Query 034242
Match_columns 100
No_of_seqs 56 out of 58
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 19:26:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034242.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034242hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2krx_A ASL3597 protein; struct 100.0 1.1E-45 3.7E-50 256.5 8.5 81 14-100 5-85 (94)
2 2k0m_A Uncharacterized protein 65.6 8.6 0.00029 26.1 4.2 61 29-99 10-70 (104)
3 3ddc_B RAS association domain- 54.2 6.8 0.00023 28.9 2.2 24 28-51 1-24 (163)
4 3cpf_A Eukaryotic translation 53.3 11 0.00039 26.1 3.1 35 15-49 79-116 (138)
5 2hm2_Q ASC2, pyrin-only protei 50.4 31 0.0011 21.9 4.7 49 33-82 14-62 (89)
6 2l6a_A Nacht, LRR and PYD doma 48.9 37 0.0013 22.5 5.0 48 33-82 21-68 (102)
7 1wy1_A Hypothetical protein PH 48.2 22 0.00076 25.7 4.1 40 34-81 79-122 (172)
8 1ucp_A Pycard, ASC, apoptosis- 47.3 34 0.0012 21.8 4.5 49 33-82 14-62 (91)
9 3skq_A Mitochondrial distribut 39.8 26 0.00088 27.3 3.5 29 32-64 164-192 (249)
10 2p8e_A PPM1B beta isoform vari 34.8 28 0.00096 25.6 2.9 48 19-82 236-283 (307)
11 2dlx_A UBX domain-containing p 31.8 1.1E+02 0.0037 20.8 5.4 35 19-53 102-141 (153)
12 1vp7_A Exodeoxyribonuclease VI 31.6 57 0.002 22.1 3.8 33 26-62 22-54 (100)
13 1w1n_A Phosphatidylinositol 3- 30.7 11 0.00037 20.8 0.0 17 68-84 4-20 (33)
14 2zhy_A ATP:COB(I)alamin adenos 30.5 50 0.0017 24.0 3.6 42 33-81 83-128 (183)
15 2g2d_A ATP:cobalamin adenosylt 29.9 63 0.0021 23.7 4.1 41 34-81 92-136 (193)
16 2i0o_A Ser/Thr phosphatase; be 29.6 39 0.0013 24.7 3.0 51 18-83 234-284 (304)
17 3hks_A EIF-5A-2, eukaryotic tr 28.5 37 0.0013 24.6 2.6 35 15-49 101-140 (167)
18 2opw_A Phyhd1 protein; double- 28.3 37 0.0013 24.3 2.6 24 13-42 9-32 (291)
19 3ke4_A Hypothetical cytosolic 26.2 48 0.0016 25.0 2.9 41 34-81 104-148 (213)
20 2kn6_A Apoptosis-associated sp 25.7 1.5E+02 0.005 21.9 5.5 49 33-82 34-82 (215)
21 1pn5_A Nacht-, LRR- and PYD-co 25.3 1.3E+02 0.0043 21.9 5.0 48 34-82 74-121 (159)
22 2dml_A Protein disulfide-isome 25.2 1.1E+02 0.0039 18.3 4.1 34 18-51 89-127 (130)
23 3g2f_A Bone morphogenetic prot 24.8 47 0.0016 23.3 2.6 24 30-53 300-323 (336)
24 1wvt_A Hypothetical protein ST 24.7 69 0.0024 23.1 3.5 41 34-81 75-119 (172)
25 2rdq_A 1-deoxypentalenic acid 24.5 48 0.0016 23.6 2.6 24 13-42 25-48 (288)
26 2a1x_A Phytanoyl-COA dioxygena 23.8 49 0.0017 24.0 2.6 26 13-44 28-53 (308)
27 2qjz_A Microtubule-associated 23.7 46 0.0016 22.9 2.3 18 32-49 3-20 (123)
28 1a6q_A Phosphatase 2C; catalyt 23.6 52 0.0018 25.5 2.8 48 20-83 231-278 (382)
29 2fct_A Syringomycin biosynthes 23.6 57 0.0019 23.7 2.8 31 13-49 15-45 (313)
30 2hp0_A IDS-epimerase; MMGE/PRP 22.5 45 0.0016 27.1 2.3 45 27-89 417-461 (466)
31 3ci3_A Cobalamin adenosyltrans 22.0 66 0.0023 23.6 3.0 41 34-81 93-137 (194)
32 2idx_A COB(I)yrinic acid A,C-d 21.7 65 0.0022 23.7 2.9 39 37-81 93-135 (196)
33 2j4o_A Mitogen-activated prote 21.7 49 0.0017 25.7 2.3 50 18-83 280-337 (401)
34 1rty_A YVQK protein; all alpha 20.6 73 0.0025 23.4 2.9 41 34-81 85-129 (193)
35 2ah6_A BH1595, unknown conserv 20.4 73 0.0025 23.8 2.9 41 34-81 98-142 (208)
36 2nt8_A Cobalamin adenosyltrans 20.3 74 0.0025 24.0 3.0 41 34-81 122-166 (223)
37 2i44_A Serine-threonine phosph 20.2 90 0.0031 22.8 3.4 47 20-82 258-306 (324)
38 3dml_A Putative uncharacterize 20.1 94 0.0032 20.6 3.2 34 18-51 76-113 (116)
No 1
>2krx_A ASL3597 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; NMR {Nostoc SP}
Probab=100.00 E-value=1.1e-45 Score=256.48 Aligned_cols=81 Identities=36% Similarity=0.613 Sum_probs=78.2
Q ss_pred hhhccCCcEEEecCCCCccccCHHHHHHHHHHHHHhhcccCCCCCCChhhhccCCHHHHHHHHHHccccccccCCceeEE
Q 034242 14 MAYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELELQGDVGSIQ 93 (100)
Q Consensus 14 ~my~q~D~YVvLEp~~~EqfLT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CELEi~pg~~~lQ 93 (100)
-|| |+|||||||||+||||||++||++|||+||+++|+ ++||+||+||+|+++||+||+||+|||||+||+ |||
T Consensus 5 lmy-q~D~yVvLEp~~~EqfLT~~Ell~~Lk~~L~~~~~----~~LP~dL~~~~s~~~qaq~Lldt~CELei~pG~-~lQ 78 (94)
T 2krx_A 5 LMY-QQDNFVVLETNQPEQFLTTIELLEKLKGELEKISF----SDLPLELQKLDSLPAQAQHLIDTSCELDVGAGK-YLQ 78 (94)
T ss_dssp CSC-CCCCEEEEESSSCSEEECHHHHHHHHHHHHHHSCT----TTSCHHHHHCCCHHHHHHHHHHHCCCEEEETTE-EEE
T ss_pred hhc-ccCCEEEecCCCCcccCCHHHHHHHHHHHHHhCcc----ccCCHHHHhCCCHHHHHHHHHHheeeeeeCCCC-EEE
Confidence 389 99999999999999999999999999999999995 499999999999999999999999999999995 999
Q ss_pred EEEEeeC
Q 034242 94 WYEVRLE 100 (100)
Q Consensus 94 WYaVRLE 100 (100)
|||||||
T Consensus 79 WYaVRLE 85 (94)
T 2krx_A 79 WYAVRLE 85 (94)
T ss_dssp EEECCCC
T ss_pred EEEEEEe
Confidence 9999998
No 2
>2k0m_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodospirillum rubrum atcc 11170}
Probab=65.59 E-value=8.6 Score=26.12 Aligned_cols=61 Identities=16% Similarity=0.131 Sum_probs=38.3
Q ss_pred CCccccCHHHHHHHHHHHHHhhcccCCCCCCChhhhccCCHHHHHHHHHHccccccccCCceeEEEEEEee
Q 034242 29 VEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELELQGDVGSIQWYEVRL 99 (100)
Q Consensus 29 ~~EqfLT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CELEi~pg~~~lQWYaVRL 99 (100)
-+..|=|..++.+.++++|.+++.+ +.|.++ ...-+.+..+| -.-++-.||.| |..+-||.
