Query 034242
Match_columns 100
No_of_seqs 56 out of 58
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 11:20:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034242.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034242hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12095 DUF3571: Protein of u 100.0 4.9E-45 1.1E-49 249.3 7.4 79 14-100 5-83 (83)
2 PHA03373 tegument protein; Pro 84.1 2.3 4.9E-05 34.6 4.8 58 10-78 13-70 (247)
3 COG2912 Uncharacterized conser 59.3 14 0.0003 30.2 3.7 58 14-79 129-186 (269)
4 PRK10941 hypothetical protein; 54.9 43 0.00094 26.7 5.8 53 20-79 134-186 (269)
5 PLN03107 eukaryotic translatio 48.0 21 0.00044 26.8 2.8 34 15-48 93-132 (159)
6 cd04470 S1_EF-P_repeat_1 S1_EF 44.9 15 0.00033 23.0 1.5 34 15-48 8-41 (61)
7 PF09894 DUF2121: Uncharacteri 44.6 8 0.00017 30.4 0.2 18 11-28 89-106 (194)
8 PLN03145 Protein phosphatase 2 42.0 76 0.0017 26.3 5.5 51 18-84 267-317 (365)
9 PF05721 PhyH: Phytanoyl-CoA d 39.7 27 0.00058 23.6 2.2 19 18-41 2-20 (211)
10 TIGR01795 CM_mono_cladeE monof 39.1 67 0.0015 21.8 4.1 41 36-88 50-93 (94)
11 TIGR02178 yeiP elongation fact 38.8 22 0.00048 27.3 1.8 34 15-48 73-106 (186)
12 PF15435 UNC119_bdg: UNC119-bi 38.0 12 0.00026 29.4 0.3 29 6-34 117-145 (197)
13 PRK14578 elongation factor P; 37.7 23 0.00051 27.2 1.8 34 15-48 75-108 (187)
14 cd02419 Peptidase_C39C A sub-f 36.5 41 0.0009 21.8 2.6 27 18-44 93-119 (127)
15 PF13474 SnoaL_3: SnoaL-like d 33.7 78 0.0017 19.7 3.5 32 20-51 26-57 (121)
16 PF00113 Enolase_C: Enolase, C 33.5 35 0.00076 27.8 2.3 38 14-51 109-150 (295)
17 cd02425 Peptidase_C39F A sub-f 31.7 56 0.0012 21.0 2.6 25 18-42 94-118 (126)
18 COG0055 AtpD F0F1-type ATP syn 31.4 72 0.0016 28.3 3.9 64 5-74 394-460 (468)
19 PF08852 DUF1822: Protein of u 31.4 50 0.0011 27.1 2.9 44 41-93 35-78 (368)
20 cd04436 DEP_fRgd2 DEP (Disheve 31.3 79 0.0017 21.8 3.4 42 39-80 2-43 (84)
21 PF13499 EF-hand_7: EF-hand do 29.9 26 0.00055 20.6 0.7 20 31-50 14-33 (66)
22 TIGR03355 VI_chp_2 type VI sec 29.8 21 0.00046 31.2 0.5 48 21-78 383-431 (473)
23 PF12091 DUF3567: Protein of u 29.4 27 0.00059 24.3 0.9 14 14-28 3-16 (85)
24 PF00159 Hormone_3: Pancreatic 28.9 74 0.0016 18.8 2.6 22 25-46 3-24 (36)
25 PF01132 EFP: Elongation facto 28.3 7.6 0.00016 23.9 -1.8 33 15-47 7-39 (55)
26 cd08320 Pyrin_NALPs Pyrin deat 28.2 1.9E+02 0.004 19.4 4.8 49 33-82 9-57 (86)
27 TIGR01280 xseB exodeoxyribonuc 28.1 98 0.0021 19.9 3.3 25 34-62 1-25 (67)
28 PRK12426 elongation factor P; 28.0 43 0.00093 25.8 1.8 34 15-48 73-106 (185)
29 PRK00529 elongation factor P; 27.8 46 0.001 25.0 1.9 33 15-47 73-105 (186)
30 PF10436 BCDHK_Adom3: Mitochon 27.7 86 0.0019 23.0 3.3 43 36-84 28-70 (164)
31 PRK04542 elongation factor P; 27.5 46 0.001 25.6 1.9 34 15-48 75-108 (189)
32 PTZ00224 protein phosphatase 2 26.7 1.9E+02 0.0042 24.2 5.6 49 19-83 208-257 (381)
33 KOG3424 40S ribosomal protein 26.7 88 0.0019 23.5 3.2 29 22-52 25-53 (132)
34 PF13297 Telomere_Sde2_2: Telo 26.2 2E+02 0.0042 18.9 4.6 37 32-79 5-45 (60)
35 KOG0700 Protein phosphatase 2C 25.8 96 0.0021 26.8 3.7 46 18-80 328-374 (390)
36 COG0231 Efp Translation elonga 25.8 42 0.00092 24.2 1.4 34 15-48 75-108 (131)
37 TIGR00037 eIF_5A translation i 25.2 62 0.0013 23.2 2.2 19 15-33 79-97 (130)
38 PF13986 DUF4224: Domain of un 24.7 47 0.001 20.1 1.3 22 67-88 15-36 (47)
39 cd00126 PAH Pancreatic Hormone 24.4 1.1E+02 0.0024 18.1 2.8 22 25-46 3-24 (36)
40 TIGR00038 efp translation elon 24.1 66 0.0014 24.2 2.2 34 15-48 72-105 (184)
41 cd08203 SAM_PNT Sterile alpha 24.0 1E+02 0.0022 19.5 2.8 27 33-66 4-31 (66)
42 cd02418 Peptidase_C39B A sub-f 24.0 91 0.002 20.3 2.6 24 19-42 100-123 (136)
43 PF07766 LETM1: LETM1-like pro 23.6 67 0.0014 25.3 2.2 20 33-52 238-257 (268)
44 PF08343 RNR_N: Ribonucleotide 23.5 1.6E+02 0.0035 19.8 3.8 22 59-80 34-55 (82)
45 cd04463 S1_EF_like S1_EF_like: 23.3 54 0.0012 19.4 1.3 23 15-37 6-29 (55)
46 PF00481 PP2C: Protein phospha 23.2 66 0.0014 23.9 2.1 46 19-80 200-245 (254)
47 TIGR02408 ectoine_ThpD ectoine 23.1 93 0.002 24.1 2.9 31 12-49 21-51 (277)
48 PF08462 Carmo_coat_C: Carmovi 23.0 52 0.0011 23.6 1.4 10 90-99 90-99 (99)
49 PF07453 NUMOD1: NUMOD1 domain 22.9 52 0.0011 18.1 1.1 14 63-76 13-26 (37)
50 PRK00977 exodeoxyribonuclease 22.9 1.7E+02 0.0038 19.4 3.9 31 28-62 4-34 (80)
51 PF11918 DUF3436: Domain of un 22.8 69 0.0015 20.7 1.8 15 33-47 37-51 (55)
52 PRK05350 acyl carrier protein; 22.7 1.3E+02 0.0028 19.1 3.1 18 34-51 2-19 (82)
53 PF12939 DUF3837: Domain of un 22.6 1.1E+02 0.0024 21.9 3.0 40 29-84 42-81 (102)
54 TIGR01689 EcbF-BcbF capsule bi 22.2 1.5E+02 0.0032 21.1 3.6 36 14-50 35-76 (126)
55 cd08532 SAM_PNT-PDEF-like Ster 22.1 1.2E+02 0.0026 20.2 2.9 29 32-67 11-39 (76)
56 PF13193 AMP-binding_C: AMP-bi 21.9 77 0.0017 19.2 1.9 16 35-50 36-51 (73)
57 cd02420 Peptidase_C39D A sub-f 21.6 1.1E+02 0.0025 19.7 2.7 24 19-42 94-117 (125)
58 PF11338 DUF3140: Protein of u 21.4 56 0.0012 22.9 1.3 17 33-49 7-23 (92)
59 PRK05828 acyl carrier protein; 21.3 1.4E+02 0.003 19.8 3.1 17 34-50 1-17 (84)
60 PRK14063 exodeoxyribonuclease 21.2 1.6E+02 0.0035 19.4 3.4 27 32-62 3-29 (76)
61 PF02037 SAP: SAP domain; Int 20.8 1.1E+02 0.0023 17.1 2.2 13 35-47 23-35 (35)
62 cd02983 P5_C P5 family, C-term 20.6 2E+02 0.0043 20.1 3.9 39 21-60 84-128 (130)
63 PF07293 DUF1450: Protein of u 20.5 95 0.0021 20.9 2.2 24 28-51 53-76 (78)
64 PF06348 DUF1059: Protein of u 20.1 1.9E+02 0.0041 17.9 3.4 27 35-64 21-47 (57)
65 COG4030 Uncharacterized protei 20.1 98 0.0021 26.0 2.6 50 31-88 153-207 (315)
No 1
>PF12095 DUF3571: Protein of unknown function (DUF3571); InterPro: IPR021954 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 85 to 97 amino acids in length. ; PDB: 2KRX_A.
