Query 034252
Match_columns 100
No_of_seqs 103 out of 156
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 19:39:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034252.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034252hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ei0_A P8MTCP1; helix-turn-hel 95.4 0.019 6.6E-07 33.1 3.7 34 30-63 2-35 (38)
2 2lql_A Coiled-coil-helix-coile 95.0 0.011 3.6E-07 41.0 2.1 38 29-66 59-96 (113)
3 1hp8_A HU-P8; leukemia, cystei 94.7 0.028 9.7E-07 36.4 3.4 36 29-64 5-40 (68)
4 2lqt_A Coiled-coil-helix-coile 87.3 0.62 2.1E-05 31.4 3.6 35 29-63 14-48 (85)
5 2lql_A Coiled-coil-helix-coile 80.2 0.6 2.1E-05 32.1 1.2 43 25-67 8-52 (113)
6 1u96_A Cytochrome C oxidase co 63.9 5.1 0.00017 26.0 2.6 44 27-81 22-65 (69)
7 1u96_A Cytochrome C oxidase co 60.6 13 0.00045 24.0 4.2 21 29-49 45-65 (69)
8 1v54_H AED, cytochrome C oxida 49.2 24 0.00084 23.0 4.1 45 17-61 14-62 (85)
9 1cks_A Cyclin-dependent kinase 43.0 6.3 0.00022 26.1 0.5 22 66-87 35-56 (79)
10 1puc_A P13SUC1, P13; cell cycl 31.2 16 0.00053 25.3 0.9 21 67-87 63-83 (105)
11 3qy2_A Cyclin-dependent kinase 27.1 17 0.00059 25.6 0.6 20 67-86 67-86 (117)
12 1pp9_H Ubiquinol-cytochrome C 25.3 55 0.0019 21.1 2.7 35 29-63 28-65 (78)
13 1ejp_A Syndecan-4; symmetric-p 25.0 27 0.00091 19.1 1.0 10 18-27 5-14 (28)
14 1qb3_A Cyclin-dependent kinase 24.6 23 0.00077 25.9 0.8 20 67-86 67-86 (150)
15 2l0y_B HCG2020266, COX17 cytoc 24.0 16 0.00055 23.5 -0.0 19 28-46 46-64 (67)
16 4dox_A Coat protein; all helix 23.6 38 0.0013 25.9 2.0 48 35-84 89-137 (226)
17 3idw_A Actin cytoskeleton-regu 20.6 40 0.0014 21.8 1.3 36 46-81 13-51 (72)
No 1
>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1
Probab=95.40 E-value=0.019 Score=33.08 Aligned_cols=34 Identities=15% Similarity=0.491 Sum_probs=31.2
Q ss_pred cchHHHHHHHHHHHhcCCCChhHHHHHHHHhhcc
Q 034252 30 QCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECR 63 (100)
Q Consensus 30 eCk~~m~~Yl~CLk~~~~~~~~CR~lak~YL~CR 63 (100)
-|+.+...+..||.+|+++-++|..+...|=+|-
T Consensus 2 pC~~~a~a~q~CL~~n~~d~skCq~~id~l~~Cc 35 (38)
T 1ei0_A 2 PCQKQAAEIQKCLQANSYLESKCQAVIQELKKCA 35 (38)
T ss_dssp CSHHHHHHHHHHHHHTTTCGGGTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 3889999999999999999999999999888874
No 2
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=95.02 E-value=0.011 Score=41.01 Aligned_cols=38 Identities=18% Similarity=0.516 Sum_probs=34.2
Q ss_pred ccchHHHHHHHHHHHhcCCCChhHHHHHHHHhhccccc
Q 034252 29 HQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRMAK 66 (100)
Q Consensus 29 geCk~~m~~Yl~CLk~~~~~~~~CR~lak~YL~CRMd~ 66 (100)
..|...+..|-.||+.|..+-..||..-+.+.+|-=+.
