BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034252
(100 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0CM86|COX19_CRYNJ Cytochrome c oxidase assembly protein COX19 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=COX19 PE=3 SV=1
Length = 115
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Query: 14 RPVPPEKGVFPLDHMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRMAKNLMAKQD 73
+P PP +G FPLDH +C Y+ C+K + + + CR+FSK+YLECRM K LMA+ D
Sbjct: 13 KPSPPARGSFPLDHDGECKAFMISYLKCMKENANDNGKCRLFSKQYLECRMDKGLMARDD 72
Query: 74 LSELGFRNEGDLENP 88
++ LG GD+ +P
Sbjct: 73 MANLGL---GDVVDP 84
>sp|P0CM87|COX19_CRYNB Cytochrome c oxidase assembly protein COX19 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=COX19 PE=3 SV=1
Length = 115
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Query: 14 RPVPPEKGVFPLDHMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRMAKNLMAKQD 73
+P PP +G FPLDH +C Y+ C+K + + + CR+FSK+YLECRM K LMA+ D
Sbjct: 13 KPSPPARGSFPLDHDGECKAFMISYLKCMKENANDNGKCRLFSKQYLECRMDKGLMARDD 72
Query: 74 LSELGFRNEGDLENP 88
++ LG GD+ +P
Sbjct: 73 MANLGL---GDVVDP 84
>sp|A8E4L1|COX19_BOVIN Cytochrome c oxidase assembly protein COX19 OS=Bos taurus
GN=COX19 PE=2 SV=1
Length = 89
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 59/93 (63%), Gaps = 4/93 (4%)
Query: 1 MSAGGAFGGNRGARPVPPEKGVFPLDHMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYL 60
MS FG ++ +P PP+KG FPLDH +C K+ ++ CL+ + ++ CR SK+YL
Sbjct: 1 MSTAMNFG-SKSFQPRPPDKGSFPLDHFGECKSFKEKFMKCLRDNNFENALCRNESKEYL 59
Query: 61 ECRMAKNLMAKQDLSELGFRNEGDLENPREENN 93
ECRM + LMA++ L +LGF GDL + + + N
Sbjct: 60 ECRMERQLMAQEPLEKLGF---GDLIDGKSDKN 89
>sp|O14056|COX19_SCHPO Cytochrome c oxidase assembly protein cox19, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cox19 PE=3 SV=2
Length = 112
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 6 AFGGNRGARPV----PPEKGVFPLDHMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLE 61
+FG G+ P+ PPE+G FPLDH +C K Y+ C+K E CR+ +KKYL+
Sbjct: 2 SFGAAGGSLPMTTREPPERGSFPLDHFGECTHVMKQYLECIKVKRENQEECRLLAKKYLQ 61
Query: 62 CRMAKNLMAKQDLSELGFRNE 82
CRM L K D+ LGF +
Sbjct: 62 CRMDTGLFGKDDMKNLGFHGD 82
>sp|Q5AL10|COX19_CANAL Cytochrome c oxidase assembly protein COX19 OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=COX19 PE=3 SV=1
Length = 133
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 7 FGGN-RGARPVPPEKGVFPLDHMHQCDLEKKDYIGCLK-SSGHQSENCRIFSKKYLECRM 64
GGN R P PPE+G FPLDH +C Y+ C+K + + NCRI +K+YL+CRM
Sbjct: 7 IGGNFRTWTPTPPERGSFPLDHDGECKEYMTKYLTCMKFTENKNAPNCRILAKQYLKCRM 66
Query: 65 AKNLMAKQDLSELGFRN---EGDLE 86
LM K D LG N E D+E
Sbjct: 67 DNQLMEKSDWDSLGLVNLPGENDVE 91
>sp|Q8K0C8|COX19_MOUSE Cytochrome c oxidase assembly protein COX19 OS=Mus musculus
GN=Cox19 PE=3 SV=1
Length = 92
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 1 MSAGGAFGGNRGARPVPPEKGVFPLDHMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYL 60
MS FG + +P PP+KG FPLDH +C K+ ++ CL+ +++ CR SK+YL
Sbjct: 1 MSTAMNFG-TKSFQPRPPDKGSFPLDHFGECKSFKEKFMRCLRDKNYENALCRNESKEYL 59
Query: 61 ECRMAKNLMAKQDLSELGFRN 81
CRM + LMA + L +LGFR+
Sbjct: 60 MCRMQRQLMAPEPLEKLGFRD 80
>sp|Q49B96|COX19_HUMAN Cytochrome c oxidase assembly protein COX19 OS=Homo sapiens
GN=COX19 PE=1 SV=1
Length = 90
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 57/91 (62%), Gaps = 4/91 (4%)
Query: 1 MSAGGAFGGNRGARPVPPEKGVFPLDHMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYL 60
MS FG + +P PP+KG FPLDH+ +C K+ ++ CL ++ ++ CR SK+YL
Sbjct: 1 MSTAMNFG-TKSFQPRPPDKGSFPLDHLGECKSFKEKFMKCLHNNNFENALCRKESKEYL 59
Query: 61 ECRMAKNLMAKQDLSELGFRNEGDLENPREE 91
ECRM + LM ++ L +LGF GDL + + E
Sbjct: 60 ECRMERKLMLQEPLEKLGF---GDLTSGKSE 87
>sp|Q54IA0|COX19_DICDI Cytochrome c oxidase assembly protein COX19 OS=Dictyostelium
discoideum GN=cox19 PE=3 SV=1
Length = 106
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 41/66 (62%)
Query: 14 RPVPPEKGVFPLDHMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRMAKNLMAKQD 73
