Query 034247
Match_columns 100
No_of_seqs 56 out of 58
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 19:33:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034247.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034247hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cvoa1 c.2.1.3 (A:68-218,A:38 44.7 4.4 0.00032 26.7 1.6 15 33-47 17-31 (183)
2 d2g17a1 c.2.1.3 (A:1-153,A:309 42.4 5.6 0.00041 25.8 1.9 15 33-47 13-27 (179)
3 d1vkna1 c.2.1.3 (A:1-144,A:308 33.2 9.4 0.00069 25.5 1.9 15 33-47 13-27 (176)
4 d1sgoa_ d.82.3.1 (A:) Hypothet 30.4 22 0.0016 23.7 3.4 54 7-62 83-136 (139)
5 d1zoqc1 a.153.1.1 (C:2065-2111 28.0 12 0.00085 21.2 1.3 26 29-54 13-39 (47)
6 d2f6ma1 a.2.17.1 (A:322-385) V 23.0 16 0.0012 21.6 1.4 11 87-97 14-24 (64)
7 d1r5sa_ f.50.1.1 (A:) Gap junc 18.8 19 0.0014 24.0 1.1 20 19-38 20-39 (132)
8 d1n5ua3 a.126.1.1 (A:389-584) 17.6 1.3E+02 0.0095 19.7 5.5 57 33-89 137-194 (196)
9 d2gz1a1 c.2.1.3 (A:2-127,A:330 13.4 46 0.0033 20.8 2.0 14 33-46 13-26 (154)
10 d1fp1d2 c.66.1.12 (D:129-372) 12.5 44 0.0032 22.6 1.7 21 27-47 86-106 (244)
No 1
>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}
Probab=44.66 E-value=4.4 Score=26.73 Aligned_cols=15 Identities=27% Similarity=0.709 Sum_probs=13.9
Q ss_pred hhHHHHHHHhhCCCc
Q 034247 33 VGQLLAQILQTHPHL 47 (100)
Q Consensus 33 ~GqfL~~iL~~~PhL 47 (100)
+||-|-.+|.+||+.
T Consensus 17 vG~elirLL~~HP~~ 31 (183)
T d2cvoa1 17 TGAEIVRLLANHPQF 31 (183)
T ss_dssp HHHHHHHHHTTCSSE
T ss_pred HHHHHHHHHHhCCCc
Confidence 799999999999974
No 2
>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}
Probab=42.41 E-value=5.6 Score=25.82 Aligned_cols=15 Identities=33% Similarity=0.711 Sum_probs=13.9
Q ss_pred hhHHHHHHHhhCCCc
Q 034247 33 VGQLLAQILQTHPHL 47 (100)
Q Consensus 33 ~GqfL~~iL~~~PhL 47 (100)
+|+-|-.+|.+||+.
T Consensus 13 vG~eLlrlL~~HP~~ 27 (179)
T d2g17a1 13 AGAELVSYVNRHPHM 27 (179)
T ss_dssp HHHHHHHHHHHCTTE
T ss_pred HHHHHHHHHHhCCCC
Confidence 799999999999985
No 3
>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}
Probab=33.17 E-value=9.4 Score=25.53 Aligned_cols=15 Identities=33% Similarity=0.654 Sum_probs=13.6
Q ss_pred hhHHHHHHHhhCCCc
Q 034247 33 VGQLLAQILQTHPHL 47 (100)
Q Consensus 33 ~GqfL~~iL~~~PhL 47 (100)
+|+-|-.+|.+||+.
T Consensus 13 vG~eLirlL~~HP~~ 27 (176)
T d1vkna1 13 TGLELVRLLKNHPEA 27 (176)
T ss_dssp HHHHHHHHHHHCTTE
T ss_pred HHHHHHHHHHhCCCc
Confidence 799999999999985
No 4
>d1sgoa_ d.82.3.1 (A:) Hypothetical protein c14orf129, hspc210 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.41 E-value=22 Score=23.67 Aligned_cols=54 Identities=20% Similarity=0.178 Sum_probs=34.9
Q ss_pred cceEEEeccCCCCCCCCCCCCCCCCchhHHHHHHHhhCCCchHHHHHHHHHHHHHH
Q 034247 7 RDLTVRASGSSDRNVVPIAPLQFESPVGQLLAQILQTHPHLLPAAIDQQLENIQID 62 (100)
Q Consensus 7 r~~~vrAs~~~~~~~~~~APL~~eSp~GqfL~~iL~~~PhLf~aAv~qqLe~L~~d 62 (100)
+++.|..+....=+..+..|- .+|+. .+|.+|--...+-|-.+..++|+.|+.+
T Consensus 83 ~GF~Vn~s~~d~fdp~~~~~~-~etl~-~LL~~iSP~f~~~F~~~L~~kLe~L~~~ 136 (139)
T d1sgoa_ 83 AGLKVVGYAFDQVDDHLQTPY-HETVY-SLLDTLSPAYREAFGNALLQRLEALKRD 136 (139)
T ss_dssp TEEEEEESSTTCCCTTCCCCE-ESSSH-HHHHHHCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CeEEEecccccccCCCccccc-cccHH-HHHHHhCHHHHHHHHHHHHHHHHHHHhc
Confidence 566665553332122333342 46655 4778888788888889999999999764
No 5