Probab=100.00 E-value=4.9e-45 Score=249.35 Aligned_cols=79 Identities=51% Similarity=0.993 Sum_probs=58.1
Q ss_pred hhhccCCcEEEecCCCCccccCHHHHHHHHHHHHHhhcccCCCCCCChhhhccCCHHHHHHHHHHccccccccCCceeEE
Q 034242 14 MAYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELELQGDVGSIQ 93 (100)
Q Consensus 14 ~my~q~D~YVvLEp~~~EqfLT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CELEi~pg~~~lQ 93 (100)
-|| ++|||||||||+||||||++||++|||+||++. ++||+||+||+|+++||+||++|+|||||||| +|||
T Consensus 5 lm~-~~d~yVvLEp~~~Eqflt~~Ell~~Lk~~L~~~------~~LP~dL~~~~s~~~qa~~Lldt~CeLeigpg-~~lQ 76 (83)
T PF12095_consen 5 LMY-QEDHYVVLEPGQPEQFLTPEELLEKLKEWLQNQ------DDLPPDLAKFSSVEEQAQYLLDTACELEIGPG-GYLQ 76 (83)
T ss_dssp -S------EEEEESSS-SEEE-HHHHHHHHHHHHHHT------TTS-HHHHH---HHHHHHHHHHH---EEEETT-EEEE
T ss_pred hhh-ccCCEEEecCCCCcccCCHHHHHHHHHHHHHcC------CCCCHHHHhCCCHHHHHHHHHHhceeeecCCC-CEEE
Confidence 488 999999999999999999999999999999994 48999999999999999999999999999999 6999
Q ss_pred EEEEeeC
Q 034242 94 WYEVRLE 100 (100)
Q Consensus 94 WYaVRLE 100 (100)
|||||||
T Consensus 77 WyaVRLE 83 (83)
T PF12095_consen 77 WYAVRLE 83 (83)
T ss_dssp EEE----
T ss_pred EEEEecC
Confidence 9999998
No 2
>PHA03373 tegument protein; Provisional
Probab=84.06 E-value=2.3 Score=34.63 Aligned_cols=58 Identities=31% Similarity=0.419 Sum_probs=47.4
Q ss_pred hhhhhhhccCCcEEEecCCCCccccCHHHHHHHHHHHHHhhcccCCCCCCChhhhccCCHHHHHHHHHH
Q 034242 10 RRRRMAYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLIT 78 (100)
Q Consensus 10 ~~~~~my~q~D~YVvLEp~~~EqfLT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lld 78 (100)
=|||-+. .-.||+|-|..+ +..+||.++|++-..+. +-.|.||..|.-..+-..+|+.
T Consensus 13 crr~~~~--~a~Y~lL~~sed---ve~~eL~~flee~f~~l------Git~~Di~~~~rDtEv~khLL~ 70 (247)
T PHA03373 13 CRRRAPD--GAEYVLLRPSED---VELAELEAFLEENFKDF------GITQADIRSLSRDTEVVKHLLQ 70 (247)
T ss_pred hhccCCC--CCceEEecCcch---hhHHHHHHHHHHhHHhc------CcCHHHHHHHhhhhHHHHHHHH
Confidence 3344444 567999998763 77899999999988888 4899999999999999999985
No 3
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=59.27 E-value=14 Score=30.17 Aligned_cols=58 Identities=26% Similarity=0.233 Sum_probs=42.0
Q ss_pred hhhccCCcEEEecCCCCccccCHHHHHHHHHHHHHhhcccCCCCCCChhhhccCCHHHHHHHHHHc
Q 034242 14 MAYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITN 79 (100)
Q Consensus 14 ~my~q~D~YVvLEp~~~EqfLT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt 79 (100)
|++ .+|.+.++.|..++ .++..++..|+++-+.-.. .-+|.+|++-+ ..+-..+|++|
T Consensus 129 R~~-~~~~~~~idP~ng~-~l~~~~l~~~l~~~~~~~a-----el~~~~L~~a~-~~~il~rll~~ 186 (269)
T COG2912 129 RAE-VEDEPLLIDPFNGG-TLSQHELQEWLKGTIGPSA-----ELLPEDLKQAS-NREILSRLLRN 186 (269)
T ss_pred eec-cCCCceeeCCCCCC-cccHHHHHHHHHhccCcHh-----hhhhhhhhhcc-HHHHHHHHHHH
Confidence 566 67799999999999 9999999999999877322 35666666644 44445555444
No 4
>PRK10941 hypothetical protein; Provisional
Probab=54.90 E-value=43 Score=26.71 Aligned_cols=53 Identities=21% Similarity=0.073 Sum_probs=38.0
Q ss_pred CcEEEecCCCCccccCHHHHHHHHHHHHHhhcccCCCCCCChhhhccCCHHHHHHHHHHc
Q 034242 20 ETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITN 79 (100)
Q Consensus 20 D~YVvLEp~~~EqfLT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt 79 (100)
+..+++.|-.. ++||++++..||++.+.... .|.++--+-.|..+-..++++|
T Consensus 134 ~~~~~IDPf~G-~~L~~~~l~~~L~~~~g~~~------~l~~~~L~~a~~~~il~Rml~n 186 (269)
T PRK10941 134 GEMWLINPFNG-ETLDEHTLEVWLKGNISPSA------ELFNEDLDEADNIEVIRKLLDT 186 (269)
T ss_pred CceEEEeCCCC-CCCCHHHHHHHHHhhcCCcc------cCCHHHcCCCCHHHHHHHHHHH
Confidence 34677999874 49999999999997776542 4555555556666777777765
No 5
>PLN03107 eukaryotic translation initiation factor 5A; Provisional
Probab=47.98 E-value=21 Score=26.77 Aligned_cols=34 Identities=9% Similarity=0.315 Sum_probs=27.0
Q ss_pred hhccCCcE-EEecC--CCCccc-cC--HHHHHHHHHHHHH
Q 034242 15 AYSRTETY-VLLEP--GVEEKF-VT--EEELKARLKYWLE 48 (100)
Q Consensus 15 my~q~D~Y-VvLEp--~~~Eqf-LT--~~Ell~~Lk~~L~ 48 (100)
+|.+.|.| ++|.+ ..-||+ |+ ..||.++|+.+..
T Consensus 93 ly~dgd~y~~fMD~~get~eqi~v~~~~~el~~~i~~~f~ 132 (159)
T PLN03107 93 IDISEDGFVSLMDESGNTKDDLKLPTEDDTLAEQIKDGFD 132 (159)
T ss_pred EEEcCCceEEEEcCCCCcceeEEccCcchHHHHHHHHHHh
Confidence 67778897 99988 367777 77 4699999998875
No 6
>cd04470 S1_EF-P_repeat_1 S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with N-formylmethionyl-tRNA and puromycine in vitro. EF-P binds to both the 30S and 50S ribosomal subunits. EF-P binds near the streptomycine binding site of the 16S rRNA in the 30S subunit. EF-P interacts with domains 2 and 5 of the 23S rRNA. The L16 ribosomal protein of the 50S or its N-terminal fragment are required for EF-P mediated peptide bond synthesis, whereas L11, L15, and L7/L12 are not required in this reaction, suggesting that EF-P may function at a different ribosomal site than most other translation factors. EF-P is essential for cell viability and is required for protein synthesis. EF-P is mainly present in bacteria. The EF-P homologs in archaea and eukaryotes are the initiation factors aIF5A and eIF5A, respectively. EF-P
Probab=44.90 E-value=15 Score=22.99 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=25.1
Q ss_pred hhccCCcEEEecCCCCccccCHHHHHHHHHHHHH
Q 034242 15 AYSRTETYVLLEPGVEEKFVTEEELKARLKYWLE 48 (100)
Q Consensus 15 my~q~D~YVvLEp~~~EqfLT~~Ell~~Lk~~L~ 48 (100)
+|.+.|.||++.+..=||+-=+.+.+..=+.||.
T Consensus 8 lY~dg~~~~FMd~etyeQ~~i~~~~igd~~~~L~ 41 (61)
T cd04470 8 LYKDGDNYVFMDTETYEQIELPKEALGDAAKFLK 41 (61)
T ss_pred EEeCCCEEEEeCCCCceEEEECHHHhhhHHhhCc
Confidence 6888999999999999998444555544445554
No 7
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=44.58 E-value=8 Score=30.45 Aligned_cols=18 Identities=28% Similarity=0.564 Sum_probs=15.2
Q ss_pred hhhhhhccCCcEEEecCC
Q 034242 11 RRRMAYSRTETYVLLEPG 28 (100)
Q Consensus 11 ~~~~my~q~D~YVvLEp~ 28 (100)
+|||||-....|+++|=-
T Consensus 89 kRRRiY~t~g~~~Ivei~ 106 (194)
T PF09894_consen 89 KRRRIYATKGKYAIVEIE 106 (194)
T ss_pred eeeEEEecCCCEEEEEec
Confidence 488999999999998743
No 8
>PLN03145 Protein phosphatase 2c; Provisional
Probab=41.99 E-value=76 Score=26.27 Aligned_cols=51 Identities=4% Similarity=-0.021 Sum_probs=40.4
Q ss_pred cCCcEEEecCCCCccccCHHHHHHHHHHHHHhhcccCCCCCCChhhhccCCHHHHHHHHHHcccccc
Q 034242 18 RTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELE 84 (100)
Q Consensus 18 q~D~YVvLEp~~~EqfLT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CELE 84 (100)
..|.|+||-.+-==.++|.+|..+.+...|+.. .+.+++|+.|++.++.--
T Consensus 267 ~~D~fLILaSDGLwdvls~ee~v~~i~~~l~~~----------------~~p~~aa~~Lv~~Al~rg 317 (365)
T PLN03145 267 EEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEH----------------NDPVMCSKELVDEALKRK 317 (365)
T ss_pred CCCEEEEEeCCccccCcCHHHHHHHHHHHHhcC----------------CCHHHHHHHHHHHHHhCC
Confidence 467888888887777999999988888877654 345789999999987653
No 9
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=39.68 E-value=27 Score=23.60 Aligned_cols=19 Identities=26% Similarity=0.595 Sum_probs=13.0
Q ss_pred cCCcEEEecCCCCccccCHHHHHH
Q 034242 18 RTETYVLLEPGVEEKFVTEEELKA 41 (100)
Q Consensus 18 q~D~YVvLEp~~~EqfLT~~Ell~ 41 (100)
++|.|||++. +++++++..
