Query 034247
Match_columns 100
No_of_seqs 56 out of 58
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 19:33:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034247.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034247hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f6m_A Suppressor protein STP2 45.5 9.5 0.00032 24.2 1.6 21 75-97 4-25 (65)
2 1y74_B MLIN-2/CASK, peripheral 43.5 4.3 0.00015 23.5 -0.3 22 24-47 12-33 (50)
3 3o7i_A OHCU decarboxylase; lya 34.3 55 0.0019 23.9 4.4 21 74-94 155-176 (189)
4 3c1q_A General secretion pathw 27.7 25 0.00084 22.4 1.4 47 33-87 60-108 (123)
5 1zoq_C CREB-binding protein, i 21.1 40 0.0014 20.4 1.3 24 31-54 15-39 (47)
6 2p22_A Suppressor protein STP2 21.1 45 0.0015 24.5 1.8 25 71-97 109-134 (174)
7 1baz_A ARC repressor; transcri 18.6 39 0.0013 19.6 0.9 25 73-97 16-41 (53)
8 2qsr_A Transcription-repair co 18.0 41 0.0014 23.8 1.1 9 74-82 32-40 (173)
9 1uii_A Geminin; human, DNA rep 16.6 56 0.0019 21.7 1.4 12 83-94 34-45 (83)
10 4gox_A Polyketide synthase; ol 16.3 52 0.0018 23.3 1.2 19 29-48 33-51 (313)
No 1
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=45.48 E-value=9.5 Score=24.23 Aligned_cols=21 Identities=14% Similarity=-0.037 Sum_probs=14.7
Q ss_pred chhhhcch-hhhhhhHHHHHHHHh
Q 034247 75 LYQPYGGG-SGDRSNKLETATVAF 97 (100)
Q Consensus 75 LyrRIAev-e~Err~alEdimY~l 97 (100)
||+.+=+. +.| .|+||.||+|
T Consensus 4 l~~Qll~l~Aed--~AieDaiy~L 25 (65)
T 2f6m_A 4 GLNQLYNLVAQD--YALTDTIEAL 25 (65)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHH
Confidence 45555555 555 4899999986
No 2
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=43.52 E-value=4.3 Score=23.50 Aligned_cols=22 Identities=32% Similarity=0.461 Sum_probs=17.3
Q ss_pred CCCCCCCCchhHHHHHHHhhCCCc
Q 034247 24 IAPLQFESPVGQLLAQILQTHPHL 47 (100)
Q Consensus 24 ~APL~~eSp~GqfL~~iL~~~PhL 47 (100)
++|+. .||.++-|..||++ ||+
T Consensus 12 L~~~~-~~~~~~EL~~lL~~-PHf 33 (50)
T 1y74_B 12 ISCYP-ENNDAKELKRILTQ-PHF 33 (50)
T ss_dssp HHTCS-SCHHHHHHHHHHHS-HHH
T ss_pred HhcCC-CChHHHHHHHHHcC-HHH
Confidence 34553 48999999999987 985
No 3
>3o7i_A OHCU decarboxylase; lyase; 1.50A {Klebsiella pneumoniae subsp} PDB: 3o7h_A 3o7j_A* 3o7k_A
Probab=34.35 E-value=55 Score=23.95 Aligned_cols=21 Identities=10% Similarity=0.044 Sum_probs=18.7
Q ss_pred cchhhhcch-hhhhhhHHHHHH
Q 034247 74 LLYQPYGGG-SGDRSNKLETAT 94 (100)
Q Consensus 74 ~LyrRIAev-e~Err~alEdim 94 (100)
.|-+||.-= +.|++.+++||.
