BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034253
         (100 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q06FP7|RR15_PELHO 30S ribosomal protein S15, chloroplastic OS=Pelargonium hortorum
          GN=rps15-A PE=3 SV=1
          Length = 90

 Score = 30.4 bits (67), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 4/33 (12%)

Query: 9  IASHLRSHTQEKREDALSRRGYHVELGPREKAL 41
          I+SHL+ H    R+D LS+RG H  LG R++ L
Sbjct: 36 ISSHLKLH----RKDYLSQRGLHKILGKRQRLL 64


>sp|O66557|BIOA_AQUAE Adenosylmethionine-8-amino-7-oxononanoate aminotransferase
           OS=Aquifex aeolicus (strain VF5) GN=bioA PE=3 SV=1
          Length = 453

 Score = 29.6 bits (65), Expect = 5.8,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 1/75 (1%)

Query: 2   AYLLKTSIASHL-RSHTQEKREDALSRRGYHVELGPREKALLADDPVLKRFKSHKKSVWR 60
           A+L +   A H    HT      A S    ++E+   E+ L    P +K  K   +  W 
Sbjct: 307 AFLGEFGEAKHFYHGHTYTGNNLACSVALANLEVFEEERTLEKLQPKIKLLKERLQEFWE 366

Query: 61  LKRMGDVLTIVVVAG 75
           LK +GDV  +  +AG
Sbjct: 367 LKHVGDVRQLGFMAG 381


>sp|Q5YCC5|TMC7_CHICK Transmembrane channel-like protein 7 OS=Gallus gallus GN=Tmc7 PE=2
           SV=1
          Length = 735

 Score = 29.3 bits (64), Expect = 7.3,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 23/43 (53%)

Query: 47  VLKRFKSHKKSVWRLKRMGDVLTIVVVAGCCYEIYVKAVMREE 89
           + +R    K  ++ L+   +++ I V++GC Y IY   V  +E
Sbjct: 342 IAERTMKEKLQIYSLRIFINIIVIAVLSGCFYSIYRATVFSQE 384


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.132    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,203,878
Number of Sequences: 539616
Number of extensions: 1120180
Number of successful extensions: 3730
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3720
Number of HSP's gapped (non-prelim): 11
length of query: 100
length of database: 191,569,459
effective HSP length: 69
effective length of query: 31
effective length of database: 154,335,955
effective search space: 4784414605
effective search space used: 4784414605
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)