T Consensus 10 G~~~F~s~~~~~~~~k~iL~~y~~g---~~l~~~--d~~~l~~lL~~--HP~~~~KiG~G---i~~i~V~~ 70 (104)
T 2k0m_A 10 AGHEFARKADALAFMKVMLNRYRPG---DIVSTV--DGAFLVEALKR--HPDATSKIGPG---VRNFEVRS 70 (104)
T ss_dssp TTEEESSHHHHHHHHHHHHHHSCTT---EECCHH--HHHHHHHHHHT--STTHHHHHTTC---EEEEEEEE
T ss_pred CCEecCCHHHHHHHHHHHHHhCCCC---CccCHH--HHHHHHHHHHh--CCcHHHhcCCC---cceEEEec
Confidence 4578999999999999999999853 344443 11112222222 23345558888 56666663
No 3
>3ddc_B RAS association domain-containing family protein; oncogene, tumorsuppressor, ubiquitin fold, RAS effector, RAP rassf1, rassf5, RAPL, NORE1, GMPPNP; HET: GNP; 1.80A {Mus musculus}
Probab=54.19 E-value=6.8 Score=28.95 Aligned_cols=24 Identities=21% Similarity=0.165 Sum_probs=16.8
Q ss_pred CCCccccCHHHHHHHHHHHHHhhc
Q 034242 28 GVEEKFVTEEELKARLKYWLENWA 51 (100)
Q Consensus 28 ~~~EqfLT~~Ell~~Lk~~L~~~~ 51 (100)
|.||+-||.+|+.+|++++=++..
T Consensus 1 ~~~~~~ls~~ei~~kI~~YN~~~~ 24 (163)
T 3ddc_B 1 GSPEFPPTIQEIKQKIDSYNSREK 24 (163)
T ss_dssp -----CCCHHHHHHHHHHHHHTSC
T ss_pred CCccccCCHHHHHHHHHHHHHhcc
Confidence 679999999999999999877664
No 4
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}
Probab=53.27 E-value=11 Score=26.09 Aligned_cols=35 Identities=14% Similarity=0.032 Sum_probs=27.0
Q ss_pred hhccCCcEEEecCCCCcccc---CHHHHHHHHHHHHHh
Q 034242 15 AYSRTETYVLLEPGVEEKFV---TEEELKARLKYWLEN 49 (100)
Q Consensus 15 my~q~D~YVvLEp~~~EqfL---T~~Ell~~Lk~~L~~ 49 (100)
+|.+.|.|++|.+.--||+= +++.+-+.++.||..
T Consensus 79 ly~dg~~~~fMD~etyeq~~l~l~~~~lgd~~~~~l~e 116 (138)
T 3cpf_A 79 IGIQDGYLSLLQDSGEVREDLRLPEGDLGKEIEQKYDC 116 (138)
T ss_dssp EEEETTEEEEECTTSCEECCSBCCSHHHHHHHHHHHHH
T ss_pred EEecCCEEEEEcCCCCeEeeecCCHHHHHHHHHHHhhC
Confidence 48899999999999888864 666666777666653
No 5
>2hm2_Q ASC2, pyrin-only protein 1, PAAD-only; pyrin domain, six helix bundle, apoptosis; NMR {Homo sapiens}
Probab=50.44 E-value=31 Score=21.87 Aligned_cols=49 Identities=24% Similarity=0.201 Sum_probs=38.8
Q ss_pred ccCHHHHHHHHHHHHHhhcccCCCCCCChhhhccCCHHHHHHHHHHcccc
Q 034242 33 FVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCE 82 (100)
Q Consensus 33 fLT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CE 82 (100)
-|+++|+. ++|..|.+.+-..|+..+|..--.-.+..+-|..|+..+.+
T Consensus 14 ~L~~~Elk-~FK~~L~~~~~~~~~~~Ip~~~le~a~~~dla~lLv~~y~~ 62 (89)
T 2hm2_Q 14 NLTPEELK-KFKMKLGTVPLREGFERIPRGALGQLDIVDLTDKLVASYYE 62 (89)
T ss_dssp TSCHHHHH-HHHHHTTTSCCCTTCCCCCGGGTTTSCHHHHHHHHHHHHHH
T ss_pred HcCHHHHH-HHHHHHccccccccCCCCChhhcccCCHHHHHHHHHHHcCH
Confidence 47788875 78889988876567778898877778999999999887754
No 6
>2l6a_A Nacht, LRR and PYD domains-containing protein 12; NLRP12, pyrin, death domain, signaling protein; NMR {Homo sapiens}
Probab=48.87 E-value=37 Score=22.48 Aligned_cols=48 Identities=29% Similarity=0.348 Sum_probs=37.1
Q ss_pred ccCHHHHHHHHHHHHHhhcccCCCCCCChhhhccCCHHHHHHHHHHcccc
Q 034242 33 FVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCE 82 (100)
Q Consensus 33 fLT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CE 82 (100)
-|+++|+. ++|..|.+ +-..|...+|..--+-.+..+-|..|+..+.+
T Consensus 21 ~L~~~Elk-kFK~~L~~-~l~~g~~~Ip~~~le~ad~~dLa~lLv~~y~e 68 (102)
T 2l6a_A 21 ELEAVELK-KFKLYLGT-ATELGEGKIPWGSMEKAGPLEMAQLLITHFGP 68 (102)
T ss_dssp TSCHHHHH-HHHHHHHS-CSTTTTCSSCSSTTTTCCHHHHHHHHHHHTCH
T ss_pred HcCHHHHH-HHHHHHcc-cccccCCCCChHHHhcCCHHHHHHHHHHHcCH
Confidence 47888876 77888887 54456678888777778889999999887754
No 7
>1wy1_A Hypothetical protein PH0671; structural genomics, riken structural genomics/proteomics in RSGI, transferase; 1.80A {Pyrococcus horikoshii}
