Query 034247
Match_columns 100
No_of_seqs 56 out of 58
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 11:23:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034247.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034247hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK04750 ubiB putative ubiquin 70.9 3.3 7.1E-05 36.0 2.3 28 37-64 69-96 (537)
2 TIGR01982 UbiB 2-polyprenylphe 68.9 4.6 9.9E-05 33.6 2.7 32 33-64 63-94 (437)
3 PF11943 DUF3460: Protein of u 64.4 5.8 0.00013 26.0 2.0 26 29-58 3-28 (60)
4 PF15546 DUF4653: Domain of un 54.1 18 0.00039 29.3 3.5 38 45-82 151-192 (239)
5 PF07439 DUF1515: Protein of u 52.9 12 0.00027 27.3 2.2 44 48-92 2-54 (112)
6 PF09454 Vps23_core: Vps23 cor 45.9 16 0.00034 23.6 1.7 25 71-97 6-31 (65)
7 COG0661 AarF Predicted unusual 42.2 17 0.00037 31.6 1.9 29 37-65 75-103 (517)
8 KOG4801 Member of the steroid/ 41.9 3.7 8.1E-05 34.3 -2.1 40 24-63 202-247 (321)
9 COG1459 PulF Type II secretory 37.5 44 0.00096 28.1 3.6 58 33-98 106-168 (397)
10 PF12592 DUF3763: Protein of u 34.0 59 0.0013 20.7 3.0 25 42-66 25-54 (57)
11 PF09128 RGS-like: Regulator o 32.1 58 0.0013 25.2 3.2 45 20-65 62-115 (188)
12 PF10975 DUF2802: Protein of u 28.8 89 0.0019 20.3 3.2 43 50-94 8-51 (70)
13 PF08439 Peptidase_M3_N: Oligo 28.7 67 0.0015 19.8 2.5 34 32-65 22-55 (70)
14 PF14552 Tautomerase_2: Tautom 22.5 15 0.00032 24.5 -1.4 25 74-98 47-72 (82)
15 COG3721 HugX Putative heme iro 22.4 84 0.0018 24.6 2.5 30 34-63 15-44 (176)
16 KOG2391 Vacuolar sorting prote 22.3 70 0.0015 27.5 2.2 47 49-97 255-322 (365)
17 PF01118 Semialdhyde_dh: Semia 21.6 71 0.0015 21.4 1.8 16 32-47 10-25 (121)
18 PF03670 UPF0184: Uncharacteri 21.3 1.5E+02 0.0033 20.4 3.4 39 50-90 29-68 (83)
19 COG4619 ABC-type uncharacteriz 21.1 62 0.0014 26.0 1.6 60 35-95 77-150 (223)
20 PF07889 DUF1664: Protein of u 21.0 1.8E+02 0.0039 21.1 3.9 28 50-82 46-73 (126)
21 PF08278 DnaG_DnaB_bind: DNA p 20.5 2.8E+02 0.006 18.6 5.2 17 74-90 98-115 (127)
No 1
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=70.90 E-value=3.3 Score=36.05 Aligned_cols=28 Identities=29% Similarity=0.408 Sum_probs=24.6
Q ss_pred HHHHHhhCCCchHHHHHHHHHHHHHHHH
Q 034247 37 LAQILQTHPHLLPAAIDQQLENIQIDKN 64 (100)
Q Consensus 37 L~~iL~~~PhLf~aAv~qqLe~L~~drd 64 (100)
+.|+|-+.|+|||..+.++|.+||++-.
T Consensus 69 lGQ~LStR~DllP~~~~~eL~~Lqd~vp 96 (537)
T PRK04750 69 FGQMLSTRRDLFPPDIADELALLQDRVP 96 (537)
T ss_pred HHHHHHcCcccCCHHHHHHHHHHHcCCC
Confidence 5677779999999999999999998763
No 2
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=68.90 E-value=4.6 Score=33.57 Aligned_cols=32 Identities=31% Similarity=0.295 Sum_probs=26.5
Q ss_pred hhHHHHHHHhhCCCchHHHHHHHHHHHHHHHH
Q 034247 33 VGQLLAQILQTHPHLLPAAIDQQLENIQIDKN 64 (100)
Q Consensus 33 ~GqfL~~iL~~~PhLf~aAv~qqLe~L~~drd 64 (100)
.---|.|+|-+.|+|||...-++|++||++-.
