BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034248
         (100 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P10542|E1A_ADE41 Early E1A 27 kDa protein OS=Human adenovirus F serotype 41 PE=2
           SV=1
          Length = 251

 Score = 31.6 bits (70), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 4/46 (8%)

Query: 19  SSPVAPTPAMTSCRKKKKDDATFLEDL--KDHIDEFVNASMEEHKT 62
           ++PV PTP   SCR++   D   +EDL  +D  DE +N S++  K+
Sbjct: 207 TAPVRPTPCRVSCRRRPAVDC--IEDLLEEDPTDEPLNLSLKRPKS 250


>sp|Q9Y5Y6|ST14_HUMAN Suppressor of tumorigenicity 14 protein OS=Homo sapiens GN=ST14
           PE=1 SV=2
          Length = 855

 Score = 30.0 bits (66), Expect = 4.8,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 24  PTPAMTSCRK----KKKDDATFLEDLKDHIDEFVNASMEEHK-TCFSKTIKKMFGMSKVV 78
           P P   +CR     +K+       D  DH DE   +    H+ TC +K  K +F +   V
Sbjct: 452 PCPGQFTCRTGRCIRKELRCDGWADCTDHSDELNCSCDAGHQFTCKNKFCKPLFWVCDSV 511

Query: 79  AERNANTQEVESSLPLQT 96
            +   N+ E   S P QT
Sbjct: 512 NDCGDNSDEQGCSCPAQT 529


>sp|Q39224|SRG1_ARATH Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1
          Length = 358

 Score = 29.3 bits (64), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 38  DATFLEDLKDHIDEFVNASMEEHKTCFSKTIK-KMFGMSKVVAE 80
           D++FL+ +K  I +F N  MEE K  + +  + + FG + VV+E
Sbjct: 92  DSSFLDKVKSEIQDFFNLPMEEKKKFWQRPDEIEGFGQAFVVSE 135


>sp|Q9RXC9|ISPG_DEIRA 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Deinococcus
           radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 /
           LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
           GN=ispG PE=3 SV=1
          Length = 429

 Score = 28.9 bits (63), Expect = 9.7,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 7   KMETQKIQQEKQSSPVAP-TPAMTSCRKKKKDDATFLEDLKDHIDEFVNASMEEHK 61
           K+E +  QQ  QS  +    P +TSC    +  ++F + L   I +F+  SM E K
Sbjct: 292 KLEVEVAQQILQSLGLRQFLPQVTSCPGCGRTTSSFFQTLAQKIQDFIRESMPEWK 347


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.309    0.121    0.328 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,599,709
Number of Sequences: 539616
Number of extensions: 1162513
Number of successful extensions: 3707
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 3702
Number of HSP's gapped (non-prelim): 22
length of query: 100
length of database: 191,569,459
effective HSP length: 69
effective length of query: 31
effective length of database: 154,335,955
effective search space: 4784414605
effective search space used: 4784414605
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)