Query 034257
Match_columns 100
No_of_seqs 112 out of 1051
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 11:30:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034257.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034257hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14368 Maf-like protein; Pro 99.8 8.9E-19 1.9E-23 130.3 8.5 61 35-95 2-62 (193)
2 TIGR00172 maf MAF protein. Thi 99.8 8.1E-19 1.8E-23 129.4 8.1 59 38-96 3-61 (183)
3 COG0424 Maf Nucleotide-binding 99.8 8.5E-19 1.8E-23 131.0 7.9 60 37-96 2-61 (193)
4 PRK00234 Maf-like protein; Rev 99.8 1.4E-18 3.1E-23 128.9 7.9 57 39-95 3-59 (192)
5 PRK02141 Maf-like protein; Rev 99.8 2.1E-18 4.6E-23 129.5 8.2 60 37-96 8-67 (207)
6 PRK04056 Maf-like protein; Rev 99.8 1.9E-18 4.2E-23 127.2 7.8 58 39-96 1-58 (180)
7 PRK00148 Maf-like protein; Rev 99.8 2.3E-18 5.1E-23 128.0 7.9 58 38-95 1-58 (194)
8 PRK04425 Maf-like protein; Rev 99.8 2.8E-18 6.1E-23 127.9 8.3 59 37-95 4-62 (196)
9 PRK00032 Maf-like protein; Rev 99.8 2.8E-18 6.1E-23 127.3 8.1 57 39-95 3-59 (190)
10 PRK00884 Maf-like protein; Rev 99.8 2.8E-18 6.1E-23 127.7 7.9 58 38-95 2-59 (194)
11 PRK00078 Maf-like protein; Rev 99.8 3.1E-18 6.8E-23 127.0 7.9 59 38-96 1-60 (192)
12 PRK04694 Maf-like protein; Rev 99.8 3.2E-18 6.8E-23 127.0 7.7 58 39-96 1-58 (190)
13 PRK14367 Maf-like protein; Pro 99.7 4.3E-18 9.3E-23 127.3 8.1 57 39-95 3-59 (202)
14 cd00555 Maf Nucleotide binding 99.7 5.4E-18 1.2E-22 124.5 7.4 57 40-96 1-57 (180)
15 PRK02478 Maf-like protein; Rev 99.7 7.4E-18 1.6E-22 125.7 7.8 58 38-95 3-66 (199)
16 PRK14366 Maf-like protein; Pro 99.7 1.1E-17 2.3E-22 124.8 8.4 60 36-95 3-63 (195)
17 PRK01526 Maf-like protein; Rev 99.7 1.1E-17 2.4E-22 125.5 8.2 61 36-96 6-67 (205)
18 PRK01441 Maf-like protein; Rev 99.7 9.5E-18 2.1E-22 125.8 7.8 60 37-96 4-64 (207)
19 PRK00648 Maf-like protein; Rev 99.7 1.2E-17 2.6E-22 123.9 8.2 58 38-95 3-61 (191)
20 PF02545 Maf: Maf-like protein 99.7 4.5E-18 9.8E-23 126.4 5.6 59 38-96 1-60 (195)
21 PRK14363 Maf-like protein; Pro 99.7 1.4E-17 3.1E-22 124.9 7.7 57 38-96 1-57 (204)
22 PRK14362 Maf-like protein; Pro 99.7 2.4E-17 5.2E-22 123.9 8.8 60 37-96 11-71 (207)
23 PRK14365 Maf-like protein; Pro 99.7 2.1E-17 4.6E-22 123.2 7.5 57 39-95 3-60 (197)
24 PRK01839 Maf-like protein; Rev 99.7 3.1E-17 6.8E-22 123.2 7.9 59 38-96 10-74 (209)
25 PRK14361 Maf-like protein; Pro 99.7 2.8E-17 6E-22 121.7 7.2 55 40-95 1-55 (187)
26 PRK14364 Maf-like protein; Pro 99.7 9E-17 2E-21 118.4 7.1 54 42-95 1-54 (181)
27 KOG1509 Predicted nucleic acid 99.5 1.9E-14 4.1E-19 108.3 7.0 63 35-97 7-71 (209)
28 cd00985 Maf_Ham1 Maf_Ham1. Maf 99.4 4E-13 8.8E-18 92.3 7.1 56 40-96 1-57 (131)
29 COG0181 HemC Porphobilinogen d 74.9 2.5 5.5E-05 34.0 2.4 33 39-71 120-154 (307)
30 PRK14824 putative deoxyribonuc 72.7 18 0.0004 27.1 6.5 51 38-95 1-57 (201)
31 cd00494 HMBS Hydroxymethylbila 69.9 5.1 0.00011 31.9 3.1 32 40-71 118-151 (292)
32 PF01379 Porphobil_deam: Porph 69.0 4.5 9.8E-05 30.9 2.5 26 39-64 120-145 (215)
33 PRK14823 putative deoxyribonuc 67.8 32 0.00068 25.5 6.7 51 38-95 1-59 (191)
34 PRK14821 putative deoxyribonuc 66.6 39 0.00084 24.8 7.0 52 38-95 1-56 (184)
35 PRK00072 hemC porphobilinogen 66.0 6.9 0.00015 31.3 3.1 32 40-71 122-155 (295)
36 COG0041 PurE Phosphoribosylcar 64.7 10 0.00022 28.1 3.5 28 38-65 5-37 (162)
37 TIGR00212 hemC porphobilinogen 63.5 8.2 0.00018 30.8 3.1 32 40-71 118-151 (292)
38 PRK01066 porphobilinogen deami 61.2 9 0.0002 29.7 2.9 33 39-71 132-166 (231)
39 PRK00120 dITP/XTP pyrophosphat 59.2 54 0.0012 24.3 6.7 54 38-95 1-59 (196)
40 PLN02691 porphobilinogen deami 58.5 11 0.00024 30.9 3.1 33 39-71 164-198 (351)
41 PRK14822 nucleoside-triphospha 56.2 73 0.0016 23.8 7.0 53 39-95 3-61 (200)
42 cd00515 HAM1 NTPase/HAM1. Thi 54.1 51 0.0011 24.1 5.7 49 40-95 1-55 (183)
43 cd04911 ACT_AKiii-YclM-BS_1 AC 53.6 13 0.00028 24.0 2.2 19 51-69 23-41 (76)
44 PRK02491 putative deoxyribonuc 53.1 33 0.00071 27.9 4.9 55 37-95 127-187 (328)
45 PF06574 FAD_syn: FAD syntheta 52.9 22 0.00047 25.4 3.5 39 43-83 61-99 (157)
46 PRK08238 hypothetical protein; 51.7 36 0.00078 28.6 5.1 34 35-69 86-122 (479)
47 TIGR00042 non-canonical purine 51.5 83 0.0018 23.1 6.5 53 39-95 1-56 (184)
48 TIGR01664 DNA-3'-Pase DNA 3'-p 48.5 70 0.0015 22.6 5.6 32 35-66 56-102 (166)
49 PRK14826 putative deoxyribonuc 48.4 1.1E+02 0.0023 23.3 6.9 55 35-96 6-71 (222)
50 PF00107 ADH_zinc_N: Zinc-bind 48.1 36 0.00078 22.0 3.8 29 38-66 15-43 (130)
51 cd06532 Glyco_transf_25 Glycos 46.9 86 0.0019 21.0 5.9 51 40-90 5-75 (128)
52 cd03027 GRX_DEP Glutaredoxin ( 43.2 27 0.00059 20.8 2.5 22 46-69 14-35 (73)
53 TIGR02194 GlrX_NrdH Glutaredox 43.1 28 0.0006 20.9 2.5 21 47-69 13-33 (72)
54 cd03054 GST_N_Metaxin GST_N fa 42.0 47 0.001 19.5 3.4 30 40-69 10-42 (72)
55 PF08373 RAP: RAP domain; Int 40.6 29 0.00063 20.0 2.2 21 44-64 18-38 (58)
56 PF07131 DUF1382: Protein of u 37.8 15 0.00032 23.1 0.6 22 51-72 17-38 (61)
57 PF01725 Ham1p_like: Ham1 fami 37.4 42 0.00091 24.6 3.1 49 40-95 1-59 (189)
58 PRK11590 hypothetical protein; 36.5 36 0.00078 24.6 2.6 34 36-69 111-148 (211)
59 PF04405 ScdA_N: Domain of Unk 35.5 18 0.0004 21.8 0.8 43 43-85 9-53 (56)
60 PF00673 Ribosomal_L5_C: ribos 35.0 25 0.00053 23.2 1.4 34 21-60 60-94 (95)
61 TIGR02190 GlrX-dom Glutaredoxi 34.9 39 0.00085 20.7 2.3 18 47-64 22-39 (79)
62 TIGR00083 ribF riboflavin kina 34.1 62 0.0013 25.5 3.7 39 45-85 55-93 (288)
63 cd03041 GST_N_2GST_N GST_N fam 34.1 93 0.002 18.7 3.9 22 44-65 8-32 (77)
64 TIGR01548 HAD-SF-IA-hyp1 haloa 33.3 1.3E+02 0.0029 21.0 5.1 24 36-59 121-146 (197)
65 cd03035 ArsC_Yffb Arsenate Red 33.1 1.1E+02 0.0024 20.1 4.4 37 44-85 10-46 (105)
66 KOG0415 Predicted peptidyl pro 32.9 72 0.0016 27.0 4.0 70 9-93 151-221 (479)
67 cd03052 GST_N_GDAP1 GST_N fami 32.5 74 0.0016 19.2 3.2 24 44-67 9-33 (73)
68 COG0127 Xanthosine triphosphat 32.5 2.2E+02 0.0047 21.5 6.6 55 38-94 2-60 (194)
69 cd02064 FAD_synthetase_N FAD s 32.5 62 0.0013 23.1 3.2 39 45-85 57-95 (180)
70 TIGR01449 PGP_bact 2-phosphogl 32.1 1.7E+02 0.0037 20.4 5.5 46 36-82 100-149 (213)
71 PF02254 TrkA_N: TrkA-N domain 31.5 1E+02 0.0022 19.6 3.9 29 36-64 88-116 (116)
72 cd03045 GST_N_Delta_Epsilon GS 31.4 85 0.0018 18.2 3.3 20 50-69 16-35 (74)
73 PRK07143 hypothetical protein; 31.4 77 0.0017 24.9 3.8 38 45-84 66-103 (279)