T Consensus 2 ~~~Gyvvi~~-----~l~~~~~~~ 20 (211)
T PF05721_consen 2 RRDGYVVIRN-----VLSPEEVER 20 (211)
T ss_dssp HHHSEEEETT-----SS-HHHHHH
T ss_pred cCCcEEEECC-----cCCHHHHHH
Confidence 5789999964 888855443
No 10
>TIGR01795 CM_mono_cladeE monofunctional chorismate mutase, alpha proteobacterial type. The alpha proteobacterial members are trusted because the pathways of CM are evident and there is only one plausible CM in the genome. In S. coelicolor, however, there is another aparrent monofunctional CM.
Probab=39.12 E-value=67 Score=21.79 Aligned_cols=41 Identities=27% Similarity=0.426 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCCChhhhccCCHHHHHHHHHHcccccc---ccCC
Q 034242 36 EEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELE---LQGD 88 (100)
Q Consensus 36 ~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CELE---i~pg 88 (100)
.+++++++..+-.+. .|||++. ++-.+.+++.+|..+ ++||
T Consensus 50 e~~vl~~~~~~a~~~-------gl~p~~~-----e~i~~~i~~esir~q~~~~~~~ 93 (94)
T TIGR01795 50 EDYQIARLRRLAIDA-------GLDPEFA-----EKFLNFIVTEVIKHHERIADAG 93 (94)
T ss_pred HHHHHHHHHHHHHHC-------CCCHHHH-----HHHHHHHHHHHHHHHHHHhccC
Confidence 467777887777777 7999875 556777888888776 5555
No 11
>TIGR02178 yeiP elongation factor P-like protein YeiP. This model represents the family of Escherichia coli protein YeiP, a close homolog of elongation factor P (TIGR00038) and probably itself a translation factor. Member of this family are found only in some Gammaproteobacteria, including E. coli and Vibrio cholerae.
Probab=38.77 E-value=22 Score=27.31 Aligned_cols=34 Identities=12% Similarity=0.294 Sum_probs=24.8
Q ss_pred hhccCCcEEEecCCCCccccCHHHHHHHHHHHHH
Q 034242 15 AYSRTETYVLLEPGVEEKFVTEEELKARLKYWLE 48 (100)
Q Consensus 15 my~q~D~YVvLEp~~~EqfLT~~Ell~~Lk~~L~ 48 (100)
+|.+.|+||+|.+..=||+.=+++++..=..||.
T Consensus 73 lY~dg~~~~FMD~etyEQ~~i~~~~lgd~~~fL~ 106 (186)
T TIGR02178 73 SYKDGEEYVFMDEEDYTPYTFDKDAIEDELLFIS 106 (186)
T ss_pred EEeCCCeEEEccCCCcEEEEeCHHHhhhhhhhhh
Confidence 6888899999999999999544555544444443
No 12
>PF15435 UNC119_bdg: UNC119-binding protein C5orf30 homologue
Probab=38.04 E-value=12 Score=29.40 Aligned_cols=29 Identities=24% Similarity=0.100 Sum_probs=23.4
Q ss_pred hHHHhhhhhhhccCCcEEEecCCCCcccc
Q 034242 6 ICATRRRRMAYSRTETYVLLEPGVEEKFV 34 (100)
Q Consensus 6 ~~~~~~~~~my~q~D~YVvLEp~~~EqfL 34 (100)
...-||||||=+..|.+.=--|.+|++-|
T Consensus 117 a~nGRRRRRMPSSgd~~~k~lp~ep~kal 145 (197)
T PF15435_consen 117 AVNGRRRRRMPSSGDKCTKSLPYEPYKAL 145 (197)
T ss_pred ccCCcccccCCCCcccccCCCCCCcchhc
Confidence 34568899999999999887788888744
No 13
>PRK14578 elongation factor P; Provisional
Probab=37.72 E-value=23 Score=27.17 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=26.3
Q ss_pred hhccCCcEEEecCCCCccccCHHHHHHHHHHHHH
Q 034242 15 AYSRTETYVLLEPGVEEKFVTEEELKARLKYWLE 48 (100)
Q Consensus 15 my~q~D~YVvLEp~~~EqfLT~~Ell~~Lk~~L~ 48 (100)
+|.+.|+||+|.+..=||+-=+.|++..-..||.
T Consensus 75 lY~dg~~~~FMD~etyEQ~~i~~~~~g~~~~fL~ 108 (187)
T PRK14578 75 LYADGDRGVFMDLETYEQFEMEEDAFSAIAPFLL 108 (187)
T ss_pred EEeCCCEEEEecCCCcEEEEecHHHhhhHHhhcc
Confidence 6888899999999999999555566655555554
No 14
>cd02419 Peptidase_C39C A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=36.48 E-value=41 Score=21.82 Aligned_cols=27 Identities=15% Similarity=0.304 Sum_probs=19.8
Q ss_pred cCCcEEEecCCCCccccCHHHHHHHHH
Q 034242 18 RTETYVLLEPGVEEKFVTEEELKARLK 44 (100)
Q Consensus 18 q~D~YVvLEp~~~EqfLT~~Ell~~Lk 44 (100)
..+.+++..|+.+.+.+|.+|+.+...
T Consensus 93 ~~~~~~i~dp~~~~~~~~~~el~~~~~ 119 (127)
T cd02419 93 SRRRIVIHDPALGKRKLSLEEASRHFT 119 (127)
T ss_pred cCCEEEEECCccCCEEEcHHHHHhhCC
Confidence 445667778887777899999876543
No 15
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=33.74 E-value=78 Score=19.72 Aligned_cols=32 Identities=19% Similarity=0.379 Sum_probs=29.5
Q ss_pred CcEEEecCCCCccccCHHHHHHHHHHHHHhhc
Q 034242 20 ETYVLLEPGVEEKFVTEEELKARLKYWLENWA 51 (100)
Q Consensus 20 D~YVvLEp~~~EqfLT~~Ell~~Lk~~L~~~~ 51 (100)
+.++...++.++.+-+.+++.+.++.+++..+
T Consensus 26 ~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 57 (121)
T PF13474_consen 26 DDFVFFGTGPGEIWRGREAIRAYFERDFESFR 57 (121)
T ss_dssp EEEEEEETTSSSEEESHHHHHHHHHHHHHTHS
T ss_pred CCEEEEcCCCCceECCHHHHHHHHHHHhhhCc
Confidence 88999999999999999999999999998763
No 16
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=33.46 E-value=35 Score=27.76 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=27.4
Q ss_pred hhhc-cCCcEEEec---CCCCccccCHHHHHHHHHHHHHhhc
Q 034242 14 MAYS-RTETYVLLE---PGVEEKFVTEEELKARLKYWLENWA 51 (100)
Q Consensus 14 ~my~-q~D~YVvLE---p~~~EqfLT~~Ell~~Lk~~L~~~~ 51 (100)
.+|. ....|.+-- ++.+.+.+|++||.+..++|+.++|
T Consensus 109 efyd~~~gkY~~~~~~~~~~~~~~~s~delid~y~~li~~YP 150 (295)
T PF00113_consen 109 EFYDEEDGKYDLEFKSKEKDPSRYKSSDELIDYYKDLIKKYP 150 (295)
T ss_dssp GGEETETTEEETTTTSSSSTGGGEEEHHHHHHHHHHHHHHS-
T ss_pred HhhhccCCeEEEeecccccccccccCHHHHHHHHHHHHHhcC
Confidence 3553 334555541 3456789999999999999999999
No 17
>cd02425 Peptidase_C39F A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=31.67 E-value=56 Score=21.02 Aligned_cols=25 Identities=8% Similarity=0.319 Sum_probs=18.8
Q ss_pred cCCcEEEecCCCCccccCHHHHHHH
Q 034242 18 RTETYVLLEPGVEEKFVTEEELKAR 42 (100)
Q Consensus 18 q~D~YVvLEp~~~EqfLT~~Ell~~ 42 (100)
+.+++++..|+.+.+.+|.+|+.+.
T Consensus 94 ~~~~~~i~dp~~~~~~~~~~~l~~~ 118 (126)
T cd02425 94 KKNKVTIVDPAIGRIKISIDEFLEN 118 (126)
T ss_pred ECCEEEEEcCCCCCEEECHHHHHhh
Confidence 3556777889888778999888653
No 18
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=31.37 E-value=72 Score=28.29 Aligned_cols=64 Identities=23% Similarity=0.321 Sum_probs=46.5
Q ss_pred hhHHHhhhhhhhccCCcEEEec--CCCCccccCHHHHHHHHHHHHHhhcccCCCCCCChh-hhccCCHHHHHH
Q 034242 5 KICATRRRRMAYSRTETYVLLE--PGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPD-LAKFATIDEAVA 74 (100)
Q Consensus 5 ~~~~~~~~~~my~q~D~YVvLE--p~~~EqfLT~~Ell~~Lk~~L~~~~~~~~~~~LP~d-L~k~~s~~~qaq 74 (100)
++++..||=+.| =+-.|.|-| +|+|-+|++-+|++.-.+++|..-- |.+|.+ ..-..|++++.+
T Consensus 394 ~~V~rArki~~F-lSQpF~vAE~FTg~pG~~V~l~dti~~fk~Il~G~y-----d~~pE~aF~~vGsi~e~~e 460 (468)
T COG0055 394 LTVARARKIQRF-LSQPFFVAEVFTGSPGKYVPLKDTIRGFKRILEGKY-----DHLPEQAFYMVGSIEEAVE 460 (468)
T ss_pred HHHHHHHHHHHH-hcCcchhhheecCCCceeeeHHHHHHHHHHHhCCCc-----ccCCHHHHhhcCcHHHHHH
Confidence 455555565566 456677777 7899999999999999999998773 578875 344466665543
No 19
>PF08852 DUF1822: Protein of unknown function (DUF1822); InterPro: IPR014951 This group of proteins are functionally uncharacterised.
