BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034257
         (100 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4HEB|A Chain A, The Crystal Structure Of Maf Protein Of Bacillus
          Subtilis
 pdb|4HEB|B Chain B, The Crystal Structure Of Maf Protein Of Bacillus
          Subtilis
          Length = 210

 Score = 35.0 bits (79), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 30/49 (61%)

Query: 40 IILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAK 88
          +IL S S  RKE+L  +   ++++ +E++EK  R   PE+ V  LA+ K
Sbjct: 26 LILASQSPRRKELLDLLQLPYSIIVSEVEEKLNRNFSPEENVQWLAKQK 74


>pdb|1EX2|A Chain A, Crystal Structure Of Bacillus Subtilis Maf Protein
 pdb|1EX2|B Chain B, Crystal Structure Of Bacillus Subtilis Maf Protein
 pdb|1EXC|A Chain A, Crystal Structure Of B. Subtilis Maf Protein Complexed
          With D-(Utp)
 pdb|1EXC|B Chain B, Crystal Structure Of B. Subtilis Maf Protein Complexed
          With D-(Utp)
          Length = 189

 Score = 35.0 bits (79), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 30/49 (61%)

Query: 40 IILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAK 88
          +IL S S  RKE+L  +   ++++ +E++EK  R   PE+ V  LA+ K
Sbjct: 5  LILASQSPRRKELLDLLQLPYSIIVSEVEEKLNRNFSPEENVQWLAKQK 53


>pdb|2AMH|A Chain A, Crystal Structure Of Maf-Like Protein Tbru21784aaa From
          T.Brucei
          Length = 207

 Score = 30.0 bits (66), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%)

Query: 40 IILGSSSMARKEILAEMGYE----FTVVTAEIDEKSIRKDKPEDLVMALAEAK 88
          +I+G+SS  R  +L E   +    F ++  +IDEK+ R   P +L  ++A AK
Sbjct: 12 MIIGTSSAFRANVLREHFGDRFRNFVLLPPDIDEKAYRAADPFELTESIARAK 64


>pdb|1IQ6|A Chain A, (R)-Hydratase From A. Caviae Involved In Pha Biosynthesis
 pdb|1IQ6|B Chain B, (R)-Hydratase From A. Caviae Involved In Pha Biosynthesis
          Length = 134

 Score = 26.9 bits (58), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 7/76 (9%)

Query: 9   FRTAHLQTTLESGTEFERKRGMARSESSPIKIILGSSSMARKEILAEMGYEFTV------ 62
           F   HL     + T FER        +S    +LG     +  I       F +      
Sbjct: 33  FNPLHLDPAFAATTAFERPIVHGMLLASLFSGLLGQQLPGKGSIYLGQSLSFKLPVFVGD 92

Query: 63  -VTAEIDEKSIRKDKP 77
            VTAE++  ++R+DKP
Sbjct: 93  EVTAEVEVTALREDKP 108


>pdb|3DBG|A Chain A, Crystal Structure Of Cytochrome P450 170a1 (Cyp170a1) From
           Streptomyces Coelicolor
 pdb|3DBG|B Chain B, Crystal Structure Of Cytochrome P450 170a1 (Cyp170a1) From
           Streptomyces Coelicolor
 pdb|3EL3|A Chain A, Distinct Monooxygenase And Farnesene Synthase Active Sites
           In Cytochrome P450 170a1
 pdb|3EL3|B Chain B, Distinct Monooxygenase And Farnesene Synthase Active Sites
           In Cytochrome P450 170a1
          Length = 467

 Score = 25.4 bits (54), Expect = 7.7,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 28/65 (43%)

Query: 28  RGMARSESSPIKIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEA 87
           RGM R    P+  +      A +     +     +V   I E+     KP+DL+ AL EA
Sbjct: 192 RGMYRRMVVPLGPLYRLPLPANRRFNDALADLHLLVDEIIAERRASGQKPDDLLTALLEA 251

Query: 88  KKPSG 92
           K  +G
Sbjct: 252 KDDNG 256


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.123    0.317 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,347,265
Number of Sequences: 62578
Number of extensions: 69398
Number of successful extensions: 191
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 188
Number of HSP's gapped (non-prelim): 5
length of query: 100
length of database: 14,973,337
effective HSP length: 66
effective length of query: 34
effective length of database: 10,843,189
effective search space: 368668426
effective search space used: 368668426
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)