T Consensus 63 ~fiKlGQ~lS~r~dllp~~~~~~L~~Lqd~v~ 94 (437)
T TIGR01982 63 TFIKFGQTLSTRADLLPADIAEELSLLQDRVP 94 (437)
T ss_pred hhHHHhHHHHhCcccCCHHHHHHHHHHhcCCC
Confidence 33446777779999999999999999998754
No 3
>PF11943 DUF3460: Protein of unknown function (DUF3460); InterPro: IPR021853 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 70 amino acids in length. This protein has a conserved WDK sequence motif.
Probab=64.37 E-value=5.8 Score=25.96 Aligned_cols=26 Identities=31% Similarity=0.549 Sum_probs=20.7
Q ss_pred CCCchhHHHHHHHhhCCCchHHHHHHHHHH
Q 034247 29 FESPVGQLLAQILQTHPHLLPAAIDQQLEN 58 (100)
Q Consensus 29 ~eSp~GqfL~~iL~~~PhLf~aAv~qqLe~ 58 (100)
-+|.+-|||.+++..||+| .++|++.
T Consensus 3 Y~Se~TqFl~~lk~~~Pel----e~~Q~~G 28 (60)
T PF11943_consen 3 YQSEITQFLNQLKAKHPEL----EEEQRAG 28 (60)
T ss_pred ccCHHHHHHHHHHHhCCch----HHHHHHh
Confidence 4789999999999999997 3455543
No 4
>PF15546 DUF4653: Domain of unknown function (DUF4653)
Probab=54.15 E-value=18 Score=29.29 Aligned_cols=38 Identities=13% Similarity=0.282 Sum_probs=24.9
Q ss_pred CCchHHHHHHHHHHHHHHHH---hhhhcC-CCCcchhhhcch
Q 034247 45 PHLLPAAIDQQLENIQIDKN---VQREDT-SQDLLYQPYGGG 82 (100)
Q Consensus 45 PhLf~aAv~qqLe~L~~drd---a~~e~s-~~d~LyrRIAev 82 (100)
|+-+.-+|.+..++||+.-. .++|.. -..|.|||+|=+
T Consensus 151 ~d~l~psva~Avq~Lq~~Er~KeqEkEKHhv~LvMYRRLALl 192 (239)
T PF15546_consen 151 PDPLLPSVAEAVQQLQAQERYKEQEKEKHHVHLVMYRRLALL 192 (239)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 66566677778888876532 233332 456999999854
No 5
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=52.88 E-value=12 Score=27.26 Aligned_cols=44 Identities=25% Similarity=0.318 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhc-------C--CCCcchhhhcchhhhhhhHHHH
Q 034247 48 LPAAIDQQLENIQIDKNVQRED-------T--SQDLLYQPYGGGSGDRSNKLET 92 (100)
Q Consensus 48 f~aAv~qqLe~L~~drda~~e~-------s--~~d~LyrRIAeve~Err~alEd 92 (100)
..+.+.||++.|+.+.+.-.++ | |--..||||-|+.+ |-.+||-
T Consensus 2 ~~a~~~~q~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~-Rv~~lEs 54 (112)
T PF07439_consen 2 IDAGLHQQLGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVE-RVTTLES 54 (112)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHH-HHHHHHH
Confidence 4567888888888887663222 2 22289999999832 3344443
No 6
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=45.92 E-value=16 Score=23.64 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=19.6
Q ss_pred CCCcchhhhcch-hhhhhhHHHHHHHHh
Q 034247 71 SQDLLYQPYGGG-SGDRSNKLETATVAF 97 (100)
Q Consensus 71 ~~d~LyrRIAev-e~Err~alEdimY~l 97 (100)
+.+.|++-|=|+ +++ .|+||.||.+
T Consensus 6 ~~~~l~~Ql~el~Aed--~AieDtiy~L 31 (65)
T PF09454_consen 6 AEDPLSNQLYELVAED--HAIEDTIYYL 31 (65)
T ss_dssp -SSHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 456888888888 776 4899999986
No 7
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=42.18 E-value=17 Score=31.63 Aligned_cols=29 Identities=34% Similarity=0.511 Sum_probs=24.7
Q ss_pred HHHHHhhCCCchHHHHHHHHHHHHHHHHh
Q 034247 37 LAQILQTHPHLLPAAIDQQLENIQIDKNV 65 (100)
Q Consensus 37 L~~iL~~~PhLf~aAv~qqLe~L~~drda 65 (100)
+.|+|-+.|.|||.....+|.+||+.-..