Probab=31.37 E-value=50 Score=27.13 Aligned_cols=44 Identities=16% Similarity=0.410 Sum_probs=35.7
Q ss_pred HHHHHHHHhhcccCCCCCCChhhhccCCHHHHHHHHHHccccccccCCceeEE
Q 034242 41 ARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELELQGDVGSIQ 93 (100)
Q Consensus 41 ~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CELEi~pg~~~lQ 93 (100)
.-+..||+.+ +.|.++..-++... +..+++++|+|.|+.+ |.|-
T Consensus 35 ~av~~wL~~~-------~~~~~l~~~~~~~~-~~~~~~~V~~l~i~~~-~kl~ 78 (368)
T PF08852_consen 35 FAVENWLQEM-------DIPTNLEVSDSWNP-LPRFWEDVADLQIGDF-GKLE 78 (368)
T ss_pred HHHHHHHHhc-------CCCcCcccCccccH-HHHHHHHccCcEEccC-ceEE
Confidence 3467888888 68899999888887 7788899999999987 5553
No 20
>cd04436 DEP_fRgd2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGAP (GTPase-activator protein) Rgd2-like proteins. Rgd2-like proteins share a common domain architecture, containing, beside the RhoGAP domain, a DEP and a FCH (Fes/CIP4 homology) domain. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5.
Probab=31.28 E-value=79 Score=21.84 Aligned_cols=42 Identities=21% Similarity=0.090 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhcccCCCCCCChhhhccCCHHHHHHHHHHcc
Q 034242 39 LKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNV 80 (100)
Q Consensus 39 ll~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~ 80 (100)
+.+-|+..|++.|-..-+..+|-.-++..|-++-++||.++-
T Consensus 2 lk~lL~~ml~~ip~~~~kvPilGty~nt~sG~~Iv~~L~~n~ 43 (84)
T cd04436 2 LKELLAAMLKEIPLADYKVPILGTYQNTSSGSEIVSWLQENM 43 (84)
T ss_pred HHHHHHHHHHhCCCccceecccccccCcccHHHHHHHHHHcC
Confidence 344455566666544444556666666666666666666653
No 21
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=29.85 E-value=26 Score=20.60 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=15.5
Q ss_pred ccccCHHHHHHHHHHHHHhh
Q 034242 31 EKFVTEEELKARLKYWLENW 50 (100)
Q Consensus 31 EqfLT~~Ell~~Lk~~L~~~ 50 (100)
--++|.+|+...++......
T Consensus 14 ~G~i~~~el~~~~~~~~~~~ 33 (66)
T PF13499_consen 14 DGYISKEELRRALKHLGRDM 33 (66)
T ss_dssp SSEEEHHHHHHHHHHTTSHS
T ss_pred cCCCCHHHHHHHHHHhcccc
Confidence 35689999999888877655
No 22
>TIGR03355 VI_chp_2 type VI secretion protein, EvpB/VC_A0108 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=29.82 E-value=21 Score=31.22 Aligned_cols=48 Identities=13% Similarity=0.315 Sum_probs=34.6
Q ss_pred cEE-EecCCCCccccCHHHHHHHHHHHHHhhcccCCCCCCChhhhccCCHHHHHHHHHH
Q 034242 21 TYV-LLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLIT 78 (100)
Q Consensus 21 ~YV-vLEp~~~EqfLT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lld 78 (100)
||+ |+--++-=.|.|++++..+|.+||.++-. ..+ .+|.+-+|+|=+.
T Consensus 383 HYlKv~~Rd~IGs~~~~~~~e~~Ln~Wi~~Yv~-------~~~---~~~~~~~ar~PLr 431 (473)
T TIGR03355 383 HYLKVIQRDKIGSFKERADLERELNNWINQYVS-------DND---DPSQEVKARRPLR 431 (473)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcc-------CCC---CCCHHHHhhCCcc
Confidence 566 66666777899999999999999999942 111 3566666666444
No 23
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=29.45 E-value=27 Score=24.33 Aligned_cols=14 Identities=29% Similarity=0.617 Sum_probs=11.9
Q ss_pred hhhccCCcEEEecCC
Q 034242 14 MAYSRTETYVLLEPG 28 (100)
Q Consensus 14 ~my~q~D~YVvLEp~ 28 (100)
++| ++|+|+|++=+
T Consensus 3 miY-nSd~y~VV~~~ 16 (85)
T PF12091_consen 3 MIY-NSDNYCVVEFP 16 (85)
T ss_pred eee-cCCceEEEEec
Confidence 689 99999999854
No 24
>PF00159 Hormone_3: Pancreatic hormone peptide; InterPro: IPR001955 Pancreatic hormone (PP) [] is a peptide synthesized in pancreatic islets of Langherhans, which acts as a regulator of pancreatic and gastrointestinal functions. The hormone is produced as a larger propeptide, which is enzymatically cleaved to yield the mature active peptide: this is 36 amino acids in length [] and has an amidated C terminus []. The hormone has a globular structure, residues 2-8 forming a left-handed poly-proline-II-like helix, residues 9-13 a beta turn, and 14-32 an alpha-helix,held close to the first helix by hydrophobic interactions []. Unlike glucagon, another peptide hormone, the structure of pancreatic peptide is preserved in aqueous solution []. Both N and C termini are required for activity: receptor binding and activation functions may reside in the N and C termini respectively []. Pancreatic hormone is part of a wider family of active peptides that includes: Neuropeptide Y (NPY) [], one of the most abundant peptides in the mammalian nervous system. NPY is implicated in the control of feeding and the secretion of the gonadotrophin-releasing hormone. Peptide YY (PYY) []. PPY is a gut peptide that inhibits exocrine pancreatic secretion, has a vasoconstrictory action and inhibits jejunal and colonic mobility. Various NPY and PYY-like polypeptides from fish and amphibians [, ]. Neuropeptide F (NPF) from invertebrates such as worms and snail. Skin peptide Tyr-Tyr (SPYY) from the frog Phyllomedusa bicolor. SPYY shows a large spectra of antibacterial and antifungal activity. All these peptides are 36 to 39 amino acids long. Like most active peptides, their C-terminal is amidated and they are synthesized as larger protein precursors.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1LJV_A 1BBA_A 1V1D_A 1PPT_A 2H3T_A 2H4B_A 2BF9_A 2H3S_B 1K8V_A 2DF0_A ....
Probab=28.90 E-value=74 Score=18.81 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=16.8
Q ss_pred ecCCCCccccCHHHHHHHHHHH
Q 034242 25 LEPGVEEKFVTEEELKARLKYW 46 (100)
Q Consensus 25 LEp~~~EqfLT~~Ell~~Lk~~ 46 (100)
..|..|+.|-|++||...+.++
T Consensus 3 ~~P~~P~~~aspeel~~Y~~~L 24 (36)
T PF00159_consen 3 SKPERPGDFASPEELAQYYAAL 24 (36)
T ss_dssp SSSSSSSTTSSHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHH
Confidence 4677889999999987766543
No 25
>PF01132 EFP: Elongation factor P (EF-P) OB domain; InterPro: IPR001059 Elongation factor P (EF-P) is a prokaryotic protein translation factor required for efficient peptide bond synthesis on 70S ribosomes from fMet-tRNAfMet []. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. This entry reresents the central domain of elongation factor P and its homologues. It forms an oligonucleotide-binding (OB) fold, though it is not clear if this region is involved in binding nucleic acids [].; GO: 0003746 translation elongation factor activity, 0006414 translational elongation; PDB: 1YBY_A 3A5Z_H 3TRE_A 1UEB_B 3HUW_V 3HUY_V 3OYY_B.