Probab=48.25 E-value=22 Score=25.69 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=32.7
Q ss_pred cCHHHHHHHHHHHHHhhcccCCCCCCChhhhcc----CCHHHHHHHHHHccc
Q 034242 34 VTEEELKARLKYWLENWAGQVGKGGLPPDLAKF----ATIDEAVAFLITNVC 81 (100)
Q Consensus 34 LT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~----~s~~~qaq~Lldt~C 81 (100)
++ ++-.++|+.|+..+.. .+| |..| .|..+++-|+..|.|
T Consensus 79 i~-~~~v~~LE~~id~~~~-----~lp--l~~FILPgg~~~aA~Lh~aRtv~ 122 (172)
T 1wy1_A 79 IS-EERIKWLEGLISRYEE-----MVN--LKSFVLPGGTLESAKLDVCRTIA 122 (172)
T ss_dssp CC-HHHHHHHHHHHHHHHT-----TCS--CCSSCCSCSSHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHhh-----hCC--CcCeEECCCCHHHHHHHHHHHHH
Confidence 44 4777999999999975 788 8777 588888889998888
No 8
>1ucp_A Pycard, ASC, apoptosis-associated speck-like protein containing A CARD; death domain fold; NMR {Homo sapiens} SCOP: a.77.1.5
Probab=47.25 E-value=34 Score=21.82 Aligned_cols=49 Identities=24% Similarity=0.181 Sum_probs=38.5
Q ss_pred ccCHHHHHHHHHHHHHhhcccCCCCCCChhhhccCCHHHHHHHHHHcccc
Q 034242 33 FVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCE 82 (100)
Q Consensus 33 fLT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CE 82 (100)
-|+++|+. ++|..|.+.+-..|+..+|..--.-.+..+-|..|+..+.+
T Consensus 14 ~L~~~Elk-~FK~~L~~~~l~~g~~~Ip~~~le~a~~~dla~lLv~~y~~ 62 (91)
T 1ucp_A 14 NLTAEELK-KFKLKLLSVPLREGYGRIPRGALLSMDALDLTDKLVSFYLE 62 (91)
T ss_dssp HSCHHHHH-HHHHHTTTSCCCSSSCCCCHHHHHHCCHHHHHHHHHHTSCH
T ss_pred HcCHHHHH-HHHHHHhhccccccCCCCChhhcccCCHHHHHHHHHHHcCH
Confidence 36777765 78889988876567778898877778899999999887754
No 9
>3skq_A Mitochondrial distribution and morphology protein; 14-3-3-like membrane protein, mitochondrial ribosome, respir chain biogenesis; 2.10A {Saccharomyces cerevisiae}
Probab=39.76 E-value=26 Score=27.30 Aligned_cols=29 Identities=34% Similarity=0.433 Sum_probs=23.0
Q ss_pred cccCHHHHHHHHHHHHHhhcccCCCCCCChhhh
Q 034242 32 KFVTEEELKARLKYWLENWAGQVGKGGLPPDLA 64 (100)
Q Consensus 32 qfLT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~ 64 (100)
.-+|++++..||+.||.=.-. ..+|..|-
T Consensus 164 ~gls~e~LR~~L~~WL~Lsl~----~~vPssLL 192 (249)
T 3skq_A 164 YGVSKEDLVDNLKVWLELRLR----QKIPSVLM 192 (249)
T ss_dssp TTCCHHHHHHHHHHHHHHHHT----SCCCHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcc----CCCCHHHH
Confidence 348999999999999987754 37887763
No 10
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens}
Probab=34.85 E-value=28 Score=25.60 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=35.4
Q ss_pred CCcEEEecCCCCccccCHHHHHHHHHHHHHhhcccCCCCCCChhhhccCCHHHHHHHHHHcccc
Q 034242 19 TETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCE 82 (100)
Q Consensus 19 ~D~YVvLEp~~~EqfLT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CE 82 (100)
.|.|+||-.+-==..||.+|+.+.++..+... .+.++.|+.|++.+.+
T Consensus 236 ~d~~llL~SDGl~d~ls~~ei~~~v~~~~~~~----------------~~~~~~a~~Lv~~A~~ 283 (307)
T 2p8e_A 236 EDEFIILACDGIWDVMSNEELCEYVKSRLEVS----------------DDLENVCNWVVDTCLH 283 (307)
T ss_dssp TEEEEEEECHHHHTTSCHHHHHHHHHHHHTTC----------------CCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccCCCHHHHHHHHHHHHhcC----------------CCHHHHHHHHHHHHHH
Confidence 35577777775556799999988887765432 4678899999998754
No 11
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24
Probab=31.75 E-value=1.1e+02 Score=20.82 Aligned_cols=35 Identities=9% Similarity=0.120 Sum_probs=26.7
Q ss_pred CCcEEEecCCCCc-----cccCHHHHHHHHHHHHHhhccc
Q 034242 19 TETYVLLEPGVEE-----KFVTEEELKARLKYWLENWAGQ 53 (100)
Q Consensus 19 ~D~YVvLEp~~~E-----qfLT~~Ell~~Lk~~L~~~~~~ 53 (100)
--+++++.|+..+ .++++++++++|+..+.+....