74 cd03036 ArsC_like Arsenate Red 31.3 1.2E+02 0.0027 19.9 4.4 23 47-71 13-35 (111)
75 cd03080 GST_N_Metaxin_like GST 30.4 1.1E+02 0.0023 18.3 3.6 25 43-67 14-41 (75)
76 PRK10329 glutaredoxin-like pro 30.4 50 0.0011 20.7 2.2 17 48-64 16-32 (81)
77 cd03051 GST_N_GTT2_like GST_N 30.1 80 0.0017 18.0 3.0 24 46-69 11-35 (74)
78 PF00462 Glutaredoxin: Glutare 30.1 38 0.00082 19.4 1.5 21 48-68 14-34 (60)
79 TIGR00365 monothiol glutaredox 29.9 96 0.0021 20.0 3.6 30 37-68 11-50 (97)
80 cd03029 GRX_hybridPRX5 Glutare 29.1 67 0.0015 18.9 2.6 17 48-64 16-32 (72)
81 TIGR02189 GlrX-like_plant Glut 28.8 66 0.0014 20.9 2.7 20 47-66 22-41 (99)
82 TIGR01990 bPGM beta-phosphoglu 28.6 1.6E+02 0.0035 19.9 4.8 46 36-82 102-149 (185)
83 PLN02473 glutathione S-transfe 28.3 73 0.0016 22.5 3.0 25 44-68 11-36 (214)
84 cd03077 GST_N_Alpha GST_N fami 27.8 68 0.0015 19.5 2.5 23 45-67 11-34 (79)
85 PF00925 GTP_cyclohydro2: GTP 27.2 89 0.0019 22.4 3.3 25 37-61 140-164 (169)
86 PRK05627 bifunctional riboflav 27.2 83 0.0018 24.9 3.4 35 47-83 73-107 (305)
87 cd03047 GST_N_2 GST_N family, 26.9 1.1E+02 0.0024 17.9 3.3 24 44-67 9-33 (73)
88 cd02977 ArsC_family Arsenate R 26.8 1.6E+02 0.0035 18.8 4.2 21 49-71 15-35 (105)
89 PLN03243 haloacid dehalogenase 26.7 1.8E+02 0.004 22.0 5.1 44 36-80 124-171 (260)
90 cd03050 GST_N_Theta GST_N fami 26.4 1.5E+02 0.0031 17.5 4.0 26 44-69 9-35 (76)
91 PRK10222 PTS system L-ascorbat 25.9 61 0.0013 20.8 2.0 21 50-70 8-28 (85)
92 cd02410 archeal_CPSF_KH The ar 25.5 30 0.00064 25.1 0.5 18 40-57 127-144 (145)
93 COG4073 Uncharacterized protei 25.4 40 0.00088 25.5 1.3 47 39-85 119-177 (198)
94 PF02244 Propep_M14: Carboxype 24.7 63 0.0014 19.4 1.9 26 44-69 43-68 (74)
95 cd00570 GST_N_family Glutathio 23.8 1E+02 0.0022 16.6 2.6 20 50-69 16-35 (71)
96 PRK10725 fructose-1-P/6-phosph 23.4 2.4E+02 0.0053 19.2 4.9 29 37-65 102-134 (188)
97 cd03042 GST_N_Zeta GST_N famil 23.1 1.6E+02 0.0035 16.8 3.7 24 46-69 12-35 (73)
98 COG0637 Predicted phosphatase/ 23.1 90 0.0019 22.9 2.7 28 37-64 102-133 (221)
99 cd03037 GST_N_GRX2 GST_N famil 22.9 1.1E+02 0.0025 17.7 2.7 19 50-68 16-34 (71)
100 TIGR01459 HAD-SF-IIA-hyp4 HAD- 22.7 66 0.0014 23.7 2.0 25 36-60 39-67 (242)
101 TIGR01616 nitro_assoc nitrogen 22.6 1.9E+02 0.004 19.9 4.1 38 43-85 11-48 (126)
102 TIGR01662 HAD-SF-IIIA HAD-supe 22.5 2.3E+02 0.0049 18.4 5.6 28 36-63 40-77 (132)
103 PRK09880 L-idonate 5-dehydroge 22.3 1.3E+02 0.0029 22.9 3.7 26 39-64 196-221 (343)
104 cd03032 ArsC_Spx Arsenate Redu 22.3 1.9E+02 0.004 19.1 4.0 37 44-85 11-47 (115)
105 TIGR01162 purE phosphoribosyla 22.0 1.2E+02 0.0026 22.2 3.1 27 40-66 3-34 (156)
106 PF08557 Lipid_DES: Sphingolip 21.9 55 0.0012 18.7 1.1 11 46-56 16-26 (39)
107 cd03028 GRX_PICOT_like Glutare 21.8 2.2E+02 0.0047 17.8 4.1 29 36-64 6-44 (90)
108 TIGR01684 viral_ppase viral ph 21.5 1.1E+02 0.0025 24.6 3.2 30 36-65 161-194 (301)
109 PRK10824 glutaredoxin-4; Provi 21.0 1.6E+02 0.0035 20.1 3.5 21 47-69 34-54 (115)
110 KOG3307 Molybdopterin converti 20.7 64 0.0014 23.3 1.5 45 12-56 66-113 (150)
111 PF11538 Snurportin1: Snurport 20.3 47 0.001 19.1 0.6 14 42-55 13-26 (40)
112 COG3414 SgaB Phosphotransferas 20.3 80 0.0017 20.9 1.8 22 50-71 23-44 (93)
113 COG0695 GrxC Glutaredoxin and 20.0 1.2E+02 0.0026 18.9 2.5 20 47-66 15-34 (80)
No 1
>PRK14368 Maf-like protein; Provisional
Probab=99.78 E-value=8.9e-19 Score=130.32 Aligned_cols=61 Identities=36% Similarity=0.499 Sum_probs=57.1
Q ss_pred CCCCeEEEccCCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhHhh
Q 034257 35 SSPIKIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKKPSGQDS 95 (100)
Q Consensus 35 ~~~~~iILAS~SPrRkeLL~~lGi~FeVvpsdvDE~~~~~~~p~e~v~~LA~~KA~aV~~~ 95 (100)
+.+.+|||||+||||++||+++|++|+++++++||+..+..+|.++|..+|+.||.++++.
T Consensus 2 ~~~~~lILAS~SprR~eLL~~~g~~f~v~~~~iDE~~~~~~~p~~~v~~lA~~KA~~v~~~ 62 (193)
T PRK14368 2 MANSPIVLASASPRRSELLASAGIEFDVVPADIPEEPLPGEEPVDHVLRLAREKARAAAAL 62 (193)
T ss_pred CCCCcEEEeCCCHHHHHHHHHCCCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 3567899999999999999999999999999999999888899999999999999999764
No 2
>TIGR00172 maf MAF protein. This nonessential gene causes inhibition of septation when overexpressed. A member of the family is found in the Archaeon Pyrococcus horikoshii and another in the round worm Caenorhabditis elegans.
Probab=99.78 E-value=8.1e-19 Score=129.45 Aligned_cols=59 Identities=37% Similarity=0.566 Sum_probs=55.7
Q ss_pred CeEEEccCCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhHhhh
Q 034257 38 IKIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKKPSGQDSK 96 (100)
Q Consensus 38 ~~iILAS~SPrRkeLL~~lGi~FeVvpsdvDE~~~~~~~p~e~v~~LA~~KA~aV~~~~ 96 (100)
++|||||+||||++||+++|++|+++|++|||+..+..+|.+++..+|+.||.++++.+
T Consensus 3 ~~lILAS~SprR~elL~~~g~~f~v~~~~idE~~~~~~~p~~~~~~lA~~Ka~~v~~~~ 61 (183)
T TIGR00172 3 KELILASQSPRRKELLEELGISFEQIVSEFDEKSLKTTSPRELVYRLAKEKAQAVAELL 61 (183)
T ss_pred CCEEEeCCCHHHHHHHHHCCCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 56999999999999999999999999999999998888999999999999999998754
No 3
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=99.77 E-value=8.5e-19 Score=130.98 Aligned_cols=60 Identities=33% Similarity=0.553 Sum_probs=56.6
Q ss_pred CCeEEEccCCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhHhhh
Q 034257 37 PIKIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKKPSGQDSK 96 (100)
Q Consensus 37 ~~~iILAS~SPrRkeLL~~lGi~FeVvpsdvDE~~~~~~~p~e~v~~LA~~KA~aV~~~~ 96 (100)
+++|||||+||||++||+++||+|+++++||||+..+...|.+||++||+.||.+++...
T Consensus 2 ~~~LiLAS~SPrR~elL~~~gi~f~~~~~~iDE~~~~~~~P~~~v~~LA~~KA~~va~~~ 61 (193)
T COG0424 2 MPRLILASSSPRRRELLEQLGIPFEVIPSDIDEPLLKAEEPREYVLRLAEEKARAVAARL 61 (193)
T ss_pred CccEEEecCCHHHHHHHHHCCCCeEEecCCCCCCcccCCCHHHHHHHHHHHHHHHHHHhC
Confidence 468999999999999999999999999999999998887899999999999999998865
No 4
>PRK00234 Maf-like protein; Reviewed
Probab=99.77 E-value=1.4e-18 Score=128.89 Aligned_cols=57 Identities=35% Similarity=0.448 Sum_probs=54.6
Q ss_pred eEEEccCCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhHhh
Q 034257 39 KIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKKPSGQDS 95 (100)
Q Consensus 39 ~iILAS~SPrRkeLL~~lGi~FeVvpsdvDE~~~~~~~p~e~v~~LA~~KA~aV~~~ 95 (100)
+|||||+||||++||+++|++|++++++|||+..+..+|.+||..+|+.||.++++.