Probab=28.28 E-value=7.6 Score=23.87 Aligned_cols=33 Identities=15% Similarity=0.306 Sum_probs=22.7
Q ss_pred hhccCCcEEEecCCCCccccCHHHHHHHHHHHH
Q 034242 15 AYSRTETYVLLEPGVEEKFVTEEELKARLKYWL 47 (100)
Q Consensus 15 my~q~D~YVvLEp~~~EqfLT~~Ell~~Lk~~L 47 (100)
+|.+.|+||++.+..=||+-=+.+.+..-..||
T Consensus 7 lY~dgd~~~FMd~etyeQi~v~~~~~g~~~~~L 39 (55)
T PF01132_consen 7 LYKDGDNYVFMDTETYEQIEVPKDQLGDALKFL 39 (55)
T ss_dssp EEEESSEEEEEETTT--EEEEEHHHHTTTGCC-
T ss_pred EEeCCCEEEEecCCCceEEEecHHHhChHHhhC
Confidence 588999999999999999876666664444443
No 26
>cd08320 Pyrin_NALPs Pyrin death domain found in NALP proteins. Pyrin Death Domain found in NALP (NACHT, LRR and PYD domains) proteins including NALP1 (CARD7, NLRP1), NALP3 (NLRP3, Cryopyrin, CIAS1), and NALP12 (NLRP12, Monarch-1), among others. Mammals contains at least 14 NALP proteins, named NALP1-14 (or NLRP1-14). NALPs are members of the NBS-LRR family of proteins possessing a tripartite domain structure including a C-terminal LRR (leucine-rich repeats), a central nucleotide-binding site (NBS) domain or NACHT (for neuronal apoptosis inhibitor protein, CIITA, HET-E and TP1), and an N-terminal protein-protein interaction domain, which is a Pyrin domain in the case of NALPs. The NBS-LRR family is also referred to as the NLR (Nod-like Receptor) or CATERPILLER (for CARD, transcription enhancer, R-(purine)-binding, pyrin, lots of LRRs) family. NALP1 contains an additional Caspase activation and recruitment domain (CARD) at the C-terminus. NALP1 and NALP3 are both involved in the assembly
Probab=28.22 E-value=1.9e+02 Score=19.36 Aligned_cols=49 Identities=22% Similarity=0.209 Sum_probs=38.1
Q ss_pred ccCHHHHHHHHHHHHHhhcccCCCCCCChhhhccCCHHHHHHHHHHcccc
Q 034242 33 FVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCE 82 (100)
Q Consensus 33 fLT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CE 82 (100)
-||++|+ .+.|..|.+.+...|...+|..--+-.|..+=|..|++.+.+
T Consensus 9 ~L~~~El-kkFK~~L~~~~~~~~~~~Ip~~~le~ad~~dLa~lLv~~y~~ 57 (86)
T cd08320 9 ELSKEEL-KKFKLLLKTEPLQSGLKPIPWTEVKKADGEDLAELLVEHYGG 57 (86)
T ss_pred HcCHHHH-HHHHHHHhccchhccCCCCChHhHhcCCHHHHHHHHHHHcCh
Confidence 4777776 467888888765567778998777778888889999988865
No 27
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=28.05 E-value=98 Score=19.94 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=20.5
Q ss_pred cCHHHHHHHHHHHHHhhcccCCCCCCChh
Q 034242 34 VTEEELKARLKYWLENWAGQVGKGGLPPD 62 (100)
Q Consensus 34 LT~~Ell~~Lk~~L~~~~~~~~~~~LP~d 62 (100)
+|-+|.++.|..+++++..+ ++|-|
T Consensus 1 ~sfEe~l~~Le~Iv~~LE~~----~l~Le 25 (67)
T TIGR01280 1 LSFEEALSELEQIVQKLESG----DLALE 25 (67)
T ss_pred CCHHHHHHHHHHHHHHHHCC----CCCHH
Confidence 57789999999999999863 66654
No 28
>PRK12426 elongation factor P; Provisional
Probab=28.00 E-value=43 Score=25.78 Aligned_cols=34 Identities=21% Similarity=0.362 Sum_probs=24.3
Q ss_pred hhccCCcEEEecCCCCccccCHHHHHHHHHHHHH
Q 034242 15 AYSRTETYVLLEPGVEEKFVTEEELKARLKYWLE 48 (100)
Q Consensus 15 my~q~D~YVvLEp~~~EqfLT~~Ell~~Lk~~L~ 48 (100)
+|.+.|+||+|.+..=||+-=+.|++..=..||.
T Consensus 73 lY~dg~~~~FMd~etyeQi~i~~~~lgd~~~fL~ 106 (185)
T PRK12426 73 LYLEGDEYLFLDLGNYDKIYIPKEIMKDNFLFLK 106 (185)
T ss_pred EEECCCeEEEecCCCceEEEeCHHHhhhHHhhcc
Confidence 6888999999999999999444445543344443
No 29
>PRK00529 elongation factor P; Validated
Probab=27.79 E-value=46 Score=25.00 Aligned_cols=33 Identities=15% Similarity=0.307 Sum_probs=22.3
Q ss_pred hhccCCcEEEecCCCCccccCHHHHHHHHHHHH
Q 034242 15 AYSRTETYVLLEPGVEEKFVTEEELKARLKYWL 47 (100)
Q Consensus 15 my~q~D~YVvLEp~~~EqfLT~~Ell~~Lk~~L 47 (100)
+|.+.|+|++|.+..-||+-=+.+.+..-..||
T Consensus 73 ly~dgd~~~fMD~etyeq~~l~~~~lg~~~~~L 105 (186)
T PRK00529 73 LYNDGDGYVFMDTETYEQIEVPADQVGDAAKFL 105 (186)
T ss_pred EEECCCEEEEecCCCceeeEcCHHHhHHHHhhc
Confidence 577788999999987788744444444334444
No 30
>PF10436 BCDHK_Adom3: Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase; InterPro: IPR018955 Catabolism and synthesis of leucine, isoleucine and valine are finely balanced, allowing the body to make the most of dietary input but removing excesses to prevent toxic build-up of their corresponding keto-acids. Regulating the activity of the branched-chain alpha-ketoacid dehydrogenase (BCDH) complex is the primary means by which these processes are coordinated. BCDH kinase regulates BCDH by phosphorylation, thereby inactivating it when synthesis is required. Pyruvate dehydrogenase kinase inhibits the pyruvate dehydrogenase complex by phosphorylation of the E1 alpha subunit, thus contributing to the regulation of glucose metabolism. It is also involved in telomere maintenance. This entry is associated with IPR003594 from INTERPRO which is found towards the C terminus. ; PDB: 1GKX_A 1GJV_A 1GKZ_A 1JM6_B 3CRL_B 3CRK_B 1Y8O_A 2PNR_A 1Y8P_A 1Y8N_A ....
Probab=27.71 E-value=86 Score=23.03 Aligned_cols=43 Identities=23% Similarity=0.324 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCCChhhhccCCHHHHHHHHHHcccccc
Q 034242 36 EEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELE 84 (100)
Q Consensus 36 ~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CELE 84 (100)
..||.-+|...+...+ .||..+..-+++..-.++-+++.++|-
T Consensus 28 ~~ELpvRlA~ri~~l~------~LP~~l~~~p~i~~V~~~Y~~sF~~L~ 70 (164)
T PF10436_consen 28 RRELPVRLAHRIRELQ------NLPYILVSNPSIQQVYEWYLQSFEELR 70 (164)
T ss_dssp HHHHHHHHHHHHHHHT------TS-HHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH------hCChhhccChhHHHHHHHHHHHHHHHH
Confidence 5688999999999994 899999999999999999999988874
No 31
>PRK04542 elongation factor P; Provisional
Probab=27.48 E-value=46 Score=25.64 Aligned_cols=34 Identities=9% Similarity=0.237 Sum_probs=24.2
Q ss_pred hhccCCcEEEecCCCCccccCHHHHHHHHHHHHH
Q 034242 15 AYSRTETYVLLEPGVEEKFVTEEELKARLKYWLE 48 (100)
Q Consensus 15 my~q~D~YVvLEp~~~EqfLT~~Ell~~Lk~~L~ 48 (100)
+|.+.|+||++.+..=||+-=+.+++..=..||.
T Consensus 75 lY~dg~~~~FMd~etyEQ~~i~~~~lgd~~~~L~ 108 (189)
T PRK04542 75 SYIDGDEYVFMDNEDYTPYTFKKDQIEDELLFIP 108 (189)
T ss_pred EEeCCCEEEEecCCCceEEEECHHHhhhHhhhhh
Confidence 6888899999999989999444455544444443
No 32
>PTZ00224 protein phosphatase 2C; Provisional
Probab=26.73 E-value=1.9e+02 Score=24.15 Aligned_cols=49 Identities=16% Similarity=0.131 Sum_probs=35.0
Q ss_pred CCcEEEecCCC-CccccCHHHHHHHHHHHHHhhcccCCCCCCChhhhccCCHHHHHHHHHHccccc
Q 034242 19 TETYVLLEPGV-EEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCEL 83 (100)
Q Consensus 19 ~D~YVvLEp~~-~EqfLT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CEL 83 (100)
.+.|+||-.+- -+..+|.+|+.+-++..++.. .+++++|+.|++.+++-
T Consensus 208 ~~D~llLaSDGL~d~~ls~eEi~~iv~~~l~~~----------------~~~~~aA~~Lv~~A~~r 257 (381)
T PTZ00224 208 SNDFIILACDGVFEGNFSNEEVVAFVKEQLETC----------------DDLAVVAGRVCDEAIRR 257 (381)
T ss_pred CCCEEEEECCCcCcCccCHHHHHHHHHHHHhcC----------------CCHHHHHHHHHHHHHhc
Confidence 34467776664 455899999988776655433 45788999999988764
No 33
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=26.65 E-value=88 Score=23.50 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=25.4
Q ss_pred EEEecCCCCccccCHHHHHHHHHHHHHhhcc
Q 034242 22 YVLLEPGVEEKFVTEEELKARLKYWLENWAG 52 (100)
Q Consensus 22 YVvLEp~~~EqfLT~~Ell~~Lk~~L~~~~~ 52 (100)
-+||-||.+ .+|.+|+.++|...-..-|+
T Consensus 25 vdvlHPG~a--~vsK~EirEKla~mYkt~~d 53 (132)
T KOG3424|consen 25 VDVLHPGKA--NVSKTEIREKLAKMYKTTPD 53 (132)
T ss_pred EEEecCCCC--CCCHHHHHHHHHHHhcCCcc
Confidence 568999986 69999999999999888775
No 34
>PF13297 Telomere_Sde2_2: Telomere stability C-terminal
Probab=26.20 E-value=2e+02 Score=18.90 Aligned_cols=37 Identities=32% Similarity=0.221 Sum_probs=28.2
Q ss_pred cccCHHHH----HHHHHHHHHhhcccCCCCCCChhhhccCCHHHHHHHHHHc
Q 034242 32 KFVTEEEL----KARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITN 79 (100)
Q Consensus 32 qfLT~~El----l~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt 79 (100)
.|=|.+|| +++||.-|+.+-- ..=+|+++.|++|.-+
T Consensus 5 ~f~sa~eLe~lGldrLK~~L~a~GL-----------KcGGTl~ERA~RLfs~ 45 (60)
T PF13297_consen 5 AFSSAEELEALGLDRLKSALMALGL-----------KCGGTLQERAARLFSV 45 (60)
T ss_pred hcCCHHHHHHhCHHHHHHHHHHcCC-----------ccCCCHHHHHHHHHHh
Confidence 45677777 5789999998843 3338999999999754
No 35
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=25.83 E-value=96 Score=26.81 Aligned_cols=46 Identities=11% Similarity=0.303 Sum_probs=38.0
Q ss_pred cCCcEEEecCCCCccccCHHHHHHHHHHHHHh-hcccCCCCCCChhhhccCCHHHHHHHHHHcc
Q 034242 18 RTETYVLLEPGVEEKFVTEEELKARLKYWLEN-WAGQVGKGGLPPDLAKFATIDEAVAFLITNV 80 (100)
Q Consensus 18 q~D~YVvLEp~~~EqfLT~~Ell~~Lk~~L~~-~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~ 80 (100)
..|.|+||-.+-==++||.+|...-..+++.+ .|+ ...|+|||..+
T Consensus 328 p~DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~~pd-----------------~~~A~hLIr~a 374 (390)
T KOG0700|consen 328 PNDKFLILASDGLWEYLSNEEAVSLVHEFISGKFPD-----------------GNPATHLIRHA 374 (390)
T ss_pred CCCeEEEEeccchhhhcChHHHHHHHHHhhccCCCC-----------------CCHHHHHHHHH
Confidence 56999999999999999999999999999887 554 24678887653
No 36
>COG0231 Efp Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]
Probab=25.80 E-value=42 Score=24.20 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=27.6
Q ss_pred hhccCCcEEEecCCCCccccCHHHHHHHHHHHHH
Q 034242 15 AYSRTETYVLLEPGVEEKFVTEEELKARLKYWLE 48 (100)
Q Consensus 15 my~q~D~YVvLEp~~~EqfLT~~Ell~~Lk~~L~ 48 (100)
.|.+.|.||++.+..=||+-=+.+.......||.
