Query 034252
Match_columns 100
No_of_seqs 103 out of 156
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 19:39:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034252.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034252hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hp8a_ a.17.1.1 (A:) p8-MTCP1 74.3 1.8 0.00013 26.5 3.8 33 31-63 7-39 (68)
2 d1u97a_ a.17.1.2 (A:) Cytochro 65.3 3.5 0.00025 25.3 3.6 43 29-82 24-66 (69)
3 d1u97a_ a.17.1.2 (A:) Cytochro 47.9 5.9 0.00043 24.2 2.5 21 29-49 45-65 (69)
4 d1cksa_ d.97.1.1 (A:) CksHs2 { 40.2 3.5 0.00025 25.5 0.5 23 65-87 33-55 (74)
5 d1puca_ d.97.1.1 (A:) suc1 {Fi 27.5 8.4 0.00061 24.9 0.7 22 67-88 63-84 (101)
6 d1ppjh_ f.28.1.1 (H:) Non-heme 26.8 24 0.0017 20.6 2.7 35 29-63 16-53 (66)
7 d2e9xd1 a.278.1.4 (D:21-165) G 26.3 10 0.00073 25.2 1.0 17 50-66 63-79 (145)
8 d1qb3a_ d.97.1.1 (A:) cks1 {Ba 25.4 10 0.00074 24.9 0.8 20 67-86 62-81 (113)
9 d1v54h_ a.51.1.1 (H:) Cytochro 16.4 97 0.0071 18.7 4.1 46 16-61 7-56 (79)
10 d1sp3a_ a.138.1.3 (A:) Putativ 15.1 45 0.0033 24.4 2.7 22 61-85 413-434 (442)
No 1
>d2hp8a_ a.17.1.1 (A:) p8-MTCP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=74.34 E-value=1.8 Score=26.48 Aligned_cols=33 Identities=15% Similarity=0.473 Sum_probs=29.0
Q ss_pred chHHHHHHHHHHHhcCCCChhHHHHHHHHhhcc
Q 034252 31 CDLEKKDYIGCLKSSGHQSENCRIFSKKYLECR 63 (100)
Q Consensus 31 Ck~~m~~Yl~CLk~~~~~~~~CR~lak~YL~CR 63 (100)
|+...=..-.||+.|+++.++|...-.+.-+|=
T Consensus 7 Ck~~AC~IQ~CLq~N~Y~EskC~~~i~~L~~CC 39 (68)
T d2hp8a_ 7 CQKQACEIQKCLQANSYMESKCQAVIQELRKCC 39 (68)
T ss_dssp THHHHHHHHHHHHHTTTCTTTTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 888888889999999999999999988877663
No 2
>d1u97a_ a.17.1.2 (A:) Cytochrome C oxidase copper chaperone, COX17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=65.31 E-value=3.5 Score=25.26 Aligned_cols=43 Identities=35% Similarity=0.712 Sum_probs=34.5
Q ss_pred ccchHHHHHHHHHHHhcCCCChhHHHHHHHHhhcccccCCCCccccccCCCCCC
Q 034252 29 HQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRMAKNLMAKQDLSELGFRNE 82 (100)
Q Consensus 29 geCk~~m~~Yl~CLk~~~~~~~~CR~lak~YL~CRMd~~LMakdd~~~LGf~~~ 82 (100)
=-|+.....==.|+-.++.++.+|..+...|.+| +..+||.-.
T Consensus 24 CaCpetK~aRDeCil~~ge~~~~C~~lIeahk~C-----------Mr~~GF~v~ 66 (69)
T d1u97a_ 24 CVCKPEKEERDTCILFNGQDSEKCKEFIEKYKEC-----------MKGYGFEVP 66 (69)
T ss_dssp SCCHHHHHHHHHHHHHTCTTSTTSHHHHHHHHHH-----------HHHHTCSSC
T ss_pred ccCchhhhHhhHHHHhcCCcHHHHHHHHHHHHHH-----------HHHcCCCCC
Confidence 4578888888889999988888999999999988 456777543
No 3
>d1u97a_ a.17.1.2 (A:) Cytochrome C oxidase copper chaperone, COX17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=47.87 E-value=5.9 Score=24.16 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=18.0
Q ss_pred ccchHHHHHHHHHHHhcCCCC
Q 034252 29 HQCDLEKKDYIGCLKSSGHQS 49 (100)
Q Consensus 29 geCk~~m~~Yl~CLk~~~~~~ 49 (100)
..|+..+..|-+||+..+.+-
T Consensus 45 ~~C~~lIeahk~CMr~~GF~v 65 (69)
T d1u97a_ 45 EKCKEFIEKYKECMKGYGFEV 65 (69)
T ss_dssp TTSHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHHcCCCC
Confidence 459999999999999987653
No 4
>d1cksa_ d.97.1.1 (A:) CksHs2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.23 E-value=3.5 Score=25.50 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=19.2
Q ss_pred ccCCCCccccccCCCCCCCCCCC
Q 034252 65 AKNLMAKQDLSELGFRNEGDLEN 87 (100)
Q Consensus 65 d~~LMakdd~~~LGf~~~~~~~~ 87 (100)
...||+.++|.+||.....+|.-
T Consensus 33 k~~LlsE~EWR~LGIqqS~GW~H 55 (74)
T d1cksa_ 33 KTHLMSEEEWRRLGVQQSLGWVH 55 (74)
T ss_dssp SSSCCCHHHHHHHTCCCCTTCCC
T ss_pred CccccCHHHHHHhCcccCCCcEE