T Consensus 3 ~iILAS~SprR~elL~~~gi~f~v~~~~iDE~~~~~~~p~~~v~~lA~~Ka~~v~~~ 59 (192)
T PRK00234 3 PLLLASSSPYRRELLARLRLPFTWASPDIDESHRPDESAEELVRRLARQKAEALAGS 59 (192)
T ss_pred CEEEecCCHHHHHHHHHCCCCcEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 699999999999999999999999999999999888899999999999999999764
No 5
>PRK02141 Maf-like protein; Reviewed
Probab=99.76 E-value=2.1e-18 Score=129.55 Aligned_cols=60 Identities=33% Similarity=0.511 Sum_probs=56.5
Q ss_pred CCeEEEccCCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhHhhh
Q 034257 37 PIKIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKKPSGQDSK 96 (100)
Q Consensus 37 ~~~iILAS~SPrRkeLL~~lGi~FeVvpsdvDE~~~~~~~p~e~v~~LA~~KA~aV~~~~ 96 (100)
+.+|||||+||||++||+++|++|++++++|||+..+..+|.+++..+|+.||.++++.+
T Consensus 8 ~~~iILAS~SprR~elL~~~G~~f~v~~~~iDE~~~~~~~p~~~~~~lA~~KA~~v~~~l 67 (207)
T PRK02141 8 PPRLILASSSRYRRELLERLRLPFDVVSPDIDETPLAGETPAATALRLAAAKARAVAATI 67 (207)
T ss_pred CCCEEEeCCCHHHHHHHHHCCCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 577999999999999999999999999999999998888999999999999999998743
No 6
>PRK04056 Maf-like protein; Reviewed
Probab=99.76 E-value=1.9e-18 Score=127.25 Aligned_cols=58 Identities=34% Similarity=0.454 Sum_probs=54.9
Q ss_pred eEEEccCCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhHhhh
Q 034257 39 KIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKKPSGQDSK 96 (100)
Q Consensus 39 ~iILAS~SPrRkeLL~~lGi~FeVvpsdvDE~~~~~~~p~e~v~~LA~~KA~aV~~~~ 96 (100)
+|||||+||||++||+++|++|+++++++||+..+..+|.++|..+|+.||.++++.+
T Consensus 1 ~iILAS~SprR~elL~~~g~~f~v~~~~idE~~~~~~~p~~~v~~lA~~Ka~~v~~~~ 58 (180)
T PRK04056 1 MIILASSSSTRANLLKEAGIEFEQKSLDFDEESIKKTSPKEFVYLAVKGKLEQFLKKY 58 (180)
T ss_pred CEEEeCCCHHHHHHHHHCCCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 4899999999999999999999999999999998888999999999999999998754
No 7
>PRK00148 Maf-like protein; Reviewed
Probab=99.76 E-value=2.3e-18 Score=127.99 Aligned_cols=58 Identities=34% Similarity=0.470 Sum_probs=55.1
Q ss_pred CeEEEccCCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhHhh
Q 034257 38 IKIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKKPSGQDS 95 (100)
Q Consensus 38 ~~iILAS~SPrRkeLL~~lGi~FeVvpsdvDE~~~~~~~p~e~v~~LA~~KA~aV~~~ 95 (100)
++|||||+||||++||+++|++|++++++|||+..+..+|.++|..+|+.||.+++++
T Consensus 1 ~~iILAS~SprR~elL~~~g~~f~~~~~~idE~~~~~~~p~~~v~~lA~~KA~~v~~~ 58 (194)
T PRK00148 1 TRLVLASASPARLKLLRLAGIPPLVVVSHVDEDAIAASSPSELVQALARAKAEAVAEN 58 (194)
T ss_pred CCEEEeCCCHHHHHHHHHCCCCeEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4699999999999999999999999999999999888899999999999999999875
No 8
>PRK04425 Maf-like protein; Reviewed
Probab=99.76 E-value=2.8e-18 Score=127.90 Aligned_cols=59 Identities=25% Similarity=0.451 Sum_probs=55.8
Q ss_pred CCeEEEccCCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhHhh
Q 034257 37 PIKIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKKPSGQDS 95 (100)
Q Consensus 37 ~~~iILAS~SPrRkeLL~~lGi~FeVvpsdvDE~~~~~~~p~e~v~~LA~~KA~aV~~~ 95 (100)
+++|||||+||||++||+++|++|+++++++||+..+..+|.++|..+|+.||.+++..
T Consensus 4 ~~~iILAS~SprR~elL~~~g~~f~v~~~~iDE~~~~~~~p~~~~~~lA~~KA~~v~~~ 62 (196)
T PRK04425 4 ELPLVLGTSSVFRREQMERLGIAFQAASPDFDETPMLGESAPQTALRLAEGKARSLTGR 62 (196)
T ss_pred CCcEEEeCCCHHHHHHHHHCCCCeEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 37899999999999999999999999999999999888999999999999999998764
No 9
>PRK00032 Maf-like protein; Reviewed
Probab=99.75 E-value=2.8e-18 Score=127.32 Aligned_cols=57 Identities=28% Similarity=0.440 Sum_probs=54.5
Q ss_pred eEEEccCCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhHhh
Q 034257 39 KIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKKPSGQDS 95 (100)
Q Consensus 39 ~iILAS~SPrRkeLL~~lGi~FeVvpsdvDE~~~~~~~p~e~v~~LA~~KA~aV~~~ 95 (100)
+|||||+||||++||+++|++|+++|+++||+..+..+|.+++..+|+.||.+++..
T Consensus 3 ~iILAS~SprR~elL~~~g~~f~v~~~~idE~~~~~~~p~~~v~~lA~~KA~~v~~~ 59 (190)
T PRK00032 3 SLYLASGSPRRRELLTQLGVPFEVLVPGIEEQRQPGESAQQYVERLARDKAQAGVAL 59 (190)
T ss_pred CEEEeCCCHHHHHHHHHCCCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 599999999999999999999999999999999888899999999999999999775
No 10
>PRK00884 Maf-like protein; Reviewed
Probab=99.75 E-value=2.8e-18 Score=127.74 Aligned_cols=58 Identities=29% Similarity=0.444 Sum_probs=54.9
Q ss_pred CeEEEccCCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhHhh
Q 034257 38 IKIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKKPSGQDS 95 (100)
Q Consensus 38 ~~iILAS~SPrRkeLL~~lGi~FeVvpsdvDE~~~~~~~p~e~v~~LA~~KA~aV~~~ 95 (100)
.+|||||+||||++||+++|++|+++++++||+..+..+|.++|..+|+.||.++++.
T Consensus 2 ~~iILAS~SprR~elL~~~g~~f~v~~~~idE~~~~~~~p~~~v~~lA~~KA~~v~~~ 59 (194)
T PRK00884 2 PQLILASTSPYRRALLEKLQLPFECAAPEVDETPRPGESPRQLVLRLAQEKAQSLASR 59 (194)
T ss_pred CCEEEeCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 3699999999999999999999999999999999888899999999999999999775
No 11
>PRK00078 Maf-like protein; Reviewed
Probab=99.75 E-value=3.1e-18 Score=127.05 Aligned_cols=59 Identities=39% Similarity=0.509 Sum_probs=54.3
Q ss_pred CeEEEccCCHHHHHHHHhcCCceEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHHhhHhhh
Q 034257 38 IKIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIR-KDKPEDLVMALAEAKKPSGQDSK 96 (100)
Q Consensus 38 ~~iILAS~SPrRkeLL~~lGi~FeVvpsdvDE~~~~-~~~p~e~v~~LA~~KA~aV~~~~ 96 (100)
|+|||||+||||++||+++|++|+++++++||+... ..+|.+++..+|+.||.++++.+
T Consensus 1 ~~iILAS~SprR~elL~~~g~~f~v~~~~idE~~~~~~~~p~~~~~~lA~~KA~~v~~~~ 60 (192)
T PRK00078 1 MKIILASASERRQELLKRILEDFQVIVSDFDESSVPFKGNIESYVMNLAEGKARSVSKKL 60 (192)
T ss_pred CcEEEeCCCHHHHHHHHhCCCCeEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 579999999999999999999999999999999865 46899999999999999998754
No 12
>PRK04694 Maf-like protein; Reviewed
Probab=99.75 E-value=3.2e-18 Score=126.95 Aligned_cols=58 Identities=22% Similarity=0.344 Sum_probs=54.7
Q ss_pred eEEEccCCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhHhhh
Q 034257 39 KIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKKPSGQDSK 96 (100)
Q Consensus 39 ~iILAS~SPrRkeLL~~lGi~FeVvpsdvDE~~~~~~~p~e~v~~LA~~KA~aV~~~~ 96 (100)
+|||||+||||++||+++|++|+++++|+||+..+..+|.+||.++|..||.++++.+
T Consensus 1 mlILAS~SprR~elL~~~g~~f~~~~~~idE~~~~~~~p~~~v~~lA~~KA~~v~~~~ 58 (190)
T PRK04694 1 MLYLASRSPRRRELLQRLDVPFQTLQLDVPEVRAADESPDHYVQRVALEKAHAGLALV 58 (190)
T ss_pred CEEEcCCCHHHHHHHHHCCCCcEEecCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4899999999999999999999999999999998888999999999999999997754
No 13
>PRK14367 Maf-like protein; Provisional
Probab=99.75 E-value=4.3e-18 Score=127.33 Aligned_cols=57 Identities=33% Similarity=0.477 Sum_probs=54.4
Q ss_pred eEEEccCCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhHhh
Q 034257 39 KIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKKPSGQDS 95 (100)
Q Consensus 39 ~iILAS~SPrRkeLL~~lGi~FeVvpsdvDE~~~~~~~p~e~v~~LA~~KA~aV~~~ 95 (100)
+|||||+||||++||+++|++|+++++++||+..+..+|.++|..+|+.||.+++..
T Consensus 3 ~iILAS~SprR~eLL~~~Gi~f~v~~~~iDE~~~~~~~p~~~v~~lA~~KA~~v~~~ 59 (202)
T PRK14367 3 TLYLGSNSPRRMEILTQLGYRVVKLPAGIDETVKAGETPARYVQRMAEEKNRTALTL 59 (202)
T ss_pred CEEEeCCCHHHHHHHHHCCCCeEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 699999999999999999999999999999999888899999999999999999764
No 14
>cd00555 Maf Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or nucleic acid-binding protein with structural similarity to the hypoxanthine/xanthine NTP pyrophosphatase Ham1 from Methanococcus jannaschii, RNase H from Escherichia coli, and some other nucleotide or RNA-binding proteins.
Probab=99.74 E-value=5.4e-18 Score=124.54 Aligned_cols=57 Identities=42% Similarity=0.652 Sum_probs=54.6
Q ss_pred EEEccCCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhHhhh
Q 034257 40 IILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKKPSGQDSK 96 (100)
Q Consensus 40 iILAS~SPrRkeLL~~lGi~FeVvpsdvDE~~~~~~~p~e~v~~LA~~KA~aV~~~~ 96 (100)
|||||+||||++||+++|++|+++++++||+.++..+|.++|..+|+.||.++.+.+
T Consensus 1 iILaS~SprR~elL~~~g~~f~~~~~~iDE~~~~~~~p~~~v~~lA~~Ka~~v~~~~ 57 (180)
T cd00555 1 LILASASPRRRELLEQLGIPFEVVPSDIDETPIKGESPEDYVLRLAEAKAEAVAARL 57 (180)
T ss_pred CEECCCCHHHHHHHHhCCCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 699999999999999999999999999999999989999999999999999998764
No 15
>PRK02478 Maf-like protein; Reviewed
Probab=99.74 E-value=7.4e-18 Score=125.73 Aligned_cols=58 Identities=38% Similarity=0.621 Sum_probs=53.2
Q ss_pred CeEEEccCCHHHHHHHHhcCCceEEEeCCCCCCCCC------CCCHHHHHHHHHHHHHHhhHhh
Q 034257 38 IKIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIR------KDKPEDLVMALAEAKKPSGQDS 95 (100)
Q Consensus 38 ~~iILAS~SPrRkeLL~~lGi~FeVvpsdvDE~~~~------~~~p~e~v~~LA~~KA~aV~~~ 95 (100)
++|||||+||||+|||+++|++|+++++++||+.+. +.+|.++|..+|+.||.+++..
T Consensus 3 ~~iILAS~SprR~elL~~~g~~f~v~~~~idE~~~~~~~~~~~~~p~~~v~~lA~~Ka~~v~~~ 66 (199)
T PRK02478 3 VKLILASKSPFRRALLENAGLEFSAAAADIDERAVEAPLEESGATPEDVALVLAEAKAIDVSER 66 (199)
T ss_pred CcEEEeCCCHHHHHHHHHCCCCeEEecCCCCCCccccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999999999998754 3689999999999999999875
No 16
>PRK14366 Maf-like protein; Provisional
Probab=99.73 E-value=1.1e-17 Score=124.76 Aligned_cols=60 Identities=30% Similarity=0.429 Sum_probs=55.1
Q ss_pred CCCeEEEccCCHHHHHHHHhcCC-ceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhHhh
Q 034257 36 SPIKIILGSSSMARKEILAEMGY-EFTVVTAEIDEKSIRKDKPEDLVMALAEAKKPSGQDS 95 (100)
Q Consensus 36 ~~~~iILAS~SPrRkeLL~~lGi-~FeVvpsdvDE~~~~~~~p~e~v~~LA~~KA~aV~~~ 95 (100)
+..+|||||+||||++||+++|+ .|++++++|||+..+..+|.++|..+|+.||.+++..
