Query 034248
Match_columns 100
No_of_seqs 37 out of 39
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 19:34:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034248.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034248hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pi1a_ a.29.7.1 (A:) Mob1a {H 43.7 8.7 0.00063 26.6 3.1 28 47-74 134-164 (185)
2 d1y6da_ a.24.10.5 (A:) Phospho 24.6 47 0.0034 19.0 3.8 39 40-78 29-67 (114)
3 d1bnba_ g.9.1.1 (A:) Beta-defe 19.8 9.7 0.0007 21.2 -0.2 10 25-34 29-38 (38)
4 d1n1ja_ a.22.1.3 (A:) Nuclear 19.7 32 0.0023 20.0 2.3 18 37-54 70-87 (87)
5 d1yu8x1 a.14.1.1 (X:42-76) Vil 19.5 17 0.0012 19.3 0.8 11 67-77 5-15 (35)
6 d3b7sa3 d.92.1.13 (A:209-460) 18.2 37 0.0027 21.9 2.5 37 33-69 187-225 (252)
7 d1bl0a1 a.4.1.8 (A:9-62) MarA 17.9 34 0.0025 17.7 1.9 37 39-75 2-47 (54)
8 d1e0ea_ a.4.10.1 (A:) N-termin 17.8 25 0.0018 19.5 1.4 24 58-81 10-35 (46)
9 d1unda_ a.14.1.1 (A:) Advillin 16.9 21 0.0015 19.0 0.8 11 67-77 6-16 (36)
10 d1q23a_ c.43.1.1 (A:) Chloramp 14.6 25 0.0018 23.4 0.9 17 38-54 197-213 (214)
No 1
>d1pi1a_ a.29.7.1 (A:) Mob1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.66 E-value=8.7 Score=26.58 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=22.9
Q ss_pred HHHHHHhhcChHHHH-hHHHH--HHHHHhch
Q 034248 47 DHIDEFVNASMEEHK-TCFSK--TIKKMFGM 74 (100)
Q Consensus 47 Dh~~EFi~As~dEHk-tCfkn--ti~kmFG~ 74 (100)
-||+.|.+.....|. +||+. .+-+.|++
T Consensus 134 ~Hf~~~~~l~~e~hlNt~FkHF~~f~~ef~L 164 (185)
T d1pi1a_ 134 QHFDSVMQLQEEAHLNTSFKHFIFFVQEFNL 164 (185)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHhCC
Confidence 489999999999999 88887 44477765
No 2
>d1y6da_ a.24.10.5 (A:) Phosphorelay protein luxU {Vibrio harveyi [TaxId: 669]}
Probab=24.58 E-value=47 Score=19.04 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=30.9
Q ss_pred hhhHHHHHHHHHHhhcChHHHHhHHHHHHHHHhchhhHh
Q 034248 40 TFLEDLKDHIDEFVNASMEEHKTCFSKTIKKMFGMSKVV 78 (100)
Q Consensus 40 TF~e~lKDh~~EFi~As~dEHktCfknti~kmFG~sK~v 78 (100)
.|++++.+.+.+...+-...-+.=+.....++=|.+-.+
T Consensus 29 ~F~~~~~~~~~~L~~a~~~~d~~~l~~~aH~LKGsa~~~ 67 (114)
T d1y6da_ 29 IFLGEMDSYIGTLTELQGSEQLLYLKEISHALKSSAASF 67 (114)
T ss_dssp HHHHHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHc
Confidence 699999999999999988888888888777665554433
No 3
>d1bnba_ g.9.1.1 (A:) Beta-defensin, BD {Cow (Bos taurus), BD12 [TaxId: 9913]}
Probab=19.83 E-value=9.7 Score=21.16 Aligned_cols=10 Identities=20% Similarity=0.431 Sum_probs=7.7
Q ss_pred Ccccchhhhc
Q 034248 25 TPAMTSCRKK 34 (100)
Q Consensus 25 ~~a~sscRk~ 34 (100)
.|.+.|||++
T Consensus 29 g~~VkCCR~w 38 (38)
T d1bnba_ 29 GRPVKCCRSW 38 (38)
T ss_dssp TTTEEEEECC
T ss_pred CCccchhcCC
Confidence 3678899985
No 4
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.68 E-value=32 Score=20.03 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=15.1
Q ss_pred CCchhhHHHHHHHHHHhh
Q 034248 37 DDATFLEDLKDHIDEFVN 54 (100)
Q Consensus 37 e~aTF~e~lKDh~~EFi~ 54 (100)
+-..|++.|+.|.++|++
T Consensus 70 ~~~~fl~~l~~~~~~~ke 87 (87)
T d1n1ja_ 70 GFDSYVEPLKLYLQKFRE 87 (87)
T ss_dssp TCGGGHHHHHHHHHHHHC
T ss_pred CcHhHHHHHHHHHHHhcC
Confidence 456899999999999863
No 5
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=19.52 E-value=17 Score=19.31 Aligned_cols=11 Identities=36% Similarity=0.803 Sum_probs=8.6
Q ss_pred HHHHHhchhhH
Q 034248 67 TIKKMFGMSKV 77 (100)
Q Consensus 67 ti~kmFG~sK~ 77 (100)
-++++|||++.