T Consensus 102 ~P~~~fld~~~G~~l~~~~g~~~~~fl~~L~~~l~~~~~~ 141 (153)
T 2dlx_A 102 FPYVSILDPRTGQKLVEWHQLDVSSFLDQVTGFLGEHGQL 141 (153)
T ss_dssp SSEEEEECTTTCCCCEEESSCCHHHHHHHHHHHHHHTCSC
T ss_pred CCEEEEEeCCCCcEeeecCCCCHHHHHHHHHHHHHhcCCC
Confidence 4578899886221 2489999999999999988643
No 12
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=31.64 E-value=57 Score=22.06 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=25.7
Q ss_pred cCCCCccccCHHHHHHHHHHHHHhhcccCCCCCCChh
Q 034242 26 EPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPD 62 (100)
Q Consensus 26 Ep~~~EqfLT~~Ell~~Lk~~L~~~~~~~~~~~LP~d 62 (100)
.|+.+..-+|-+|.++.|..+++++.. +++|-+
T Consensus 22 ~~~~~~~~~sFEeal~eLEeIV~~LE~----gel~LE 54 (100)
T 1vp7_A 22 QTDARPLPQDFETALAELESLVSAMEN----GTLPLE 54 (100)
T ss_dssp ---CCCBCCSHHHHHHHHHHHHHHHHT----TCSCHH
T ss_pred CcccCCCCCCHHHHHHHHHHHHHHHHc----CCCCHH
Confidence 566677789999999999999999986 377765
No 13
>1w1n_A Phosphatidylinositol 3-kinase TOR1; target of rapamycin, Ser/Thr kinase, redox-regulation, disulfide bond, transferase; NMR {Saccharomyces cerevisiae} PDB: 2kio_A 2kit_A
Probab=30.71 E-value=11 Score=20.84 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHcccccc
Q 034242 68 TIDEAVAFLITNVCELE 84 (100)
Q Consensus 68 s~~~qaq~Lldt~CELE 84 (100)
|+++|++.||..+-+.+
T Consensus 4 sv~~QV~~LI~~At~~~ 20 (33)
T 1w1n_A 4 DVPEQVDKLIQQATSIE 20 (33)
T ss_dssp CSTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCHH
Confidence 78899999998876654
No 14
>2zhy_A ATP:COB(I)alamin adenosyltransferase, putative; helix bundle; 1.80A {Burkholderia thailandensis} PDB: 2zhz_A*
Probab=30.50 E-value=50 Score=24.02 Aligned_cols=42 Identities=38% Similarity=0.722 Sum_probs=31.1
Q ss_pred ccCHHHHHHHHHHHHHhhcccCCCCCCChhhhcc----CCHHHHHHHHHHccc
Q 034242 33 FVTEEELKARLKYWLENWAGQVGKGGLPPDLAKF----ATIDEAVAFLITNVC 81 (100)
Q Consensus 33 fLT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~----~s~~~qaq~Lldt~C 81 (100)
-++ ++-.++|+.|+..+.. .||| |..| .|..+++-|+..|.|
T Consensus 83 ~i~-~~~v~~LE~~id~~~~-----~l~p-l~~FILPgg~~~aA~Lh~aRtv~ 128 (183)
T 2zhy_A 83 AIT-DAHLARLDGWLAHYNG-----QLPP-LEEFILPGGARGAALAHVCRTVC 128 (183)
T ss_dssp CCC-HHHHHHHHHHHHHHHH-----TSCC-CCSCCBSCSSHHHHHHHHHHHHH
T ss_pred CCC-HHHHHHHHHHHHHHHh-----hCCC-CcceeeCCCCHHHHHHHHHHHHH
Confidence 355 4668899999998865 5655 5555 488888888888887
No 15
>2g2d_A ATP:cobalamin adenosyltransferase; helix bundle, trimer, structural genomics, PSI, protein STRU initiative; 2.00A {Mycobacterium tuberculosis}
Probab=29.88 E-value=63 Score=23.69 Aligned_cols=41 Identities=24% Similarity=0.496 Sum_probs=31.3
Q ss_pred cCHHHHHHHHHHHHHhhcccCCCCCCChhhhcc----CCHHHHHHHHHHccc
Q 034242 34 VTEEELKARLKYWLENWAGQVGKGGLPPDLAKF----ATIDEAVAFLITNVC 81 (100)
Q Consensus 34 LT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~----~s~~~qaq~Lldt~C 81 (100)
+++ +-.++|+.|+..+.. .||+ |..| .|..+++-|+..|.|
T Consensus 92 i~~-~~v~~LE~~id~~~~-----~l~p-l~~FILPGG~~~aA~LH~aRtv~ 136 (193)
T 2g2d_A 92 IAQ-SYIDRLEGWCDAYNA-----GLPA-LKSFVLPGGSPLSALLHVARTVV 136 (193)
T ss_dssp CCH-HHHHHHHHHHHHHHT-----TCCC-CSSCEESCSSHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHHHHh-----hCCC-CCceeeCCCCHHHHHHHHHHHHH
Confidence 554 558999999999975 5654 4444 588888889998888
No 16
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae}
Probab=29.57 E-value=39 Score=24.69 Aligned_cols=51 Identities=10% Similarity=0.066 Sum_probs=36.2
Q ss_pred cCCcEEEecCCCCccccCHHHHHHHHHHHHHhhcccCCCCCCChhhhccCCHHHHHHHHHHccccc
Q 034242 18 RTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCEL 83 (100)
Q Consensus 18 q~D~YVvLEp~~~EqfLT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CEL 83 (100)
..|.|+||-.+-==..||.+|+...+...+... -.++++.|+.|++.+..-
T Consensus 234 ~~D~fllL~SDGl~d~l~~~ei~~~v~~~~~~~---------------~~~~~~~a~~L~~~a~~~ 284 (304)
T 2i0o_A 234 PEDEFMVLACDGIWNFMTSEQVVQFVQERINKP---------------GMKLSKICEELFDHCLAP 284 (304)
T ss_dssp TTEEEEEEECHHHHTTCCHHHHHHHHHHHHTST---------------TCCHHHHHHHHHHHHC--
T ss_pred CCCeEEEEECcCccccCCHHHHHHHHHHHHhhc---------------CCCHHHHHHHHHHHHHHh
Confidence 456677777765455789999988887766541 156788999999987654
No 17
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana}
Probab=28.46 E-value=37 Score=24.62 Aligned_cols=35 Identities=14% Similarity=0.098 Sum_probs=26.2
Q ss_pred hhccC-CcEEEecCCCCccc---cCHH-HHHHHHHHHHHh
Q 034242 15 AYSRT-ETYVLLEPGVEEKF---VTEE-ELKARLKYWLEN 49 (100)
Q Consensus 15 my~q~-D~YVvLEp~~~Eqf---LT~~-Ell~~Lk~~L~~ 49 (100)
+|.+. +.|++|.+.--||+ |+++ +|-..++.+|..
