Query 034238
Match_columns 100
No_of_seqs 108 out of 266
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 19:21:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034238.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034238hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y69_G Cytochrome C oxidase po 100.0 1.3E-36 4.5E-41 208.1 7.4 80 19-99 3-88 (97)
2 1v54_G Cytochrome C oxidase po 100.0 2.8E-34 9.7E-39 192.6 7.4 65 35-99 8-76 (85)
3 1pp9_G Ubiquinol-cytochrome C 26.1 35 0.0012 21.7 1.9 19 40-58 35-56 (81)
4 4ezf_A Mitoneet, CDGSH iron-su 25.4 25 0.00084 22.7 1.1 11 80-90 44-54 (77)
5 3l7h_A RE64145P, roadblock; LC 22.2 20 0.00069 23.4 0.2 13 73-85 65-77 (97)
6 3s2r_A AT5G51720/MIO24_14; red 18.2 42 0.0014 21.8 1.1 11 80-90 52-62 (83)
7 3fnv_A CDGSH iron sulfur domai 17.6 45 0.0015 21.7 1.1 12 79-90 49-60 (83)
8 2a2m_A Hypothetical protein BT 17.1 32 0.0011 25.4 0.3 17 74-90 17-33 (258)
9 2hz5_A Dynein light chain 2A, 16.7 32 0.0011 22.8 0.2 12 74-85 75-86 (106)
10 3tgu_G UQCRQ, mitochondrial ub 16.2 1.3E+02 0.0046 19.0 3.1 35 21-58 19-56 (81)
No 1
>2y69_G Cytochrome C oxidase polypeptide 6A2; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=100.00 E-value=1.3e-36 Score=208.13 Aligned_cols=80 Identities=24% Similarity=0.312 Sum_probs=60.8
Q ss_pred cCCCCCCCCCCCccccc-chHHhhhhHHHHHHHHHHHHHHHHHHHh---cCCCCCCCCCCCCccccccCCCCCCCC--CC
Q 034238 19 ASSAPPKRGFASSAHHD-DAYETAKWEKITYLGIATCTVLAFYNLS---KGHPHYEEPPRYEYLHIRNKEFPWGPD--GL 92 (100)
Q Consensus 19 ~~~~~~~R~~~s~~~~~-~~~~~~~Wk~iS~~v~~p~v~l~~y~~~---~eH~h~~E~~~Y~yl~iR~K~FPWGdG--tL 92 (100)
.++++.+|.|+|+++.+ +++++++||+|||+|++|||+|++++.+ +| +|+||+++|||||||+|+|||||| ||
T Consensus 3 ~~~~~~~r~~as~a~~~ha~~~~~~WkkiS~~va~P~v~l~~~n~y~~~~e-h~~~E~~~Y~yl~IR~K~FPWGDG~~tL 81 (97)
T 2y69_G 3 LPLKSLSRGLASAAKGDHGGTGARTWRFLTFGLALPSVALCTLNSWLHSGH-RERPAFIPYHHLRIRTKPFSWGDGNHTF 81 (97)
T ss_dssp ----------CCCSCCCCSSCCHHHHHHHHHHTHHHHHHHHHHHHTTSCSC-CCCCCCCCCTTSSCCSSCCSSTTSSSCT
T ss_pred ccccccccccccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccc-CCCCCCCCCchhhhccCCCCCCCCCcCc
Confidence 34456678888876544 4677899999999999999999876655 34 468999999999999999999999 99
Q ss_pred CCCCCCC
Q 034238 93 FEKKPEH 99 (100)
Q Consensus 93 FhN~~~~ 99 (100)
||||++|
T Consensus 82 FhNp~~N 88 (97)
T 2y69_G 82 FHNPRVN 88 (97)
T ss_dssp TCCTTTC
T ss_pred ccCCCcC
Confidence 9999988
No 2
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=100.00 E-value=2.8e-34 Score=192.59 Aligned_cols=65 Identities=23% Similarity=0.348 Sum_probs=57.2