T Consensus 3 ~~~~iILAS~SprR~elL~~~G~~~~~v~~~~iDE~~~~~~~p~~~v~~lA~~KA~~v~~~ 63 (195)
T PRK14366 3 KFDNLILASSSKQRLALLEQIGVVPGEIVSPDIDESPLKKELPKDYSIRMAKEKAEKVQSL 63 (195)
T ss_pred CCCeEEEeCCCHHHHHHHHhCCCCCCEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 45579999999999999999999 5699999999999888899999999999999999764
No 17
>PRK01526 Maf-like protein; Reviewed
Probab=99.73 E-value=1.1e-17 Score=125.47 Aligned_cols=61 Identities=31% Similarity=0.353 Sum_probs=55.8
Q ss_pred CCCeEEEccCCHHHHHHHHhcCC-ceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhHhhh
Q 034257 36 SPIKIILGSSSMARKEILAEMGY-EFTVVTAEIDEKSIRKDKPEDLVMALAEAKKPSGQDSK 96 (100)
Q Consensus 36 ~~~~iILAS~SPrRkeLL~~lGi-~FeVvpsdvDE~~~~~~~p~e~v~~LA~~KA~aV~~~~ 96 (100)
+..+|||||+||||++||+++|+ .|+++++||||+.++..+|.++|..+|+.||.+++..+
T Consensus 6 ~~~~lILAS~SprR~elL~~~g~~~~~v~~~~iDE~~~~~~~p~~~v~~lA~~KA~~v~~~~ 67 (205)
T PRK01526 6 KNLPIILASSSPARIELLNRIKIIPSQIIPADIDETPNLRELPAPLAIRLAYEKAIKIASQI 67 (205)
T ss_pred CCCEEEEeCCCHHHHHHHHhcCCCCceEecCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 45789999999999999999999 56799999999998888999999999999999998753
No 18
>PRK01441 Maf-like protein; Reviewed
Probab=99.73 E-value=9.5e-18 Score=125.79 Aligned_cols=60 Identities=30% Similarity=0.437 Sum_probs=55.2
Q ss_pred CCeEEEccCCHHHHHHHHhcCCceE-EEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhHhhh
Q 034257 37 PIKIILGSSSMARKEILAEMGYEFT-VVTAEIDEKSIRKDKPEDLVMALAEAKKPSGQDSK 96 (100)
Q Consensus 37 ~~~iILAS~SPrRkeLL~~lGi~Fe-VvpsdvDE~~~~~~~p~e~v~~LA~~KA~aV~~~~ 96 (100)
+++|||||+||||++||+++|++|. ++|++|||+..+..+|.++|..+|+.||.++++.+
T Consensus 4 ~~~iILAS~SprR~elL~~~Gi~f~~v~~~~iDE~~~~~~~p~~~v~~lA~~Ka~~v~~~~ 64 (207)
T PRK01441 4 RPKLVLASGSPRRVELLNQAGIEPDRLMPADIDETPKRAEHPRSLARRLSREKAEAALEAL 64 (207)
T ss_pred CCcEEEeCCCHHHHHHHHhcCCCCeEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 4679999999999999999999875 78999999998889999999999999999998754
No 19
>PRK00648 Maf-like protein; Reviewed
Probab=99.73 E-value=1.2e-17 Score=123.88 Aligned_cols=58 Identities=36% Similarity=0.437 Sum_probs=54.2
Q ss_pred CeEEEccCCHHHHHHHHhcCCceEEE-eCCCCCCCCCCCCHHHHHHHHHHHHHHhhHhh
Q 034257 38 IKIILGSSSMARKEILAEMGYEFTVV-TAEIDEKSIRKDKPEDLVMALAEAKKPSGQDS 95 (100)
Q Consensus 38 ~~iILAS~SPrRkeLL~~lGi~FeVv-psdvDE~~~~~~~p~e~v~~LA~~KA~aV~~~ 95 (100)
++|||||+||||++||+++|++|+++ ++++||+..+..+|.++|..+|+.||.++++.
T Consensus 3 ~~lILAS~SprR~elL~~~g~~f~v~~~~~~dE~~~~~~~p~~~v~~lA~~Ka~~v~~~ 61 (191)
T PRK00648 3 YKIILASSSPRRKEILEGFRIPFEVVPSPFVEESYPYSLDPEEITLELARLKAEAVRSD 61 (191)
T ss_pred CcEEEeCCCHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 67999999999999999999999999 77899988888899999999999999999774
No 20
>PF02545 Maf: Maf-like protein; InterPro: IPR003697 Maf is a putative inhibitor of septum formation in eukaryotes, bacteria, and archaea. The Maf protein shares substantial amino acid sequence identity with the Escherichia coli OrfE protein [].; GO: 0005737 cytoplasm; PDB: 2P5X_A 1EXC_B 1EX2_A.
Probab=99.73 E-value=4.5e-18 Score=126.36 Aligned_cols=59 Identities=44% Similarity=0.687 Sum_probs=37.4
Q ss_pred CeEEEccCCHHHHHHHHhcCCceEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHHhhHhhh
Q 034257 38 IKIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKD-KPEDLVMALAEAKKPSGQDSK 96 (100)
Q Consensus 38 ~~iILAS~SPrRkeLL~~lGi~FeVvpsdvDE~~~~~~-~p~e~v~~LA~~KA~aV~~~~ 96 (100)
|+|||||+||||++||+++|++|++++++|||+..... +|.++|..+|+.||.++...+
T Consensus 1 M~iILaS~SprR~elL~~~g~~f~v~~~~~dE~~~~~~~~p~~~v~~lA~~Ka~~~~~~~ 60 (195)
T PF02545_consen 1 MRIILASSSPRRRELLKQLGINFEVIPSDIDEDAIRKESDPEEYVQRLAEAKAEAVVSKL 60 (195)
T ss_dssp --EEE----HHHHHHHHCTT--EEE---------GCCSSSHHHHHHHHHHHHHHHHHHCC
T ss_pred CCEEEeCCCHHHHHHHHHCCCCeEEEcCCCCCCCCccccCHHHHHHHHHHHHHHHHHhhh
Confidence 57999999999999999999999999999999996544 699999999999999966554
No 21
>PRK14363 Maf-like protein; Provisional
Probab=99.72 E-value=1.4e-17 Score=124.93 Aligned_cols=57 Identities=30% Similarity=0.485 Sum_probs=52.8
Q ss_pred CeEEEccCCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhHhhh
Q 034257 38 IKIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKKPSGQDSK 96 (100)
Q Consensus 38 ~~iILAS~SPrRkeLL~~lGi~FeVvpsdvDE~~~~~~~p~e~v~~LA~~KA~aV~~~~ 96 (100)
++|||||+||||++||+++|++|+++|+++||+.. .+|.++|..+|+.||.++.+.+
T Consensus 1 ~~iILAS~SprR~elL~~~G~~f~v~~~~iDE~~~--~~P~~~v~~lA~~KA~~v~~~~ 57 (204)
T PRK14363 1 MRIILASSSPRRRQLMELLGIEFEVEKPDVEEEFL--ESPEETVRELSLRKAEWVFKKR 57 (204)
T ss_pred CcEEEeCCCHHHHHHHHhCCCCeEEEcCCCCCCCC--CCHHHHHHHHHHHHHHHHHHhc
Confidence 46999999999999999999999999999999874 6899999999999999998753
No 22
>PRK14362 Maf-like protein; Provisional
Probab=99.72 E-value=2.4e-17 Score=123.88 Aligned_cols=60 Identities=32% Similarity=0.438 Sum_probs=54.3
Q ss_pred CCeEEEccCCHHHHHHHHhcCCceEEEeCCCCCCC-CCCCCHHHHHHHHHHHHHHhhHhhh
Q 034257 37 PIKIILGSSSMARKEILAEMGYEFTVVTAEIDEKS-IRKDKPEDLVMALAEAKKPSGQDSK 96 (100)
Q Consensus 37 ~~~iILAS~SPrRkeLL~~lGi~FeVvpsdvDE~~-~~~~~p~e~v~~LA~~KA~aV~~~~ 96 (100)
+.+|||||+||||+|||+++|++|+++++++||+. ..+.+|.++|.++|+.||.++++.+
T Consensus 11 ~~~iILAS~SprR~eLL~~~g~~f~v~~~~~dEe~~~~~~~p~~~v~~lA~~KA~~v~~~~ 71 (207)
T PRK14362 11 ACPVVLASGSPRRREFLEQMGLPFEVILPGAAEPSPIEGEQPEAYARRAAEAKARAVAADH 71 (207)
T ss_pred CceEEEeCCCHHHHHHHHHCCCCcEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 46799999999999999999999999999999954 5667899999999999999998753
No 23
>PRK14365 Maf-like protein; Provisional
Probab=99.71 E-value=2.1e-17 Score=123.21 Aligned_cols=57 Identities=30% Similarity=0.410 Sum_probs=54.2
Q ss_pred eEEEccCCHHHHHHHHhc-CCceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhHhh
Q 034257 39 KIILGSSSMARKEILAEM-GYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKKPSGQDS 95 (100)
Q Consensus 39 ~iILAS~SPrRkeLL~~l-Gi~FeVvpsdvDE~~~~~~~p~e~v~~LA~~KA~aV~~~ 95 (100)
+|||||+||||++||+++ |++|+++++++||+..+..+|.+++.++|..||.++++.
T Consensus 3 ~iILaSsSprR~elL~~~~g~~f~vi~~~idE~~~~~~~p~~~v~~lA~~KA~~v~~~ 60 (197)
T PRK14365 3 RIILASASPRRKELLKQLIGDNFLVYPSSYEEPPQPGLDPEELLLKHSLEKARDVAKH 60 (197)
T ss_pred CEEEeCCCHHHHHHHhcCcCcCeEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 699999999999999995 999999999999999988999999999999999999775
No 24
>PRK01839 Maf-like protein; Reviewed
Probab=99.71 E-value=3.1e-17 Score=123.22 Aligned_cols=59 Identities=25% Similarity=0.407 Sum_probs=53.5
Q ss_pred CeEEEccCCHHHHHHHHhcCCceEEEeCCCCCCC------CCCCCHHHHHHHHHHHHHHhhHhhh
Q 034257 38 IKIILGSSSMARKEILAEMGYEFTVVTAEIDEKS------IRKDKPEDLVMALAEAKKPSGQDSK 96 (100)
Q Consensus 38 ~~iILAS~SPrRkeLL~~lGi~FeVvpsdvDE~~------~~~~~p~e~v~~LA~~KA~aV~~~~ 96 (100)
++|||||+||||++||+.+|++|+++++||||+. ..+.+|.+||..+|+.||.++.+.+
T Consensus 10 ~~lILAS~SprR~elL~~~gi~f~v~~~~idE~~~~~~~~~~~~~p~~~v~~lA~~Ka~~v~~~l 74 (209)
T PRK01839 10 PFLYLASQSPRRQELLQQLGVRFELLLPRPDEDAEALEAELPGEAPDDYVQRVCVAKAEAARARL 74 (209)
T ss_pred CCEEEeCCCHHHHHHHHHCCCCeEEeCCCCCcCccccccCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 4599999999999999999999999999999974 3356899999999999999998764
No 25
>PRK14361 Maf-like protein; Provisional
Probab=99.70 E-value=2.8e-17 Score=121.75 Aligned_cols=55 Identities=33% Similarity=0.419 Sum_probs=51.5
Q ss_pred EEEccCCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhHhh
Q 034257 40 IILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKKPSGQDS 95 (100)
Q Consensus 40 iILAS~SPrRkeLL~~lGi~FeVvpsdvDE~~~~~~~p~e~v~~LA~~KA~aV~~~ 95 (100)
|||||+||||++||+++|++|+++++|+||+. ...+|.++|..+|+.||.+++..