T Consensus 101 LY~d~d~~~~fMD~etyeQ~~l~lp~~~~lg~~i~~~l~e 140 (167)
T 3hks_A 101 IDITEDGFVSLLTDSGGTKDDLKLPTDDGLTAQMRLGFDE 140 (167)
T ss_dssp EEECTTSBEEEECTTSCEECCCBCCSCHHHHHHHHHHHHT
T ss_pred EEECCCCEEEEEcCCCceEEEEecCchHHHHHHHHHHhhC
Confidence 47634 68999999999995 6666 777778777753
No 18
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A*
Probab=28.31 E-value=37 Score=24.34 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=18.1
Q ss_pred hhhhccCCcEEEecCCCCccccCHHHHHHH
Q 034242 13 RMAYSRTETYVLLEPGVEEKFVTEEELKAR 42 (100)
Q Consensus 13 ~~my~q~D~YVvLEp~~~EqfLT~~Ell~~ 42 (100)
+..| ++|.||||+ .|+|++|+.+.
T Consensus 9 ~~~f-~~dGyvvl~-----~~l~~e~v~~l 32 (291)
T 2opw_A 9 LQKF-QQDGFLVLE-----GFLSAEECVAM 32 (291)
T ss_dssp HHHH-HHHSEEEET-----TSSCHHHHHHH
T ss_pred HHHH-HhCCEEEec-----CCCCHHHHHHH
Confidence 3567 899999995 68988776543
No 19
>3ke4_A Hypothetical cytosolic protein; helix bundle, transferase; 1.90A {Bacillus cereus} PDB: 3ke5_A*
Probab=26.20 E-value=48 Score=25.00 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=29.4
Q ss_pred cCHHHHHHHHHHHHHhhcccCCCCCCChhhhcc----CCHHHHHHHHHHccc
Q 034242 34 VTEEELKARLKYWLENWAGQVGKGGLPPDLAKF----ATIDEAVAFLITNVC 81 (100)
Q Consensus 34 LT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~----~s~~~qaq~Lldt~C 81 (100)
++++ -.++|+.|+..+.. .||+ |..| .|..+++-++..|.|
T Consensus 104 i~~~-~v~~LE~~ID~~~~-----~lpp-l~~FILPGGs~~aA~LHvARTV~ 148 (213)
T 3ke4_A 104 VTIV-MVESLERKIDLYIE-----EAPP-LERFILPGGSEAAATIHIARTVV 148 (213)
T ss_dssp CCHH-HHHHHHHHHHHHHH-----HSCC-CCSCBCSCSSHHHHHHHHHHHHH
T ss_pred CCHH-HHHHHHHHHHHHHh-----cCCC-CCceEeCCCCHHHHHHHHHHHHH
Confidence 5544 45788888888864 5654 5555 478888888888888
No 20
>2kn6_A Apoptosis-associated speck-like protein containin; multidomain modular protein structure, interdomain mobility, domain, inflammation; NMR {Homo sapiens}
Probab=25.73 E-value=1.5e+02 Score=21.91 Aligned_cols=49 Identities=24% Similarity=0.181 Sum_probs=38.5
Q ss_pred ccCHHHHHHHHHHHHHhhcccCCCCCCChhhhccCCHHHHHHHHHHcccc
Q 034242 33 FVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCE 82 (100)
Q Consensus 33 fLT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CE 82 (100)
-|+++|+. ++|..|.+.+-..|+..+|..--.-.+..+-|..|+..+.+
T Consensus 34 ~L~~~Elk-kFK~~L~~~~l~~g~~~Ip~~~le~ad~~dla~lLv~~y~~ 82 (215)
T 2kn6_A 34 NLTAEELK-KFKLKLLSVPLREGYGRIPRGALLSMDALDLTDKLVSFYLE 82 (215)
T ss_dssp HSCHHHHH-HHHHHHHHSCCSSCCCCCCHHHHHHSCHHHHHHHHHHHSCH
T ss_pred HcCHHHHH-HHHHHHhhccccccCCCCChhhhhcCCHHHHHHHHHHHcCh
Confidence 36777765 78889988876667788998877778888888888887754
No 21
>1pn5_A Nacht-, LRR- and PYD-containing protein 2; alpha-helix bundle, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.5
Probab=25.28 E-value=1.3e+02 Score=21.88 Aligned_cols=48 Identities=25% Similarity=0.324 Sum_probs=37.6
Q ss_pred cCHHHHHHHHHHHHHhhcccCCCCCCChhhhccCCHHHHHHHHHHcccc
Q 034242 34 VTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCE 82 (100)
Q Consensus 34 LT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CE 82 (100)
|+++|+. ++|..|.+.+-..|+..+|..--+-.+..+-|..|+..+.+
T Consensus 74 L~keELK-kFK~~L~~~~l~~g~~~IP~~eLEkAd~~dLAdLLV~~Yge 121 (159)
T 1pn5_A 74 LKKEELK-EFQLLLANKAHSRSSSGETPAQPEKTSGMEVASYLVAQYGE 121 (159)
T ss_dssp CCHHHHH-HHHHHHHHHCTTCCSSCSCSSCCCCCSHHHHHHHHHHHTCH
T ss_pred cCHHHHH-HHHHHhcccccccCCCCCChhhhhcCCHHHHHHHHHHHcCH
Confidence 6777764 67888988876567778898877778889999999887654
No 22
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=25.19 E-value=1.1e+02 Score=18.28 Aligned_cols=34 Identities=12% Similarity=-0.076 Sum_probs=25.4
Q ss_pred cCCcEEEecCCCC-----ccccCHHHHHHHHHHHHHhhc
Q 034242 18 RTETYVLLEPGVE-----EKFVTEEELKARLKYWLENWA 51 (100)
Q Consensus 18 q~D~YVvLEp~~~-----EqfLT~~Ell~~Lk~~L~~~~ 51 (100)
.--+++++.+|.. .-..+.+++.++|...|.+.+
T Consensus 89 ~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~l~~~~ 127 (130)
T 2dml_A 89 GFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSALRSGP 127 (130)
T ss_dssp SSSEEEEESSCTTSCEECCSCCSHHHHHHHHHHHHHHSS
T ss_pred ccCEEEEEeCCCCeEEEeecCCCHHHHHHHHHHHHhcCC
Confidence 4567888887764 225689999999999887664
No 23
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=24.80 E-value=47 Score=23.30 Aligned_cols=24 Identities=17% Similarity=0.309 Sum_probs=18.5