T Consensus 75 lY~dg~~~~FMD~etyeq~~v~~~~~~d~~~~l~ 108 (131)
T COG0231 75 LYIDGDFYVFMDLETYEQYELPKDQIGDAAKFLK 108 (131)
T ss_pred EEcCCCeEEEccCCCceEEEecchhhhhHHHhcC
Confidence 6889999999999999998777776666666654
No 37
>TIGR00037 eIF_5A translation initiation factor eIF-5A. Observed in eukaryotes and archaea.
Probab=25.20 E-value=62 Score=23.20 Aligned_cols=19 Identities=11% Similarity=-0.141 Sum_probs=16.8
Q ss_pred hhccCCcEEEecCCCCccc
Q 034242 15 AYSRTETYVLLEPGVEEKF 33 (100)
Q Consensus 15 my~q~D~YVvLEp~~~Eqf 33 (100)
+|.+.|.|++|.+..-||+
T Consensus 79 lY~dg~~~~fMd~etyeq~ 97 (130)
T TIGR00037 79 LAIMGGMVQLMDLDTYETD 97 (130)
T ss_pred EEecCCEEEEEcCCCcEEE
Confidence 6878889999999988887
No 38
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=24.70 E-value=47 Score=20.12 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=15.9
Q ss_pred CCHHHHHHHHHHccccccccCC
Q 034242 67 ATIDEAVAFLITNVCELELQGD 88 (100)
Q Consensus 67 ~s~~~qaq~Lldt~CELEi~pg 88 (100)
.-...|+++|-.+.=-..+.++
T Consensus 15 k~~~~Q~~~L~~~Gi~~~~~~~ 36 (47)
T PF13986_consen 15 KRPSKQIRWLRRNGIPFVVRAD 36 (47)
T ss_pred CCHHHHHHHHHHCCCeeEECCC
Confidence 4567788888888776666665
No 39
>cd00126 PAH Pancreatic Hormone domain, a regulator of pancreatic and gastrointestinal functions; neuropeptide Y (NPY)b, peptide YY (PYY), and pancreatic polypetide (PP) are closely related; propeptide is enzymatically cleaved to yield the mature active peptide with amidated C-terminal ends; receptor binding and activation functions may reside in the N- and C-termini respectively; occurs in neurons, intestinal endocrine cells, and pancreas; exist as monomers and dimers
Probab=24.36 E-value=1.1e+02 Score=18.11 Aligned_cols=22 Identities=23% Similarity=0.185 Sum_probs=17.6
Q ss_pred ecCCCCccccCHHHHHHHHHHH
Q 034242 25 LEPGVEEKFVTEEELKARLKYW 46 (100)
Q Consensus 25 LEp~~~EqfLT~~Ell~~Lk~~ 46 (100)
.+|..|..|-|++||...++++
T Consensus 3 ~~P~~Pg~~a~~eel~~Y~~~L 24 (36)
T cd00126 3 SKPENPGDDASPEELRQYLAAL 24 (36)
T ss_pred CCCCCCCCCCCHHHHHHHHHHH
Confidence 4678888999999998877664
No 40
>TIGR00038 efp translation elongation factor P. function: involved in peptide bond synthesis. stimulate efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase (by similarity). The trusted cutoff of this model is set high enough to exclude members of TIGR02178, an EFP-like protein of certain Gammaproteobacteria.
Probab=24.08 E-value=66 Score=24.15 Aligned_cols=34 Identities=18% Similarity=0.377 Sum_probs=24.2
Q ss_pred hhccCCcEEEecCCCCccccCHHHHHHHHHHHHH
Q 034242 15 AYSRTETYVLLEPGVEEKFVTEEELKARLKYWLE 48 (100)
Q Consensus 15 my~q~D~YVvLEp~~~EqfLT~~Ell~~Lk~~L~ 48 (100)
+|.+.|+|++|.+..-||+-=+.+++..-..||.
T Consensus 72 ly~dgd~~~fMD~etyeq~~i~~~~l~~~~~~L~ 105 (184)
T TIGR00038 72 LYKDGDSYVFMDTETYEQIELPKDLLGDAAKFLK 105 (184)
T ss_pred EEECCCEEEEeCCCCccceEcCHHHHHHHHhhcC
Confidence 5777789999998888888555555554455554
No 41
>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain. Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti
Probab=24.05 E-value=1e+02 Score=19.49 Aligned_cols=27 Identities=33% Similarity=0.689 Sum_probs=22.4
Q ss_pred ccCHHHHHHHHHHHHHhhcccCCCCCCCh-hhhcc
Q 034242 33 FVTEEELKARLKYWLENWAGQVGKGGLPP-DLAKF 66 (100)
Q Consensus 33 fLT~~Ell~~Lk~~L~~~~~~~~~~~LP~-dL~k~ 66 (100)
.=|++...+||.-..... +||+ ++.+|
T Consensus 4 ~Wt~~~V~~Wl~w~~~~f-------~L~~~~~~~F 31 (66)
T cd08203 4 LWTKEHVLQWLEWAVKEF-------SLPPIDFSKF 31 (66)
T ss_pred hCCHHHHHHHHHHHHHhc-------CCCCCChhhc
Confidence 358899999999988888 6776 88888
No 42
>cd02418 Peptidase_C39B A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=23.95 E-value=91 Score=20.29 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=16.7
Q ss_pred CCcEEEecCCCCccccCHHHHHHH
Q 034242 19 TETYVLLEPGVEEKFVTEEELKAR 42 (100)
Q Consensus 19 ~D~YVvLEp~~~EqfLT~~Ell~~ 42 (100)
.+.+++..|+...+.+|.+|+.+.
T Consensus 100 ~~~~~i~dp~~~~~~~~~~ef~~~ 123 (136)
T cd02418 100 KKKILIADPAVGITKISKEEFEKE 123 (136)
T ss_pred CCEEEEECCCCCCEEeeHHHHHhh
Confidence 344556678777778888887653
No 43
>PF07766 LETM1: LETM1-like protein; InterPro: IPR011685 This is a group of mainly hypothetical eukaryotic proteins. Putative features found in LETM1, such as a transmembrane domain and a CK2 and PKC phosphorylation site [], are relatively conserved throughout the family. Deletion of LETM1 is thought to be involved in the development of Wolf-Hirschhorn syndrome in humans []. A member of this family, P91927 from SWISSPROT, is known to be expressed in the mitochondria of Drosophila melanogaster [], suggesting that this may be a group of mitochondrial proteins.; PDB: 3SKQ_A.
Probab=23.58 E-value=67 Score=25.32 Aligned_cols=20 Identities=40% Similarity=0.577 Sum_probs=15.3
Q ss_pred ccCHHHHHHHHHHHHHhhcc
Q 034242 33 FVTEEELKARLKYWLENWAG 52 (100)
Q Consensus 33 fLT~~Ell~~Lk~~L~~~~~ 52 (100)
-+|.+++..||+.||+-.-.
T Consensus 238 ~~s~~~lr~~L~~WL~ls~~ 257 (268)
T PF07766_consen 238 GLSEEELREWLKQWLQLSSN 257 (268)
T ss_dssp T--HHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcc
Confidence 47999999999999987754
No 44
>PF08343 RNR_N: Ribonucleotide reductase N-terminal; InterPro: IPR013554 This domain is found at the N terminus of bacterial ribonucleoside-diphosphate reductases (ribonucleotide reductases, RNRs) which catalyse the formation of deoxyribonucleotides []. It occurs together with the RNR all-alpha domain (IPR013509 from INTERPRO) and the RNR barrel domain (IPR000788 from INTERPRO). ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0006260 DNA replication, 0055114 oxidation-reduction process, 0005971 ribonucleoside-diphosphate reductase complex; PDB: 1PEM_A 2BQ1_E 1PEU_A 1PEQ_A 1PEO_A.