T Consensus 1 lILAS~SprR~elL~~~g~~f~v~~~~~dE~~-~~~~p~~~v~~lA~~Ka~~v~~~ 55 (187)
T PRK14361 1 VILASGSPRRRELLENLGVPFQVVVSGEAEDS-TETDPARLAAELALLKARAVARL 55 (187)
T ss_pred CEEccCCHHHHHHHHHCCCCcEEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHh
Confidence 69999999999999999999999999999998 45789999999999999999764
No 26
>PRK14364 Maf-like protein; Provisional
Probab=99.68 E-value=9e-17 Score=118.40 Aligned_cols=54 Identities=30% Similarity=0.412 Sum_probs=51.9
Q ss_pred EccCCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhHhh
Q 034257 42 LGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKKPSGQDS 95 (100)
Q Consensus 42 LAS~SPrRkeLL~~lGi~FeVvpsdvDE~~~~~~~p~e~v~~LA~~KA~aV~~~ 95 (100)
|||+||||++||+++|++|+++|+++||+..+..+|.+||..+|+.||.++++.
T Consensus 1 LAS~SprR~elL~~~g~~f~v~~~~~dE~~~~~~~p~~~~~~lA~~KA~~v~~~ 54 (181)
T PRK14364 1 LASSSPRRRELLQQLGLNFEIYSPDIDESVHEGELVHQYVERLAREKAQAVLNI 54 (181)
T ss_pred CCCCCHHHHHHHHHCCCCeEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999988899999999999999999875
No 27
>KOG1509 consensus Predicted nucleic acid-binding protein ASMTL [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=1.9e-14 Score=108.28 Aligned_cols=63 Identities=37% Similarity=0.471 Sum_probs=59.9
Q ss_pred CCCCeEEEccCCHHHHHHHHhcCCceEEEeCCCCCCCCCC--CCHHHHHHHHHHHHHHhhHhhhh
Q 034257 35 SSPIKIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRK--DKPEDLVMALAEAKKPSGQDSKV 97 (100)
Q Consensus 35 ~~~~~iILAS~SPrRkeLL~~lGi~FeVvpsdvDE~~~~~--~~p~e~v~~LA~~KA~aV~~~~~ 97 (100)
++.++|||||+||||++|++++|++|++++++|+|++++. .+|.+|+..+|++||.+|.+++-
T Consensus 7 ~~~~riiL~S~s~rrk~i~~~~G~~~~~~~S~feEnl~k~~~~~p~~yv~~tA~~KA~~I~erL~ 71 (209)
T KOG1509|consen 7 LKGKRIILASASPRRKQILAEMGLNLEVVVSTFEENLIKSSFETPEDYVVETAKQKAEEIIERLG 71 (209)
T ss_pred hcCcEEEEecCCchHHHHHHHcCCceEEEeccchhhchhhccCCHHHHHHHHHHHHHHHHHHHhh
Confidence 4678999999999999999999999999999999999998 79999999999999999999875
No 28
>cd00985 Maf_Ham1 Maf_Ham1. Maf, a nucleotide binding protein, has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea. A Ham1-related protein from Methanococcus jannaschii is a novel NTPase that has been shown to hydrolyze nonstandard nucleotides, such as hypoxanthine/xanthine NTP, but not standard nucleotides.
Probab=99.43 E-value=4e-13 Score=92.31 Aligned_cols=56 Identities=38% Similarity=0.525 Sum_probs=52.6
Q ss_pred EEEccCCHHHHHHHHhcC-CceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhHhhh
Q 034257 40 IILGSSSMARKEILAEMG-YEFTVVTAEIDEKSIRKDKPEDLVMALAEAKKPSGQDSK 96 (100)
Q Consensus 40 iILAS~SPrRkeLL~~lG-i~FeVvpsdvDE~~~~~~~p~e~v~~LA~~KA~aV~~~~ 96 (100)
|||||+||||+++|+.+| ++|+++++++||+..... |.+++.++|..||.++.+.+
T Consensus 1 iiLaS~s~~R~~~l~~~~~~~~~~~~~~i~E~~~~~~-~~~~~~~~A~~Ka~~~~~~~ 57 (131)
T cd00985 1 LILASGSPRRLEELKQIGGIEFEVLPSDIDETGLKGE-PEDTVEELALLKARAVAERL 57 (131)
T ss_pred CEEecCChHHHHHHHhcCCCCEEEeCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHC
Confidence 699999999999999999 999999999999998777 99999999999999998754
No 29
>COG0181 HemC Porphobilinogen deaminase [Coenzyme metabolism]
Probab=74.91 E-value=2.5 Score=34.04 Aligned_cols=33 Identities=18% Similarity=0.406 Sum_probs=27.6
Q ss_pred eEEEccCCHHHHHHHHhcCCceEEEe--CCCCCCC
Q 034257 39 KIILGSSSMARKEILAEMGYEFTVVT--AEIDEKS 71 (100)
Q Consensus 39 ~iILAS~SPrRkeLL~~lGi~FeVvp--sdvDE~~ 71 (100)
--+.+++|.||+..|+.+..++++.+ -++|-..
T Consensus 120 Ga~VGTSSlRR~aql~~~rPdl~i~~lRGNVdTRL 154 (307)
T COG0181 120 GAVVGTSSLRRQAQLKALRPDLKIEPLRGNVDTRL 154 (307)
T ss_pred CCccccchHHHHHHHHHhCCCCeEEeccCcHHHHH
Confidence 36899999999999999998887776 4777655
No 30
>PRK14824 putative deoxyribonucleotide triphosphate pyrophosphatase; Provisional
Probab=72.70 E-value=18 Score=27.08 Aligned_cols=51 Identities=16% Similarity=0.235 Sum_probs=30.6
Q ss_pred CeEEEccCCHHHHHHHHhc-C-CceEEEeC----CCCCCCCCCCCHHHHHHHHHHHHHHhhHhh
Q 034257 38 IKIILGSSSMARKEILAEM-G-YEFTVVTA----EIDEKSIRKDKPEDLVMALAEAKKPSGQDS 95 (100)
Q Consensus 38 ~~iILAS~SPrRkeLL~~l-G-i~FeVvps----dvDE~~~~~~~p~e~v~~LA~~KA~aV~~~ 95 (100)
|+|++||+-+.-.+-++.+ + +.+++++. +++|+.. +. ...|..||+.+++.
T Consensus 1 m~i~~aT~N~~K~~E~~~iL~~~~i~v~~~~~~~e~~E~~~---tf----~eNA~~KA~~~~~~ 57 (201)
T PRK14824 1 MKILLATTNEGKVREIKRLLSDLGIEVLSPDKKIEVEEDGE---TF----LENAYLKARAYAEF 57 (201)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCCEEEEcCcCCCCCCCCC---CH----HHHHHHHHHHHHHH
Confidence 3699999999987666653 2 33555544 2333322 33 34566788877653
No 31
>cd00494 HMBS Hydroxymethylbilane synthase (HMBS), also known as porphobilinogen deaminase (PBGD), is an intermediate enzyme in the biosynthetic pathway of tetrapyrrolic ring systems, such as heme, chlorophylls, and vitamin B12. HMBS catalyzes the conversion of porphobilinogen (PBG) into hydroxymethylbilane (HMB). HMBS consists of three domains, and is believed to bind substrate through a hinge-bending motion of domains I and II. HMBS is found in all organisms except viruses.
Probab=69.90 E-value=5.1 Score=31.93 Aligned_cols=32 Identities=19% Similarity=0.349 Sum_probs=26.2
Q ss_pred EEEccCCHHHHHHHHhcCCceEEEe--CCCCCCC
Q 034257 40 IILGSSSMARKEILAEMGYEFTVVT--AEIDEKS 71 (100)
Q Consensus 40 iILAS~SPrRkeLL~~lGi~FeVvp--sdvDE~~ 71 (100)
-+.+++|+||+-.|..+..++++++ -+||...
T Consensus 118 a~IGTsS~RR~aql~~~rpdl~~~~iRGNV~TRL 151 (292)
T cd00494 118 SVVGTSSLRRQAQLKRKRPDLKFEPLRGNVDTRL 151 (292)
T ss_pred CEEecCCHHHHHHHHHHCCCCEEEEcCCCHHHHH
Confidence 5889999999999999988887776 3666544
No 32
>PF01379 Porphobil_deam: Porphobilinogen deaminase, dipyromethane cofactor binding domain; InterPro: IPR022417 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. Porphobilinogen deaminase (also known as hydroxymethylbilane synthase, 2.5.1.61 from EC) functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the polymerisation of four PBG molecules into the tetrapyrrole structure, preuroporphyrinogen, with the concomitant release of four molecules of ammonia. This enzyme uses a unique dipyrro-methane cofactor made from two molecules of PBG, which is covalently attached to a cysteine side chain. The tetrapyrrole product is synthesized in an ordered, sequential fashion, by initial attachment of the first pyrrole unit (ring A) to the cofactor, followed by subsequent additions of the remaining pyrrole units (rings B, C, D) to the growing pyrrole chain []. The link between the pyrrole ring and the cofactor is broken once all the pyrroles have been added. This enzyme is folded into three distinct domains that enclose a single, large active site that makes use of an aspartic acid as its one essential catalytic residue, acting as a general acid/base during catalysis [, ]. A deficiency of hydroxymethylbilane synthase is implicated in the neuropathic disease, Acute Intermittent Porphyria (AIP) []. This entry represents the N-terminal domains 1 and 2 of porphobilinogen deaminase, an enzyme involved in tetrapyrrole biosynthesis. The structure of this domain consists of a duplication of two similar intertwined domains with three layers of (a/b/a) each. Porphobilinogen deaminase has a three-domain structure. Domains 1 (N-terminal) and 2 are duplications with the same structure, resembling the transferrins and periplasmic binding proteins. The dipyrromethane cofactor is covalently linked to domain 3 (C-terminal), but is bound by extensive salt-bridges and hydrogen-bonds within the cleft between domains 1 and 2, at a position corresponding to the binding sites for small-molecule ligands in the analogous proteins []. The enzyme has a single catalytic site, and the flexibility between domains is thought to aid elongation of the polypyrrole product in the active-site cleft of the enzyme.; GO: 0033014 tetrapyrrole biosynthetic process; PDB: 1GTK_A 1AH5_A 2YPN_A 1PDA_A 1YPN_A 3EQ1_B 3ECR_A.