T Consensus 59 ~~C~~ef~~y~~CL~~n~~~~~~Cr~~~~~f~~Cae~v 96 (113)
T 2lql_A 59 QACAQPFEAFEECLRQNEAAVGNCAEHMRRFLQCAEQV 96 (113)
T ss_dssp HHTHHHHHHHHHHHHHCTTCTTTCCSHHHHHHHHHTTC
T ss_pred HHhHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHh
Confidence 46999999999999999999999999999999997433
No 3
>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A
Probab=94.71 E-value=0.028 Score=36.44 Aligned_cols=36 Identities=14% Similarity=0.429 Sum_probs=33.8
Q ss_pred ccchHHHHHHHHHHHhcCCCChhHHHHHHHHhhccc
Q 034252 29 HQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRM 64 (100)
Q Consensus 29 geCk~~m~~Yl~CLk~~~~~~~~CR~lak~YL~CRM 64 (100)
.-|+.+...+..||.+|+++-++|..+-..|=+|+-
T Consensus 5 dPC~~~AcaiQ~CL~~N~yd~skCq~~id~L~eCc~ 40 (68)
T 1hp8_A 5 DPCQKQACEIQKCLQANSYMESKCQAVIQELRKCCA 40 (68)
T ss_dssp CTTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 459999999999999999999999999999999985
No 4
>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}
Probab=87.27 E-value=0.62 Score=31.35 Aligned_cols=35 Identities=26% Similarity=0.601 Sum_probs=32.7
Q ss_pred ccchHHHHHHHHHHHhcCCCChhHHHHHHHHhhcc
Q 034252 29 HQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECR 63 (100)
Q Consensus 29 geCk~~m~~Yl~CLk~~~~~~~~CR~lak~YL~CR 63 (100)
.-|.++...-++||.+|+.+-..|..+=.+|=.|+
T Consensus 14 nPC~~e~~~S~kCL~~n~yDr~~C~~yF~~Yk~CK 48 (85)
T 2lqt_A 14 NPCLSESDASTRCLDENNYDRERCSTYFLRYKNCR 48 (85)
T ss_dssp CCCHHHHHHHHHHHHHTTTCTTTTHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence 45999999999999999999999999999999995
No 5
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=80.22 E-value=0.6 Score=32.07 Aligned_cols=43 Identities=16% Similarity=0.404 Sum_probs=29.7
Q ss_pred CCCcc-cchHHHHHHHHHHHhcC-CCChhHHHHHHHHhhcccccC
Q 034252 25 LDHMH-QCDLEKKDYIGCLKSSG-HQSENCRIFSKKYLECRMAKN 67 (100)
Q Consensus 25 LDH~g-eCk~~m~~Yl~CLk~~~-~~~~~CR~lak~YL~CRMd~~ 67 (100)
++|-+ .|...+..|+.|..++. .+...|..+.++==.|-.++.
T Consensus 8 ~~~vak~C~~~~~~f~~C~~~~~~~dp~~Cl~eg~~vt~Ca~~~p 52 (113)
T 2lql_A 8 LEVTARYCGRELEQYGQCVAAKPESWQRDCHYLKMSIAQCTSSHP 52 (113)
T ss_dssp ------CCHHHHHHHHHHHHHCTTHHHHTCSHHHHHHHHHHHTCC
T ss_pred HHHHHHHccHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhccH
Confidence 45666 59999999999999884 456678888887777755443
No 6
>1u96_A Cytochrome C oxidase copper chaperone; metallochaperone, unstructured N-terminus, two alpha- helices; NMR {Saccharomyces cerevisiae} SCOP: a.17.1.2 PDB: 1u97_A 1z2g_A
Probab=63.92 E-value=5.1 Score=26.01 Aligned_cols=44 Identities=34% Similarity=0.684 Sum_probs=35.5
Q ss_pred CcccchHHHHHHHHHHHhcCCCChhHHHHHHHHhhcccccCCCCccccccCCCCC
Q 034252 27 HMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRMAKNLMAKQDLSELGFRN 81 (100)
Q Consensus 27 H~geCk~~m~~Yl~CLk~~~~~~~~CR~lak~YL~CRMd~~LMakdd~~~LGf~~ 81 (100)
