BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034242
(100 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KRX|A Chain A, Solution Nmr Structure Of Asl3597 From Nostoc Sp. Pcc7120.
Northeast Structural Genomics Consortium Target Id
Nsr244
Length = 94
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 11/86 (12%)
Query: 18 RTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLI 77
+ + +V+LE E+F+T EL +LK LE ++ LP +L K ++ LI
Sbjct: 8 QQDNFVVLETNQPEQFLTTIELLEKLKGELE----KISFSDLPLELQKLDSLPAQAQHLI 63
Query: 78 TNVCELELQGDVGS---IQWYEVRLE 100
CEL DVG+ +QWY VRLE
Sbjct: 64 DTSCEL----DVGAGKYLQWYAVRLE 85
>pdb|3G5W|A Chain A, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|B Chain B, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|C Chain C, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|D Chain D, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|E Chain E, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|F Chain F, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
Length = 318
Score = 33.1 bits (74), Expect = 0.042, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 31 EKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATID 70
EK VT++ + L W+ +WA + G+GG+P D+ + TI+
Sbjct: 132 EKTVTKDYI-LMLSDWVSSWANKPGEGGIPGDVFDYYTIN 170
>pdb|2AJF|A Chain A, Structure Of Sars Coronavirus Spike Receptor-Binding
Domain Complexed With Its Receptor
pdb|2AJF|B Chain B, Structure Of Sars Coronavirus Spike Receptor-Binding
Domain Complexed With Its Receptor
pdb|3KBH|A Chain A, Crystal Structure Of Nl63 Respiratory Coronavirus
Receptor-Binding Domain Complexed With Its Human
Receptor
pdb|3KBH|B Chain B, Crystal Structure Of Nl63 Respiratory Coronavirus
Receptor-Binding Domain Complexed With Its Human
Receptor
pdb|3KBH|C Chain C, Crystal Structure Of Nl63 Respiratory Coronavirus
Receptor-Binding Domain Complexed With Its Human
Receptor
pdb|3KBH|D Chain D, Crystal Structure Of Nl63 Respiratory Coronavirus
Receptor-Binding Domain Complexed With Its Human
Receptor
Length = 597
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 23 VLLEPGVEEKFVTEEELKARLKYWLENWAGQVGK 56
+LLEPG+ E + RL W E+W +VGK
Sbjct: 124 LLLEPGLNEIMANSLDYNERLWAW-ESWRSEVGK 156
>pdb|1R42|A Chain A, Native Human Angiotensin Converting Enzyme-related
Carboxypeptidase (ace2)
pdb|1R4L|A Chain A, Inhibitor Bound Human Angiotensin Converting
Enzyme-Related Carboxypeptidase (Ace2)
Length = 615
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 23 VLLEPGVEEKFVTEEELKARLKYWLENWAGQVGK 56
+LLEPG+ E + RL W E+W +VGK
Sbjct: 142 LLLEPGLNEIMANSLDYNERLWAW-ESWRSEVGK 174
>pdb|3SCI|A Chain A, Crystal Structure Of Spike Protein Receptor-Binding Domain
From A Predicted Sars Coronavirus Human Strain Complexed
With Human Receptor Ace2
pdb|3SCI|B Chain B, Crystal Structure Of Spike Protein Receptor-Binding Domain
From A Predicted Sars Coronavirus Human Strain Complexed
With Human Receptor Ace2
pdb|3SCJ|A Chain A, Crystal Structure Of Spike Protein Receptor-Binding Domain
From A Predicted Sars Coronavirus Civet Strain Complexed
With Human Receptor Ace2
pdb|3SCJ|B Chain B, Crystal Structure Of Spike Protein Receptor-Binding Domain
From A Predicted Sars Coronavirus Civet Strain Complexed
With Human Receptor Ace2
Length = 603
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 23 VLLEPGVEEKFVTEEELKARLKYWLENWAGQVGK 56
+LLEPG+ E + RL W E+W +VGK
Sbjct: 124 LLLEPGLNEIMANSLDYNERLWAW-ESWRSEVGK 156
>pdb|3D0G|A Chain A, Crystal Structure Of Spike Protein Receptor-Binding Domain
From The 2002-2003 Sars Coronavirus Human Strain
Complexed With Human-Civet Chimeric Receptor Ace2
pdb|3D0G|B Chain B, Crystal Structure Of Spike Protein Receptor-Binding Domain
From The 2002-2003 Sars Coronavirus Human Strain
Complexed With Human-Civet Chimeric Receptor Ace2
pdb|3D0H|A Chain A, Crystal Structure Of Spike Protein Receptor-Binding Domain
From The 2002-2003 Sars Coronavirus Civet Strain