Probab=68.98 E-value=4.5 Score=30.89 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=17.4
Q ss_pred eEEEccCCHHHHHHHHhcCCceEEEe
Q 034257 39 KIILGSSSMARKEILAEMGYEFTVVT 64 (100)
Q Consensus 39 ~iILAS~SPrRkeLL~~lGi~FeVvp 64 (100)
.-+.|++|+||+..|..+..++++++
T Consensus 120 ga~IGTsS~RR~aql~~~~pdl~~~~ 145 (215)
T PF01379_consen 120 GARIGTSSLRRRAQLKRLRPDLEVVP 145 (215)
T ss_dssp T-EEE---HHHHHHHHHH-TTSEEE-
T ss_pred ccccCCCCHHHHHHHHHhccCCeEEE
Confidence 47899999999999999987777765
No 33
>PRK14823 putative deoxyribonucleoside-triphosphatase; Provisional
Probab=67.76 E-value=32 Score=25.50 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=31.0
Q ss_pred CeEEEccCCHHHHHHHHh-cCCceEEEeC-------CCCCCCCCCCCHHHHHHHHHHHHHHhhHhh
Q 034257 38 IKIILGSSSMARKEILAE-MGYEFTVVTA-------EIDEKSIRKDKPEDLVMALAEAKKPSGQDS 95 (100)
Q Consensus 38 ~~iILAS~SPrRkeLL~~-lGi~FeVvps-------dvDE~~~~~~~p~e~v~~LA~~KA~aV~~~ 95 (100)
|+|++||+-+.-.+-++. ++-.+++++. +++|+. .+.+ +.|..||+.+++.
T Consensus 1 mki~~aT~N~~K~~E~~~il~~~~~v~~~~~~~~~~~~~E~~---~tf~----enA~~KA~~~~~~ 59 (191)
T PRK14823 1 MKLVFATNNKHKLEEIRSILPEKIELLSLSDIGCHEDIPETA---DTLE----GNALLKAEYVYKK 59 (191)
T ss_pred CEEEEECCChhHHHHHHHHhcCCCEEEehhhcCCCCCCCCCC---CCHH----HHHHHHHHHHHHH
Confidence 369999999988776666 4423555532 333432 2443 3566688877654
No 34
>PRK14821 putative deoxyribonucleotide triphosphate pyrophosphatase; Provisional
Probab=66.59 E-value=39 Score=24.84 Aligned_cols=52 Identities=15% Similarity=0.095 Sum_probs=29.8
Q ss_pred CeEEEccCCHHHHHHHHh-cC-CceEEEeCC--CCCCCCCCCCHHHHHHHHHHHHHHhhHhh
Q 034257 38 IKIILGSSSMARKEILAE-MG-YEFTVVTAE--IDEKSIRKDKPEDLVMALAEAKKPSGQDS 95 (100)
Q Consensus 38 ~~iILAS~SPrRkeLL~~-lG-i~FeVvpsd--vDE~~~~~~~p~e~v~~LA~~KA~aV~~~ 95 (100)
|+|++||+-+...+-++. ++ +.+++.+.+ ++|.. +.+.+ ..|..||..+++.
T Consensus 1 m~i~~aT~N~~K~~E~~~il~~~~i~v~~~~~~~~E~~--~~t~~----enA~~KA~~~~~~ 56 (184)
T PRK14821 1 MKIYFATGNKGKVEEAKIILKPLGIEVEQIKIEYPEIQ--ADTLE----EVAAFGAKWVYNK 56 (184)
T ss_pred CEEEEECCChhHHHHHHHHHhhcCcEEEECCCCCCCCC--CCCHH----HHHHHHHHHHHHH
Confidence 369999999988665555 22 235555543 22221 12443 4566788877654
No 35
>PRK00072 hemC porphobilinogen deaminase; Reviewed
Probab=66.01 E-value=6.9 Score=31.26 Aligned_cols=32 Identities=19% Similarity=0.422 Sum_probs=26.8
Q ss_pred EEEccCCHHHHHHHHhcCCceEEEe--CCCCCCC
Q 034257 40 IILGSSSMARKEILAEMGYEFTVVT--AEIDEKS 71 (100)
Q Consensus 40 iILAS~SPrRkeLL~~lGi~FeVvp--sdvDE~~ 71 (100)
-+.+++|+||+-.|..+..++++++ -++|...
T Consensus 122 a~IGTsS~RR~aql~~~~Pdl~~~~iRGNV~TRL 155 (295)
T PRK00072 122 AVVGTSSLRRQAQLLALRPDLEIKPLRGNVDTRL 155 (295)
T ss_pred CEEecCcHHHHHHHHHHCcCCEEEECccCHHHHH
Confidence 6789999999999999998888887 4666544
No 36
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=64.65 E-value=10 Score=28.07 Aligned_cols=28 Identities=39% Similarity=0.535 Sum_probs=23.1
Q ss_pred CeEEEccCCHHH-----HHHHHhcCCceEEEeC
Q 034257 38 IKIILGSSSMAR-----KEILAEMGYEFTVVTA 65 (100)
Q Consensus 38 ~~iILAS~SPrR-----keLL~~lGi~FeVvps 65 (100)
.-||++|.|-.. -++|+++|++|++...
T Consensus 5 V~IIMGS~SD~~~mk~Aa~~L~~fgi~ye~~Vv 37 (162)
T COG0041 5 VGIIMGSKSDWDTMKKAAEILEEFGVPYEVRVV 37 (162)
T ss_pred EEEEecCcchHHHHHHHHHHHHHcCCCeEEEEE
Confidence 459999999876 5899999999986654
No 37
>TIGR00212 hemC porphobilinogen deaminase. Biosynthesis of cofactors, prosthetic groups, and carriers: Heme and porphyrin
Probab=63.49 E-value=8.2 Score=30.78 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=26.1
Q ss_pred EEEccCCHHHHHHHHhcCCceEEEeC--CCCCCC
Q 034257 40 IILGSSSMARKEILAEMGYEFTVVTA--EIDEKS 71 (100)
Q Consensus 40 iILAS~SPrRkeLL~~lGi~FeVvps--dvDE~~ 71 (100)
-+.+++|+||+-.|..+..+.++++- ++|...
T Consensus 118 a~VGTsS~RR~aql~~~rPdl~i~~iRGNV~TRL 151 (292)
T TIGR00212 118 AKVGTSSLRRKAQLKAIRPDLKIEPLRGNIDTRL 151 (292)
T ss_pred CEeccCCHHHHHHHHHHCCCCEEEECcCCHHHHH
Confidence 68999999999999999888887763 666543
No 38
>PRK01066 porphobilinogen deaminase; Provisional
Probab=61.22 E-value=9 Score=29.71 Aligned_cols=33 Identities=27% Similarity=0.346 Sum_probs=26.7
Q ss_pred eEEEccCCHHHHHHHHhcCCceEEEe--CCCCCCC
Q 034257 39 KIILGSSSMARKEILAEMGYEFTVVT--AEIDEKS 71 (100)
Q Consensus 39 ~iILAS~SPrRkeLL~~lGi~FeVvp--sdvDE~~ 71 (100)
.-+.|.+|+||+-.|..+..++.+++ -++|...
T Consensus 132 ga~IGTSS~RR~aql~~~rPdl~v~~iRGNV~TRL 166 (231)
T PRK01066 132 RPRIGSSSLRREELLKLLFPSGIILDIRGTIEERL 166 (231)
T ss_pred CCEEeCChHHHHHHHHHHCCCCEEEeCcCCHHHHH
Confidence 35889999999999999988887777 3666654
No 39
>PRK00120 dITP/XTP pyrophosphatase; Reviewed
Probab=59.24 E-value=54 Score=24.35 Aligned_cols=54 Identities=20% Similarity=0.248 Sum_probs=29.9
Q ss_pred CeEEEccCCHHHHHHHHhc-C-CceEEEeC-CC--CCCCCCCCCHHHHHHHHHHHHHHhhHhh
Q 034257 38 IKIILGSSSMARKEILAEM-G-YEFTVVTA-EI--DEKSIRKDKPEDLVMALAEAKKPSGQDS 95 (100)
Q Consensus 38 ~~iILAS~SPrRkeLL~~l-G-i~FeVvps-dv--DE~~~~~~~p~e~v~~LA~~KA~aV~~~ 95 (100)
|+|++||+-+...+-++.+ + +.++++.. ++ +|-...+.+.++ .|..||+.+++.
T Consensus 1 m~i~~aT~N~~K~~E~~~il~~~~~~i~~~~~~~~~e~~E~~~s~~e----nA~~KA~~~~~~ 59 (196)
T PRK00120 1 MKIVLASHNAGKLRELKALLAPFGIEVVSQGELGVPEPEETGTTFVE----NALIKARHAAKA 59 (196)
T ss_pred CEEEEEcCCHHHHHHHHHHHhhcCCEEEehhhcCCCCCCCCCCCHHH----HHHHHHHHHHHH
Confidence 4699999999886655552 2 23455443 33 222111235544 456677777654
No 40
>PLN02691 porphobilinogen deaminase
Probab=58.45 E-value=11 Score=30.87 Aligned_cols=33 Identities=15% Similarity=0.297 Sum_probs=26.6
Q ss_pred eEEEccCCHHHHHHHHhcCCceEEEe--CCCCCCC
Q 034257 39 KIILGSSSMARKEILAEMGYEFTVVT--AEIDEKS 71 (100)
Q Consensus 39 ~iILAS~SPrRkeLL~~lGi~FeVvp--sdvDE~~ 71 (100)
.-+.+++|+||+-.|+.+..+.++++ -++|...
T Consensus 164 ga~IGTSS~RR~aql~~~rPdl~v~~iRGNVdTRL 198 (351)
T PLN02691 164 GSVVGTASLRRQSQILHKYPHLKVVNFRGNVQTRL 198 (351)
T ss_pred CCEeccCcHHHHHHHHHHCCCCEEEeccCCHHHHH
Confidence 36899999999999999988877776 3666544
No 41
>PRK14822 nucleoside-triphosphatase; Provisional
Probab=56.21 E-value=73 Score=23.75 Aligned_cols=53 Identities=13% Similarity=0.199 Sum_probs=30.2
Q ss_pred eEEEccCCHHHHHHHHhc-C-CceEEEeC-CCC---CCCCCCCCHHHHHHHHHHHHHHhhHhh
Q 034257 39 KIILGSSSMARKEILAEM-G-YEFTVVTA-EID---EKSIRKDKPEDLVMALAEAKKPSGQDS 95 (100)
Q Consensus 39 ~iILAS~SPrRkeLL~~l-G-i~FeVvps-dvD---E~~~~~~~p~e~v~~LA~~KA~aV~~~ 95 (100)
+|++||+-+...+-++.+ + +.+++++. ++. |-...+.+.+ ..|..||+.+++.