-==-|......==.|+-.++.++..|..+...|.+| +..+||.-
T Consensus 22 pCCaCpetK~aRDeCil~~gee~~~C~~lIeahk~C-----------Mr~~GF~v 65 (69)
T 1u96_A 22 PCCVCKPEKEERDTCILFNGQDSEKCKEFIEKYKEC-----------MKGYGFEV 65 (69)
T ss_dssp CCTTSSHHHHHHHHHHHHSCSCSGGGHHHHHHHHHH-----------HHTTTCCC
T ss_pred cCeeCcchhhHHHHHHHhcCCcHHHHHHHHHHHHHH-----------HHHcCCCC
Confidence 344678888888889999988888999999999988 56677753
No 7
>1u96_A Cytochrome C oxidase copper chaperone; metallochaperone, unstructured N-terminus, two alpha- helices; NMR {Saccharomyces cerevisiae} SCOP: a.17.1.2 PDB: 1u97_A 1z2g_A
Probab=60.56 E-value=13 Score=24.00 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=18.4
Q ss_pred ccchHHHHHHHHHHHhcCCCC
Q 034252 29 HQCDLEKKDYIGCLKSSGHQS 49 (100)
Q Consensus 29 geCk~~m~~Yl~CLk~~~~~~ 49 (100)
..|+..+..|.+||+..+.+-
T Consensus 45 ~~C~~lIeahk~CMr~~GF~v 65 (69)
T 1u96_A 45 EKCKEFIEKYKECMKGYGFEV 65 (69)
T ss_dssp GGGHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHHHHcCCCC
Confidence 489999999999999987653
No 8
>1v54_H AED, cytochrome C oxidase polypeptide VIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.51.1.1 PDB: 1oco_H* 1occ_H* 1ocz_H* 1ocr_H* 1v55_H* 2dyr_H* 2dys_H* 2eij_H* 2eik_H* 2eil_H* 2eim_H* 2ein_H* 2occ_H* 2ybb_S* 2zxw_H* 3abk_H* 3abl_H* 3abm_H* 3ag1_H* 3ag2_H* ...
Probab=49.21 E-value=24 Score=22.98 Aligned_cols=45 Identities=22% Similarity=0.491 Sum_probs=34.7
Q ss_pred CCCCCCCC-CCCcccchHHHHHHHHHHHh---cCCCChhHHHHHHHHhh
Q 034252 17 PPEKGVFP-LDHMHQCDLEKKDYIGCLKS---SGHQSENCRIFSKKYLE 61 (100)
Q Consensus 17 pPerGSFP-LDH~geCk~~m~~Yl~CLk~---~~~~~~~CR~lak~YL~ 61 (100)
+|--=.|| -.---.|=..-..|..|++. ++.+...|..+-+.|-+
T Consensus 14 ap~D~rFPn~nq~k~Cw~~y~df~~C~~~l~~~ged~~~C~~~~~~y~s 62 (85)
T 1v54_H 14 APFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKS 62 (85)
T ss_dssp CCCCTTSCSSBCHHHHHHHHHHHHHHHHHHHHHTCCGGGGHHHHHHHHH
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 44444577 34456788889999999665 89999999999999854
No 9
>1cks_A Cyclin-dependent kinase subunit, type 2; cell division; 2.10A {Homo sapiens} SCOP: d.97.1.1 PDB: 1buh_B 1dks_A 1dkt_A* 2ast_C* 2ass_C*
Probab=42.99 E-value=6.3 Score=26.06 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=18.6
Q ss_pred cCCCCccccccCCCCCCCCCCC
Q 034252 66 KNLMAKQDLSELGFRNEGDLEN 87 (100)
Q Consensus 66 ~~LMakdd~~~LGf~~~~~~~~ 87 (100)
..||+.++|.+||.....+|.-
T Consensus 35 ~~LlsE~EWR~LGIqqS~GW~H 56 (79)
T 1cks_A 35 THLMSEEEWRRLGVQQSLGWVH 56 (79)
T ss_dssp SSCCCHHHHHHHTCCCCTTCCC
T ss_pred ccccCHHHHHHhCcccCCCeEE
Confidence 4699999999999988877643
No 10
>1puc_A P13SUC1, P13; cell cycle, domain swapping, strand-exchanged dimer, binding protein; HET: CPS; 1.95A {Schizosaccharomyces pombe} SCOP: d.97.1.1 PDB: 1sce_A
