BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034253
         (100 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
          Length = 548

 Score = 26.9 bits (58), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 4   LLKTSIASHLRSHTQEKREDALSRRGYHVE 33
           LL    ASH+R+H  +  EDAL+    H+E
Sbjct: 147 LLNLYEASHVRTHADDILEDALAFSTIHLE 176


>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
          Length = 548

 Score = 26.9 bits (58), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 4   LLKTSIASHLRSHTQEKREDALSRRGYHVE 33
           LL    ASH+R+H  +  EDAL+    H+E
Sbjct: 147 LLNLYEASHVRTHADDILEDALAFSTIHLE 176


>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
           From Nicotiana Tobaccum With Geraniline
          Length = 535

 Score = 26.9 bits (58), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 4   LLKTSIASHLRSHTQEKREDALSRRGYHVE 33
           LL    ASH+R+H  +  EDAL+    H+E
Sbjct: 134 LLNLYEASHVRTHADDILEDALAFSTIHLE 163


>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
           Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
           Diphospha
 pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
           Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
           Diphosphate
          Length = 550

 Score = 26.9 bits (58), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 4   LLKTSIASHLRSHTQEKREDALSRRGYHVE 33
           LL    ASH+R+H  +  EDAL+    H+E
Sbjct: 149 LLNLYEASHVRTHADDILEDALAFSTIHLE 178


>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
 pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
          Length = 548

 Score = 26.9 bits (58), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 4   LLKTSIASHLRSHTQEKREDALSRRGYHVE 33
           LL    ASH+R+H  +  EDAL+    H+E
Sbjct: 147 LLNLYEASHVRTHADDILEDALAFSTIHLE 176


>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
          Length = 548

 Score = 26.9 bits (58), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 4   LLKTSIASHLRSHTQEKREDALSRRGYHVE 33
           LL    ASH+R+H  +  EDAL+    H+E
Sbjct: 147 LLNLYEASHVRTHADDILEDALAFSTIHLE 176


>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
           Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
           Diphosphate
 pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
           Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
           Diphosphate
          Length = 550

 Score = 26.9 bits (58), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 4   LLKTSIASHLRSHTQEKREDALSRRGYHVE 33
           LL    ASH+R+H  +  EDAL+    H+E
Sbjct: 149 LLNLYEASHVRTHADDILEDALAFSTIHLE 178


>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
           Substrate Analog Farnesyl Hydroxyphosphonate
          Length = 548

 Score = 26.9 bits (58), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 4   LLKTSIASHLRSHTQEKREDALSRRGYHVE 33
           LL    ASH+R+H  +  EDAL+    H+E
Sbjct: 147 LLNLYEASHVRTHADDILEDALAFSTIHLE 176


>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
          Length = 548

 Score = 26.9 bits (58), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 4   LLKTSIASHLRSHTQEKREDALSRRGYHVE 33
           LL    ASH+R+H  +  EDAL+    H+E
Sbjct: 147 LLNLYEASHVRTHADDILEDALAFSTIHLE 176


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.132    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,576,891
Number of Sequences: 62578
Number of extensions: 84465
Number of successful extensions: 235
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 221
Number of HSP's gapped (non-prelim): 14
length of query: 100
length of database: 14,973,337
effective HSP length: 66
effective length of query: 34
effective length of database: 10,843,189
effective search space: 368668426
effective search space used: 368668426
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)