T Consensus 3 ~i~~aT~N~~K~~E~~~iL~~~~~~i~~~~~~~~~~e~~E~g~t~~----enA~~KA~~~~~~ 61 (200)
T PRK14822 3 EIVIATKNKGKVREFKEIFEKFDIEVKSLADFPPIPEVEETGTTFE----ENAILKAEAAAKA 61 (200)
T ss_pred eEEEECCCHHHHHHHHHHHhhcCcEEEEchhcCCCCCCCCCCCCHH----HHHHHHHHHHHHH
Confidence 699999999987666663 2 33555543 221 2111122443 4566688877654
No 42
>cd00515 HAM1 NTPase/HAM1. This family consists of the HAM1 protein and pyrophosphate-releasing xanthosine/ inosine triphosphatase. HAM1 protects the cell against mutagenesis by the base analog 6-N-hydroxylaminopurine (HAP) in E. Coli and S. cerevisiae. A Ham1-related protein from Methanococcus jannaschii is a novel NTPase that has been shown to hydrolyze nonstandard nucleotides such as XTP to XMP and ITP to IMP, but not the standard nucleotides, in the presence of Mg or Mn ions. The enzyme exists as a homodimer. The HAM1 protein may be acting as an NTPase by hydrolyzing the HAP triphosphate.
Probab=54.14 E-value=51 Score=24.06 Aligned_cols=49 Identities=18% Similarity=0.327 Sum_probs=27.3
Q ss_pred EEEccCCHHHHHHHHhc-C-CceEEEeC----CCCCCCCCCCCHHHHHHHHHHHHHHhhHhh
Q 034257 40 IILGSSSMARKEILAEM-G-YEFTVVTA----EIDEKSIRKDKPEDLVMALAEAKKPSGQDS 95 (100)
Q Consensus 40 iILAS~SPrRkeLL~~l-G-i~FeVvps----dvDE~~~~~~~p~e~v~~LA~~KA~aV~~~ 95 (100)
|++||+.+...+-++.+ + +.++++.. +++|... +.++ .|..||+.+++.
T Consensus 1 i~~aT~N~~K~~E~~~il~~~~i~v~~~~~~~~~~E~~~---s~~e----nA~~KA~~a~~~ 55 (183)
T cd00515 1 IVFATGNKGKLKEFKEILAPFGIEVVSLKDIIDIEETGS---TFEE----NALLKARAAAEA 55 (183)
T ss_pred CEEECCCHHHHHHHHHHHhhcCcEEEEcCcCCCCCCCCC---CHHH----HHHHHHHHHHHH
Confidence 57888888776555552 1 23444433 3445442 4443 566687777654
No 43
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=53.65 E-value=13 Score=23.98 Aligned_cols=19 Identities=26% Similarity=0.548 Sum_probs=17.6
Q ss_pred HHHHhcCCceEEEeCCCCC
Q 034257 51 EILAEMGYEFTVVTAEIDE 69 (100)
Q Consensus 51 eLL~~lGi~FeVvpsdvDE 69 (100)
++|+..|++|+-+|+.+|-
T Consensus 23 ~I~E~~~is~Eh~PSGID~ 41 (76)
T cd04911 23 SILEDNGISYEHMPSGIDD 41 (76)
T ss_pred HHHHHcCCCEeeecCCCcc
Confidence 7999999999999999886
No 44
>PRK02491 putative deoxyribonucleotide triphosphate pyrophosphatase/unknown domain fusion protein; Reviewed
Probab=53.12 E-value=33 Score=27.89 Aligned_cols=55 Identities=13% Similarity=0.087 Sum_probs=31.2
Q ss_pred CCeEEEccCCHHHHHHHHh-cC-CceEEEeCC-C---CCCCCCCCCHHHHHHHHHHHHHHhhHhh
Q 034257 37 PIKIILGSSSMARKEILAE-MG-YEFTVVTAE-I---DEKSIRKDKPEDLVMALAEAKKPSGQDS 95 (100)
Q Consensus 37 ~~~iILAS~SPrRkeLL~~-lG-i~FeVvpsd-v---DE~~~~~~~p~e~v~~LA~~KA~aV~~~ 95 (100)
..+|++||+-+.-.+-++. ++ +.+++++.+ + .|-...+.+.+ +.|..||+.+++.
T Consensus 127 ~~kIv~AT~N~~K~~E~~~iL~~~~iev~~l~~~~~~~Ei~Etg~Tf~----ENA~~KA~~aa~~ 187 (328)
T PRK02491 127 GDTILIATRNEGKTKEFRKLFGKLGYKVENLNDYPDLPEVAETGMTFE----ENARLKAETISRL 187 (328)
T ss_pred CCeEEEEcCChhHHHHHHHHHhhcCcEEEehhhcCCCCCcCCCCCCHH----HHHHHHHHHHHHH
Confidence 3579999999988655554 32 335555432 2 22111123443 4566788877664
No 45
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=52.87 E-value=22 Score=25.36 Aligned_cols=39 Identities=23% Similarity=0.391 Sum_probs=27.6
Q ss_pred ccCCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHH
Q 034257 43 GSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMA 83 (100)
Q Consensus 43 AS~SPrRkeLL~~lGi~FeVvpsdvDE~~~~~~~p~e~v~~ 83 (100)
-++-..|.++|+.+|+++.++. +|+++.. ..+|++++..
T Consensus 61 l~s~~ek~~~l~~~Gvd~~~~~-~F~~~~~-~ls~~~Fi~~ 99 (157)
T PF06574_consen 61 LTSLEEKLELLESLGVDYVIVI-PFTEEFA-NLSPEDFIEK 99 (157)
T ss_dssp SS-HHHHHHHHHHTTESEEEEE--CCCHHC-CS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCEEEEe-cchHHHH-cCCHHHHHHH
Confidence 4566789999999999976443 7777643 5789999886
No 46
>PRK08238 hypothetical protein; Validated
Probab=51.72 E-value=36 Score=28.62 Aligned_cols=34 Identities=24% Similarity=0.434 Sum_probs=24.9
Q ss_pred CCCCeEEEccCCHHH--HHHHHhcCCceE-EEeCCCCC
Q 034257 35 SSPIKIILGSSSMAR--KEILAEMGYEFT-VVTAEIDE 69 (100)
Q Consensus 35 ~~~~~iILAS~SPrR--keLL~~lGi~Fe-VvpsdvDE 69 (100)
.+..+++++|+|+++ +.+++.+|+ |+ ++.+|..+
T Consensus 86 ~~G~~v~LaTas~~~~a~~i~~~lGl-Fd~Vigsd~~~ 122 (479)
T PRK08238 86 AAGRKLVLATASDERLAQAVAAHLGL-FDGVFASDGTT 122 (479)
T ss_pred HCCCEEEEEeCCCHHHHHHHHHHcCC-CCEEEeCCCcc
Confidence 356789999999998 678899998 53 44454433
No 47
>TIGR00042 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family. Saccharomyces cerevisiae HAM1 protects against the mutagenic effects of the base analog 6-N-hydroxylaminopurine, which can be a natural product of monooxygenase activity on adenine. Methanococcus jannaschii MJ0226 and E. coli RdgB are also characterized as pyrophosphatases active against non-standard purines NTPs. E. coli RdgB appears to act by intercepting non-canonical deoxyribonucleotide triphosphates from replication precursor pools.
Probab=51.50 E-value=83 Score=23.09 Aligned_cols=53 Identities=9% Similarity=0.041 Sum_probs=29.4
Q ss_pred eEEEccCCHHHHHHHHhc-C-CceEEEe-CCCCCCCCCCCCHHHHHHHHHHHHHHhhHhh
Q 034257 39 KIILGSSSMARKEILAEM-G-YEFTVVT-AEIDEKSIRKDKPEDLVMALAEAKKPSGQDS 95 (100)
Q Consensus 39 ~iILAS~SPrRkeLL~~l-G-i~FeVvp-sdvDE~~~~~~~p~e~v~~LA~~KA~aV~~~ 95 (100)
+|++||+.+...+-++.+ + +.+++++ .+++|....+.+..+ .|..||+.+++.
