Query 034253
Match_columns 100
No_of_seqs 17 out of 19
Neff 1.8
Searched_HMMs 29240
Date Mon Mar 25 19:40:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034253.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034253hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pk1_B Apoptosis regulator BAX 50.9 4.3 0.00015 23.7 0.6 16 53-68 8-23 (34)
2 2p61_A Hypothetical protein TM 44.1 9 0.00031 27.3 1.4 23 41-63 66-88 (162)
3 2dii_A TFIIH basal transcripti 43.1 7 0.00024 24.9 0.7 24 32-58 14-37 (61)
4 2qup_A BH1478 protein; structu 40.5 9.7 0.00033 26.4 1.1 23 41-63 56-78 (145)
5 1zfd_A SWI5; DNA binding motif 33.7 17 0.00059 16.3 1.1 17 2-18 14-30 (32)
6 1sp2_A SP1F2; zinc finger, tra 31.0 24 0.00082 15.7 1.4 17 2-18 13-29 (31)
7 2qkl_B SPAC19A8.12 protein, SP 30.7 11 0.00037 25.1 0.1 13 45-57 83-95 (95)
8 1f32_A Major pepsin inhibitor 28.1 43 0.0015 24.7 2.9 34 44-77 31-80 (149)
9 1i27_A Transcription factor II 24.7 17 0.00057 23.9 0.1 20 47-66 29-51 (73)
10 3g16_A Uncharacterized protein 24.4 21 0.00071 24.7 0.6 12 25-36 142-153 (156)
11 2ab3_A ZNF29; zinc finger prot 22.4 30 0.001 14.7 0.8 15 3-17 14-28 (29)
12 1znf_A 31ST zinc finger from X 22.0 45 0.0016 14.0 1.4 15 3-17 11-25 (27)
13 1r6j_A Syntenin 1; PDZ, membra 21.4 65 0.0022 19.8 2.4 23 52-74 58-80 (82)
14 1x4p_A Putative splicing facto 20.4 47 0.0016 21.5 1.6 30 36-65 25-62 (66)
15 2kvf_A Zinc finger and BTB dom 20.0 43 0.0015 14.3 1.1 15 3-17 13-27 (28)
No 1
>3pk1_B Apoptosis regulator BAX; BCL-2 family fold, regulation of apoptosis, mitochondri apoptosis-apoptosis regulator complex; 2.49A {Homo sapiens} PDB: 3pl7_C 2xa0_C
Probab=50.93 E-value=4.3 Score=23.71 Aligned_cols=16 Identities=56% Similarity=0.553 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHhccee
Q 034253 53 SHKKSVWRLKRMGDVL 68 (100)
Q Consensus 53 SyK~sv~~~~~~g~vL 68 (100)
++|+-+.+|.+|||-|
T Consensus 8 ~~K~l~~cL~~IgDEl 23 (34)
T 3pk1_B 8 STKKLSECLKRIGDEL 23 (34)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 5788899999999865
No 2
>2p61_A Hypothetical protein TM_1646; structural genomics, unknown function, PSI-2, protein structure initiative; 2.70A {Thermotoga maritima MSB8} SCOP: a.24.29.1
Probab=44.14 E-value=9 Score=27.26 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.2
Q ss_pred ccccchhhhhhhhhHHHHHHHHH
Q 034253 41 LLADDPVLKRFKSHKKSVWRLKR 63 (100)
Q Consensus 41 LL~ED~aLKrFKSyK~sv~~~~~ 63 (100)
-|++.|.++.|+.||+.|++.-+
T Consensus 66 rL~~~~t~~~l~~YK~lVK~FL~ 88 (162)
T 2p61_A 66 ELVRSPTPSNLKRYKNAIKEFLK 88 (162)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHHHHH
Confidence 57889999999999999998654
No 3
>2dii_A TFIIH basal transcription factor complex P62 subunit; BTF2-P62, general transcription factor IIH polypeptide 1, nuclear protein; NMR {Homo sapiens} SCOP: a.240.1.1
Probab=43.06 E-value=7 Score=24.85 Aligned_cols=24 Identities=38% Similarity=0.492 Sum_probs=17.5
Q ss_pred cccCcchhhccccchhhhhhhhhHHHH
Q 034253 32 VELGPREKALLADDPVLKRFKSHKKSV 58 (100)
Q Consensus 32 vE~GaREKALL~ED~aLKrFKSyK~sv 58 (100)
-|+-.| +.||.|||.|+ +=||.-|
T Consensus 14 ~ELe~k-~rlL~eN~~L~--qLyk~LV 37 (61)
T 2dii_A 14 KELEEK-NRMLQEDPVLF--QLYKDLV 37 (61)
T ss_dssp HHHHHH-HHHHHHCHHHH--HHHHHHH
T ss_pred HhHHHH-HHHHHhCHHHH--HHHHHHH
Confidence 444433 35889999998 7888876
No 4
>2qup_A BH1478 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Bacillus halodurans}
Probab=40.53 E-value=9.7 Score=26.38 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=19.9
Q ss_pred ccccchhhhhhhhhHHHHHHHHH
Q 034253 41 LLADDPVLKRFKSHKKSVWRLKR 63 (100)
Q Consensus 41 LL~ED~aLKrFKSyK~sv~~~~~ 63 (100)
-|++.|.++.|+.||+.|++.-+
T Consensus 56 rL~~~~t~~~l~~YK~lVk~Fl~ 78 (145)
T 2qup_A 56 LLSETRTIEELRKYKELVKEFVG 78 (145)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHH
Confidence 47889999999999999998643
No 5
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=33.75 E-value=17 Score=16.29 Aligned_cols=17 Identities=24% Similarity=0.518 Sum_probs=12.6
Q ss_pred chhhhhhhhhhhccCCc
Q 034253 2 AYLLKTSIASHLRSHTQ 18 (100)
Q Consensus 2 afll~ssi~S~lRS~s~ 18 (100)
+|.-+++|..|.++|+.