Probab=31.18 E-value=16 Score=25.34 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=17.9
Q ss_pred CCCCccccccCCCCCCCCCCC
Q 034252 67 NLMAKQDLSELGFRNEGDLEN 87 (100)
Q Consensus 67 ~LMakdd~~~LGf~~~~~~~~ 87 (100)
.||+.++|.+||.....+|.-
T Consensus 63 rLLtE~EWR~LGIqqS~GW~H 83 (105)
T 1puc_A 63 RILQEEEWRGLGITQSLGWEM 83 (105)
T ss_dssp CCCCHHHHHHTTCCCCSSCCC
T ss_pred cccCHHHHHHhCcccCCCcEE
Confidence 499999999999988877653
No 11
>3qy2_A Cyclin-dependent kinases regulatory subunit; protein kinase activator, ubiquitin binding, transcription, cell cycle, transferase RE; HET: FLC; 2.59A {Saccharomyces cerevisiae}
Probab=27.08 E-value=17 Score=25.59 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=17.2
Q ss_pred CCCCccccccCCCCCCCCCC
Q 034252 67 NLMAKQDLSELGFRNEGDLE 86 (100)
Q Consensus 67 ~LMakdd~~~LGf~~~~~~~ 86 (100)
.||+.++|..||.....+|.
T Consensus 67 rLLsE~EWR~LGIqqS~GW~ 86 (117)
T 3qy2_A 67 RILTEDEWRGLGITQSLGWE 86 (117)
T ss_dssp CCCCHHHHHHTTCCCCSSCE
T ss_pred eecCHHHHHHhccccCCCcE
Confidence 49999999999998877664
No 12
>1pp9_H Ubiquinol-cytochrome C reductase complex 11 kDa P; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.28.1.1 PDB: 1bgy_H* 1be3_H* 1l0n_H* 1ntk_H* 1ntm_H* 1ntz_H* 1nu1_H* 1l0l_H* 1ppj_H* 1sqb_H* 1sqp_H* 1sqq_H* 1sqv_H* 1sqx_H* 2a06_H* 2fyu_H* 2ybb_H* 1bcc_H* 2bcc_H* 3bcc_H* ...
Probab=25.33 E-value=55 Score=21.06 Aligned_cols=35 Identities=17% Similarity=0.328 Sum_probs=28.4
Q ss_pred ccchHHHHHHHHHHHhcCC---CChhHHHHHHHHhhcc
Q 034252 29 HQCDLEKKDYIGCLKSSGH---QSENCRIFSKKYLECR 63 (100)
Q Consensus 29 geCk~~m~~Yl~CLk~~~~---~~~~CR~lak~YL~CR 63 (100)
..|...+..|-.|..+... ....|-..--+|+.|+
T Consensus 28 ~~C~~~~~~y~~C~eRV~s~~~~~e~C~ee~fd~~hCv 65 (78)
T 1pp9_H 28 EKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHAR 65 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCSCCSHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 3688899999999998733 3468999999999985
No 13
>1ejp_A Syndecan-4; symmetric-parallel-interwinded dimer, signaling protein; NMR {Synthetic} SCOP: j.80.1.1 PDB: 1ejq_A
Probab=25.04 E-value=27 Score=19.09 Aligned_cols=10 Identities=20% Similarity=0.601 Sum_probs=8.4
Q ss_pred CCCCCCCCCC
Q 034252 18 PEKGVFPLDH 27 (100)
Q Consensus 18 PerGSFPLDH 27 (100)
-|.|||.||.
T Consensus 5 KDEGSY~Lde 14 (28)
T 1ejp_A 5 KDEGSYDLGK 14 (28)
T ss_dssp CCCCCCCCCS
T ss_pred ccccccccCC
Confidence 4789999996
No 14
>1qb3_A Cyclin-dependent kinases regulatory subunit; cell cycle mutagenesis domain swapping, cyclin-dependent KIN cycle; 3.00A {Saccharomyces cerevisiae} SCOP: d.97.1.1
Probab=24.63 E-value=23 Score=25.95 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=17.2
Q ss_pred CCCCccccccCCCCCCCCCC
Q 034252 67 NLMAKQDLSELGFRNEGDLE 86 (100)
Q Consensus 67 ~LMakdd~~~LGf~~~~~~~ 86 (100)
.||+.++|..||..-..+|.