Probab=23.54 E-value=1.6e+02 Score=19.83 Aligned_cols=22 Identities=27% Similarity=0.632 Sum_probs=15.5
Q ss_pred CChhhhccCCHHHHHHHHHHcc
Q 034242 59 LPPDLAKFATIDEAVAFLITNV 80 (100)
Q Consensus 59 LP~dL~k~~s~~~qaq~Lldt~ 80 (100)
.-|-..+|.|+.+...||+++-
T Consensus 34 V~pnt~~F~S~~Erl~yLv~~~ 55 (82)
T PF08343_consen 34 VNPNTVKFNSLKERLDYLVEND 55 (82)
T ss_dssp TGGGB---SSHHHHHHHHHHTT
T ss_pred cccceeecCCHHHHHHHHHHcC
Confidence 3345679999999999999874
No 45
>cd04463 S1_EF_like S1_EF_like: EF-like, S1-like RNA-binding domain. The EF-like superfamily contains the bacterial translation elongation factor P and its archeal and eukaryotic homologs, aIF5A and eIF5A. All proteins in this superfamily contain an S1 domain, which binds RNA or single-stranded DNA and often interacts with the ribosome. Hex-1, the SI-like domain of which is also found in this group, is structurally homologous to eIF5A and might have evolved from an ancestral eIF5A through gene duplication.
Probab=23.28 E-value=54 Score=19.45 Aligned_cols=23 Identities=13% Similarity=-0.025 Sum_probs=18.4
Q ss_pred hhccCCcEEEecCCCCccc-cCHH
Q 034242 15 AYSRTETYVLLEPGVEEKF-VTEE 37 (100)
Q Consensus 15 my~q~D~YVvLEp~~~Eqf-LT~~ 37 (100)
+|.+.++|+++.+..-||+ ++++
T Consensus 6 lY~dg~~~~fMd~etyeq~~v~~~ 29 (55)
T cd04463 6 LDIQGSKPVTMDLETYEVVQVPPP 29 (55)
T ss_pred EEcCCCEeEEecCCCceEEEeCHH
Confidence 6878899999998878888 5444
No 46
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=23.20 E-value=66 Score=23.94 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=36.2
Q ss_pred CCcEEEecCCCCccccCHHHHHHHHHHHHHhhcccCCCCCCChhhhccCCHHHHHHHHHHcc
Q 034242 19 TETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNV 80 (100)
Q Consensus 19 ~D~YVvLEp~~~EqfLT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~ 80 (100)
.|.|+||-.+-==.+||.+|+..-++..+... .+...+|+.|++.+
T Consensus 200 ~d~flvlaSDGlwd~l~~~ei~~~v~~~~~~~----------------~~~~~~a~~L~~~A 245 (254)
T PF00481_consen 200 DDEFLVLASDGLWDVLSNEEIVDIVRESLNSG----------------RSPQEAAEKLVDEA 245 (254)
T ss_dssp TEEEEEEE-HHHHTTSHHHHHHHHHHHHHHHH----------------SHHHHHHHHHHHHH
T ss_pred cceEEEEEcccccccCCHHHHHHHHHHHHhcC----------------CcHHHHHHHHHHHH
Confidence 36799998886667999999999999988876 25677888888754
No 47
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=23.12 E-value=93 Score=24.12 Aligned_cols=31 Identities=23% Similarity=0.461 Sum_probs=20.6
Q ss_pred hhhhhccCCcEEEecCCCCccccCHHHHHHHHHHHHHh
Q 034242 12 RRMAYSRTETYVLLEPGVEEKFVTEEELKARLKYWLEN 49 (100)
Q Consensus 12 ~~~my~q~D~YVvLEp~~~EqfLT~~Ell~~Lk~~L~~ 49 (100)
-+..| ++|.||+| +.+||++|+. .|+..+..
T Consensus 21 qi~~f-~~dGyvvl-----~~vls~eev~-~lr~~i~~ 51 (277)
T TIGR02408 21 QLQSY-ERDGFLLL-----ENLFSDDEVA-ALLAEVER 51 (277)
T ss_pred HHHHH-HHCCEEEC-----cccCCHHHHH-HHHHHHHH
Confidence 34678 99999998 4688886654 34444433
No 48
>PF08462 Carmo_coat_C: Carmovirus coat protein; InterPro: IPR013669 This domain is found to the C terminus of the IPR000937 from INTERPRO domain in Carmoviruses. The coat protein of the Turnip crinkle virus (TCV; Tombusviridae) is a suppressor of RNA silencing and is required for cell to cell movement in its host []. The plant cellular trafficking machinery could hijack functional viral proteins to permit cell-to-cell movement of RNA silencing []. The 3'-proximal coat protein is coded by ORF4 [].; PDB: 1OPO_B.
Probab=22.95 E-value=52 Score=23.62 Aligned_cols=10 Identities=40% Similarity=1.049 Sum_probs=5.4
Q ss_pred eeEEEEEEee
Q 034242 90 GSIQWYEVRL 99 (100)
Q Consensus 90 ~~lQWYaVRL 99 (100)
..||||+-|.
T Consensus 90 ~~LqWyVsR~ 99 (99)
T PF08462_consen 90 QPLQWYVSRM 99 (99)
T ss_dssp ---EEEEEE-
T ss_pred cceeEEEEeC
Confidence 4799999884
No 49
>PF07453 NUMOD1: NUMOD1 domain; InterPro: IPR010896 This helix-turn-helix-containing DNA-binding domain is found associated in homing nucleases [].
Probab=22.94 E-value=52 Score=18.13 Aligned_cols=14 Identities=36% Similarity=0.691 Sum_probs=12.6
Q ss_pred hhccCCHHHHHHHH
Q 034242 63 LAKFATIDEAVAFL 76 (100)
Q Consensus 63 L~k~~s~~~qaq~L 76 (100)
+..|+|+.++|.+|
T Consensus 13 i~~F~Si~eAa~~l 26 (37)
T PF07453_consen 13 IKSFDSIREAARYL 26 (37)
T ss_pred EEEEcCHHHHHHHh
Confidence 68899999999987
No 50
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=22.92 E-value=1.7e+02 Score=19.37 Aligned_cols=31 Identities=23% Similarity=0.208 Sum_probs=25.0
Q ss_pred CCCccccCHHHHHHHHHHHHHhhcccCCCCCCChh
Q 034242 28 GVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPD 62 (100)
Q Consensus 28 ~~~EqfLT~~Ell~~Lk~~L~~~~~~~~~~~LP~d 62 (100)
..+.+-+|-++.++.|..++.++..+ ++|-|
T Consensus 4 ~~~~~~~sfEea~~~LEeIv~~LE~~----~l~Le 34 (80)
T PRK00977 4 AKKSKPLSFEEALAELEEIVTRLESG----DLPLE 34 (80)
T ss_pred ccCCCcCCHHHHHHHHHHHHHHHHCC----CCCHH
Confidence 34556689999999999999999863 77765
No 51
>PF11918 DUF3436: Domain of unknown function (DUF3436); InterPro: IPR024591 This uncharacterised N-terminal domain is associated with the interphotoreceptor retinol-binding protein family. It is about 50 amino acids in length and has two conserved sequence motifs: DPRL and SYEP.
Probab=22.81 E-value=69 Score=20.75 Aligned_cols=15 Identities=33% Similarity=0.257 Sum_probs=12.5
Q ss_pred ccCHHHHHHHHHHHH
Q 034242 33 FVTEEELKARLKYWL 47 (100)
Q Consensus 33 fLT~~Ell~~Lk~~L 47 (100)
-||+|||+++|+.-+
T Consensus 37 ~Lt~EqLla~lq~~i 51 (55)
T PF11918_consen 37 NLTPEQLLAMLQKSI 51 (55)
T ss_pred CcCHHHHHHHHHhhe
Confidence 589999999998643
No 52
>PRK05350 acyl carrier protein; Provisional
Probab=22.68 E-value=1.3e+02 Score=19.10 Aligned_cols=18 Identities=33% Similarity=0.368 Sum_probs=15.4
Q ss_pred cCHHHHHHHHHHHHHhhc
Q 034242 34 VTEEELKARLKYWLENWA 51 (100)
Q Consensus 34 LT~~Ell~~Lk~~L~~~~ 51 (100)
+|.+++.++++++|++..
T Consensus 2 m~~~~i~~~v~~ii~~~~ 19 (82)
T PRK05350 2 MTREEILERLRAILVELF 19 (82)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 578899999999998875
No 53
>PF12939 DUF3837: Domain of unknown function (DUF3837); InterPro: IPR024212 This entry represents a small, compact all-alpha helical domain of unknown function. This domain is currently only found in Clostridiales species.
Probab=22.59 E-value=1.1e+02 Score=21.89 Aligned_cols=40 Identities=25% Similarity=0.161 Sum_probs=30.5
Q ss_pred CCccccCHHHHHHHHHHHHHhhcccCCCCCCChhhhccCCHHHHHHHHHHcccccc
Q 034242 29 VEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELE 84 (100)
Q Consensus 29 ~~EqfLT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CELE 84 (100)
.||.--|+-||++.|...+.+. ++-+++.++|+-=-|++.
