Query 034253
Match_columns 100
No_of_seqs 17 out of 19
Neff 1.8
Searched_HMMs 13730
Date Mon Mar 25 19:40:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034253.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034253hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fnea1 b.36.1.1 (A:1955-2042) 42.5 7.9 0.00057 22.3 2.4 23 52-74 66-88 (88)
2 d2p61a1 a.24.29.1 (A:34-152) H 41.5 5 0.00037 25.8 1.4 23 41-63 31-53 (119)
3 d1ls1a1 a.24.13.1 (A:1-88) Sig 34.9 7.1 0.00052 23.7 1.3 24 38-61 35-58 (88)
4 d1joga_ a.24.16.2 (A:) Hypothe 31.7 6 0.00044 25.6 0.6 38 48-85 6-55 (135)
5 d1q3oa_ b.36.1.1 (A:) Shank1, 31.6 18 0.0013 20.8 2.7 23 52-74 78-100 (104)
6 d1j8yf1 a.24.13.1 (F:3-86) Sig 29.0 10 0.00075 22.7 1.3 25 38-62 31-55 (84)
7 d1r6ja_ b.36.1.1 (A:) Syntenin 27.8 21 0.0015 20.3 2.5 23 52-74 58-80 (82)
8 d1xfja_ d.194.1.2 (A:) Hypothe 26.9 7.5 0.00055 26.9 0.4 27 55-81 139-171 (256)
9 d2r7ga1 a.74.1.3 (A:380-578) R 26.7 8.9 0.00065 27.0 0.8 14 72-85 106-119 (199)
10 d2glia3 g.37.1.1 (A:168-197) F 26.3 9.9 0.00072 19.3 0.7 17 2-18 13-29 (30)
11 d1v54j_ f.23.4.1 (J:) Mitochon 25.3 4 0.00029 24.3 -1.2 22 63-84 33-54 (58)
12 d1x4pa1 a.217.1.1 (A:8-60) Arg 22.8 7.9 0.00058 22.9 -0.1 19 34-53 16-34 (53)
13 d2dlka2 g.37.1.1 (A:38-73) Zin 21.8 7.5 0.00054 20.3 -0.3 18 2-19 12-29 (36)
14 d1wgwa_ a.24.13.1 (A:) Signal 21.1 15 0.0011 22.5 1.0 22 39-60 41-62 (99)
15 d2h3la1 b.36.1.1 (A:1310-1412) 20.4 33 0.0024 20.1 2.5 38 36-73 55-98 (103)
No 1
>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.53 E-value=7.9 Score=22.26 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.3
Q ss_pred hhhHHHHHHHHHhcceeeeeeee
Q 034253 52 KSHKKSVWRLKRMGDVLTIVVVA 74 (100)
Q Consensus 52 KSyK~sv~~~~~~g~vLT~vVva 74 (100)
.+|..-+.-++..+|.++++||+
T Consensus 66 ~~~~~v~~~l~~~~~~v~L~Vls 88 (88)
T d2fnea1 66 VTHEEAVAILKRTKGTVTLMVLS 88 (88)
T ss_dssp CCHHHHHHHHHHCCSSEEEEEEE
T ss_pred CCHHHHHHHHHcCCCcEEEEEEC
Confidence 47888999999999999999985
No 2
>d2p61a1 a.24.29.1 (A:34-152) Hypothetical protein TM1646 {Thermotoga maritima [TaxId: 2336]}
Probab=41.52 E-value=5 Score=25.75 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.2
Q ss_pred ccccchhhhhhhhhHHHHHHHHH
Q 034253 41 LLADDPVLKRFKSHKKSVWRLKR 63 (100)
Q Consensus 41 LL~ED~aLKrFKSyK~sv~~~~~ 63 (100)
.|++.|.+..++.||+.|++.-+
T Consensus 31 ~L~~~~t~~~l~~YK~lIk~fl~ 53 (119)
T d2p61a1 31 ELVRSPTPSNLKRYKNAIKEFLK 53 (119)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHHHHH
Confidence 48899999999999999998654
No 3
>d1ls1a1 a.24.13.1 (A:1-88) Signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=34.88 E-value=7.1 Score=23.73 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=20.5
Q ss_pred hhhccccchhhhhhhhhHHHHHHH
Q 034253 38 EKALLADDPVLKRFKSHKKSVWRL 61 (100)
Q Consensus 38 EKALL~ED~aLKrFKSyK~sv~~~ 61 (100)
..|||+-|++++==|+.-+.|++=
T Consensus 35 r~ALLeADV~l~vvk~f~~~ik~k 58 (88)
T d1ls1a1 35 RRALMDADVNLEVARDFVERVREE 58 (88)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHH
Confidence 379999999999998888888753
No 4
>d1joga_ a.24.16.2 (A:) Hypothetical protein HI0074 {Haemophilus influenzae [TaxId: 727]}
Probab=31.69 E-value=6 Score=25.60 Aligned_cols=38 Identities=21% Similarity=0.354 Sum_probs=26.4
Q ss_pred hhhhhhhHHHHHHHHHh------cceeeeeeeech------hHHHHHHHH
Q 034253 48 LKRFKSHKKSVWRLKRM------GDVLTIVVVAGC------CYEIYVKAV 85 (100)
Q Consensus 48 LKrFKSyK~sv~~~~~~------g~vLT~vVvagC------cYEIyv~a~ 85 (100)
-|.|+|+++++.+++.. .+.+-=.|..|| |||+.-|++
T Consensus 6 ~ka~~~l~~Al~~~~~~~~~~~~~~~~~d~i~dg~IqrFE~t~ElaWK~l 55 (135)
T d1joga_ 6 DAAFYSLEQTVVQISDRNWFDMQPSIVQDTLIAGAIQKFEFVYELSLKMM 55 (135)
T ss_dssp HHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999998752 122222467777 789887754
No 5
>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=31.64 E-value=18 Score=20.78 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHHhcceeeeeeee
Q 034253 52 KSHKKSVWRLKRMGDVLTIVVVA 74 (100)
Q Consensus 52 KSyK~sv~~~~~~g~vLT~vVva 74 (100)
.+|..-++.+++.|+.+++.|+.