Q ss_pred CccccCHHHHHHHHHHHHHhhccc
Q 034242 30 EEKFVTEEELKARLKYWLENWAGQ 53 (100)
Q Consensus 30 ~EqfLT~~Ell~~Lk~~L~~~~~~ 53 (100)
|++=.|.+|+++.|+.++..|..+
T Consensus 300 P~~Rps~~e~l~~L~~ll~~~~~~ 323 (336)
T 3g2f_A 300 AEARLTAQXAEERMAELMMIWERN 323 (336)
T ss_dssp GGGSCCHHHHHHHHHHHHHCCCC-
T ss_pred hhhCcchHHHHHHHHHHHHHHHhc
Confidence 455568899999999998888754
No 24
>1wvt_A Hypothetical protein ST2180; structural genomics, unknown function; 2.30A {Sulfolobus tokodaii}
Probab=24.75 E-value=69 Score=23.08 Aligned_cols=41 Identities=24% Similarity=0.464 Sum_probs=30.5
Q ss_pred cCHHHHHHHHHHHHHhhcccCCCCCCChhhhcc----CCHHHHHHHHHHccc
Q 034242 34 VTEEELKARLKYWLENWAGQVGKGGLPPDLAKF----ATIDEAVAFLITNVC 81 (100)
Q Consensus 34 LT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~----~s~~~qaq~Lldt~C 81 (100)
+++ +-.++|+.++..+.. .||+ |..| .|..+++-|+..|.|
T Consensus 75 i~~-~~v~~LE~~id~~~~-----~l~p-l~~FILPgg~~~aA~Lh~aRtv~ 119 (172)
T 1wvt_A 75 FSD-EKVKGIEELITNYSK-----ELEP-LRNFVLPGGHIASSFLHLARAVC 119 (172)
T ss_dssp CCT-HHHHHHHHHHHHHHT-----TSCC-CCSCEESCSSHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHHHHh-----hCCC-CcceeeCCCCHHHHHHHHHHHHH
Confidence 454 558999999999875 5654 4444 588888888888887
No 25
>2rdq_A 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II ketoglutarate dependent hydroxylase...; double stranded barrel helix, dioxygenase; HET: AKG; 1.31A {Streptomyces avermitilis} PDB: 2rdn_A* 2rdr_A* 2rds_A*
Probab=24.53 E-value=48 Score=23.61 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=18.0
Q ss_pred hhhhccCCcEEEecCCCCccccCHHHHHHH
Q 034242 13 RMAYSRTETYVLLEPGVEEKFVTEEELKAR 42 (100)
Q Consensus 13 ~~my~q~D~YVvLEp~~~EqfLT~~Ell~~ 42 (100)
+..| ++|.|||++ .++|++++.+.
T Consensus 25 ~~~f-~~dGyvvl~-----~~l~~e~v~~l 48 (288)
T 2rdq_A 25 DSFY-EEHGYLFLR-----NVLDRDLVKTV 48 (288)
T ss_dssp HHHH-HHHSEEEEC-----SCSCHHHHHHH
T ss_pred HHHH-HhCCEEEEe-----CCCCHHHHHHH
Confidence 4667 899999995 58888775443
No 26
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9
Probab=23.80 E-value=49 Score=24.01 Aligned_cols=26 Identities=12% Similarity=0.416 Sum_probs=19.1
Q ss_pred hhhhccCCcEEEecCCCCccccCHHHHHHHHH
Q 034242 13 RMAYSRTETYVLLEPGVEEKFVTEEELKARLK 44 (100)
Q Consensus 13 ~~my~q~D~YVvLEp~~~EqfLT~~Ell~~Lk 44 (100)
+..| ++|.|||++ .|+|++++.+..+
T Consensus 28 ~~~f-~~dGyvvl~-----~~l~~e~v~~l~~ 53 (308)
T 2a1x_A 28 RKFY-EENGFLVIK-----NLVPDADIQRFRN 53 (308)
T ss_dssp HHHH-HHHSEEEET-----TCSCHHHHHHHHH
T ss_pred HHHH-HhCCEEEcc-----CCCCHHHHHHHHH
Confidence 3567 889999995 6899887655433
No 27
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A
Probab=23.70 E-value=46 Score=22.90 Aligned_cols=18 Identities=11% Similarity=0.113 Sum_probs=15.8
Q ss_pred cccCHHHHHHHHHHHHHh
Q 034242 32 KFVTEEELKARLKYWLEN 49 (100)
Q Consensus 32 qfLT~~Ell~~Lk~~L~~ 49 (100)
.++|..|+++|+.+.|..
T Consensus 3 ~~~sr~ElL~WIN~~L~~ 20 (123)
T 2qjz_A 3 DNLSRHDMLAWINESLQL 20 (123)
T ss_dssp CCCCHHHHHHHHHHHHTC
T ss_pred ccccHHHHHHHHHHHHCC
Confidence 578999999999999854
No 28
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A
Probab=23.60 E-value=52 Score=25.51 Aligned_cols=48 Identities=13% Similarity=0.111 Sum_probs=34.9
Q ss_pred CcEEEecCCCCccccCHHHHHHHHHHHHHhhcccCCCCCCChhhhccCCHHHHHHHHHHccccc
Q 034242 20 ETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCEL 83 (100)
Q Consensus 20 D~YVvLEp~~~EqfLT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CEL 83 (100)
|.|+||-.+-==..||.+|+.+.+...+... .+.++.|+.|++.+..-
T Consensus 231 dd~llLaSDGlwd~ls~~ei~~~v~~~~~~~----------------~~~~~~a~~Lv~~A~~~ 278 (382)
T 1a6q_A 231 DQFIILACDGIWDVMGNEELCDFVRSRLEVT----------------DDLEKVCNEVVDTCLYK 278 (382)
T ss_dssp EEEEEEECHHHHTTSCHHHHHHHHHHHHTTC----------------CCHHHHHHHHHHHHHHT
T ss_pred CeEEEEeccCccCCCChHHHHHHHHHHHhcC----------------CCHHHHHHHHHHHHHhc
Confidence 4577776664445789999988887766432 46788999999987643
No 29
>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A*
Probab=23.57 E-value=57 Score=23.67 Aligned_cols=31 Identities=16% Similarity=0.128 Sum_probs=22.3
Q ss_pred hhhhccCCcEEEecCCCCccccCHHHHHHHHHHHHHh
Q 034242 13 RMAYSRTETYVLLEPGVEEKFVTEEELKARLKYWLEN 49 (100)
Q Consensus 13 ~~my~q~D~YVvLEp~~~EqfLT~~Ell~~Lk~~L~~ 49 (100)
+..| ++|.|||++ .+++++++.+..+.+...
