Query 034238
Match_columns 100
No_of_seqs 108 out of 266
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 11:17:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034238.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034238hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02595 cytochrome c oxidase 100.0 1.5E-36 3.2E-41 210.4 8.3 95 2-97 4-101 (102)
2 PF02046 COX6A: Cytochrome c o 100.0 2E-34 4.3E-39 203.2 4.9 67 34-100 36-114 (116)
3 cd00925 Cyt_c_Oxidase_VIa Cyto 100.0 6.5E-34 1.4E-38 192.2 5.9 64 36-99 9-79 (86)
4 KOG3469 Cytochrome c oxidase, 100.0 7.4E-31 1.6E-35 184.5 1.8 95 4-100 3-104 (112)
5 PHA03066 Hypothetical protein; 44.2 17 0.00036 25.9 1.8 25 74-98 38-63 (110)
6 PF01349 Flavi_NS4B: Flaviviru 38.5 83 0.0018 25.2 5.1 51 4-58 131-187 (254)
7 KOG0721 Molecular chaperone (D 34.4 39 0.00085 26.8 2.6 42 39-80 66-107 (230)
8 PF13124 DUF3963: Protein of u 30.3 79 0.0017 18.6 2.8 19 42-60 18-37 (40)
9 KOG3372 Signal peptidase compl 29.4 22 0.00048 27.1 0.5 27 71-97 114-141 (176)
10 PF11346 DUF3149: Protein of u 25.0 1.1E+02 0.0025 18.0 2.9 16 46-61 14-29 (42)
11 PF02180 BH4: Bcl-2 homology r 23.2 34 0.00074 18.6 0.4 12 79-90 16-27 (27)
12 PF03601 Cons_hypoth698: Conse 23.0 1.7E+02 0.0037 23.5 4.5 24 36-59 200-224 (305)
13 PF05961 Chordopox_A13L: Chord 22.9 1.9E+02 0.0041 19.0 3.9 11 73-83 37-47 (68)
14 smart00704 ZnF_CDGSH CDGSH-typ 21.3 54 0.0012 18.8 1.0 11 80-90 20-30 (38)
15 PRK13681 hypothetical protein; 20.2 1E+02 0.0023 17.8 2.0 17 42-58 2-18 (35)
No 1
>PLN02595 cytochrome c oxidase subunit VI protein
Probab=100.00 E-value=1.5e-36 Score=210.38 Aligned_cols=95 Identities=62% Similarity=1.040 Sum_probs=85.3
Q ss_pred hhhhHHHHHHHHHHhhhcCCCCCCCCCCCcccccchHHhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCccccc
Q 034238 2 AMVRSGLLQTALRRVSSASSAPPKRGFASSAHHDDAYETAKWEKITYLGIATCTVLAFYNLSKGHPHYEEPPRYEYLHIR 81 (100)
Q Consensus 2 ~~~r~~~~r~a~~R~~~~~~~~~~R~~~s~~~~~~~~~~~~Wk~iS~~v~~p~v~l~~y~~~~eH~h~~E~~~Y~yl~iR 81 (100)
+++|+.+++++. |.++++....+|+++++++|++++++++||+|||++++||++|++|+++++|+|++|+++|||||||
T Consensus 4 ~~~~~~l~~~~~-~~~~~~~~~~~r~~~a~~~h~~a~~a~~WkklS~~~v~~c~~lnaY~l~~eH~~~e~p~~Y~yLrIR 82 (102)
T PLN02595 4 AIVRSALSRAVT-RAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAVYVLSKGHHHGEDPPAYPYMHIR 82 (102)
T ss_pred HHHHHHHHHHHH-hhccCcccccccccccccCCCcchhhhhhhhhhHHHhHHHHHHHHHHhhhccccCCCCCCCCcceee
Confidence 578999999999 6777888888999888777777778899999999999999999999999888888889999999999
Q ss_pred cCCCCCC-CC--CCCCCCC
Q 034238 82 NKEFPWG-PD--GLFEKKP 97 (100)
Q Consensus 82 ~K~FPWG-dG--tLFhN~~ 97 (100)
+|+|||| || ++|||+.
T Consensus 83 tK~FPWG~DG~~e~~hn~~ 101 (102)
T PLN02595 83 NKEFPWGPDGLFEVKHNKE 101 (102)
T ss_pred cCCCCCCCCcccccccccC
Confidence 9999999 66 9999974
No 2
>PF02046 COX6A: Cytochrome c oxidase subunit VIa; InterPro: IPR001349 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as VIa in vertebrates and fungi. Mammals have two tissue-specific isoforms of VIa, a liver and a heart form. Only one form is found in fish [].; GO: 0004129 cytochrome-c oxidase activity, 0005743 mitochondrial inner membrane, 0005751 mitochondrial respiratory chain complex IV; PDB: 2DYR_G 2EIM_G 2Y69_T 1OCC_G 3AG4_G 3AG2_G 3ASN_G 3ABL_G 1V55_T 2EIJ_T ....
