-IDLAFQQ 53 (54)
T ss_dssp HHHHHHHHTTCCHHH-HHHHHHH
T ss_pred HHHHHHHHcCCCHHH-HHHHHHc
Confidence 377899999998644 7777653
No 8
>2g8l_A 287AA long hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.04A {Pyrococcus horikoshii} SCOP: e.50.1.1
Probab=31.12 E-value=1.6e+02 Score=21.77 Aligned_cols=11 Identities=0% Similarity=-0.336 Sum_probs=5.0
Q ss_pred HHHHHHHhhhh
Q 034236 25 YRRALKDTLNW 35 (100)
Q Consensus 25 YR~~LR~~~~~ 35 (100)
.++..+.++..
T Consensus 24 ~~q~~~~~~~~ 34 (299)
T 2g8l_A 24 ANQCQRIVEMA 34 (299)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 34444444443
No 9
>2ffj_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.45A {Archaeoglobus fulgidus} SCOP: e.50.1.1
Probab=28.24 E-value=1.8e+02 Score=21.41 Aligned_cols=14 Identities=7% Similarity=-0.204 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 034236 17 QKERVQILYRRALK 30 (100)
Q Consensus 17 ~r~~Vl~LYR~~LR 30 (100)
.+.+++..-+..++
T Consensus 40 ~~~~i~~~~~~~l~ 53 (300)
T 2ffj_A 40 LISQCVDESLKILA 53 (300)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444333443
No 10
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=20.56 E-value=59 Score=15.90 Aligned_cols=14 Identities=36% Similarity=0.373 Sum_probs=11.6
Q ss_pred CCCCcCCCCCCCcc
Q 034236 82 PDPYIGKCFCTGSK 95 (100)
Q Consensus 82 p~p~~~~~~pgG~~ 95 (100)
|.|.++--.|.||+
T Consensus 2 ptpKrpRgRpkGSK 15 (26)
T 2ezd_A 2 PTPKRPRGRPKGSK 15 (26)
T ss_dssp CSCCCCSSCCTTCC
T ss_pred CCCcCCCCCcCccc
Confidence 67888888899986
Done!