T Consensus 15 ~~~f-~~dGyvvl~-----~~l~~e~v~~l~~~~~~~ 45 (313)
T 2fct_A 15 RASF-EKNGFIGPF-----DAYSPEEMKETWKRTRLR 45 (313)
T ss_dssp HHHH-HHHSEEEEE-----ESSCHHHHHHHHHHHHHH
T ss_pred HHHH-HhCCEEECC-----CCCCHHHHHHHHHHHHHH
Confidence 3567 899999994 699988876655554433
No 30
>2hp0_A IDS-epimerase; MMGE/PRPD fold, 6 helix bundle, chorismate mutase like, ISOM; HET: MSE CSO; 1.50A {Agrobacterium tumefaciens} PDB: 2hp3_A*
Probab=22.48 E-value=45 Score=27.09 Aligned_cols=45 Identities=20% Similarity=0.408 Sum_probs=32.4
Q ss_pred CCCCccccCHHHHHHHHHHHHHhhcccCCCCCCChhhhccCCHHHHHHHHHHccccccccCCc
Q 034242 27 PGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELELQGDV 89 (100)
Q Consensus 27 p~~~EqfLT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CELEi~pg~ 89 (100)
.|.|+.-+|.+|+.+|++..+ .. +|. ++++.|++..-.||-.+++
T Consensus 417 ~G~p~~Pls~~~l~~KF~~~~-~~--------l~~---------~~~~~i~~~v~~le~~~dv 461 (466)
T 2hp0_A 417 PGSLEDPMDDAHLERKFKDCT-AW--------MPF---------GESGLLFDRLRSLTADQGI 461 (466)
T ss_dssp TTSTTSCCCHHHHHHHHHHHT-TT--------SCT---------THHHHHHHHHHTTTTTCBG
T ss_pred CCCCCCCCCHHHHHHHHHHhc-cc--------CCH---------HHHHHHHHHHhCcccCcch
Confidence 477899999999999999876 22 322 3667777777777755443
No 31
>3ci3_A Cobalamin adenosyltransferase PDUO-like protein; adenosyltransferase variant, adenosylcobalamin binding, ATP binding; HET: 3PO 5AD B12; 1.11A {Lactobacillus reuteri} PDB: 3ci1_A* 3ci4_A* 2r6t_A* 2r6x_A* 3gah_A* 3gai_A* 3gaj_A*
Probab=22.03 E-value=66 Score=23.62 Aligned_cols=41 Identities=17% Similarity=0.252 Sum_probs=29.3
Q ss_pred cCHHHHHHHHHHHHHhhcccCCCCCCChhhhcc----CCHHHHHHHHHHccc
Q 034242 34 VTEEELKARLKYWLENWAGQVGKGGLPPDLAKF----ATIDEAVAFLITNVC 81 (100)
Q Consensus 34 LT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~----~s~~~qaq~Lldt~C 81 (100)
++ ++-.++|+.|+..+.. .||+ |..| .|..+++-|+..|.|
T Consensus 93 i~-~~~v~~LE~~id~~~~-----~l~p-l~~FILPGG~~~aA~LH~aRtv~ 137 (194)
T 3ci3_A 93 KQ-EQPTVWLEEKIDNYTQ-----VVPA-VKKFILPGGTQLASALHVARTIT 137 (194)
T ss_dssp CC-HHHHHHHHHHHHHHHH-----HSCC-CSSCBCSCSSHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHHh-----hCCC-CCceeeCCCCHHHHHHHHHHHHH
Confidence 45 4667889999888875 4543 3444 588888888888887
No 32
>2idx_A COB(I)yrinic acid A,C-diamide adenosyltransferase; ATP, cobalamin; HET: ATP; 2.50A {Homo sapiens}
Probab=21.75 E-value=65 Score=23.67 Aligned_cols=39 Identities=21% Similarity=0.455 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCChhhhcc----CCHHHHHHHHHHccc
Q 034242 37 EELKARLKYWLENWAGQVGKGGLPPDLAKF----ATIDEAVAFLITNVC 81 (100)
Q Consensus 37 ~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~----~s~~~qaq~Lldt~C 81 (100)
++-.++|+.++..+.. .|| .|..| .|..+++-|+..|.|
T Consensus 93 ~~~v~~LE~~Id~~~~-----~lp-pl~~FILPGG~~~aA~LH~aRtv~ 135 (196)
T 2idx_A 93 AGPILELEQWIDKYTS-----QLP-PLTAFILPSGGKISSALHFCRAVC 135 (196)
T ss_dssp SHHHHHHHHHHHHHHH-----TSC-CCCSCBCSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-----hCC-CCCceEECCCCHHHHHHHHHHHHH
Confidence 3667899999998875 566 35555 588888889998888
No 33
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A
Probab=21.65 E-value=49 Score=25.74 Aligned_cols=50 Identities=12% Similarity=0.171 Sum_probs=35.9
Q ss_pred cCCcEEEecCCCCcccc--------CHHHHHHHHHHHHHhhcccCCCCCCChhhhccCCHHHHHHHHHHccccc
Q 034242 18 RTETYVLLEPGVEEKFV--------TEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCEL 83 (100)
Q Consensus 18 q~D~YVvLEp~~~EqfL--------T~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CEL 83 (100)
..|.|+||-.+-==.+| |.+|+...+...|... .+.+++|+.|++.+..+
T Consensus 280 ~~d~flvLaSDGlwd~l~~~~~~~~s~~ei~~~v~~~l~~~----------------~~~~~~a~~Lv~~A~~~ 337 (401)
T 2j4o_A 280 GVTGFLVLMSEGLYKALEAAHGPGQANQEIAAMIDTEFAKQ----------------TSLDAVAQAVVDRVKRI 337 (401)
T ss_dssp TCCEEEEEECHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHC----------------SSHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEccchhhcccccccCCCCHHHHHHHHHHHHhcC----------------CCHHHHHHHHHHHHHHh
Confidence 34556777666444556 7888888887777643 57889999999998764
No 34