T Consensus 75 ~GQ~LStR~Dl~p~e~~~eL~~LQD~vpp 103 (517)
T COG0661 75 LGQILSTRPDLVPPEYAEELAKLQDRVPP 103 (517)
T ss_pred hhhHHhcCccccCHHHHHHHHHhhcCCCC
Confidence 34667799999999999999999987654
No 8
>KOG4801 consensus Member of the steroid/thyroid receptor superfamily [Signal transduction mechanisms]
Probab=41.87 E-value=3.7 Score=34.26 Aligned_cols=40 Identities=25% Similarity=0.356 Sum_probs=28.5
Q ss_pred CCCCCCCCchhHHHH------HHHhhCCCchHHHHHHHHHHHHHHH
Q 034247 24 IAPLQFESPVGQLLA------QILQTHPHLLPAAIDQQLENIQIDK 63 (100)
Q Consensus 24 ~APL~~eSp~GqfL~------~iL~~~PhLf~aAv~qqLe~L~~dr 63 (100)
..|+-..|-+-|-|. -|...|||||.+|.+.|.+.--++.
T Consensus 202 sT~fi~gsrank~lGmggtrgrifiKhPhlFk~aadpqdKhwlaeq 247 (321)
T KOG4801|consen 202 STRFITGSRANKVLGMGGTRGRIFIKHPHLFKVAADPQDKHWLAEQ 247 (321)
T ss_pred ccceeehhhhHHhcCCCCccceeeecCchheeeccCcccchhHHHH
Confidence 455555666655553 5788999999999999966655443
No 9
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=37.55 E-value=44 Score=28.14 Aligned_cols=58 Identities=14% Similarity=0.100 Sum_probs=38.0
Q ss_pred hhHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhcCCCC-cchhhhcch-hh---hhhhHHHHHHHHhh
Q 034247 33 VGQLLAQILQTHPHLLPAAIDQQLENIQIDKNVQREDTSQD-LLYQPYGGG-SG---DRSNKLETATVAFW 98 (100)
Q Consensus 33 ~GqfL~~iL~~~PhLf~aAv~qqLe~L~~drda~~e~s~~d-~LyrRIAev-e~---Err~alEdimY~lI 98 (100)
.|+=|++.|+.+|+.||...-.++. .-|.+|.- -..+|+|+. |+ -|++-..-..|=.|
T Consensus 106 ~G~sls~al~~~~~~F~~~~~~~v~--------~gE~~G~L~~~l~~la~y~e~~~~lr~Ki~~Al~YP~v 168 (397)
T COG1459 106 SGKSLSEALAQLPGVFPDLYVAMVA--------AGERSGNLDEVLQRLAKYLEKQAALRKKIKSALIYPLV 168 (397)
T ss_pred CCCcHHHHHHhCcccCCHHHHHHHH--------HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4778999999999999988776653 34444443 566788877 43 23444444555443
No 10
>PF12592 DUF3763: Protein of unknown function (DUF3763); InterPro: IPR022547 This domain is found in bacterial regulartory ATPases 3.6.3. from EC, and is approximately 60 amino acids in length. The domain is found C-terminal to PF07728 from PFAM. There is a single completely conserved residue F that may be functionally important. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; PDB: 3NBX_X.
Probab=33.98 E-value=59 Score=20.67 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=17.8
Q ss_pred hhCCCch-----HHHHHHHHHHHHHHHHhh
Q 034247 42 QTHPHLL-----PAAIDQQLENIQIDKNVQ 66 (100)
Q Consensus 42 ~~~PhLf-----~aAv~qqLe~L~~drda~ 66 (100)
+..|||| +++|++-|..+....+..