T Consensus 14 ~f~~~~~L~~H~~~H~~ 30 (32)
T 1zfd_A 14 AFVRNHDLIRHKKSHQE 30 (32)
T ss_dssp CBSSSHHHHHHHGGGTC
T ss_pred ccCCHHHHHHHHHHccC
Confidence 45556889999988764
No 6
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=30.96 E-value=24 Score=15.73 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=12.6
Q ss_pred chhhhhhhhhhhccCCc
Q 034253 2 AYLLKTSIASHLRSHTQ 18 (100)
Q Consensus 2 afll~ssi~S~lRS~s~ 18 (100)
+|--+++|..|.+.|+.
T Consensus 13 ~f~~~~~L~~H~~~H~~ 29 (31)
T 1sp2_A 13 RFTRSDELQRHKRTHTG 29 (31)
T ss_dssp BCSSHHHHHHHHTTTSC
T ss_pred ccCCHhHHHHHHHHhcC
Confidence 35556889999988764
No 7
>2qkl_B SPAC19A8.12 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} SCOP: a.242.1.1
Probab=30.65 E-value=11 Score=25.13 Aligned_cols=13 Identities=15% Similarity=0.261 Sum_probs=7.8
Q ss_pred chhhhhhhhhHHH
Q 034253 45 DPVLKRFKSHKKS 57 (100)
Q Consensus 45 D~aLKrFKSyK~s 57 (100)
|.+++.|++||+.
T Consensus 83 ~~~~~~F~~YK~~ 95 (95)
T 2qkl_B 83 EEAFDDFLRYKTR 95 (95)
T ss_dssp HHHHHHHHC----
T ss_pred HHHHHHHHHhccC
Confidence 6789999999963
No 8
>1f32_A Major pepsin inhibitor PI-3; proteinase inhibitor, hydrolase inhibitor; 1.75A {Ascaris suum} SCOP: d.62.1.1 PDB: 1f34_B*
Probab=28.06 E-value=43 Score=24.66 Aligned_cols=34 Identities=12% Similarity=0.159 Sum_probs=27.0
Q ss_pred cchhhhhhhhhHHHHHHHHHh----------------cceeeeeeeechh
Q 034253 44 DDPVLKRFKSHKKSVWRLKRM----------------GDVLTIVVVAGCC 77 (100)
Q Consensus 44 ED~aLKrFKSyK~sv~~~~~~----------------g~vLT~vVvagCc 77 (100)
+|-.+.-||||++-+.--+.+ |+--|-.++-||-
T Consensus 31 ~~dei~~f~~y~~~l~~~~~~~~~fsp~~pk~PsFC~~~Dttqy~FdGCv 80 (149)
T 1f32_A 31 EGDDIQVGKEFAARVEDCTNVKHDMAPTCTKPPPFCGPQDMKMFNFVGCS 80 (149)
T ss_dssp CGGGHHHHHHHHHHHHHHHHTTCCCSHHHHCCCGGGCCTTCEEEEETTEE
T ss_pred cchhhHHHHHHHHHHHHHHhhHhhcCCCCCCCCCccCcccceEEEEeeeE
Confidence 455788999999999888887 5566777888884
No 9
>1i27_A Transcription factor IIF; general transcription factor, RAP74, RAP30, TFIIF, RNA polymerase II, winged-helix domain; 1.02A {Homo sapiens} SCOP: a.4.5.30 PDB: 1j2x_A 2k7l_A*
Probab=24.70 E-value=17 Score=23.88 Aligned_cols=20 Identities=25% Similarity=0.464 Sum_probs=12.4
Q ss_pred hhhhhhhhH---HHHHHHHHhcc
Q 034253 47 VLKRFKSHK---KSVWRLKRMGD 66 (100)
Q Consensus 47 aLKrFKSyK---~sv~~~~~~g~ 66 (100)
-|++||+++ ++-.-+..+.|
T Consensus 29 Ll~KFK~r~~~~~~~e~v~~~a~ 51 (73)
T 1i27_A 29 LLKKFQTKKTGLSSEQTVNVLAQ 51 (73)
T ss_dssp HHHTSCHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCHHHHHHHHH
Confidence 378999998 55444444333
No 10
>3g16_A Uncharacterized protein with cystatin-like fold; YP_001022489.1, protein of unknown function with cystatin-LI structural genomics; HET: MSE; 1.45A {Methylibium petroleiphilum PM1}
Probab=24.40 E-value=21 Score=24.67 Aligned_cols=12 Identities=33% Similarity=0.515 Sum_probs=9.9