Complexed With Human-Civet Chimeric Receptor Ace2
pdb|3D0H|B Chain B, Crystal Structure Of Spike Protein Receptor-Binding Domain
From The 2002-2003 Sars Coronavirus Civet Strain
Complexed With Human-Civet Chimeric Receptor Ace2
pdb|3D0I|A Chain A, Crystal Structure Of Spike Protein Receptor-Binding Domain
From The 2005-2006 Sars Coronavirus Civet Strain
Complexed With Human-Civet Chimeric Receptor Ace2
pdb|3D0I|B Chain B, Crystal Structure Of Spike Protein Receptor-Binding Domain
From The 2005-2006 Sars Coronavirus Civet Strain
Complexed With Human-Civet Chimeric Receptor Ace2
Length = 597
Score = 28.1 bits (61), Expect = 1.1, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 23 VLLEPGVEEKFVTEEELKARLKYWLENWAGQVGK 56
+LLEPG+ E + RL W E+W +VGK
Sbjct: 124 LLLEPGLNEIMANSLDYNERLWAW-ESWRSEVGK 156
>pdb|3SCK|A Chain A, Crystal Structure Of Spike Protein Receptor-Binding Domain
From A Predicted Sars Coronavirus Civet Strain Complexed
With Human-Civet Chimeric Receptor Ace2
pdb|3SCK|B Chain B, Crystal Structure Of Spike Protein Receptor-Binding Domain
From A Predicted Sars Coronavirus Civet Strain Complexed
With Human-Civet Chimeric Receptor Ace2
pdb|3SCL|A Chain A, Crystal Structure Of Spike Protein Receptor-Binding Domain
From Sars Coronavirus Epidemic Strain Complexed With
Human-Civet Chimeric Receptor Ace2
pdb|3SCL|B Chain B, Crystal Structure Of Spike Protein Receptor-Binding Domain
From Sars Coronavirus Epidemic Strain Complexed With
Human-Civet Chimeric Receptor Ace2
Length = 603
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 23 VLLEPGVEEKFVTEEELKARLKYWLENWAGQVGK 56
+LLEPG+ E + RL W E+W +VGK
Sbjct: 124 LLLEPGLNEIMANSLDYNERLWAW-ESWRSEVGK 156
>pdb|1V8Z|A Chain A, X-Ray Crystal Structure Of The Tryptophan Synthase B2
Subunit From Hyperthermophile, Pyrococcus Furiosus
pdb|1V8Z|B Chain B, X-Ray Crystal Structure Of The Tryptophan Synthase B2
Subunit From Hyperthermophile, Pyrococcus Furiosus
pdb|1V8Z|C Chain C, X-Ray Crystal Structure Of The Tryptophan Synthase B2
Subunit From Hyperthermophile, Pyrococcus Furiosus
pdb|1V8Z|D Chain D, X-Ray Crystal Structure Of The Tryptophan Synthase B2
Subunit From Hyperthermophile, Pyrococcus Furiosus
Length = 388
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Query: 24 LLEPGVE-----EKFVTEEELKARLKYWLENWAGQ 53
L+EP E ++F +EE +L Y+L+ WAG+
Sbjct: 15 LIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGR 49
>pdb|1WDW|B Chain B, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|D Chain D, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|F Chain F, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|H Chain H, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|J Chain J, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|L Chain L, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
Length = 385
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Query: 24 LLEPGVE-----EKFVTEEELKARLKYWLENWAGQ 53
L+EP E ++F +EE +L Y+L+ WAG+
Sbjct: 15 LIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGR 49
>pdb|4EVX|A Chain A, Crystal Structure Of Putative Phage Endolysin From S.
Enterica
pdb|4EVX|B Chain B, Crystal Structure Of Putative Phage Endolysin From S.
Enterica
Length = 106
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 49 NWAGQVGKGGLPPDLAKFATIDEAVAFLIT--NVCELELQG 87
NW G P + F T D+A AFL+ N C++ LQ
Sbjct: 32 NWVIGYGHXLTPDETLTFITPDQAEAFLLDDLNSCDILLQN 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,978,064
Number of Sequences: 62578
Number of extensions: 109195
Number of successful extensions: 255
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 250
Number of HSP's gapped (non-prelim): 16
length of query: 100
length of database: 14,973,337
effective HSP length: 66
effective length of query: 34
effective length of database: 10,843,189
effective search space: 368668426
effective search space used: 368668426
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)