T Consensus 25 ~~qPhlFI~~~wl~~IE~Sl~~l~eqL~q~ 54 (57)
T PF12592_consen 25 QHQPHLFIDSEWLAAIEASLQQLAEQLEQL 54 (57)
T ss_dssp TT---TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCcCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4579997 889999999988887764
No 11
>PF09128 RGS-like: Regulator of G protein signalling-like domain; InterPro: IPR015212 This entry represents a domain consisting of twelve helices that fold into a compact structure that contains the overall structural scaffold observed in other regulator of G protein signalling (RGS) proteins and three additional helical elements that pack closely to it. Helices 1-9 comprise the RGS fold, in which helices 4-7 form a classic antiparallel bundle adjacent to the other helices. Like other RGS structures, helices 7 and 8 span the length of the folded domain and form essentially one continuous helix with a kink in the middle. Helices 10-12 form an apparently stable C-terminal extension of the structural domain, and although other RGS proteins lack this structure, these elements are intimately associated with the rest of the structural framework by hydrophobic interactions. This domain binds to active G-alpha proteins, promoting GTP hydrolysis by the alpha subunit of heterotrimeric G proteins, thereby inactivating the G protein and rapidly switching off G protein-coupled receptor signalling pathways []. ; GO: 0005089 Rho guanyl-nucleotide exchange factor activity, 0005737 cytoplasm; PDB: 3CX6_B 3CX8_B 3CX7_B 1HTJ_F 1SHZ_C 3AB3_D 1IAP_A.
Probab=32.13 E-value=58 Score=25.16 Aligned_cols=45 Identities=24% Similarity=0.302 Sum_probs=25.1
Q ss_pred CCCCCCCCCCCCchhHHHHHHHhhCC---------CchHHHHHHHHHHHHHHHHh
Q 034247 20 NVVPIAPLQFESPVGQLLAQILQTHP---------HLLPAAIDQQLENIQIDKNV 65 (100)
Q Consensus 20 ~~~~~APL~~eSp~GqfL~~iL~~~P---------hLf~aAv~qqLe~L~~drda 65 (100)
+-.+.|||.. +.--..+..|-+.+| +.|-.+.+.++..++...++
T Consensus 62 FL~~~ApL~v-~v~~~v~~ei~~~~~~~~~~e~~r~~f~~~~~~a~~eI~~qL~D 115 (188)
T PF09128_consen 62 FLDPGAPLRV-NVPESVASEIDRTRPELIKEEILRQIFQEAQQRALPEIQEQLED 115 (188)
T ss_dssp HTSTT-TT------HHHHHHHTT-HHHHCTTHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCCcee-cCCHHHHHhHHhhccccCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999 456677777743333 45666766666666666655
No 12
>PF10975 DUF2802: Protein of unknown function (DUF2802); InterPro: IPR021244 This bacterial family of proteins has no known function.
Probab=28.84 E-value=89 Score=20.33 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCcchhhhcch-hhhhhhHHHHHH
Q 034247 50 AAIDQQLENIQIDKNVQREDTSQDLLYQPYGGG-SGDRSNKLETAT 94 (100)
Q Consensus 50 aAv~qqLe~L~~drda~~e~s~~d~LyrRIAev-e~Err~alEdim 94 (100)
..++++|+.|.+..+.-+...+++.+|.|-.++ +.= ..++|||
T Consensus 8 ~~l~~~l~~l~~~~~~~~~~d~~~~~Y~~A~klv~~G--a~~~el~ 51 (70)
T PF10975_consen 8 AELEQQLKQLEDQQEELEQRDPDSPLYSQAIKLVRQG--ASVEELM 51 (70)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHcC--CCHHHHH
Confidence 356777887777766644333566899998877 432 3445554
No 13
>PF08439 Peptidase_M3_N: Oligopeptidase F; InterPro: IPR013647 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found towards the N terminus of metallopeptidases belonging to MEROPS peptidase subfamily M3B (oligopeptidase F, clan MA). An example protein is Lactococcus lactisPepF []. The function of this N-terminal domain is unknown.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2QR4_B 3CE2_A.
