Query 034248
Match_columns 100
No_of_seqs 37 out of 39
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 19:34:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034248.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034248hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a1g_E Protein CASC5; cell cyc 24.7 21 0.00073 22.4 0.6 16 34-49 28-43 (53)
2 1pi1_A MOB1A; mitotic EXIT net 23.9 62 0.0021 23.6 3.1 28 47-74 134-164 (185)
3 1uz3_A EMSY protein; chromatin 23.4 81 0.0028 21.6 3.4 27 43-69 48-74 (102)
4 1wy3_A Villin; structural prot 18.4 40 0.0014 19.0 0.8 10 68-77 6-15 (35)
5 1und_A Advillin, P92; actin bi 18.0 41 0.0014 19.1 0.8 10 68-77 8-17 (37)
6 2xqo_A Cellulosome enzyme, doc 16.3 78 0.0027 24.7 2.3 9 91-99 113-121 (243)
7 2hjn_A MPS1 binder 1, maintena 14.6 1.1E+02 0.0036 23.4 2.6 28 47-74 187-217 (236)
8 3vu7_H DNA repair protein REV1 13.7 86 0.003 21.6 1.8 32 40-71 36-70 (124)
9 2elu_A Zinc finger protein 406 13.0 1.7E+02 0.0058 17.0 2.6 23 25-51 9-31 (37)
10 3go5_A Multidomain protein wit 12.8 70 0.0024 24.3 1.2 15 67-81 250-264 (285)
No 1
>4a1g_E Protein CASC5; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens}
Probab=24.66 E-value=21 Score=22.39 Aligned_cols=16 Identities=44% Similarity=0.621 Sum_probs=13.3
Q ss_pred ccCCCchhhHHHHHHH
Q 034248 34 KKKDDATFLEDLKDHI 49 (100)
Q Consensus 34 ~~~e~aTF~e~lKDh~ 49 (100)
.+-|-++||++||.|-
T Consensus 28 ~KIDttSFLanLk~h~ 43 (53)
T 4a1g_E 28 TKIDTTSFLANLKLHT 43 (53)
T ss_pred eeccHHHHHHHHHhhc
Confidence 4567889999999985
No 2
>1pi1_A MOB1A; mitotic EXIT network, mitosis, DBF2, cell cycle; 2.00A {Homo sapiens} SCOP: a.29.7.1 PDB: 1r3b_A
Probab=23.94 E-value=62 Score=23.57 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=21.7
Q ss_pred HHHHHHhhcChHHHH-hHHHHHHH--HHhch
Q 034248 47 DHIDEFVNASMEEHK-TCFSKTIK--KMFGM 74 (100)
Q Consensus 47 Dh~~EFi~As~dEHk-tCfknti~--kmFG~ 74 (100)
.||+.|.+....-|. +||+.-+- +.|++
T Consensus 134 ~Hf~~~~~l~~e~hlNt~f~hF~~F~~ef~L 164 (185)
T 1pi1_A 134 QHFDSVMQLQEEAHLNTSFKHFIFFVQEFNL 164 (185)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCcceehhhHHHHHHHHHHhCC
Confidence 489999999999999 67876443 55654
No 3
>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A
Probab=23.36 E-value=81 Score=21.65 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhhcChHHHHhHHHHHHH
Q 034248 43 EDLKDHIDEFVNASMEEHKTCFSKTIK 69 (100)
Q Consensus 43 e~lKDh~~EFi~As~dEHktCfknti~ 69 (100)
|.|-.+++...|+|-|||+..+++-+.
T Consensus 48 e~LLt~LR~~L~IS~eeH~~elrr~~s 74 (102)
T 1uz3_A 48 KDLLGELSKVLSISTERHRAEVRRAVN 74 (102)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHhcc
Confidence 556667778889999999999887654
No 4
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=18.40 E-value=40 Score=19.01 Aligned_cols=10 Identities=40% Similarity=0.883 Sum_probs=8.1
Q ss_pred HHHHhchhhH
Q 034248 68 IKKMFGMSKV 77 (100)
Q Consensus 68 i~kmFG~sK~ 77 (100)
+.++|||++.
T Consensus 6 F~~vFgmsr~ 15 (35)
T 1wy3_A 6 FKAVFGMTRS 15 (35)
T ss_dssp HHHHHSSCHH
T ss_pred HHHHHCCCHH
Confidence 5789999875
No 5
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=18.01 E-value=41 Score=19.13 Aligned_cols=10 Identities=20% Similarity=0.600 Sum_probs=8.2
Q ss_pred HHHHhchhhH
Q 034248 68 IKKMFGMSKV 77 (100)
Q Consensus 68 i~kmFG~sK~ 77 (100)
+.++|||++.
