BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>034247
MDKCRMRDLTVRASGSSDRNVVPIAPLQFESPVGQLLAQILQTHPHLLPAAIDQQLENIQ
IDKNVQREDTSQDLLYQPYGGGSGDRSNKLETATVAFWIT

High Scoring Gene Products

Symbol, full name Information P value
AT1G32160 protein from Arabidopsis thaliana 5.3e-15
AT1G48450 protein from Arabidopsis thaliana 5.7e-14
AT3G17800 protein from Arabidopsis thaliana 1.1e-11

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  034247
        (100 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2031760 - symbol:AT1G32160 "AT1G32160" species...   196  5.3e-15   1
TAIR|locus:2198055 - symbol:AT1G48450 "AT1G48450" species...   187  5.7e-14   1
TAIR|locus:2088490 - symbol:AT3G17800 "AT3G17800" species...   166  1.1e-11   1


>TAIR|locus:2031760 [details] [associations]
            symbol:AT1G32160 "AT1G32160" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009507 "chloroplast" evidence=IDA] [GO:0009570
            "chloroplast stroma" evidence=IDA] [GO:0009965 "leaf morphogenesis"
            evidence=RCA] [GO:0010155 "regulation of proton transport"
            evidence=RCA] [GO:0030154 "cell differentiation" evidence=RCA]
            [GO:0046777 "protein autophosphorylation" evidence=RCA]
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009570 EMBL:AC084165
            InterPro:IPR008479 Pfam:PF05542 HOGENOM:HOG000240370 EMBL:AY037196
            EMBL:AY087896 EMBL:BT002680 IPI:IPI00538936 PIR:A86446
            RefSeq:NP_564389.1 UniGene:At.24385 STRING:Q9FVR1 PaxDb:Q9FVR1
            PRIDE:Q9FVR1 EnsemblPlants:AT1G32160.1 GeneID:840108
            KEGG:ath:AT1G32160 TAIR:At1g32160 eggNOG:NOG282956
            InParanoid:Q9FVR1 OMA:DAFEMIQ PhylomeDB:Q9FVR1
            ProtClustDB:CLSN2688184 Genevestigator:Q9FVR1 Uniprot:Q9FVR1
        Length = 406

 Score = 196 (74.1 bits), Expect = 5.3e-15, P = 5.3e-15
 Identities = 40/75 (53%), Positives = 52/75 (69%)

Query:     5 RMRDLTVRASGSSD--RNVVPIAPLQFESPVGQLLAQILQTHPHLLPAAIDQQLENIQID 62
             R R +TVRASG  D   N  P+AP++ ESPVGQLL QIL+THPHLLP  +D+QLE    +
Sbjct:    57 RGRSVTVRASGDEDSNENFAPLAPVELESPVGQLLEQILRTHPHLLPVTVDEQLEKFAAE 116

Query:    63 KNVQREDTS--QDLL 75
                ++ D+S  QD+L
Sbjct:   117 SESRKADSSSTQDIL 131


>TAIR|locus:2198055 [details] [associations]
            symbol:AT1G48450 "AT1G48450" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] EMBL:CP002684
            GenomeReviews:CT485782_GR EMBL:AC020889 InterPro:IPR008479
            Pfam:PF05542 UniGene:At.15305 UniGene:At.27162 HOGENOM:HOG000240370
            EMBL:AY065051 EMBL:BT000942 IPI:IPI00529882 RefSeq:NP_175278.1
            IntAct:Q9LP80 EnsemblPlants:AT1G48450.1 GeneID:841266
            KEGG:ath:AT1G48450 TAIR:At1g48450 InParanoid:Q9LP80 OMA:MSFDGET
            PhylomeDB:Q9LP80 ProtClustDB:CLSN2688500 ArrayExpress:Q9LP80
            Genevestigator:Q9LP80 Uniprot:Q9LP80
        Length = 423

 Score = 187 (70.9 bits), Expect = 5.7e-14, P = 5.7e-14
 Identities = 37/67 (55%), Positives = 50/67 (74%)

Query:     7 RDLTVRASGSSDRNVVPIAPLQFESPVGQLLAQILQTHPHLLPAAIDQQLENIQIDKNVQ 66
             R   V+AS S D +   IAPLQ +SPVGQ L+QIL +HPHL+PAA++QQLE +QID++  
Sbjct:    66 RSFVVKASASGDASTESIAPLQLKSPVGQFLSQILVSHPHLVPAAVEQQLEQLQIDRDA- 124

Query:    67 REDTSQD 73
              E+ S+D
Sbjct:   125 -EEQSKD 130


>TAIR|locus:2088490 [details] [associations]
            symbol:AT3G17800 "AT3G17800" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0010224 "response to UV-B"
            evidence=IGI;IEP] EMBL:CP002686 GO:GO:0010224 UniGene:At.22111
            UniGene:At.71032 UniGene:At.74878 UniGene:At.74926
            InterPro:IPR008479 Pfam:PF05542 IPI:IPI00846743
            RefSeq:NP_001078173.1 PRIDE:F4J6F0 EnsemblPlants:AT3G17800.2
            GeneID:821048 KEGG:ath:AT3G17800 OMA:ESHVDAR Uniprot:F4J6F0
        Length = 427

 Score = 166 (63.5 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 35/68 (51%), Positives = 47/68 (69%)

Query:     7 RDLTVRASG-----SSDRNVVPIAPLQFESPVGQLLAQILQTHPHLLPAAIDQQLENIQI 61
             R   VRAS      SS  +  PIAPLQ +SP GQ L+QIL +HPHL+PAA++QQLE +Q 
Sbjct:    76 RSFVVRASSASNDASSGSSPKPIAPLQLQSPAGQFLSQILVSHPHLVPAAVEQQLEQLQT 135

Query:    62 DKNVQRED 69
             D++ Q ++
Sbjct:   136 DRDSQGQN 143


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.133   0.385    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      100       100   0.00091  102 3  11 22  0.41    30
                                                     29  0.47    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  564 (60 KB)
  Total size of DFA:  109 KB (2072 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.94u 0.08s 12.02t   Elapsed:  00:00:01
  Total cpu time:  11.94u 0.08s 12.02t   Elapsed:  00:00:01
  Start:  Mon May 20 15:53:23 2013   End:  Mon May 20 15:53:24 2013

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