T Consensus 5 dF~~vfgmsr~ 15 (35)
T d1yu8x1 5 DFKAVFGMTRS 15 (35)
T ss_dssp HHHHHHSSCHH
T ss_pred HHHHHHCCCHH
Confidence 36789999875
No 6
>d3b7sa3 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.15 E-value=37 Score=21.88 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=27.7
Q ss_pred hccCCCchhhHHHHHHHHHH--hhcChHHHHhHHHHHHH
Q 034248 33 KKKKDDATFLEDLKDHIDEF--VNASMEEHKTCFSKTIK 69 (100)
Q Consensus 33 k~~~e~aTF~e~lKDh~~EF--i~As~dEHktCfknti~ 69 (100)
+..+++..|.+-||+++..| .+++.++=+.++.+...
T Consensus 187 ~~iG~~~~f~~~lr~yl~~~~~~~~~~~df~~~l~~~~~ 225 (252)
T d3b7sa3 187 QLLGGPEIFLGFLKAYVEKFSYKSITTDDWKDFLYSYFK 225 (252)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTEEECHHHHHHHHHHHTG
T ss_pred HHhccHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Confidence 35787888999999999875 67888886666655443
No 7
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=17.87 E-value=34 Score=17.67 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=18.0
Q ss_pred chhhHHHHHHHHHHhhcChHH---------HHhHHHHHHHHHhchh
Q 034248 39 ATFLEDLKDHIDEFVNASMEE---------HKTCFSKTIKKMFGMS 75 (100)
Q Consensus 39 aTF~e~lKDh~~EFi~As~dE---------HktCfknti~kmFG~s 75 (100)
+..++.+.++|++=++-+-+= ...=|...+++.+|++
T Consensus 2 ~~~i~~v~~yI~~~~~~~~tl~~lA~~~~~s~~~l~r~Fk~~~g~t 47 (54)
T d1bl0a1 2 AITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHS 47 (54)
T ss_dssp HHHHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 445666666665443322111 1222455566666664
No 8
>d1e0ea_ a.4.10.1 (A:) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=17.77 E-value=25 Score=19.47 Aligned_cols=24 Identities=38% Similarity=0.668 Sum_probs=16.6
Q ss_pred HHHHhHHH--HHHHHHhchhhHhhhh
Q 034248 58 EEHKTCFS--KTIKKMFGMSKVVAER 81 (100)
Q Consensus 58 dEHktCfk--nti~kmFG~sK~vae~ 81 (100)
+||...-. +++...||.++.||..
T Consensus 10 e~H~k~H~N~~~L~~~F~lp~~vAr~ 35 (46)
T d1e0ea_ 10 EEHEKYHSNVKELSHKFGIPNLVARQ 35 (46)
T ss_dssp HHHHHHCCCHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHccCHHHHHHHcCCCHHHHHH
Confidence 44443332 4678999999999964
No 9
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.89 E-value=21 Score=19.00 Aligned_cols=11 Identities=18% Similarity=0.546 Sum_probs=8.5
Q ss_pred HHHHHhchhhH
Q 034248 67 TIKKMFGMSKV 77 (100)
Q Consensus 67 ti~kmFG~sK~ 77 (100)
-+.++||||+.
T Consensus 6 dF~~vFgmsr~ 16 (36)
T d1unda_ 6 DFVSVFGITRG 16 (36)
T ss_dssp HHHHHHSSCHH
T ss_pred HHHHHHCcCHH
Confidence 36789999875
No 10
>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}
Probab=14.58 E-value=25 Score=23.45 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=14.3
Q ss_pred CchhhHHHHHHHHHHhh
Q 034248 38 DATFLEDLKDHIDEFVN 54 (100)
Q Consensus 38 ~aTF~e~lKDh~~EFi~ 54 (100)
-|.|+++|++.++||.+
T Consensus 197 ~a~Fl~~lq~~le~~~~ 213 (214)
T d1q23a_ 197 VGRMLNELQQYCDEWQG 213 (214)
T ss_dssp HHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhhccC
Confidence 46799999999999853
Done!