T Consensus 67 rLLtE~EWR~LGIqQS~GW~ 86 (150)
T 1qb3_A 67 RILTEDEWRGLGITQSLGWE 86 (150)
T ss_dssp CCCCHHHHHHTTCCCCTTCE
T ss_pred cCCCHHHHHHHccccCcCcE
Confidence 49999999999998877763
No 15
>2l0y_B HCG2020266, COX17 cytochrome C oxidase assembly homolog (S. C pseudogene (COX17); oxidative protein folding, macromolecular complex; NMR {Homo sapiens} PDB: 2lgq_A 2rn9_A 2rnb_A
Probab=23.97 E-value=16 Score=23.50 Aligned_cols=19 Identities=11% Similarity=0.202 Sum_probs=16.0
Q ss_pred cccchHHHHHHHHHHHhcC
Q 034252 28 MHQCDLEKKDYIGCLKSSG 46 (100)
Q Consensus 28 ~geCk~~m~~Yl~CLk~~~ 46 (100)
..+|+..+..|.+||+..+
T Consensus 46 ee~C~~lIeahk~Cmr~~G 64 (67)
T 2l0y_B 46 EEHCGHLIEAHKESMRALG 64 (67)
T ss_dssp -CCSCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 3489999999999999764
No 16
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=23.56 E-value=38 Score=25.92 Aligned_cols=48 Identities=19% Similarity=0.286 Sum_probs=36.7
Q ss_pred HHHHHHHHHhc-CCCChhHHHHHHHHhhcccccCCCCccccccCCCCCCCC
Q 034252 35 KKDYIGCLKSS-GHQSENCRIFSKKYLECRMAKNLMAKQDLSELGFRNEGD 84 (100)
Q Consensus 35 m~~Yl~CLk~~-~~~~~~CR~lak~YL~CRMd~~LMakdd~~~LGf~~~~~ 84 (100)
...-...+|++ -.--.-||-+||---.=+.. =.-+.+|...||.++..
T Consensus 89 ~~~la~~ik~~~~TLRqfCr~yAkvvWN~ml~--n~PPAnWa~~Gf~~~tK 137 (226)
T 4dox_A 89 LAQLASIVKASGTSLRKFCRYFAPIIWNLRTD--KMAPANWEASGYKPSAK 137 (226)
T ss_dssp HHHHHHHHHHTTCCHHHHHHTTHHHHHHHHTT--TSCCTTTTTTTCCGGGG
T ss_pred HHHHHHHHHHhCCCHHHHHHHhhHHHHHHHhc--cCCcHHHHHcCCCccce
Confidence 55667788887 45667899999976666666 35788999999988743
No 17
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=20.60 E-value=40 Score=21.80 Aligned_cols=36 Identities=22% Similarity=0.537 Sum_probs=32.0
Q ss_pred CCCChhHHHHHHHHhhcccccCCC---CccccccCCCCC
Q 034252 46 GHQSENCRIFSKKYLECRMAKNLM---AKQDLSELGFRN 81 (100)
Q Consensus 46 ~~~~~~CR~lak~YL~CRMd~~LM---akdd~~~LGf~~ 81 (100)
+.+...|..+|+.+-.=||+...+ .++-+..||+++
T Consensus 13 Gv~~~~c~rYA~~F~~~ri~e~mL~Dl~~~~Lr~LGi~e 51 (72)
T 3idw_A 13 GVDVSNCQRYTINFDREQLTEDMMPDINNSMLRTLGLRE 51 (72)
T ss_dssp TCCHHHHHHHHHHHHHTTCCGGGGGGCCHHHHHHTTCCH
T ss_pred CCChHHHHHHHHHHHHccCCHHHHhhCCHHHHHHcCCch
Confidence 889999999999999999999754 678899999974
Done!