Q ss_pred ccccccccccCc
Q 034253 25 LSRRGYHVELGP 36 (100)
Q Consensus 25 ~~rRgfHvE~Ga 36 (100)
-.-||||++|+-
T Consensus 142 ~~~~~~~~~~~~ 153 (156)
T 3g16_A 142 YAGRGYRVTSPR 153 (156)
T ss_dssp TTTTTCCCSCTT
T ss_pred ccCCccccCCCC
Confidence 578999999863
No 11
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=22.42 E-value=30 Score=14.69 Aligned_cols=15 Identities=20% Similarity=0.364 Sum_probs=10.5
Q ss_pred hhhhhhhhhhhccCC
Q 034253 3 YLLKTSIASHLRSHT 17 (100)
Q Consensus 3 fll~ssi~S~lRS~s 17 (100)
|--+++|..|.+.|+
T Consensus 14 f~~~~~l~~H~~~H~ 28 (29)
T 2ab3_A 14 FNDRRKLNRHKKIHT 28 (29)
T ss_dssp ESSHHHHHHHHGGGT
T ss_pred cCCHHHHHHHHHHhC
Confidence 444578888888764
No 12
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=22.04 E-value=45 Score=13.97 Aligned_cols=15 Identities=27% Similarity=0.618 Sum_probs=10.7
Q ss_pred hhhhhhhhhhhccCC
Q 034253 3 YLLKTSIASHLRSHT 17 (100)
Q Consensus 3 fll~ssi~S~lRS~s 17 (100)
|--+++|..|.+.++
T Consensus 11 f~~~~~l~~H~~~h~ 25 (27)
T 1znf_A 11 FVEKSALSRHQRVHK 25 (27)
T ss_dssp CSSHHHHHHHGGGTC
T ss_pred CCCHHHHHHHHHHcC
Confidence 444578888888775
No 13
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=21.36 E-value=65 Score=19.75 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHhcceeeeeeee
Q 034253 52 KSHKKSVWRLKRMGDVLTIVVVA 74 (100)
Q Consensus 52 KSyK~sv~~~~~~g~vLT~vVva 74 (100)
++|..-|..++..|+.+|+.|+-
T Consensus 58 ~~~~evv~llr~~g~~V~L~v~p 80 (82)
T 1r6j_A 58 LKDSQIADILSTSGTVVTITIMP 80 (82)
T ss_dssp CCHHHHHHHHHHSCSEEEEEEEE
T ss_pred CCHHHHHHHHhcCCCEEEEEEEe
Confidence 57999999999999999998863
No 14
>1x4p_A Putative splicing factor, arginine/serine-rich 14; SURP domain, SFRS14 protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=20.35 E-value=47 Score=21.54 Aligned_cols=30 Identities=33% Similarity=0.627 Sum_probs=24.5
Q ss_pred cchhhccccchhh--------hhhhhhHHHHHHHHHhc
Q 034253 36 PREKALLADDPVL--------KRFKSHKKSVWRLKRMG 65 (100)
Q Consensus 36 aREKALL~ED~aL--------KrFKSyK~sv~~~~~~g 65 (100)
+.|.|+..||||. +-||=||..+-.+++..
T Consensus 25 ~~~~a~~k~nPaf~FL~D~~S~eykYYr~KlaE~r~~k 62 (66)
T 1x4p_A 25 PKERTLLKEDPAYWFLSDENSLEYKYYKLKLAEMQRSG 62 (66)
T ss_dssp HHHHHHHHHSGGGCTTTCCSSSHHHHHHHHHHHHHHSS
T ss_pred HHHHHHcccCCceeeeeCCCcHHHHHHHHHHHHHHhhc
Confidence 5678889999987 47899999998888753
No 15
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.05 E-value=43 Score=14.25 Aligned_cols=15 Identities=40% Similarity=0.718 Sum_probs=10.4
Q ss_pred hhhhhhhhhhhccCC
Q 034253 3 YLLKTSIASHLRSHT 17 (100)
Q Consensus 3 fll~ssi~S~lRS~s 17 (100)
|--++.|..|.+.+.
T Consensus 13 f~~~~~l~~H~~~h~ 27 (28)
T 2kvf_A 13 FSLKHQMETHYRVHT 27 (28)
T ss_dssp ESCHHHHHHHHTTSC
T ss_pred cCCHHHHHHHHHhcC
Confidence 444578888888764
Done!