BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034238
(100 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9T070|COX6A_ARATH Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis
thaliana GN=COX6A PE=2 SV=1
Length = 102
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/95 (68%), Positives = 75/95 (78%), Gaps = 1/95 (1%)
Query: 2 AMVRSGLLQTALRRVSSASSAPPKRGFASSAHHDDAYETAKWEKITYLGIATCTVLAFYN 61
A+VRS L + A+ R + +S PKR F+SSA HDDAYE AKWEKITYLGIA+CT LA Y
Sbjct: 4 AIVRSALSR-AVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAVYV 62
Query: 62 LSKGHPHYEEPPRYEYLHIRNKEFPWGPDGLFEKK 96
LSKGH H E+PP Y ++HIRNKEFPWGPDGLFE K
Sbjct: 63 LSKGHHHGEDPPAYPHMHIRNKEFPWGPDGLFEVK 97
>sp|Q20779|COX6A_CAEEL Probable cytochrome c oxidase subunit 6A, mitochondrial
OS=Caenorhabditis elegans GN=tag-174 PE=3 SV=1
Length = 128
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 36 DAYETAKWEKITYLGIATCTVLAFYNLSKGHPHY---EEPPRYEY--LHIRNKEFPW--G 88
+A ET W+KI ++ C L Y K H + E P EY L++RNK FPW G
Sbjct: 46 NASET--WKKIFFIASIPCLALTMYAAFKDHKKHMSHERPEHVEYAFLNVRNKPFPWSDG 103
Query: 89 PDGLFEKKPEH 99
LF K E
Sbjct: 104 NHSLFHNKAEQ 114
>sp|O13085|COX6A_ONCMY Cytochrome c oxidase subunit 6A, mitochondrial OS=Oncorhynchus
mykiss PE=3 SV=1
Length = 102
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 12/84 (14%)
Query: 16 VSSASSAPPKRGFASSAHHDDAYETAK-WEKITYL----GIATCTVLAFYNLSKGHPHYE 70
++S +S +R ++++H +A+ W+ ++++ G+A C A+ + + H
Sbjct: 1 MASPASMAARRVLSAASHAGHEGGSARTWKILSFVLALPGVAVCIANAYMKMQQ---HSH 57
Query: 71 EPPR---YEYLHIRNKEFPWGPDG 91
EPP Y +L IR K++PWG DG
Sbjct: 58 EPPEFVAYSHLRIRTKKWPWG-DG 80
>sp|P43024|CX6A1_MOUSE Cytochrome c oxidase subunit 6A1, mitochondrial OS=Mus musculus
GN=Cox6a1 PE=1 SV=2
Length = 111
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Query: 25 KRGFASSAHHDDAYETAKWEKITYL----GIATCTVLAFYNLSKGHPHYEEPP--RYEYL 78
+R +S AH ++ W+ +TY G+ + F L H +E PP Y +L
Sbjct: 23 RRPMSSGAHGEEG-SARMWKALTYFVALPGVGVSMLNVF--LKSRHEEHERPPFVAYPHL 79
Query: 79 HIRNKEFPWGPDG 91
IR K FPWG DG
Sbjct: 80 RIRTKPFPWG-DG 91
>sp|P10818|CX6A1_RAT Cytochrome c oxidase subunit 6A1, mitochondrial OS=Rattus
norvegicus GN=Cox6a1 PE=1 SV=2
Length = 111
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 41/92 (44%), Gaps = 18/92 (19%)
Query: 6 SGLLQTALRRVSSASSAPPKRGFASSAHHDDAYETAKWEKITYL----GIATCTVLAFYN 61
SGLL AL RV R +S AH ++ W+ +TY G+ + F
Sbjct: 12 SGLLGRALPRVG--------RPMSSGAHGEEG-SARIWKALTYFVALPGVGVSMLNVF-- 60
Query: 62 LSKGHPHYEEPP--RYEYLHIRNKEFPWGPDG 91
L H +E P Y +L IR K FPWG DG
Sbjct: 61 LKSRHEEHERPEFVAYPHLRIRTKPFPWG-DG 91
>sp|Q756G2|TOM1_ASHGO Probable E3 ubiquitin-protein ligase TOM1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=TOM1 PE=3 SV=2
Length = 3258
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 2 AMVRSGLLQTALRRVSSASSAPPKRGFASSAHH-----DDAYETAKWEKITYLGIATCTV 56
+++ +GL+ + L VS+ +S KR AS+AH DA TA++ I TV
Sbjct: 420 SLISAGLISSLLEIVSTQNSKY-KRTLASAAHLLEDVISDADATAEFINNNGFNILIQTV 478
Query: 57 LAFYNLSKGHPHYEEPPRYEYLH 79
N + +P EPP+Y ++
Sbjct: 479 TYEVNFAVQNPSSAEPPKYSVVY 501
>sp|P13182|CX6A1_BOVIN Cytochrome c oxidase subunit 6A1, mitochondrial OS=Bos taurus
GN=COX6A1 PE=1 SV=3
Length = 109
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 30 SSAHHDDAYETAKWEKITYL----GIATCTVLAFYNLSKGHPHYEEPPRYEYLHIRNKEF 85
SS H + W+ +TY G+ + F G E Y +L IR+K F
