BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034247
         (100 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q12KQ6|RDGC_SHEDO Recombination-associated protein RdgC OS=Shewanella denitrificans
           (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=rdgC PE=3
           SV=1
          Length = 303

 Score = 31.2 bits (69), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 22  VPIAPLQFESPVGQLLAQILQTHPHLLPAAIDQQLE 57
           +P+ PL F +P+ Q L Q LQ     LP A+  + E
Sbjct: 160 LPVIPLSFTTPIEQTLTQWLQAGESPLPFAMQDEAE 195


>sp|A8ADB3|TMCA_CITK8 tRNA(Met) cytidine acetyltransferase TmcA OS=Citrobacter koseri
           (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=tmcA
           PE=3 SV=1
          Length = 671

 Score = 31.2 bits (69), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 29  FESPVGQLLAQILQTHPH--LLPAAIDQQLENIQIDKNVQREDTSQDLLYQPYGGGS 83
           +  P G L+AQ L  H    L      +++  I +    QRE   Q L+ + YGG S
Sbjct: 429 YRRPRGNLVAQSLAAHGGDPLAATLTGRRVSRIAVHPARQREGIGQQLIAEAYGGAS 485


>sp|Q7T163|KDIS_DANRE Kinase D-interacting substrate of 220 kDa OS=Danio rerio
           GN=kidins220 PE=2 SV=2
          Length = 1672

 Score = 29.3 bits (64), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 11/39 (28%), Positives = 23/39 (58%)

Query: 40  ILQTHPHLLPAAIDQQLENIQIDKNVQREDTSQDLLYQP 78
           I  + PH++  AI+Q L ++  D N+   D  +++++ P
Sbjct: 804 IFASDPHIIIKAINQNLNSVLRDSNINGHDYMRNIVHLP 842


>sp|Q9EQG6|KDIS_RAT Kinase D-interacting substrate of 220 kDa OS=Rattus norvegicus
           GN=Kidins220 PE=1 SV=2
          Length = 1762

 Score = 29.3 bits (64), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 11/39 (28%), Positives = 23/39 (58%)

Query: 40  ILQTHPHLLPAAIDQQLENIQIDKNVQREDTSQDLLYQP 78
           I  + PH++  AI+Q L ++  D N+   D  +++++ P
Sbjct: 803 IFASDPHIIIKAINQNLNSVLRDSNINGHDYMRNIVHLP 841


>sp|Q9ULH0|KDIS_HUMAN Kinase D-interacting substrate of 220 kDa OS=Homo sapiens
           GN=KIDINS220 PE=1 SV=3
          Length = 1771

 Score = 29.3 bits (64), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 11/39 (28%), Positives = 23/39 (58%)

Query: 40  ILQTHPHLLPAAIDQQLENIQIDKNVQREDTSQDLLYQP 78
           I  + PH++  AI+Q L ++  D N+   D  +++++ P
Sbjct: 803 IFASDPHIIIKAINQNLNSVLRDSNINGHDYMRNIVHLP 841


>sp|O23913|AOX1B_ARATH Ubiquinol oxidase 1b, mitochondrial OS=Arabidopsis thaliana
          GN=AOX1B PE=1 SV=1
          Length = 325

 Score = 29.3 bits (64), Expect = 8.1,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 13/75 (17%)

Query: 34 GQLLAQILQTHPHLLPAAIDQQLENIQI----------DKNVQREDTSQDLLYQPYGGGS 83
          G  L +   TH HLL   +    ENI++              +++ T+++   +   GG 
Sbjct: 8  GAKLMETAVTHSHLLNPRVPLVTENIRVPAMGVVRVFSKMTFEKKKTTEE---KGSSGGK 64

Query: 84 GDRSNKLETATVAFW 98
           D+ NK E   V++W
Sbjct: 65 ADQGNKGEQLIVSYW 79


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.133    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,294,932
Number of Sequences: 539616
Number of extensions: 1282160
Number of successful extensions: 3248
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3243
Number of HSP's gapped (non-prelim): 13
length of query: 100
length of database: 191,569,459
effective HSP length: 69
effective length of query: 31
effective length of database: 154,335,955
effective search space: 4784414605
effective search space used: 4784414605
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)