T Consensus 78 ~~h~evv~~ik~~~~~v~L~V~~ 100 (104)
T d1q3oa_ 78 VGHRQVVNMIRQGGNTLMVKVVM 100 (104)
T ss_dssp CCHHHHHHHHHHTTTEEEEEEEE
T ss_pred CCHHHHHHHHHcCCCeEEEEEEe
Confidence 38899999999999999999875
No 6
>d1j8yf1 a.24.13.1 (F:3-86) Signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}
Probab=29.04 E-value=10 Score=22.72 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=21.1
Q ss_pred hhhccccchhhhhhhhhHHHHHHHH
Q 034253 38 EKALLADDPVLKRFKSHKKSVWRLK 62 (100)
Q Consensus 38 EKALL~ED~aLKrFKSyK~sv~~~~ 62 (100)
..|||+-|++++==|...++|+.=-
T Consensus 31 r~ALLeADVn~~vv~~f~~~ik~k~ 55 (84)
T d1j8yf1 31 QKSLISADVNVKLVFSLTNKIKERL 55 (84)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCHHHHHHHHHHHHHHH
Confidence 3689999999999988888887643
No 7
>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.77 E-value=21 Score=20.32 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.1
Q ss_pred hhhHHHHHHHHHhcceeeeeeee
Q 034253 52 KSHKKSVWRLKRMGDVLTIVVVA 74 (100)
Q Consensus 52 KSyK~sv~~~~~~g~vLT~vVva 74 (100)
.+|..-+.-++..|+.+|+.|+-
T Consensus 58 ~t~~~~~~ll~~~~~~v~l~v~p 80 (82)
T d1r6ja_ 58 LKDSQIADILSTSGTVVTITIMP 80 (82)
T ss_dssp CCHHHHHHHHHHSCSEEEEEEEE
T ss_pred CCHHHHHHHHHcCCCEEEEEEEc
Confidence 46889999999999999999873
No 8
>d1xfja_ d.194.1.2 (A:) Hypothetical protein CC0490 {Caulobacter crescentus [TaxId: 155892]}
Probab=26.85 E-value=7.5 Score=26.88 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=15.6
Q ss_pred HHHHHHHHHhc----cee--eeeeeechhHHHH
Q 034253 55 KKSVWRLKRMG----DVL--TIVVVAGCCYEIY 81 (100)
Q Consensus 55 K~sv~~~~~~g----~vL--T~vVvagCcYEIy 81 (100)
++.+..+++.| |+. ..=-+.+||||+-
T Consensus 139 ~~~i~~~~~~g~~~~~i~a~IGP~I~~~~YEV~ 171 (256)
T d1xfja_ 139 QSAVDRMVELGASPANITGVVGPCIGPKSYEVG 171 (256)
T ss_dssp HHHHHHHHHTTCCGGGCEEEECSBCCTTTCEEE
T ss_pred hHHHHHHHHcCCCcccEEEEEccccccceeeec
Confidence 45566666655 322 2223567999974
No 9
>d2r7ga1 a.74.1.3 (A:380-578) Retinoblastoma tumor suppressor domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.69 E-value=8.9 Score=26.96 Aligned_cols=14 Identities=14% Similarity=0.439 Sum_probs=11.2
Q ss_pred eeechhHHHHHHHH
Q 034253 72 VVAGCCYEIYVKAV 85 (100)
Q Consensus 72 VvagCcYEIyv~a~ 85 (100)
-|.+||.||.+-+-
T Consensus 106 sLlACclEvVl~~y 119 (199)
T d2r7ga1 106 SLLACALEVVMATY 119 (199)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 37899999987664
No 10
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.30 E-value=9.9 Score=19.29 Aligned_cols=17 Identities=41% Similarity=0.620 Sum_probs=13.7
Q ss_pred chhhhhhhhhhhccCCc
Q 034253 2 AYLLKTSIASHLRSHTQ 18 (100)
Q Consensus 2 afll~ssi~S~lRS~s~ 18 (100)
+|.-++.|..|+|.|+-
T Consensus 13 ~F~~~~~L~~H~r~HtG 29 (30)
T d2glia3 13 SYSRLENLKTHLRSHTG 29 (30)
T ss_dssp CCSSHHHHHHHHHHTTT
T ss_pred eECChhHhhhhcCcCcC