T Consensus 8 F~~vFgmsr~ 17 (37)
T 1und_A 8 FVSVFGITRG 17 (37)
T ss_dssp HHHHHSSCHH
T ss_pred HHHHHCcCHH
Confidence 6789999875
No 6
>2xqo_A Cellulosome enzyme, dockerin type I; hydrolase; HET: MSE CTR; 1.40A {Clostridium thermocellum}
Probab=16.26 E-value=78 Score=24.73 Aligned_cols=9 Identities=44% Similarity=0.335 Sum_probs=7.1
Q ss_pred ccccccccc
Q 034248 91 SLPLQTTIS 99 (100)
Q Consensus 91 ~lpLqttv~ 99 (100)
+=||||.++
T Consensus 113 yGplQTAeT 121 (243)
T 2xqo_A 113 FGPLQTAET 121 (243)
T ss_dssp ETTTTEEGG
T ss_pred ccchHHHHH
Confidence 569999875
No 7
>2hjn_A MPS1 binder 1, maintenance of ploidy protein MOB1; homodimer, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=14.58 E-value=1.1e+02 Score=23.44 Aligned_cols=28 Identities=18% Similarity=0.379 Sum_probs=21.1
Q ss_pred HHHHHHhhcChHHHH-hHHHHHH--HHHhch
Q 034248 47 DHIDEFVNASMEEHK-TCFSKTI--KKMFGM 74 (100)
Q Consensus 47 Dh~~EFi~As~dEHk-tCfknti--~kmFG~ 74 (100)
.||+.|.+.....|. +|||.-+ -+.|++
T Consensus 187 ~Hf~~~~~l~~e~hLNt~FkHF~~F~~ef~L 217 (236)
T 2hjn_A 187 HHFNEILELNLQTVLNTSFRHFCLFAQEFEL 217 (236)
T ss_dssp HSHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcccchhhhhhHHHHHHHHHHhcC
Confidence 489999999999998 5677643 356654
No 8
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=13.74 E-value=86 Score=21.56 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=24.5
Q ss_pred hhhHHHHHHHHHHhh---cChHHHHhHHHHHHHHH
Q 034248 40 TFLEDLKDHIDEFVN---ASMEEHKTCFSKTIKKM 71 (100)
Q Consensus 40 TF~e~lKDh~~EFi~---As~dEHktCfknti~km 71 (100)
|=+.++|+.+.+++. .|.++.=..|.+++.++
T Consensus 36 t~l~evK~lL~~Wv~s~~~P~~~DV~~l~~yL~~l 70 (124)
T 3vu7_H 36 VEFNDVKTLLREWITTISDPMEEDILQVVKYCTDL 70 (124)
T ss_dssp CSHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 567999999999986 45666677777777654
No 9
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=13.04 E-value=1.7e+02 Score=16.97 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=15.8
Q ss_pred CcccchhhhccCCCchhhHHHHHHHHH
Q 034248 25 TPAMTSCRKKKKDDATFLEDLKDHIDE 51 (100)
Q Consensus 25 ~~a~sscRk~~~e~aTF~e~lKDh~~E 51 (100)
+.---+|+|+-+| |.+|-.||+|
T Consensus 9 kqhcrfckkkysd----vknlikhire 31 (37)
T 2elu_A 9 KQHCRFCKKKYSD----VKNLIKHIRD 31 (37)
T ss_dssp CCEETTTTEECSS----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHH
Confidence 3445678888775 4677778876
No 10
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=12.82 E-value=70 Score=24.30 Aligned_cols=15 Identities=40% Similarity=0.545 Sum_probs=12.3
Q ss_pred HHHHHhchhhHhhhh
Q 034248 67 TIKKMFGMSKVVAER 81 (100)
Q Consensus 67 ti~kmFG~sK~vae~ 81 (100)
.|++.|||||..=.|
T Consensus 250 ~I~~~f~~SK~~FKr 264 (285)
T 3go5_A 250 DIKATFGISKGQFKK 264 (285)
T ss_dssp HHHHHHSSCHHHHHH
T ss_pred HHHHHhCcCHHHHHH
Confidence 589999999976555
Done!