T Consensus 42 ~pe~~~~~~eLk~~l~~~~~~~----------------~p~de~~k~l~~lL~~y~ 81 (102)
T PF12939_consen 42 IPEGDETPFELKEKLQKDIDKI----------------SPEDEREKKLISLLKDYI 81 (102)
T ss_pred CcccccCHHHHHHHHHHhccCC----------------CCchHHHHHHHHHHHhcC
Confidence 4666778889888888777665 566788888887777776
No 54
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=22.21 E-value=1.5e+02 Score=21.15 Aligned_cols=36 Identities=6% Similarity=0.044 Sum_probs=26.5
Q ss_pred hhhccCCcEEEecCCCCccccC------HHHHHHHHHHHHHhh
Q 034242 14 MAYSRTETYVLLEPGVEEKFVT------EEELKARLKYWLENW 50 (100)
Q Consensus 14 ~my~q~D~YVvLEp~~~EqfLT------~~Ell~~Lk~~L~~~ 50 (100)
+++ +..+.|++-+|.+..... ..+++.-...||.++
T Consensus 35 ~l~-~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~ 76 (126)
T TIGR01689 35 HYK-ALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQH 76 (126)
T ss_pred HHH-HCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHc
Confidence 445 678889999999887655 446666677777777
No 55
>cd08532 SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor. SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.
Probab=22.07 E-value=1.2e+02 Score=20.17 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=24.8
Q ss_pred cccCHHHHHHHHHHHHHhhcccCCCCCCChhhhccC
Q 034242 32 KFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFA 67 (100)
Q Consensus 32 qfLT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~ 67 (100)
+.=|++....||.-...+. +||+++.+|+
T Consensus 11 ~~Ws~~~V~~WL~w~~~ef-------~L~~~~~~F~ 39 (76)
T cd08532 11 YQWSPANVQKWLLWTEHQY-------RLPPPPRCFE 39 (76)
T ss_pred hhcCHHHHHHHHHHHHHHh-------CCCCchhcCC
Confidence 5569999999999999988 7888888883
No 56
>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B ....
Probab=21.92 E-value=77 Score=19.20 Aligned_cols=16 Identities=31% Similarity=0.495 Sum_probs=12.7
Q ss_pred CHHHHHHHHHHHHHhh
Q 034242 35 TEEELKARLKYWLENW 50 (100)
Q Consensus 35 T~~Ell~~Lk~~L~~~ 50 (100)
+.+++.+++++.|..+
T Consensus 36 ~~~~i~~~~~~~l~~~ 51 (73)
T PF13193_consen 36 DEEEIRDHLRDKLPPY 51 (73)
T ss_dssp HHHHHHHHHHHHS-GG
T ss_pred eecccccchhhhCCCc
Confidence 5589999999988877
No 57
>cd02420 Peptidase_C39D A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=21.59 E-value=1.1e+02 Score=19.73 Aligned_cols=24 Identities=21% Similarity=0.319 Sum_probs=17.2
Q ss_pred CCcEEEecCCCCccccCHHHHHHH
Q 034242 19 TETYVLLEPGVEEKFVTEEELKAR 42 (100)
Q Consensus 19 ~D~YVvLEp~~~EqfLT~~Ell~~ 42 (100)
.+++++..|+...+.+|.+|+.+.
T Consensus 94 ~~~~~i~dp~~~~~~~s~~el~~~ 117 (125)
T cd02420 94 KRKVFLNDPATGRRTVSLEEFDQS 117 (125)
T ss_pred CCEEEEECCCcCceeecHHHHHhh
Confidence 456677788776778888887654
No 58
>PF11338 DUF3140: Protein of unknown function (DUF3140); InterPro: IPR021487 Some members in this family of proteins are annotated as DNA binding proteins. No function is currently known.
Probab=21.42 E-value=56 Score=22.94 Aligned_cols=17 Identities=24% Similarity=0.104 Sum_probs=12.4
Q ss_pred ccCHHHHHHHHHHHHHh
Q 034242 33 FVTEEELKARLKYWLEN 49 (100)
Q Consensus 33 fLT~~Ell~~Lk~~L~~ 49 (100)
-+|+.||.+||+.=-++
T Consensus 7 NMt~~EL~~WL~t~~S~ 23 (92)
T PF11338_consen 7 NMTPAELEDWLRTDESK 23 (92)
T ss_pred CCCHHHHHHHHcCcccc
Confidence 47999999888754443
No 59
>PRK05828 acyl carrier protein; Validated
Probab=21.27 E-value=1.4e+02 Score=19.79 Aligned_cols=17 Identities=18% Similarity=0.155 Sum_probs=14.9
Q ss_pred cCHHHHHHHHHHHHHhh
Q 034242 34 VTEEELKARLKYWLENW 50 (100)
Q Consensus 34 LT~~Ell~~Lk~~L~~~ 50 (100)
+|.+|++++++.+++..
T Consensus 1 m~~~eI~~~i~~ii~e~ 17 (84)
T PRK05828 1 MQEMEILLKIKEIAKKK 17 (84)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 58899999999999873
No 60
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=21.21 E-value=1.6e+02 Score=19.45 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=22.5
Q ss_pred cccCHHHHHHHHHHHHHhhcccCCCCCCChh
Q 034242 32 KFVTEEELKARLKYWLENWAGQVGKGGLPPD 62 (100)
Q Consensus 32 qfLT~~Ell~~Lk~~L~~~~~~~~~~~LP~d 62 (100)
+-+|-+|.+..|..+++++.. +++|-+
T Consensus 3 ~~~sfEeal~~LE~Iv~~LE~----~~l~Le 29 (76)
T PRK14063 3 NKLSFEEAISQLEHLVSKLEQ----GDVPLE 29 (76)
T ss_pred cccCHHHHHHHHHHHHHHHHC----CCCCHH
Confidence 347899999999999999986 377765
No 61
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=20.84 E-value=1.1e+02 Score=17.14 Aligned_cols=13 Identities=46% Similarity=0.493 Sum_probs=8.8
Q ss_pred CHHHHHHHHHHHH
Q 034242 35 TEEELKARLKYWL 47 (100)
Q Consensus 35 T~~Ell~~Lk~~L 47 (100)
+.+||+++|++++
T Consensus 23 ~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 23 KKAELIERLKEHL 35 (35)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhC
Confidence 4677777777664
No 62
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=20.59 E-value=2e+02 Score=20.11 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=24.9
Q ss_pred cEEEecCCCCccc------cCHHHHHHHHHHHHHhhcccCCCCCCC
Q 034242 21 TYVLLEPGVEEKF------VTEEELKARLKYWLENWAGQVGKGGLP 60 (100)
Q Consensus 21 ~YVvLEp~~~Eqf------LT~~Ell~~Lk~~L~~~~~~~~~~~LP 60 (100)
.++++.+... ++ +|.+.+.+++++.+...-....+++||
T Consensus 84 ~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~Gkl~~~~~~~~p 128 (130)
T cd02983 84 AMVAINFRKM-KFATLKGSFSEDGINEFLRELSYGRGPTLPVNGLP 128 (130)
T ss_pred EEEEEecccC-ccccccCccCHHHHHHHHHHHHcCCcccccCCCCC
Confidence 3555555442 44 388999999999998765433334444
No 63
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=20.47 E-value=95 Score=20.92 Aligned_cols=24 Identities=29% Similarity=0.191 Sum_probs=19.2
Q ss_pred CCCccccCHHHHHHHHHHHHHhhc
Q 034242 28 GVEEKFVTEEELKARLKYWLENWA 51 (100)
Q Consensus 28 ~~~EqfLT~~Ell~~Lk~~L~~~~ 51 (100)
|+.=.--|++||+++++..|.+.|
T Consensus 53 G~~V~A~t~eeL~~kI~~~i~e~~ 76 (78)
T PF07293_consen 53 GEIVAAETAEELLEKIKEKIEENP 76 (78)
T ss_pred CEEEecCCHHHHHHHHHHHHhccc
Confidence 555556699999999999988764
No 64
>PF06348 DUF1059: Protein of unknown function (DUF1059); InterPro: IPR009409 This entry consists of short hypothetical archaeal and bacterial proteins of unknown function.
Probab=20.14 E-value=1.9e+02 Score=17.94 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHhhcccCCCCCCChhhh
Q 034242 35 TEEELKARLKYWLENWAGQVGKGGLPPDLA 64 (100)
Q Consensus 35 T~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~ 64 (100)
|.+||+..++.-+..--+ ...+|+++.
T Consensus 21 tedEll~~~~~Ha~~~Hg---~~~~~~el~ 47 (57)
T PF06348_consen 21 TEDELLEAVVEHAREVHG---MTEIPEELR 47 (57)
T ss_pred CHHHHHHHHHHHHHHhcC---CccCCHHHH
Confidence 578999999998888754 467888764
No 65
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.13 E-value=98 Score=26.02 Aligned_cols=50 Identities=26% Similarity=0.321 Sum_probs=36.5
Q ss_pred ccccCHHHHHHHHHHHHHhhcccCCCCCCChhhhccCCHHHHH-----HHHHHccccccccCC
Q 034242 31 EKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAV-----AFLITNVCELELQGD 88 (100)
Q Consensus 31 EqfLT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qa-----q~Lldt~CELEi~pg 88 (100)
+.-++.+||.++|-++...+ .|-++.|+-+--+.+ -.+++-+||||..+-
T Consensus 153 ~~~~~geelfe~lDe~F~rL--------ip~E~gki~~~vk~VGgg~ka~i~e~~~ele~~d~ 207 (315)
T COG4030 153 IASLSGEELFEKLDELFSRL--------IPSEVGKIVESVKAVGGGEKAKIMEGYCELEGIDF 207 (315)
T ss_pred cccccHHHHHHHHHHHHhhc--------CHHHHHHHHHhhhhccCcchhHHHHHHHhhcCCCc
Confidence 45678899999999999887 566666664443332 468999999996543
Done!