BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034237
(100 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1L6H|A Chain A, Solution Structure Of Plant Nsltp2 Purified From Rice
(Oryza Sativa)
Length = 69
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 43/66 (65%)
Query: 35 CSPTELSPCLAALTSSAPPSGACCNKLRQQRPCLCGYLRNPNLRQYVNSPNAKRIVATCG 94
C+ +L+ C A+ A P+ ACC+ LR Q+ C C + ++P +YVNSPNA++ V++CG
Sbjct: 3 CNAGQLTVCTGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCG 62
Query: 95 IPYPRC 100
I P C
Sbjct: 63 IALPTC 68
>pdb|1N89|A Chain A, Solution Structure Of A Liganded Type 2 Wheat Non-Specific
Lipid Transfer Protein
pdb|1TUK|A Chain A, Crystal Stucture Of Liganted Type 2 Non Specific Lipid
Transfer Protein From Wheat
Length = 67
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 41/66 (62%)
Query: 35 CSPTELSPCLAALTSSAPPSGACCNKLRQQRPCLCGYLRNPNLRQYVNSPNAKRIVATCG 94
C ++L+ C +A+ S A PSG CC LR Q+ C C Y ++P QY+ SP+A+ + +CG
Sbjct: 2 CQASQLAVCASAILSGAKPSGECCGNLRAQQGCFCQYAKDPTYGQYIRSPHARDTLTSCG 61
Query: 95 IPYPRC 100
+ P C
Sbjct: 62 LAVPHC 67
>pdb|2RKN|A Chain A, X-Ray Structure Of The Self-Defense And Signaling
Protein Dir1 From Arabidopsis Taliana
Length = 77
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 36 SPTELSPCLAALTSSAP--PSGACCNKLRQ-QRPCLCGYLRNPNLRQYVNSPN-AKRIVA 91
S EL+ C A++ P PS CC L+ CLCGY +P L + P A +
Sbjct: 8 SQDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPK 67
Query: 92 TCGI 95
CG+
Sbjct: 68 QCGL 71
>pdb|1UVA|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer
Protein-1 Complexes From Oryza Sativa
pdb|1UVB|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer
Protein-1 Complexes From Oryza Sativa
pdb|1UVC|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer
Protein-1 Complexes From Oryza Sativa
pdb|1UVC|B Chain B, Lipid Binding In Rice Nonspecific Lipid Transfer
Protein-1 Complexes From Oryza Sativa
pdb|1BV2|A Chain A, Lipid Transfer Protein From Rice Seeds, Nmr, 14
Structures
pdb|1RZL|A Chain A, Rice Nonspecific Lipid Transfer Protein
Length = 91
Score = 28.5 bits (62), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 12/78 (15%)
Query: 33 VTCSP--TELSPCLAALTSSAPPSGACCNKLRQ---------QRPCLCGYLRNPNLR-QY 80
+TC + + PCL A PS ACC+ +R R C L+N +
Sbjct: 1 ITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKG 60
Query: 81 VNSPNAKRIVATCGIPYP 98
+N+ NA I + CG+ P
Sbjct: 61 LNAGNAASIPSKCGVSVP 78
>pdb|1MID|A Chain A, Non-Specific Lipid Transfer Protein 1 From Barley In
Complex With L-Alfa-Lysophosphatidylcholine, Laudoyl
pdb|3GSH|A Chain A, Three-Dimensional Structure Of A Post Translational
Modified Barley Ltp1
pdb|3GSH|B Chain B, Three-Dimensional Structure Of A Post Translational
Modified Barley Ltp1
Length = 91
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 38 TELSPCLAALTSSAPPSGACCNKLRQ 63
+++ PCL + PSG CCN +R
Sbjct: 8 SKMKPCLTYVQGGPGPSGECCNGVRD 33
>pdb|1BE2|A Chain A, Lipid Transfer Protein Complexed With Palmitate, Nmr, 10
Structures
pdb|1JTB|A Chain A, Lipid Transfer Protein Complexed With Palmitoyl Coenzyme
A, Nmr, 16 Structures
pdb|1LIP|A Chain A, Barley Lipid Transfer Protein (Nmr, 4 Structures)
Length = 91
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 38 TELSPCLAALTSSAPPSGACCNKLRQ 63
+++ PCL + PSG CCN +R
Sbjct: 8 SKMKPCLTYVQGGPGPSGECCNGVRD 33
>pdb|2LJO|A Chain A, 3d Solution Structure Of Lipid Transfer Protein Lc-Ltp2
Length = 93
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 32 AVTCSP--TELSPCLAALTSSAPPSGACCNKLRQ---------QRPCLCGYLRN-PNLRQ 79
A++C ++LSPCL LT PS CC +++ R C L++
Sbjct: 1 AISCGAVTSDLSPCLTYLTGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSIT 60
Query: 80 YVNSPNAKRIVATCGIPYP 98
+N+ NA + CG+ P
Sbjct: 61 KLNTNNAAALPGKCGVNIP 79
>pdb|1BWO|A Chain A, The Crystal Structure Of Wheat Non-Specific Transfer
Protein Complexed With Two Molecules Of Phospholipid At
2.1 A Resolution
pdb|1BWO|B Chain B, The Crystal Structure Of Wheat Non-Specific Transfer
Protein Complexed With Two Molecules Of Phospholipid At
2.1 A Resolution
pdb|1GH1|A Chain A, Nmr Structures Of Wheat Nonspecific Lipid Transfer
Protein
Length = 90
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 16/72 (22%)
Query: 40 LSPCLAALTSSAPPSGACC-------NKLRQQRP------CLCGYLRNPNLRQYVNSPNA 86
+ PCL+ + PSG CC N+ R Q CL G R +N NA
Sbjct: 10 VRPCLSYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGI---HNLNEDNA 66
Query: 87 KRIVATCGIPYP 98
+ I CG+ P
Sbjct: 67 RSIPPKCGVNLP 78
>pdb|1CZ2|A Chain A, Solution Structure Of Wheat Ns-Ltp Complexed With
Prostaglandin B2
Length = 90
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 16/72 (22%)
Query: 40 LSPCLAALTSSAPPSGACC-------NKLRQQRP------CLCGYLRNPNLRQYVNSPNA 86
+ PCL+ + PSG CC N+ R Q CL G R +N NA
Sbjct: 10 VRPCLSYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGI---HNLNEDNA 66
Query: 87 KRIVATCGIPYP 98
+ I CG+ P
Sbjct: 67 RSIPPKCGVNLP 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.132 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,035,431
Number of Sequences: 62578
Number of extensions: 59865
Number of successful extensions: 124
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 115
Number of HSP's gapped (non-prelim): 15
length of query: 100
length of database: 14,973,337
effective HSP length: 66
effective length of query: 34
effective length of database: 10,843,189
effective search space: 368668426
effective search space used: 368668426
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)