Probab=100.00 E-value=2e-34 Score=203.20 Aligned_cols=67 Identities=33% Similarity=0.591 Sum_probs=41.6
Q ss_pred ccchHHhhhhHHHHHHHHHHHHHHHHHH---HhcCCC-C------CCCCCCCCccccccCCCCCCCC--CCCCCCCCCC
Q 034238 34 HDDAYETAKWEKITYLGIATCTVLAFYN---LSKGHP-H------YEEPPRYEYLHIRNKEFPWGPD--GLFEKKPEHH 100 (100)
Q Consensus 34 ~~~~~~~~~Wk~iS~~v~~p~v~l~~y~---~~~eH~-h------~~E~~~Y~yl~iR~K~FPWGdG--tLFhN~~~~~ 100 (100)
+++++++++||+||++|++|||+|++++ +..+|+ | +||+++|||||||+|+|||||| ||||||++|.
T Consensus 36 ~ha~~~~~~Wk~iS~~v~iP~i~l~~~n~~~l~~~H~eH~~h~~~~pe~~~Y~yl~iR~K~FPWGDG~~tLFhNp~~N~ 114 (116)
T PF02046_consen 36 EHAEETAKLWKKISFFVAIPAIALCMLNAYYLEKEHHEHREHLPERPEFVPYPYLRIRTKPFPWGDGNHTLFHNPHVNA 114 (116)
T ss_dssp STSSSSHHHHHHHHHHTHHHHHHHHHHHHH-HSTS-----------------TTSS--SS--SSTTSSS-TT--TTT-E
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCCCCCCccceecCCCCCCCCCCcCCccCCCcCC
Confidence 4556788999999999999999887544 445553 3 5789999999999999999999 9999999983
No 3
>cd00925 Cyt_c_Oxidase_VIa Cytochrome c oxidase subunit VIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIa is expressed in two tissue-specific isoforms in mammals but not fish. VIa-H is the heart and skeletal muscle isoform; VIa-L is the liver or non-muscle isoform. Mammalian VIa-H induces a slip in CcO (decrease in proton/electron stoichiometry) at high intramitochondrial ATP/ADP ratios, while VIa-L induces a permanent slip i
Probab=100.00 E-value=6.5e-34 Score=192.16 Aligned_cols=64 Identities=33% Similarity=0.546 Sum_probs=56.2
Q ss_pred chHHhhhhHHHHHHHHHHHHHHHH---HHHhcCCCC--CCCCCCCCccccccCCCCCCCC--CCCCCCCCC
Q 034238 36 DAYETAKWEKITYLGIATCTVLAF---YNLSKGHPH--YEEPPRYEYLHIRNKEFPWGPD--GLFEKKPEH 99 (100)
Q Consensus 36 ~~~~~~~Wk~iS~~v~~p~v~l~~---y~~~~eH~h--~~E~~~Y~yl~iR~K~FPWGdG--tLFhN~~~~ 99 (100)
+++++++||+|||+|++|||+|++ |++++||+| +||+++|||||||+|+|||||| ||||||++|
T Consensus 9 ~~~~~~~WkkiS~~va~P~v~l~~~n~y~~~~eh~~~~~pe~~~Y~yl~IR~K~FpWGDG~~tlFhN~~vN 79 (86)
T cd00925 9 AAGTSELWKKISFYVALPAVALCMLNAYLKHKEHEEHERPEFVEYEHLNIRTKPFPWGDGNKTLFHNPHVN 79 (86)
T ss_pred ccchhhhhhhhhhhhHHHHHHHHHHHHHhhhhcccccCCCCCCCCccceeecCCCCCCCCCcccccCCCcC
Confidence 346689999999999999998775 556677653 8899999999999999999999 999999987
No 4
>KOG3469 consensus Cytochrome c oxidase, subunit VIa/COX13 [Energy production and conversion]
Probab=99.96 E-value=7.4e-31 Score=184.52 Aligned_cols=95 Identities=33% Similarity=0.537 Sum_probs=72.4
Q ss_pred hhHHHHHHHHHHhhhcCCCCCCCCCCCcccccchHHhhhhHHHHHHHHHHHHHHHHHHHhcCCC----C-CCCCCCCCcc
Q 034238 4 VRSGLLQTALRRVSSASSAPPKRGFASSAHHDDAYETAKWEKITYLGIATCTVLAFYNLSKGHP----H-YEEPPRYEYL 78 (100)
Q Consensus 4 ~r~~~~r~a~~R~~~~~~~~~~R~~~s~~~~~~~~~~~~Wk~iS~~v~~p~v~l~~y~~~~eH~----h-~~E~~~Y~yl 78 (100)
+++++.|+..+|+...+.....|..++.+.+++. +++|++||||+++||++|++|+.+..|+ | ++|+++|+||
T Consensus 3 l~~~~~rSv~r~~~~ks~~~~~~~~~~~~~~e~~--s~~Wkkit~~~alP~~al~~~n~y~~~~~~~e~~~~e~~~Y~fl 80 (112)
T KOG3469|consen 3 LAVPLTRSVTRRLGLKSARHMYRRAAVAGFKEGG--SRTWKKITFFVALPAVALAMYNAYLGHGHHPEHERPEFRAYEFL 80 (112)
T ss_pred cchhhcccccccccccccccccchhhhhhhcchh--hhhhhheeeeeeccHHHHHHHHHHHhhccCcccCCccccccchh