Q ss_pred cchHHhhhhHHHHHHHHHHHHHHHHHHHhc--CCCCCCCCCCCCccccccCCCCCCCC--CCCCCCCCC
Q 034238 35 DDAYETAKWEKITYLGIATCTVLAFYNLSK--GHPHYEEPPRYEYLHIRNKEFPWGPD--GLFEKKPEH 99 (100)
Q Consensus 35 ~~~~~~~~Wk~iS~~v~~p~v~l~~y~~~~--eH~h~~E~~~Y~yl~iR~K~FPWGdG--tLFhN~~~~ 99 (100)
++++++++||+|||+|++|||+|++++.+. +|+|+||+++|||||||+|+|||||| ||||||++|
T Consensus 8 ha~~~~~~Wkkis~~va~P~v~l~~~n~y~~~~e~~~pE~~~Y~yl~IR~K~FPWGdGd~tLFhN~~~N 76 (85)
T 1v54_G 8 HGGTGARTWRFLTFGLALPSVALCTLNSWLHSGHRERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVN 76 (85)
T ss_dssp CSCCCHHHHHHHHHHTHHHHHHHHHHHHTTSCSCCCCCCCCCCTTSSCCSSCCSSTTSSSCTTCCTTTC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCchhheecCCCCCCCCCcCcccCCCcC
Confidence 345778999999999999999999777652 23568899999999999999999999 999999987
No 3
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=26.09 E-value=35 Score=21.71 Aligned_cols=19 Identities=0% Similarity=-0.122 Sum_probs=13.1
Q ss_pred hhhhHHHH---HHHHHHHHHHH
Q 034238 40 TAKWEKIT---YLGIATCTVLA 58 (100)
Q Consensus 40 ~~~Wk~iS---~~v~~p~v~l~ 58 (100)
-+.||++. +++++|+|+.-
T Consensus 35 ~n~~RR~~~~~l~v~pPfv~~Y 56 (81)
T 1pp9_G 35 PNVLRRTRACILRVAPPFVAFY 56 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcceeeehhHHHHH
Confidence 36788774 57888887643
No 4
>4ezf_A Mitoneet, CDGSH iron-sulfur domain-containing protein 1; 2Fe-2S proteins, membrane, mitochondrion, signal-anchor, transmembrane; 1.19A {Homo sapiens} PDB: 2qd0_A 3ree_A 2r13_A 3ew0_A 2qh7_A 4f1e_A 4f2c_A 4f28_A 3lpq_A
Probab=25.42 E-value=25 Score=22.65 Aligned_cols=11 Identities=36% Similarity=0.721 Sum_probs=9.9
Q ss_pred cccCCCCCCCC
Q 034238 80 IRNKEFPWGPD 90 (100)
Q Consensus 80 iR~K~FPWGdG 90 (100)
=|+|.|||=||
T Consensus 44 ~~Sk~~PfCDG 54 (77)
T 4ezf_A 44 WRSKKFPFCDG 54 (77)
T ss_dssp SCCTTTTBCCS
T ss_pred CCCCCCCccCC
Confidence 48899999999
No 5
>3l7h_A RE64145P, roadblock; LC7, KM23, dynein, light chain, hydrolase, protei transport; 1.95A {Drosophila melanogaster} SCOP: d.110.7.1 PDB: 3l9k_A 1z09_A 2e8j_A 1y4o_A
Probab=22.23 E-value=20 Score=23.39 Aligned_cols=13 Identities=23% Similarity=0.544 Sum_probs=10.8
Q ss_pred CCCCccccccCCC
Q 034238 73 PRYEYLHIRNKEF 85 (100)
Q Consensus 73 ~~Y~yl~iR~K~F 85 (100)
-+-.|||||+|.+
T Consensus 65 del~fLRiRTkk~ 77 (97)
T 3l7h_A 65 NDMTFLRVRSKKH 77 (97)
T ss_dssp CCEEEEEEEESSC
T ss_pred CCeEEEEEEeCCc
Confidence 3679999999975
No 6
>3s2r_A AT5G51720/MIO24_14; redox, Fe-S cluster, metal binding protein; 1.14A {Arabidopsis thaliana} PDB: 3s2q_A
Probab=18.19 E-value=42 Score=21.81 Aligned_cols=11 Identities=27% Similarity=0.423 Sum_probs=9.8