>d1zoqc1 a.153.1.1 (C:2065-2111) Nuclear receptor coactivator CBP/p300 ibid domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.97 E-value=12 Score=21.24 Aligned_cols=26 Identities=38% Similarity=0.533 Sum_probs=19.2
Q ss_pred CCCchh-HHHHHHHhhCCCchHHHHHH
Q 034247 29 FESPVG-QLLAQILQTHPHLLPAAIDQ 54 (100)
Q Consensus 29 ~eSp~G-qfL~~iL~~~PhLf~aAv~q 54 (100)
|.||.- |.+-.||+++|+|.-+-+.|
T Consensus 13 P~sP~QQqQvL~ILksNP~lmaaFIkQ 39 (47)
T d1zoqc1 13 PSSPQQQQQVLNILKSNPQLMAAFIKQ 39 (47)
T ss_dssp CCCHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 345543 46778999999999887765
No 6
>d2f6ma1 a.2.17.1 (A:322-385) Vacuolar protein sorting-associated protein 23, VPS23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.98 E-value=16 Score=21.64 Aligned_cols=11 Identities=18% Similarity=0.157 Sum_probs=8.9
Q ss_pred hhHHHHHHHHh
Q 034247 87 SNKLETATVAF 97 (100)
Q Consensus 87 r~alEdimY~l 97 (100)
-.|+||.||+|
T Consensus 14 d~AieDaiy~L 24 (64)
T d2f6ma1 14 DYALTDTIEAL 24 (64)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35899999986
No 7
>d1r5sa_ f.50.1.1 (A:) Gap junction alpha-1 protein, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=18.77 E-value=19 Score=23.99 Aligned_cols=20 Identities=40% Similarity=0.426 Sum_probs=15.7
Q ss_pred CCCCCCCCCCCCCchhHHHH
Q 034247 19 RNVVPIAPLQFESPVGQLLA 38 (100)
Q Consensus 19 ~~~~~~APL~~eSp~GqfL~ 38 (100)
+-++|.|||.|-||-|--|.
T Consensus 20 gcssptaplspmsppgykl~ 39 (132)
T d1r5sa_ 20 GCSSPTAPLSPMSPPGYKLV 39 (132)
T ss_dssp CCCCSCCSCSCCCCCCCCSC
T ss_pred CcCCCCCCCCCCCCCCceee
Confidence 34789999999999885543
No 8
>d1n5ua3 a.126.1.1 (A:389-584) Serum albumin {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.59 E-value=1.3e+02 Score=19.65 Aligned_cols=57 Identities=5% Similarity=0.059 Sum_probs=33.0
Q ss_pred hhHHHHHHHhhCCCchHHHHHHHHHHHHHHHHh-hhhcCCCCcchhhhcchhhhhhhH
Q 034247 33 VGQLLAQILQTHPHLLPAAIDQQLENIQIDKNV-QREDTSQDLLYQPYGGGSGDRSNK 89 (100)
Q Consensus 33 ~GqfL~~iL~~~PhLf~aAv~qqLe~L~~drda-~~e~s~~d~LyrRIAeve~Err~a 89 (100)
.++||-.+-+.||++....+-.-.+....-.+. =+++....++-...+.+-.+.|.+
T Consensus 137 ~~~fl~e~~rrhP~~~~~~ll~~a~~y~~~~~~CC~~ed~~~Cf~~e~~~l~~~~~a~ 194 (196)
T d1n5ua3 137 KQTALVELVKHKPKATKEQLKAVMDDFAAFVEKCCKADDKETCFAEEGKKLVAASQAA 194 (196)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHSSSSCSSTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhhHHHHHHHHHH
Confidence 488999999999999876544444433333332 011223447666666664444443
No 9
>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}
Probab=13.35 E-value=46 Score=20.79 Aligned_cols=14 Identities=21% Similarity=0.425 Sum_probs=12.3
Q ss_pred hhHHHHHHHhhCCC
Q 034247 33 VGQLLAQILQTHPH 46 (100)
Q Consensus 33 ~GqfL~~iL~~~Ph 46 (100)
+|+-|-.+|.+||+
T Consensus 13 vG~eLirlL~~H~f 26 (154)
T d2gz1a1 13 VGAQMIKMLEESTL 26 (154)
T ss_dssp HHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHcCCC
Confidence 79999999999973
No 10
>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}
Probab=12.50 E-value=44 Score=22.64 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=18.5
Q ss_pred CCCCCchhHHHHHHHhhCCCc
Q 034247 27 LQFESPVGQLLAQILQTHPHL 47 (100)
Q Consensus 27 L~~eSp~GqfL~~iL~~~PhL 47 (100)
+....-.|.++..+++.+|||
T Consensus 86 lDiGGG~G~~~~~l~~~~P~l 106 (244)
T d1fp1d2 86 VDVGGGSGRNLELIISKYPLI 106 (244)
T ss_dssp EEETCTTSHHHHHHHHHCTTC
T ss_pred EEecCCCcHHHHHHHHHCCCC
Confidence 556677899999999999998
Done!