Confidence 4556677777665444444444555555555443 6899999999999999999887773322 2 5789999999
Q ss_pred ccccCCCCCCCC--CCCCCCCCCC
Q 034238 79 HIRNKEFPWGPD--GLFEKKPEHH 100 (100)
Q Consensus 79 ~iR~K~FPWGdG--tLFhN~~~~~ 100 (100)
|||+|+|||||| ||||||++|+
T Consensus 81 ~iR~K~fpWgdG~~tLfhN~~vn~ 104 (112)
T KOG3469|consen 81 NIRNKPFPWGDGNKTLFHNPHVNP 104 (112)
T ss_pred hhhcCCCCCCCCcchhccCccccc
Confidence 999999999999 9999999885
No 5
>PHA03066 Hypothetical protein; Provisional
Probab=44.20 E-value=17 Score=25.88 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=19.9
Q ss_pred CCCccccccCCCCCCCC-CCCCCCCC
Q 034238 74 RYEYLHIRNKEFPWGPD-GLFEKKPE 98 (100)
Q Consensus 74 ~Y~yl~iR~K~FPWGdG-tLFhN~~~ 98 (100)
++.+...|.-.|||-.. +||.+|.+
T Consensus 38 e~~~ik~~d~~~P~~~~t~lF~~~~~ 63 (110)
T PHA03066 38 ENAIIKQRNDEFPTTLNTIIFTDPET 63 (110)
T ss_pred HHHHHHhhhccCCcccceEEecCCCC
Confidence 44457778889999888 99999875
No 6
>PF01349 Flavi_NS4B: Flavivirus non-structural protein NS4B; InterPro: IPR001528 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4B protein is small and poorly conserved among the Flaviviruses. NS4B contains multiple hydrophobic potential membrane spanning regions []. NS4B may form membrane components of the viral replication complex and could be involved in membrane localisation of NS3 and NS5 (see IPR000208 from INTERPRO) [].; GO: 0003968 RNA-directed RNA polymerase activity, 0004252 serine-type endopeptidase activity, 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=38.52 E-value=83 Score=25.22 Aligned_cols=51 Identities=8% Similarity=0.067 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHhhhcCCCCCCCCCCCccc------ccchHHhhhhHHHHHHHHHHHHHHH
Q 034238 4 VRSGLLQTALRRVSSASSAPPKRGFASSAH------HDDAYETAKWEKITYLGIATCTVLA 58 (100)
Q Consensus 4 ~r~~~~r~a~~R~~~~~~~~~~R~~~s~~~------~~~~~~~~~Wk~iS~~v~~p~v~l~ 58 (100)
+++.+.|.|+||..+-. ..+.-..|. +.++.....=||++.++.+.+++++
T Consensus 131 ~qA~~~r~Aqkr~aagi----~KNp~VDG~~~~di~~~~~~~p~~EKKlg~vlli~la~~s 187 (254)
T PF01349_consen 131 LQAEATRRAQKRTAAGI----MKNPVVDGIVTTDIPEGEAMPPLYEKKLGQVLLIALALAS 187 (254)
T ss_pred HHHHHHHHHHHHHHHHH----hcCCccCCeeccCCCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 57788999998865332 133322222 2232333455888887666555444
No 7
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=34.36 E-value=39 Score=26.81 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=28.9
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcccc
Q 034238 39 ETAKWEKITYLGIATCTVLAFYNLSKGHPHYEEPPRYEYLHI 80 (100)
Q Consensus 39 ~~~~Wk~iS~~v~~p~v~l~~y~~~~eH~h~~E~~~Y~yl~i 80 (100)
+...|++|+++++=.+++..+|.+.+-...+-.+-+|+=|.|
T Consensus 66 ~~~~~~~i~lv~~W~v~~fL~y~i~~~~~~~~~fDPyEILGl 107 (230)
T KOG0721|consen 66 SISTKRKVFLVVGWAVIAFLIYKIMNSRRERQKFDPYEILGL 107 (230)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHhhCC
Confidence 445789999888777777777777643333445677777765
No 8
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=30.34 E-value=79 Score=18.59 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=13.5
Q ss_pred hh-HHHHHHHHHHHHHHHHH
Q 034238 42 KW-EKITYLGIATCTVLAFY 60 (100)
Q Consensus 42 ~W-k~iS~~v~~p~v~l~~y 60 (100)
+| |+|+++.++-.|+|.+.