Probab=28.70 E-value=67 Score=19.76 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=25.0
Q ss_pred chhHHHHHHHhhCCCchHHHHHHHHHHHHHHHHh
Q 034247 32 PVGQLLAQILQTHPHLLPAAIDQQLENIQIDKNV 65 (100)
Q Consensus 32 p~GqfL~~iL~~~PhLf~aAv~qqLe~L~~drda 65 (100)
+..-+|..+++..||.++..+++-|-.+..-..+
T Consensus 22 ~y~~~l~~i~r~k~H~Ls~~~E~lLa~~~~~~~a 55 (70)
T PF08439_consen 22 EYRFYLEEIRRYKKHTLSEEEEKLLAKLSPGLSA 55 (70)
T ss_dssp GGHHHHHHHHGGGGG---HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHhCCcCCCHHHHHHHHHhhhHHhh
Confidence 5667899999999999999999999888544443
No 14
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=22.53 E-value=15 Score=24.51 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=18.7
Q ss_pred cchhhhcch-hhhhhhHHHHHHHHhh
Q 034247 74 LLYQPYGGG-SGDRSNKLETATVAFW 98 (100)
Q Consensus 74 ~LyrRIAev-e~Err~alEdimY~lI 98 (100)
-|||+|++- +.++-..-+|||-+++
T Consensus 47 ~ly~~l~~~L~~~~gi~p~Dv~I~l~ 72 (82)
T PF14552_consen 47 ALYRALAERLAEKLGIRPEDVMIVLV 72 (82)
T ss_dssp HHHHHHHHHHHHHH---GGGEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCHHHEEEEEE
Confidence 799999999 8889999999986553
No 15
>COG3721 HugX Putative heme iron utilization protein [Inorganic ion transport and metabolism]
Probab=22.41 E-value=84 Score=24.55 Aligned_cols=30 Identities=23% Similarity=0.271 Sum_probs=24.0
Q ss_pred hHHHHHHHhhCCCchHHHHHHHHHHHHHHH
Q 034247 34 GQLLAQILQTHPHLLPAAIDQQLENIQIDK 63 (100)
Q Consensus 34 GqfL~~iL~~~PhLf~aAv~qqLe~L~~dr 63 (100)
-+-|++.|.++|...++|+.+|++----|.
T Consensus 15 q~~~~~~L~~qPdg~~eamA~~~~v~~~eI 44 (176)
T COG3721 15 QVSLAEFLATQPDGTLEAMAEQYNVTELEI 44 (176)
T ss_pred HHHHHHHHHhCCCCcHHHHHHHhCCCHHHH
Confidence 456888899999999999999987544444
No 16
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.29 E-value=70 Score=27.51 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHh--hhh-----c--C-----------CCCcchhhhcch-hhhhhhHHHHHHHHh
Q 034247 49 PAAIDQQLENIQIDKNV--QRE-----D--T-----------SQDLLYQPYGGG-SGDRSNKLETATVAF 97 (100)
Q Consensus 49 ~aAv~qqLe~L~~drda--~~e-----~--s-----------~~d~LyrRIAev-e~Err~alEdimY~l 97 (100)
..+.+||+..|+.+.|- .|. . . .++.|||-|=|. +.| .|+||++|.|
T Consensus 255 ~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~~~~~D~~~~~~~~l~kq~l~~~A~d--~aieD~i~~L 322 (365)
T KOG2391|consen 255 KETLEQQLQSLQKNIDILKSKVREALEKAENLEALDIDEAIECTAPLYKQILECYALD--LAIEDAIYSL 322 (365)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCcCCCchhhhhccchHHHHHHHhhhhh--hHHHHHHHHH
Confidence 45777888878776653 111 0 0 455899999888 876 6999999976
No 17
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=21.65 E-value=71 Score=21.42 Aligned_cols=16 Identities=38% Similarity=0.675 Sum_probs=13.9
Q ss_pred chhHHHHHHHhhCCCc
Q 034247 32 PVGQLLAQILQTHPHL 47 (100)
Q Consensus 32 p~GqfL~~iL~~~PhL 47 (100)
-+|+-|...|.+||++
T Consensus 10 ~vG~~l~~lL~~hp~~ 25 (121)
T PF01118_consen 10 YVGRELLRLLAEHPDF 25 (121)
T ss_dssp HHHHHHHHHHHHTSTE
T ss_pred HHHHHHHHHHhcCCCc
Confidence 4799999999999986
No 18
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=21.26 E-value=1.5e+02 Score=20.45 Aligned_cols=39 Identities=21% Similarity=0.214 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCcchhhhcch-hhhhhhHH
Q 034247 50 AAIDQQLENIQIDKNVQREDTSQDLLYQPYGGG-SGDRSNKL 90 (100)
Q Consensus 50 aAv~qqLe~L~~drda~~e~s~~d~LyrRIAev-e~Err~al 90 (100)
++|..+|.+|..-.|.-.+ ..|-|+-|+-++ +..|+.-.