Confidence 56667999999998863
No 11
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=25.32 E-value=4 Score=24.35 Aligned_cols=22 Identities=14% Similarity=-0.043 Sum_probs=17.4
Q ss_pred HhcceeeeeeeechhHHHHHHH
Q 034253 63 RMGDVLTIVVVAGCCYEIYVKA 84 (100)
Q Consensus 63 ~~g~vLT~vVvagCcYEIyv~a 84 (100)
|+-=+||++-+..|+|.||.-+
T Consensus 33 r~Tm~L~~~G~~~s~~~l~~a~ 54 (58)
T d1v54j_ 33 RVTMTLCLGGTLYSLYCLGWAS 54 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4445788999999999999754
No 12
>d1x4pa1 a.217.1.1 (A:8-60) Arginine/serine-rich-splicing factor 14 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.75 E-value=7.9 Score=22.92 Aligned_cols=19 Identities=47% Similarity=0.873 Sum_probs=14.9
Q ss_pred cCcchhhccccchhhhhhhh
Q 034253 34 LGPREKALLADDPVLKRFKS 53 (100)
Q Consensus 34 ~GaREKALL~ED~aLKrFKS 53 (100)
+.|+|.+++.+||+. +|-|
T Consensus 16 LspkeR~~~k~~P~y-WFLs 34 (53)
T d1x4pa1 16 LSPKERTLLKEDPAY-WFLS 34 (53)
T ss_dssp SCHHHHHHHHHSGGG-CTTT
T ss_pred CCHHHHHHhhcCCCe-EEee
Confidence 678999999999985 4443
No 13
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.84 E-value=7.5 Score=20.30 Aligned_cols=18 Identities=17% Similarity=0.530 Sum_probs=14.9
Q ss_pred chhhhhhhhhhhccCCcc
Q 034253 2 AYLLKTSIASHLRSHTQE 19 (100)
Q Consensus 2 afll~ssi~S~lRS~s~~ 19 (100)
+|.-++.|..|+|.|+..
T Consensus 12 ~F~~~~~L~~H~r~Htge 29 (36)
T d2dlka2 12 SFNFKKHLKEHMKLHSDT 29 (36)
T ss_dssp EESSHHHHHHHHHHHHTS
T ss_pred eeCChhHhccccCeeCCC
Confidence 566679999999999876
No 14
>d1wgwa_ a.24.13.1 (A:) Signal recognition particle 54 kDa protein, SRP54 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.10 E-value=15 Score=22.49 Aligned_cols=22 Identities=32% Similarity=0.317 Sum_probs=18.8
Q ss_pred hhccccchhhhhhhhhHHHHHH
Q 034253 39 KALLADDPVLKRFKSHKKSVWR 60 (100)
Q Consensus 39 KALL~ED~aLKrFKSyK~sv~~ 60 (100)
.|||+-|++++==|...+.|++
T Consensus 41 ~ALLeADVn~~vV~~f~~~Ik~ 62 (99)
T d1wgwa_ 41 TALLEADVNIKLVKQLRENVKS 62 (99)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHT
T ss_pred HHHHHccCCHHHHHHHHHHHHH
Confidence 6899999999988888887764
No 15
>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.43 E-value=33 Score=20.10 Aligned_cols=38 Identities=24% Similarity=0.399 Sum_probs=26.6
Q ss_pred cchhhccccchhhh------hhhhhHHHHHHHHHhcceeeeeee
Q 034253 36 PREKALLADDPVLK------RFKSHKKSVWRLKRMGDVLTIVVV 73 (100)
Q Consensus 36 aREKALL~ED~aLK------rFKSyK~sv~~~~~~g~vLT~vVv 73 (100)
+-+++|-.-|--|+ .=.+|..-|.-++..+|.++++|.
T Consensus 55 ~A~~~L~~GD~Il~VNg~~v~~~t~~eav~~l~~~~~~v~L~V~ 98 (103)
T d2h3la1 55 PASKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIV 98 (103)
T ss_dssp TTTTTCCTTCEEEEETTEECSSCCHHHHHHHHHHCCSEEEEEEE
T ss_pred hHHhccCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEE
Confidence 33555555444332 135899999999999999999885
Done!