T Consensus 18 kwirnit~cfal~vv~lvsl 37 (40)
T PF13124_consen 18 KWIRNITFCFALLVVVLVSL 37 (40)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56 78999887777665543
No 9
>KOG3372 consensus Signal peptidase complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.42 E-value=22 Score=27.13 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=20.8
Q ss_pred CCCCCCccccccCCCCCCCC-CCCCCCC
Q 034238 71 EPPRYEYLHIRNKEFPWGPD-GLFEKKP 97 (100)
Q Consensus 71 E~~~Y~yl~iR~K~FPWGdG-tLFhN~~ 97 (100)
|...-.-..+++|-+||.|| .||.|+.
T Consensus 114 d~~~l~~~~~~sky~f~D~g~nl~~~kn 141 (176)
T KOG3372|consen 114 DNAVLDGKDMSSKYYFFDDGNNLFGGKN 141 (176)
T ss_pred chhhhhhhccccceeEEecCCCccCCCc
Confidence 33445566788999999999 9999764
No 10
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=24.97 E-value=1.1e+02 Score=17.99 Aligned_cols=16 Identities=6% Similarity=0.135 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 034238 46 ITYLGIATCTVLAFYN 61 (100)
Q Consensus 46 iS~~v~~p~v~l~~y~ 61 (100)
.|++|+++.+++.+|.
T Consensus 14 ~Sl~vI~~~igm~~~~ 29 (42)
T PF11346_consen 14 MSLIVIVFTIGMGVFF 29 (42)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3677777777777544
No 11
>PF02180 BH4: Bcl-2 homology region 4; InterPro: IPR003093 Apoptosis, or programmed cell death (PCD), is a common and evolutionarily conserved property of all metazoans []. In many biological processes, apoptosis is required to eliminate supernumerary or dangerous (such as pre-cancerous) cells and to promote normal development. Dysregulation of apoptosis can, therefore, contribute to the development of many major diseases including cancer, autoimmunity and neurodegenerative disorders. In most cases, proteins of the caspase family execute the genetic programme that leads to cell death. Bcl-2 proteins are central regulators of caspase activation, and play a key role in cell death by regulating the integrity of the mitochondrial and endoplasmic reticulum (ER) membranes []. At least 20 Bcl-2 proteins have been reported in mammals, and several others have been identified in viruses. Bcl-2 family proteins fall roughly into three subtypes, which either promote cell survival (anti-apoptotic) or trigger cell death (pro-apoptotic). All members contain at least one of four conserved motifs, termed Bcl-2 Homology (BH) domains. Bcl-2 subfamily proteins, which contain at least BH1 and BH2, promote cell survival by inhibiting the adapters needed for the activation of caspases. Pro-apoptotic members potentially exert their effects by displacing the adapters from the pro-survival proteins; these proteins belong either to the Bax subfamily, which contain BH1-BH3, or to the BH3 subfamily, which mostly only feature BH3 []. Thus, the balance between antagonistic family members is believed to play a role in determining cell fate. Members of the wider Bcl-2 family, which also includes Bcl-x, Bcl-w and Mcl-1, are described by their similarity to Bcl-2 protein, a member of the pro-survival Bcl-2 subfamily []. Full-length Bcl-2 proteins feature all four BH domains, seven alpha-helices, and a C-terminal hydrophobic motif that targets the protein to the outer mitochondrial membrane, ER and nuclear envelope. Active cell suicide (apoptosis) is induced by events such as growth factor withdrawal and toxins. It is controlled by regulators, which have either an inhibitory effect on programmed cell death (anti-apoptotic) or block the protective effect of inhibitors (pro-apoptotic) [, ]. Many viruses have found a way of countering defensive apoptosis by encoding their own anti-apoptosis genes preventing their target-cells from dying too soon. All proteins belonging to the Bcl-2 family [] contain either a BH1, BH2, BH3, or BH4 domain. All anti-apoptotic proteins contain BH1 and BH2 domains, some of them contain an additional N-terminal BH4 domain (Bcl-2, Bcl-x(L), Bcl-w), which is never seen in pro-apoptotic proteins, except for Bcl-x(S). On the other hand, all pro-apoptotic proteins contain a BH3 domain (except for Bad) necessary for dimerisation with other proteins of Bcl-2 family and crucial for their killing activity, some of them also contain BH1 and BH2 domains (Bax, Bak). The BH3 domain is also present in some anti-apoptotic protein, such as Bcl-2 or Bcl-x(L). Proteins that are known to contain these domains include vertebrate Bcl-2 (alpha and beta isoforms) and Bcl-x (isoforms (Bcl-x(L) and Bcl-x(S)); mammalian proteins Bax and Bak; mouse protein Bid; Xenopus laevis proteins Xr1 and Xr11; human induced myeloid leukemia cell differentiation protein MCL1 and Caenorhabditis elegans protein ced-9.; GO: 0042981 regulation of apoptosis; PDB: 1AF3_A 2PON_B 1YSN_A 3PL7_B 3R85_A 2O2N_A 2P1L_C 1R2G_A 2O1Y_A 1BXL_A ....
Probab=23.22 E-value=34 Score=18.64 Aligned_cols=12 Identities=8% Similarity=0.603 Sum_probs=8.8
Q ss_pred ccccCCCCCCCC
Q 034238 79 HIRNKEFPWGPD 90 (100)
Q Consensus 79 ~iR~K~FPWGdG 90 (100)
+++.|.|+|++.
T Consensus 16 KLsQrgy~w~~~ 27 (27)
T PF02180_consen 16 KLSQRGYVWEEA 27 (27)
T ss_dssp HHHHTTSTSTTT
T ss_pred HhhhcCCCCCCC
Confidence 567788888763
No 12
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=23.04 E-value=1.7e+02 Score=23.46 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=10.8
Q ss_pred chHHhhhhHHHHHHHH-HHHHHHHH
Q 034238 36 DAYETAKWEKITYLGI-ATCTVLAF 59 (100)
Q Consensus 36 ~~~~~~~Wk~iS~~v~-~p~v~l~~ 59 (100)
++.+...+-|++=.+. .|.+.+..
T Consensus 200 ~a~~~A~ivKl~Rv~lL~pv~~~l~ 224 (305)
T PF03601_consen 200 EAGDVATIVKLTRVLLLGPVVLVLA 224 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554332 34443333
No 13
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=22.93 E-value=1.9e+02 Score=18.97 Aligned_cols=11 Identities=18% Similarity=0.250 Sum_probs=6.8
Q ss_pred CCCCccccccC
Q 034238 73 PRYEYLHIRNK 83 (100)
Q Consensus 73 ~~Y~yl~iR~K 83 (100)
..||.+.-++-
T Consensus 37 e~y~~~~~~kT 47 (68)
T PF05961_consen 37 ENYEKMENLKT 47 (68)
T ss_pred hhcCCccccch
Confidence 56777765543
No 14
>smart00704 ZnF_CDGSH CDGSH-type zinc finger. Function unknown.
Probab=21.30 E-value=54 Score=18.75 Aligned_cols=11 Identities=36% Similarity=0.646 Sum_probs=9.6
Q ss_pred cccCCCCCCCC
Q 034238 80 IRNKEFPWGPD 90 (100)
Q Consensus 80 iR~K~FPWGdG 90 (100)
-++|.+||=||
T Consensus 20 ~~S~~~PfCDG 30 (38)
T smart00704 20 GRSKNFPYCDG 30 (38)
T ss_pred CCCCCCCccCC
Confidence 47889999999
No 15
>PRK13681 hypothetical protein; Provisional
Probab=20.17 E-value=1e+02 Score=17.75 Aligned_cols=17 Identities=12% Similarity=0.192 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHHHHHH
Q 034238 42 KWEKITYLGIATCTVLA 58 (100)
Q Consensus 42 ~Wk~iS~~v~~p~v~l~ 58 (100)
.|+|+.+...+..++++
T Consensus 2 ~~~K~~~i~lfalmAiG 18 (35)
T PRK13681 2 RIAKIGVIALFLLMAIG 18 (35)
T ss_pred cHHHHHHHHHHHHHHhc
Confidence 48888886666555543
Done!