Q ss_pred cccCCCCCCCC
Q 034238 80 IRNKEFPWGPD 90 (100)
Q Consensus 80 iR~K~FPWGdG 90 (100)
=|+|.||+=||
T Consensus 52 ~~Sk~~P~CDG 62 (83)
T 3s2r_A 52 WRSGTFPLCDG 62 (83)
T ss_dssp SCCTTTTBCCS
T ss_pred CCCCCCCccCc
Confidence 48899999999
No 7
>3fnv_A CDGSH iron sulfur domain-containing protein 2; diabetes, membrane bound, thiazolidinedione, oxidative stres endoplasmic reticulum, membrane; 2.10A {Homo sapiens}
Probab=17.59 E-value=45 Score=21.70 Aligned_cols=12 Identities=33% Similarity=0.390 Sum_probs=10.4
Q ss_pred ccccCCCCCCCC
Q 034238 79 HIRNKEFPWGPD 90 (100)
Q Consensus 79 ~iR~K~FPWGdG 90 (100)
.-|+|.|||=||
T Consensus 49 C~~S~~~PfCDG 60 (83)
T 3fnv_A 49 CWRSKTFPACDG 60 (83)
T ss_dssp SSCCTTTTBCCS
T ss_pred CCCCCCCCccCc
Confidence 458899999999
No 8
>2a2m_A Hypothetical protein BT3146; putative TENA family transcriptional regulator, structural G joint center for structural genomics; 1.88A {Bacteroides thetaiotaomicron} SCOP: a.132.1.3 PDB: 2a2o_A
Probab=17.14 E-value=32 Score=25.37 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=11.3
Q ss_pred CCCccccccCCCCCCCC
Q 034238 74 RYEYLHIRNKEFPWGPD 90 (100)
Q Consensus 74 ~Y~yl~iR~K~FPWGdG 90 (100)
+-.+||+|+.-.|||.|
T Consensus 17 ~~~~~~~~~~~~~~~~~ 33 (258)
T 2a2m_A 17 KNQWLRKRTFAIPASRL 33 (258)
T ss_dssp -----CCCCCCCCGGGC
T ss_pred HHHHHHHhhcccccccC
Confidence 56789999999999988
No 9
>2hz5_A Dynein light chain 2A, cytoplasmic; DNLC2A, transport protein; 2.10A {Homo sapiens} SCOP: d.110.7.1 PDB: 2b95_A
Probab=16.73 E-value=32 Score=22.78 Aligned_cols=12 Identities=33% Similarity=0.562 Sum_probs=10.6
Q ss_pred CCCccccccCCC
Q 034238 74 RYEYLHIRNKEF 85 (100)
Q Consensus 74 ~Y~yl~iR~K~F 85 (100)
+..+||||+|.+
T Consensus 75 eL~fLRiRTkkh 86 (106)
T 2hz5_A 75 DLTFLRIRSKKN 86 (106)
T ss_dssp CEEEEEEEESSC
T ss_pred CeEEEEEEeCCc
Confidence 679999999975
No 10
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=16.16 E-value=1.3e+02 Score=18.95 Aligned_cols=35 Identities=9% Similarity=0.083 Sum_probs=20.0
Q ss_pred CCCCCCCCCCcccccchHHhhhhHHHH---HHHHHHHHHHH
Q 034238 21 SAPPKRGFASSAHHDDAYETAKWEKIT---YLGIATCTVLA 58 (100)
Q Consensus 21 ~~~~~R~~~s~~~~~~~~~~~~Wk~iS---~~v~~p~v~l~ 58 (100)
++-.+|.++..-++ + --++||++. +++++|+|+.-
T Consensus 19 SP~~Qr~~ag~~~~-~--i~N~~RR~~~q~l~v~pPfi~~Y 56 (81)
T 3tgu_G 19 SPFEQRAIPNIFSD-A--LPNVWRRFSSQVFKVAPPFLGAY 56 (81)
T ss_dssp CTTTBCSSCCCCCC-C--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Ccccccccccchhh-h--hhHHHHHHHHhhhHhhHHHHHHH
Confidence 34445666644322 2 236788765 56888887644
Done!