Confidence 45699999999999988877654
No 5
>d1puca_ d.97.1.1 (A:) suc1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=27.53 E-value=8.4 Score=24.87 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=18.5
Q ss_pred CCCCccccccCCCCCCCCCCCC
Q 034252 67 NLMAKQDLSELGFRNEGDLENP 88 (100)
Q Consensus 67 ~LMakdd~~~LGf~~~~~~~~~ 88 (100)
.||+.++|.+||.....+|.-=
T Consensus 63 rLLtE~EWR~LGIqqS~GW~Hy 84 (101)
T d1puca_ 63 RILQEEEWRGLGITQSLGWEMY 84 (101)
T ss_dssp CCCCHHHHHHTTCCCCSSCCCC
T ss_pred ccCCHHHHHHhccccCCCcEee
Confidence 3999999999999888777543
No 6
>d1ppjh_ f.28.1.1 (H:) Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=26.84 E-value=24 Score=20.65 Aligned_cols=35 Identities=17% Similarity=0.341 Sum_probs=28.2
Q ss_pred ccchHHHHHHHHHHHhc---CCCChhHHHHHHHHhhcc
Q 034252 29 HQCDLEKKDYIGCLKSS---GHQSENCRIFSKKYLECR 63 (100)
Q Consensus 29 geCk~~m~~Yl~CLk~~---~~~~~~CR~lak~YL~CR 63 (100)
..|......|..|..+. +.....|...-=+|+.|+
T Consensus 16 ~~C~~~~~~~~eC~eRV~~~~~~~E~C~eE~fd~~hc~ 53 (66)
T d1ppjh_ 16 EKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHAR 53 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCSCCSHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 35888999999999986 334457999999999885
No 7
>d2e9xd1 a.278.1.4 (D:21-165) GINS complex subunit 4, SLD5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.26 E-value=10 Score=25.23 Aligned_cols=17 Identities=41% Similarity=0.759 Sum_probs=14.4
Q ss_pred hhHHHHHHHHhhccccc
Q 034252 50 ENCRIFSKKYLECRMAK 66 (100)
Q Consensus 50 ~~CR~lak~YL~CRMd~ 66 (100)
...|=+-++||.||+.+
T Consensus 63 eRikfllrsYLR~RL~K 79 (145)
T d2e9xd1 63 ERIRYVLSSYLRCRLMK 79 (145)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46788889999999976
No 8
>d1qb3a_ d.97.1.1 (A:) cks1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=25.44 E-value=10 Score=24.91 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=17.2
Q ss_pred CCCCccccccCCCCCCCCCC
Q 034252 67 NLMAKQDLSELGFRNEGDLE 86 (100)
Q Consensus 67 ~LMakdd~~~LGf~~~~~~~ 86 (100)
.||+.++|.+||..-..+|.
T Consensus 62 rLLtE~EWR~LGIqqS~GW~ 81 (113)
T d1qb3a_ 62 RILTEDEWRGLGITQSLGWE 81 (113)
T ss_dssp CCCCHHHHHHTTCCCCTTCE
T ss_pred ccCCHHHHHHhCcccCCCcE
Confidence 59999999999998777653
No 9
>d1v54h_ a.51.1.1 (H:) Cytochrome c oxidase subunit h {Cow (Bos taurus) [TaxId: 9913]}
Probab=16.39 E-value=97 Score=18.67 Aligned_cols=46 Identities=22% Similarity=0.480 Sum_probs=34.5
Q ss_pred CCCCCCCCC-CCCcccchHHHHHHHHHHH---hcCCCChhHHHHHHHHhh
Q 034252 16 VPPEKGVFP-LDHMHQCDLEKKDYIGCLK---SSGHQSENCRIFSKKYLE 61 (100)
Q Consensus 16 tpPerGSFP-LDH~geCk~~m~~Yl~CLk---~~~~~~~~CR~lak~YL~ 61 (100)
|+|--=-|| -.--.-|-.--.+|-.|.| ..+.+...|..+.+-|-+
T Consensus 7 TaP~D~RFPn~NQTrhC~~~Y~dyhrC~K~~~~kGed~~~C~~f~~~y~s 56 (79)
T d1v54h_ 7 TAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKS 56 (79)
T ss_dssp SCCCCTTSCSSBCHHHHHHHHHHHHHHHHHHHHHTCCGGGGHHHHHHHHH
T ss_pred CCCCCccCCcchhhHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 344444577 5556678888889999955 459999999999998843
No 10
>d1sp3a_ a.138.1.3 (A:) Putative Cytochrome c {Shewanella oneidensis [TaxId: 70863]}
Probab=15.14 E-value=45 Score=24.44 Aligned_cols=22 Identities=18% Similarity=0.456 Sum_probs=17.2
Q ss_pred hcccccCCCCccccccCCCCCCCCC
Q 034252 61 ECRMAKNLMAKQDLSELGFRNEGDL 85 (100)
Q Consensus 61 ~CRMd~~LMakdd~~~LGf~~~~~~ 85 (100)
+|-..++.| ||+.|||..+...
T Consensus 413 ~CH~~~~~l---~~~~lgy~~~~~~ 434 (442)
T d1sp3a_ 413 DCHNKGTRL---DWQALGYQGDPMK 434 (442)
T ss_dssp HHSTTCCSS---CTTTTTCSSCTTT
T ss_pred hcCCCCCcc---CHHHhCCCcchhh
Confidence 477777766 9999999977664
Done!