Sbjct: 25 SSGAHGEEGSARMWKALTYFVALPGVGVSMLNVFLKSHHGEEERPEFVAYPHLRIRSKPF 84
Query: 86 PWGPDG 91
PWG DG
Sbjct: 85 PWG-DG 89
>sp|Q9TTT7|CX6A1_RABIT Cytochrome c oxidase subunit 6A1, mitochondrial OS=Oryctolagus
cuniculus GN=COX6A1 PE=3 SV=1
Length = 109
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 30 SSAHHDDAYETAKWEKITYLGIATCTVLAFYN--LSKGHPHYEEPP--RYEYLHIRNKEF 85
SS H + W+ +TY ++ N L H +E P Y +L IR+K F
Sbjct: 25 SSGAHGEEGSARMWKALTYFVALPGVGVSMLNVYLKSHHEEHERPEFIAYPHLRIRSKPF 84
Query: 86 PWGPDG 91
PWG DG
Sbjct: 85 PWG-DG 89
>sp|P12074|CX6A1_HUMAN Cytochrome c oxidase subunit 6A1, mitochondrial OS=Homo sapiens
GN=COX6A1 PE=1 SV=4
Length = 109
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 30 SSAHHDDAYETAKWEKITYLGIATCTVLAFYN--LSKGHPHYEEPP--RYEYLHIRNKEF 85
SS H + W+ +T+ ++ N L H +E P Y +L IR K F
Sbjct: 25 SSGAHGEEGSARMWKTLTFFVALPGVAVSMLNVYLKSHHGEHERPEFIAYPHLRIRTKPF 84
Query: 86 PWGPDG 91
PWG DG
Sbjct: 85 PWG-DG 89
>sp|P43023|CX6A2_MOUSE Cytochrome c oxidase subunit 6A2, mitochondrial OS=Mus musculus
GN=Cox6a2 PE=1 SV=2
Length = 97
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 25 KRGFASSAHHDDAYETAK-WEKITYL----GIATCTVLAFYNLSKGHPHYEEPPRYEYLH 79
R AS+A D A W +T++ G+A C++ + + GH E Y +L
Sbjct: 9 SRSMASAAKGDHGGAGANTWRLLTFVLALPGVALCSLNCW--MHAGHHERPEFIPYHHLR 66
Query: 80 IRNKEFPWGPDG 91
IR K F WG DG
Sbjct: 67 IRTKPFAWG-DG 77
>sp|P07471|CX6A2_BOVIN Cytochrome c oxidase subunit 6A2, mitochondrial OS=Bos taurus
GN=COX6A2 PE=1 SV=2
Length = 97
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 26 RGFASSAHHDDAYETAK-WEKITYL----GIATCTVLAFYNLSKGHPHYEEPPRYEYLHI 80
RG AS+A D A+ W +T+ +A CT+ ++ L GH Y +L I
Sbjct: 10 RGLASAAKGDHGGTGARTWRFLTFGLALPSVALCTLNSW--LHSGHRERPAFIPYHHLRI 67
Query: 81 RNKEFPWGPDG 91
R K F WG DG
Sbjct: 68 RTKPFSWG-DG 77
>sp|P54683|TAGB_DICDI Serine protease/ABC transporter B family protein tagB
OS=Dictyostelium discoideum GN=tagB PE=3 SV=2
Length = 1906
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 39 ETAKWEKITYLGIATCTVLAFYNLSKGHPHYEEPPRYEYLH 79
E + W ++ G+AT +AFY+LS G P Y ++
Sbjct: 445 EDSSWAISSFSGLATDAKIAFYDLSSGSSEPTPPEDYSQMY 485
>sp|Q02221|CX6A2_HUMAN Cytochrome c oxidase subunit 6A2, mitochondrial OS=Homo sapiens
GN=COX6A2 PE=2 SV=2
Length = 97
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 43 WEKITYL----GIATCTVLAFYNLSKGHPHYEEPPRYEYLHIRNKEFPWGPDG 91
W +T++ +A CT ++ L GH E Y++L IR K +PWG DG
Sbjct: 28 WRLLTFVLALPSVALCTFNSY--LHSGHRPRPEFRPYQHLRIRTKPYPWG-DG 77
>sp|Q5RC38|CX6A2_PONAB Cytochrome c oxidase subunit 6A2, mitochondrial OS=Pongo abelii
GN=COX6A2 PE=3 SV=1
Length = 97
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 43 WEKITYL----GIATCTVLAFYNLSKGHPHYEEPPRYEYLHIRNKEFPWGPDG 91
W +T++ +A CT ++ L GH E Y++L IR K +PWG DG
Sbjct: 28 WRLLTFVLALPSVALCTFNSY--LHSGHRPRPEFRPYQHLRIRTKPYPWG-DG 77
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,825,406
Number of Sequences: 539616
Number of extensions: 1518514
Number of successful extensions: 2453
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2444
Number of HSP's gapped (non-prelim): 16
length of query: 100
length of database: 191,569,459
effective HSP length: 69
effective length of query: 31
effective length of database: 154,335,955
effective search space: 4784414605
effective search space used: 4784414605
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)