+P PP+KG FPLDH +C Y+ CL + S C FSK+YL+CRM NLMAK+D
Sbjct: 11 KPTPPDKGSFPLDHDSECSKPMLAYVNCLSENNGLSRFCMEFSKEYLKCRMDNNLMAKED 70
Query: 74 LSELGF 79
+ GF
Sbjct: 71 MDNFGF 76
>sp|Q6FVQ3|COX19_CANGA Cytochrome c oxidase assembly protein COX19 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=COX19 PE=3 SV=1
Length = 86
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 1 MSAGGAFGGNRGARPVPPEKGVFPLDHMHQCDLEKKDYIGCLKSSGHQ-SENCRIFSKKY 59
MS+G G R P PPE+G FPLDH +C + Y+ C++ + ++ + NCR+ +K Y
Sbjct: 1 MSSGNPGGALRALSPTPPERGSFPLDHDGECAEYMQKYLQCMRLAANENAHNCRLLAKDY 60
Query: 60 LECRMAKNLMAKQDLSELGF 79
L+CRM LM K + LG
Sbjct: 61 LKCRMDHQLMDKDEWKNLGL 80
>sp|Q6CS47|COX19_KLULA Cytochrome c oxidase assembly protein COX19 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=COX19 PE=3 SV=1
Length = 99
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 11 RGARPVPPEKGVFPLDHMHQCDLEKKDYIGCLK-SSGHQSENCRIFSKKYLECRMAKNLM 69
+ P PPE+G FPLDH C + ++Y+ C+K G + NCR+ +K+YL+CRM LM
Sbjct: 10 KALSPTPPERGSFPLDHDGDCTKQMQEYLSCIKLVKGENAPNCRLLAKEYLKCRMDNKLM 69
Query: 70 AKQDLSELGF 79
+ D LG
Sbjct: 70 DRDDWKHLGL 79
>sp|Q462Q7|COX19_PARBR Cytochrome c oxidase assembly protein COX19 OS=Paracoccidioides
brasiliensis GN=COX19 PE=3 SV=1
Length = 107
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Query: 1 MSAGGAFGGNRGARPVPPEKGVFPLDHMHQCDLEKKDYIGCLKS-SGHQSENCRIFSKKY 59
MS G G + +P PPE+G FPLDH +C Y+ CLK G E CR +K Y
Sbjct: 1 MSFGSPGGRSVNIKPKPPERGSFPLDHDGECKFIISSYLQCLKKGGGVNDETCRKLAKSY 60
Query: 60 LECRMAKNLMAKQDLSELGFRNEGDLENPREENNGRIENGS 100
L CRM NLMA + LG + D + REE + S
Sbjct: 61 LSCRMDHNLMAPECFENLGLVFDED-KKKREEASASTTAAS 100
>sp|Q4P821|COX19_USTMA Cytochrome c oxidase assembly protein COX19 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=COX19 PE=3 SV=1
Length = 197
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%)
Query: 17 PPEKGVFPLDHMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRMAKNLMAKQDLSE 76
PPE+G FPLDH +C ++Y+ C+K + + + CR S+ YL+CRM K LM + ++
Sbjct: 16 PPERGSFPLDHDGECKSVMQEYMNCIKYNRNDNGKCRHLSRAYLQCRMDKGLMEQDNMDN 75
Query: 77 LGFRNEGDLENPREEN 92
LGF++ D + +N
Sbjct: 76 LGFKDVVDPASTETKN 91
>sp|Q75AF9|COX19_ASHGO Cytochrome c oxidase assembly protein COX19 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=COX19 PE=3 SV=2
Length = 99
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 15 PVPPEKGVFPLDHMHQCDLEKKDYIGCLK-SSGHQSENCRIFSKKYLECRMAKNLMAKQD 73
P PPE+G FPLDH +C + +Y+ C+K G + NCR+ ++ YL+CRM LM + +
Sbjct: 14 PTPPERGSFPLDHEGECTAQMMEYLNCMKLVRGENAPNCRLLARNYLKCRMDHRLMDRDE 73
Query: 74 LSELGFRNE 82
+ LG ++
Sbjct: 74 WAHLGLPDD 82
>sp|Q3E731|COX19_YEAST Cytochrome c oxidase assembly protein COX19 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=COX19 PE=1
SV=1
Length = 98
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 7 FGGNRGA-----RPVPPEKGVFPLDHMHQCDLEKKDYIGCLK-SSGHQSENCRIFSKKYL 60
GN G+ RP PPE+G FPLDH +C ++Y+ C++ + NCR+ +K YL
Sbjct: 1 MSGNPGSSLSALRPTPPERGSFPLDHDGECTKYMQEYLKCMQLVQNENAMNCRLLAKDYL 60
Query: 61 ECRMAKNLMAKQDLSELGF 79
CRM LM + S LG
Sbjct: 61 RCRMDHQLMDYDEWSHLGL 79
>sp|A9CSU5|SYQ_ENTBH Probable glutamine--tRNA ligase OS=Enterocytozoon bieneusi (strain
H348) GN=EBI_22570 PE=3 SV=1
Length = 691
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 60 LECRMAKNLMAKQDLSELGFRNEGDLENPREENNGRIEN 98
+E RM K L D E+G+ N+ DL N E +G ++N
Sbjct: 607 VELRMYKPLFKSFDPDEIGYMNDIDLTNSLEIIDGYVDN 645
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,207,106
Number of Sequences: 539616
Number of extensions: 1514991
Number of successful extensions: 2104
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2081
Number of HSP's gapped (non-prelim): 17
length of query: 100
length of database: 191,569,459
effective HSP length: 69
effective length of query: 31
effective length of database: 154,335,955
effective search space: 4784414605
effective search space used: 4784414605
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)