T Consensus 29 ~~ins~LD~Lns~LD~LE~--rnD~l~~~L~~LLesnrq~R~ 68 (83)
T PF03670_consen 29 AAINSMLDQLNSCLDHLEQ--RNDHLHAQLQELLESNRQIRL 68 (83)
T ss_pred HHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHH
Confidence 7899999999999888444 477888899888 76665543
No 19
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=21.09 E-value=62 Score=26.04 Aligned_cols=60 Identities=13% Similarity=0.217 Sum_probs=39.0
Q ss_pred HHHHHHHhhCCCchHHHHHHH------HHHHHHHHHhhhhc---C-CCC-cchhhhcch-hhhhhh--HHHHHHH
Q 034247 35 QLLAQILQTHPHLLPAAIDQQ------LENIQIDKNVQRED---T-SQD-LLYQPYGGG-SGDRSN--KLETATV 95 (100)
Q Consensus 35 qfL~~iL~~~PhLf~aAv~qq------Le~L~~drda~~e~---s-~~d-~LyrRIAev-e~Err~--alEdimY 95 (100)
|..||. ...|.||+-.|+.- +.+=+.||+++.+- - -.+ .|-++|.++ -.|+++ -+-.+||
T Consensus 77 q~VsY~-~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~ 150 (223)
T COG4619 77 QQVSYC-AQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQF 150 (223)
T ss_pred HHHHHH-HcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhc
Confidence 555554 55799999999974 44556677775432 1 233 999999999 555543 3444444
No 20
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=21.00 E-value=1.8e+02 Score=21.14 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCcchhhhcch
Q 034247 50 AAIDQQLENIQIDKNVQREDTSQDLLYQPYGGG 82 (100)
Q Consensus 50 aAv~qqLe~L~~drda~~e~s~~d~LyrRIAev 82 (100)
+.|-+||+++.+...+++.+ |=.||..|
T Consensus 46 ~~v~kql~~vs~~l~~tKkh-----LsqRId~v 73 (126)
T PF07889_consen 46 ASVSKQLEQVSESLSSTKKH-----LSQRIDRV 73 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 46789999999998887764 45677777
No 21
>PF08278 DnaG_DnaB_bind: DNA primase DnaG DnaB-binding ; InterPro: IPR013173 Eubacterial DnaG primases interact with several factors to form the replisome. One of these factors is DnaB, a helicase. This domain has been demonstrated to be responsible for the interaction between DnaG and DnaB []. This domain has a multi-helical structure that forms an orthogonal bundle [].; GO: 0003896 DNA primase activity, 0006269 DNA replication, synthesis of RNA primer; PDB: 2HAJ_A 1T3W_B.
Probab=20.49 E-value=2.8e+02 Score=18.55 Aligned_cols=17 Identities=18% Similarity=0.024 Sum_probs=9.9
Q ss_pred cchhhhcch-hhhhhhHH
Q 034247 74 LLYQPYGGG-SGDRSNKL 90 (100)
Q Consensus 74 ~LyrRIAev-e~Err~al 90 (100)
.+-+||+++ .+.++..|
T Consensus 98 ~~~~~i~~L~~k~~~~~L 115 (127)
T PF08278_consen 98 ALERRIEELKAKPRRGGL 115 (127)
T ss_dssp HHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHHhhccCCc
Confidence 456777777 66665444
Done!