>1rty_A YVQK protein; all alpha-helical trimeric protein, structural genomics, PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: a.25.2.2
Probab=20.64 E-value=73 Score=23.38 Aligned_cols=41 Identities=20% Similarity=0.325 Sum_probs=29.4
Q ss_pred cCHHHHHHHHHHHHHhhcccCCCCCCChhhhcc----CCHHHHHHHHHHccc
Q 034242 34 VTEEELKARLKYWLENWAGQVGKGGLPPDLAKF----ATIDEAVAFLITNVC 81 (100)
Q Consensus 34 LT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~----~s~~~qaq~Lldt~C 81 (100)
+++ +-.++|+.|+..+.. .||+ |..| .|..+++-|+..|.|
T Consensus 85 i~~-~~v~~LE~~Id~~~~-----~l~p-l~~FILPGG~~~aA~LH~aRtv~ 129 (193)
T 1rty_A 85 LTE-ESVSFLETRIDAYTA-----EAPE-LKKFILPGGSKCASLLHIARTIT 129 (193)
T ss_dssp CCH-HHHHHHHHHHHHHHH-----HSCC-CCSCBCSCSSHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHHHHh-----hCCC-CCceeeCCCCHHHHHHHHHHHHH
Confidence 554 557889999988875 4543 3333 488888888888887
No 35
>2ah6_A BH1595, unknown conserved protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bacillus halodurans}
Probab=20.38 E-value=73 Score=23.76 Aligned_cols=41 Identities=15% Similarity=0.285 Sum_probs=29.4
Q ss_pred cCHHHHHHHHHHHHHhhcccCCCCCCChhhhcc----CCHHHHHHHHHHccc
Q 034242 34 VTEEELKARLKYWLENWAGQVGKGGLPPDLAKF----ATIDEAVAFLITNVC 81 (100)
Q Consensus 34 LT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~----~s~~~qaq~Lldt~C 81 (100)
++ ++-.++|+.|+..++. .||+ |..| +|..+++-++..|.|
T Consensus 98 i~-~~~v~~LE~~Id~~~~-----~l~p-l~~FILPGG~~~aA~LHvaRTv~ 142 (208)
T 2ah6_A 98 AK-QEIVDFLEQRIDAYIK-----EAPE-LERFILPGGSEAAASLHVCRTIA 142 (208)
T ss_dssp CC-HHHHHHHHHHHHHHHH-----HSCC-CCSCEESCSSHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHHh-----hCCC-CcceeeCCCCHHHHHHHHHHHHH
Confidence 45 4667889999988875 4544 3334 588888888888887
No 36
>2nt8_A Cobalamin adenosyltransferase; ATP binding; HET: ATP; 1.68A {Lactobacillus reuteri}
Probab=20.25 E-value=74 Score=24.02 Aligned_cols=41 Identities=17% Similarity=0.252 Sum_probs=29.6
Q ss_pred cCHHHHHHHHHHHHHhhcccCCCCCCChhhhcc----CCHHHHHHHHHHccc
Q 034242 34 VTEEELKARLKYWLENWAGQVGKGGLPPDLAKF----ATIDEAVAFLITNVC 81 (100)
Q Consensus 34 LT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~----~s~~~qaq~Lldt~C 81 (100)
++ ++-.++|+.|+..+.. .||+ |..| .|..+++-++..|.|
T Consensus 122 i~-~~~v~~LE~~Id~~~~-----~lpp-l~~FILPGGs~~aA~LHvaRTv~ 166 (223)
T 2nt8_A 122 KQ-EQPTVWLEEKIDNYTQ-----VVPA-VKKFILPGGTQLASALHVARTIT 166 (223)
T ss_dssp CC-HHHHHHHHHHHHHHHH-----HSCC-CSSCEESCSSHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHHh-----hCCC-CCceEeCCCCHHHHHHHHHHHHH
Confidence 45 4667889999988875 4544 3444 578888888888887
No 37
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii}
Probab=20.19 E-value=90 Score=22.75 Aligned_cols=47 Identities=4% Similarity=-0.120 Sum_probs=34.0
Q ss_pred CcEEEecCCCCccccCHHHHHHHHHHHHHhhcccCCCCCCChhhhccCCHHH--HHHHHHHcccc
Q 034242 20 ETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDE--AVAFLITNVCE 82 (100)
Q Consensus 20 D~YVvLEp~~~EqfLT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~--qaq~Lldt~CE 82 (100)
|.|+||-.+-==.+||.+|+...+...+..- .+.++ .|+.|++.+.+
T Consensus 258 d~~llLaSDGl~d~ls~~ei~~~v~~~~~~~----------------~~~~~~~~a~~L~~~A~~ 306 (324)
T 2i44_A 258 HRVMILATDGLWDVMSAAQAVEIAMQARQEG----------------RNPAQALVEMTLAEQQSR 306 (324)
T ss_dssp EEEEEEECHHHHTTCCHHHHHHHHHHHHHTT----------------CCHHHHHHHHHHHHHHHT
T ss_pred CeEEEEEcCchhccCCHHHHHHHHHHHHhcC----------------CCHHHHHHHHHHHHHHHh
Confidence 3477777765556799999988887766432 35667 89999998866
No 38
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=20.12 E-value=94 Score=20.60 Aligned_cols=34 Identities=26% Similarity=0.262 Sum_probs=27.0
Q ss_pred cCCcEEEecCCCC----ccccCHHHHHHHHHHHHHhhc
Q 034242 18 RTETYVLLEPGVE----EKFVTEEELKARLKYWLENWA 51 (100)
Q Consensus 18 q~D~YVvLEp~~~----EqfLT~~Ell~~Lk~~L~~~~ 51 (100)
..-++|++.-|++ +-++++++++.||...+.+.+
T Consensus 76 g~PT~i~f~~G~ev~Ri~G~~~~~~f~~~L~~~l~~~~ 113 (116)
T 3dml_A 76 FTPTFVLMAGDVESGRLEGYPGEDFFWPMLARLIGQAE 113 (116)
T ss_dssp SSSEEEEEETTEEEEEEECCCCHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEEECCEEEeeecCCCCHHHHHHHHHHHHhhcC
Confidence 4568999995543 238899999999999998874
Done!