T Consensus 155 ~l~~Rl~nd~e~E~~~Al~Ev~ 176 (189)
T 3o7i_A 155 ALTRRLQHTADEEVAEALAQLR 176 (189)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 678999988 999999999974
No 4
>3c1q_A General secretion pathway protein F; type 2 secretion system, T2SS, T4PB, inner membrane membrane, transmembrane, transport protein; HET: MSE PE5; 1.70A {Vibrio cholerae} PDB: 2vmb_A* 2vma_A*
Probab=27.72 E-value=25 Score=22.37 Aligned_cols=47 Identities=13% Similarity=0.179 Sum_probs=28.4
Q ss_pred hhHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhcCCCC-cchhhhcch-hhhhh
Q 034247 33 VGQLLAQILQTHPHLLPAAIDQQLENIQIDKNVQREDTSQD-LLYQPYGGG-SGDRS 87 (100)
Q Consensus 33 ~GqfL~~iL~~~PhLf~aAv~qqLe~L~~drda~~e~s~~d-~LyrRIAev-e~Err 87 (100)
.|+-|+.-|..+|..||..+-+.+. .-|++|.. -...++|+. +++.+
T Consensus 60 ~G~sls~Al~~~~~~fp~~~~~mi~--------~GE~sG~L~~~L~~la~~~e~~~~ 108 (123)
T 3c1q_A 60 EGYTLSDSLGDYPHVFDELFRSMVA--------AGEKSGHLDSVLERLADYAENRQK 108 (123)
T ss_dssp TTCCHHHHHTTCTTTSCHHHHHHHH--------HHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHhccccCCHHHHHHHH--------HHHHhCcHHHHHHHHHHHHHHHHH
Confidence 4677888888888888876544331 22233433 555667777 55443
No 5
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=21.08 E-value=40 Score=20.37 Aligned_cols=24 Identities=42% Similarity=0.627 Sum_probs=18.3
Q ss_pred Cch-hHHHHHHHhhCCCchHHHHHH
Q 034247 31 SPV-GQLLAQILQTHPHLLPAAIDQ 54 (100)
Q Consensus 31 Sp~-GqfL~~iL~~~PhLf~aAv~q 54 (100)
||. -|..-.||++.|+|.-|-+.|
T Consensus 15 sp~qqqqvl~ILksnPqLMAAfIkQ 39 (47)
T 1zoq_C 15 SPQQQQQVLNILKSNPQLMAAFIKQ 39 (47)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 443 356778999999999887765
No 6
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=21.05 E-value=45 Score=24.48 Aligned_cols=25 Identities=8% Similarity=-0.075 Sum_probs=20.0
Q ss_pred CCCcchhhhcch-hhhhhhHHHHHHHHh
Q 034247 71 SQDLLYQPYGGG-SGDRSNKLETATVAF 97 (100)
Q Consensus 71 ~~d~LyrRIAev-e~Err~alEdimY~l 97 (100)
+...||+.+=++ +.+ .|+||.||+|
T Consensus 109 ~~~~l~~Qll~l~Aed--~AieDaIy~L 134 (174)
T 2p22_A 109 AKTDGLNQLYNLVAQD--YALTDTIECL 134 (174)
T ss_dssp CSSHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 445788888888 776 4999999987
No 7
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=18.62 E-value=39 Score=19.63 Aligned_cols=25 Identities=0% Similarity=-0.226 Sum_probs=16.4
Q ss_pred Ccchhhhcch-hhhhhhHHHHHHHHh
Q 034247 73 DLLYQPYGGG-SGDRSNKLETATVAF 97 (100)
Q Consensus 73 d~LyrRIAev-e~Err~alEdimY~l 97 (100)
+-||++|++. +.+-+..=.+|.|++
T Consensus 16 ~eL~~~l~~~A~~~grS~N~~i~~~L 41 (53)
T 1baz_A 16 REVLDLVRKVAEENGRSVNSEIYQRV 41 (53)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3688888888 666665555555543
No 8
>2qsr_A Transcription-repair coupling factor; structural genomics, PSI-2, protein ST initiative; 3.10A {Streptococcus pneumoniae}
Probab=17.95 E-value=41 Score=23.85 Aligned_cols=9 Identities=11% Similarity=0.058 Sum_probs=8.5
Q ss_pred cchhhhcch
Q 034247 74 LLYQPYGGG 82 (100)
Q Consensus 74 ~LyrRIAev 82 (100)
.+|||||.+
T Consensus 32 ~lYkria~~ 40 (173)
T 2qsr_A 32 EIYKKIRQI 40 (173)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHcC
Confidence 799999999
No 9
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=16.64 E-value=56 Score=21.68 Aligned_cols=12 Identities=25% Similarity=0.224 Sum_probs=9.8
Q ss_pred hhhhhhHHHHHH
Q 034247 83 SGDRSNKLETAT 94 (100)
Q Consensus 83 e~Err~alEdim 94 (100)
+.+||+||+|.+
T Consensus 34 AE~RR~AL~eaL 45 (83)
T 1uii_A 34 AEKRRKALYEAL 45 (83)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 568999998865
No 10
>4gox_A Polyketide synthase; olefin synthase, hydrocarbon, sulfotran PAPS, PAP, 3'phosphoadenosine-5'phosphosulfate, transferase; HET: A3P; 2.15A {Synechococcus SP}
Probab=16.27 E-value=52 Score=23.31 Aligned_cols=19 Identities=37% Similarity=0.413 Sum_probs=14.0
Q ss_pred CCCchhHHHHHHHhhCCCch
Q 034247 29 FESPVGQLLAQILQTHPHLL 48 (100)
Q Consensus 29 ~eSp~GqfL~~iL~~~PhLf 48 (100)
|+|.. -+|.++|..||+++
T Consensus 33 pRSGT-TlL~~iL~~Hp~v~ 51 (313)
T 4gox_A 33 PRSGS-TLLRVMLAGHPGLY 51 (313)
T ss_dssp TTSSH-HHHHHHHHTSTTEE
T ss_pred CCCHH-HHHHHHHHcCCCCc
Confidence 45544 48899999999865
Done!