T Consensus 1 ~i~~aT~N~~K~~E~~~il~~~~~~~~~~~~~~~~ee~g~t~~e----nA~~KA~~~~~~ 56 (184)
T TIGR00042 1 KIVFATGNPGKLKEVQSILSDLGDNEIEQLDLGYPEETGLTFEE----NALLKAKHAAKI 56 (184)
T ss_pred CEEEECCCHHHHHHHHHHHhhcCCEEEecccCCCCCCCCCCHHH----HHHHHHHHHHHH
Confidence 388999999886655552 2 2233333 455432222335544 456677777654
No 48
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=48.47 E-value=70 Score=22.62 Aligned_cols=32 Identities=9% Similarity=0.185 Sum_probs=23.4
Q ss_pred CCCCeEEEccCCHHH--------------HHHHHhcCCce-EEEeCC
Q 034257 35 SSPIKIILGSSSMAR--------------KEILAEMGYEF-TVVTAE 66 (100)
Q Consensus 35 ~~~~~iILAS~SPrR--------------keLL~~lGi~F-eVvpsd 66 (100)
.+.+++.++|+.+.. ..+|+.+|+.+ .++.++
T Consensus 56 ~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~ii~~~ 102 (166)
T TIGR01664 56 DEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVPIQVLAATH 102 (166)
T ss_pred HCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 357789999998763 57899999986 344443
No 49
>PRK14826 putative deoxyribonucleotide triphosphate pyrophosphatase; Provisional
Probab=48.37 E-value=1.1e+02 Score=23.29 Aligned_cols=55 Identities=20% Similarity=0.231 Sum_probs=31.8
Q ss_pred CCCCeEEEccCCHHHHHHHHh-cC-C--ceEEEe-------CCCCCCCCCCCCHHHHHHHHHHHHHHhhHhhh
Q 034257 35 SSPIKIILGSSSMARKEILAE-MG-Y--EFTVVT-------AEIDEKSIRKDKPEDLVMALAEAKKPSGQDSK 96 (100)
Q Consensus 35 ~~~~~iILAS~SPrRkeLL~~-lG-i--~FeVvp-------sdvDE~~~~~~~p~e~v~~LA~~KA~aV~~~~ 96 (100)
....+|++||+-+.-.+-++. ++ + .+++++ .+++|+. .+.+ +.|..||+.+++.+
T Consensus 6 ~~~~~i~~aT~N~~K~~E~~~iL~~~~~~i~v~~~~~~~~~~~~~E~~---~tf~----eNA~~KA~~~~~~~ 71 (222)
T PRK14826 6 TETITIVLATGNRDKVRELRPLLEHISPLFSVRSLADLGVEVDIEETE---ETLE----GNALLKADAIFELL 71 (222)
T ss_pred CCCCEEEEEcCChhHHHHHHHHHHhcCCCeEEEehhHcCCCCCCCCCC---CCHH----HHHHHHHHHHHHHh
Confidence 345789999999987655554 22 2 345554 1233333 2333 35666887776543
No 50
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=48.08 E-value=36 Score=21.95 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=23.1
Q ss_pred CeEEEccCCHHHHHHHHhcCCceEEEeCC
Q 034257 38 IKIILGSSSMARKEILAEMGYEFTVVTAE 66 (100)
Q Consensus 38 ~~iILAS~SPrRkeLL~~lGi~FeVvpsd 66 (100)
.++|....|+.|.++++++|....+...+
T Consensus 15 ~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~ 43 (130)
T PF00107_consen 15 AKVIATDRSEEKLELAKELGADHVIDYSD 43 (130)
T ss_dssp SEEEEEESSHHHHHHHHHTTESEEEETTT
T ss_pred CEEEEEECCHHHHHHHHhhcccccccccc
Confidence 56889999999999999999665554443
No 51
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=46.91 E-value=86 Score=20.98 Aligned_cols=51 Identities=27% Similarity=0.292 Sum_probs=31.8
Q ss_pred EEEccCCHHHHHH---HHhcCCceEEEeC-CCCCCC----------------CCCCCHHHHHHHHHHHHHH
Q 034257 40 IILGSSSMARKEI---LAEMGYEFTVVTA-EIDEKS----------------IRKDKPEDLVMALAEAKKP 90 (100)
Q Consensus 40 iILAS~SPrRkeL---L~~lGi~FeVvps-dvDE~~----------------~~~~~p~e~v~~LA~~KA~ 90 (100)
|=|..+.-||..+ +..+|++|+.+.. |..+.. .....+.++...++..++-
T Consensus 5 InL~~~~~Rr~~~~~~~~~~~~~~~~~~Avd~~~~~~~~~~~~~~~~~~~~~~~~l~~gEiGC~lSH~~~w 75 (128)
T cd06532 5 INLDRSTDRRERMEAQLAALGLDFEFFDAVDGKDLSEEELAALYDALFLPRYGRPLTPGEIGCFLSHYKLW 75 (128)
T ss_pred EECCCCHHHHHHHHHHHHHcCCCeEEEeccccccCCHHHHHHHhHHHhhhhcCCCCChhhHHHHHHHHHHH
Confidence 4566667777766 4458999987763 322211 1225677888888877653
No 52
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=43.24 E-value=27 Score=20.83 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=16.5
Q ss_pred CHHHHHHHHhcCCceEEEeCCCCC
Q 034257 46 SMARKEILAEMGYEFTVVTAEIDE 69 (100)
Q Consensus 46 SPrRkeLL~~lGi~FeVvpsdvDE 69 (100)
+.+=+++|++.|++|+.+ |+++
T Consensus 14 C~ka~~~L~~~gi~~~~~--di~~ 35 (73)
T cd03027 14 CTAVRLFLREKGLPYVEI--NIDI 35 (73)
T ss_pred HHHHHHHHHHCCCceEEE--ECCC
Confidence 345578899999999987 5554
No 53
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=43.13 E-value=28 Score=20.86 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=15.8
Q ss_pred HHHHHHHHhcCCceEEEeCCCCC
Q 034257 47 MARKEILAEMGYEFTVVTAEIDE 69 (100)
Q Consensus 47 PrRkeLL~~lGi~FeVvpsdvDE 69 (100)
.+=+++|++.|++|+.+ |+++
T Consensus 13 ~~ak~~L~~~~i~~~~~--di~~ 33 (72)
T TIGR02194 13 KMTKKALEEHGIAFEEI--NIDE 33 (72)
T ss_pred HHHHHHHHHCCCceEEE--ECCC
Confidence 34467899999999887 5554
No 54
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=41.96 E-value=47 Score=19.52 Aligned_cols=30 Identities=23% Similarity=0.035 Sum_probs=21.1
Q ss_pred EEEccCCHHHH---HHHHhcCCceEEEeCCCCC
Q 034257 40 IILGSSSMARK---EILAEMGYEFTVVTAEIDE 69 (100)
Q Consensus 40 iILAS~SPrRk---eLL~~lGi~FeVvpsdvDE 69 (100)
..|.|-||.-+ -.|+..|++|+++..+.++
T Consensus 10 ~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~ 42 (72)
T cd03054 10 FGLPSLSPECLKVETYLRMAGIPYEVVFSSNPW 42 (72)
T ss_pred CCCCCCCHHHHHHHHHHHhCCCceEEEecCCcc
Confidence 44567777766 3456679999988776654
No 55
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=40.61 E-value=29 Score=20.00 Aligned_cols=21 Identities=19% Similarity=0.425 Sum_probs=16.1
Q ss_pred cCCHHHHHHHHhcCCceEEEe
Q 034257 44 SSSMARKEILAEMGYEFTVVT 64 (100)
Q Consensus 44 S~SPrRkeLL~~lGi~FeVvp 64 (100)
.++--|..+|+.+|+.+..+|
T Consensus 18 g~t~lk~r~L~~~G~~Vi~Ip 38 (58)
T PF08373_consen 18 GSTKLKHRHLKALGYKVISIP 38 (58)
T ss_pred hHHHHHHHHHHHCCCEEEEec
Confidence 667788999999996665544
No 56
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=37.82 E-value=15 Score=23.09 Aligned_cols=22 Identities=27% Similarity=0.375 Sum_probs=18.8
Q ss_pred HHHHhcCCceEEEeCCCCCCCC
Q 034257 51 EILAEMGYEFTVVTAEIDEKSI 72 (100)
Q Consensus 51 eLL~~lGi~FeVvpsdvDE~~~ 72 (100)
..|.+.||.|-.+|...||+..
T Consensus 17 ~~La~~GIRFVpiPv~~dee~~ 38 (61)
T PF07131_consen 17 HSLAHIGIRFVPIPVVTDEEFH 38 (61)
T ss_pred HHHHHcCceeeccccccHHHHH
Confidence 4688999999999998888764
No 57
>PF01725 Ham1p_like: Ham1 family; InterPro: IPR002637 This family contains the Saccharomyces cerevisiae (Baker's yeast) HAM1 protein P47119 from SWISSPROT and other hypothetical archaeal, bacterial and Caenorhabditis elegans proteins. S. cerevisiae HAM1 protects against the mutagenic effects of the base analog 6-N-hydroxylaminopurine (HAP) which can be a natural product of monooxygenase activity on adenine. HAM1 protein protects the cell from HAP, either on the level of deoxynucleoside triphosphate or the DNA level by a yet unidentified set of reactions [].; GO: 0016787 hydrolase activity; PDB: 3TQU_A 1VP2_B 3S86_D 1B78_A 2MJP_B 2Q16_A 2PYU_A 1K7K_A 2ZTI_A 2DVP_A ....
Probab=37.44 E-value=42 Score=24.55 Aligned_cols=49 Identities=18% Similarity=0.268 Sum_probs=24.3
Q ss_pred EEEccCCHHHHHHHHh-cC-CceEEEe--------CCCCCCCCCCCCHHHHHHHHHHHHHHhhHhh
Q 034257 40 IILGSSSMARKEILAE-MG-YEFTVVT--------AEIDEKSIRKDKPEDLVMALAEAKKPSGQDS 95 (100)
Q Consensus 40 iILAS~SPrRkeLL~~-lG-i~FeVvp--------sdvDE~~~~~~~p~e~v~~LA~~KA~aV~~~ 95 (100)
|++||+-+...+-++. ++ +.+++++ .+++|. +.++.+ .|..||+.+++.
T Consensus 1 i~~aT~N~~K~~E~~~~l~~~~i~v~~~~~~~~~~~~~~E~---~~t~~e----nA~~KA~~~~~~ 59 (189)
T PF01725_consen 1 IIFATGNKGKIREIQELLKPLGIEVISLIDLPEPDPEPEET---GETFEE----NALIKAKAAAQQ 59 (189)
T ss_dssp EEEE-S-HHHHHHHHHHCTTTTEEEEECEEECEE------B---SSSHHH----HHHHHHHHHHHH
T ss_pred CEEEcCCHHHHHHHHHHHhhcCCcEEeHHHcCccCcCCCcC---CCCHHH----HHHHHHHHHHHH
Confidence 6788888887665555 32 3344422 344444 335544 456688777654
No 58
>PRK11590 hypothetical protein; Provisional
Probab=36.50 E-value=36 Score=24.62 Aligned_cols=34 Identities=9% Similarity=0.237 Sum_probs=25.3
Q ss_pred CCCeEEEccCCHHH--HHHHHhcCC--ceEEEeCCCCC
Q 034257 36 SPIKIILGSSSMAR--KEILAEMGY--EFTVVTAEIDE 69 (100)
Q Consensus 36 ~~~~iILAS~SPrR--keLL~~lGi--~FeVvpsdvDE 69 (100)
...+++++|+|++. +.++..+|+ -..++..+.+-
T Consensus 111 ~G~~l~IvSas~~~~~~~il~~l~~~~~~~~i~t~l~~ 148 (211)
T PRK11590 111 SDADVWLITGSPQPLVEQVYFDTPWLPRVNLIASQMQR 148 (211)
T ss_pred CCCEEEEEeCCcHHHHHHHHHHccccccCceEEEEEEE
Confidence 46689999999998 778888885 34566666544
No 59
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=35.54 E-value=18 Score=21.85 Aligned_cols=43 Identities=14% Similarity=0.268 Sum_probs=27.5
Q ss_pred ccCCHHHHHHHHhcCCceEEEeC-CCCCCC-CCCCCHHHHHHHHH
Q 034257 43 GSSSMARKEILAEMGYEFTVVTA-EIDEKS-IRKDKPEDLVMALA 85 (100)
Q Consensus 43 AS~SPrRkeLL~~lGi~FeVvps-dvDE~~-~~~~~p~e~v~~LA 85 (100)
+..-|+-..+++.+||+|=+-.. ...|-. ..+.+++++...|.
T Consensus 9 v~~~p~~a~vf~~~gIDfCCgG~~~L~eA~~~~~ld~~~vl~~L~ 53 (56)
T PF04405_consen 9 VAEDPRAARVFRKYGIDFCCGGNRSLEEACEEKGLDPEEVLEELN 53 (56)
T ss_pred HHHChHHHHHHHHcCCcccCCCCchHHHHHHHcCCCHHHHHHHHH
Confidence 45678999999999999966542 223322 12356766666553
No 60
>PF00673 Ribosomal_L5_C: ribosomal L5P family C-terminus; InterPro: IPR002132 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L5, ~180 amino acids in length, is one of the proteins from the large ribosomal subunit. In Escherichia coli, L5 is known to be involved in binding 5S RNA to the large ribosomal subunit. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, , , ], groups: Eubacterial L5. Algal chloroplast L5. Cyanelle L5. Archaebacterial L5. Mammalian L11. Tetrahymena thermophila L21. Dictyostelium discoideum (Slime mold) L5 Saccharomyces cerevisiae (Baker's yeast) L16 (39A). Plant mitochondrial L5. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1IQ4_B 2ZJR_D 2ZJP_D 3PIO_D 3CF5_D 2ZJQ_D 3DLL_D 3PIP_D 2WDL_G 3UZN_G ....
Probab=34.95 E-value=25 Score=23.23 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=25.3
Q ss_pred ccccccccccccCCCCCCeEEEccCCHHHHH-HHHhcCCce
Q 034257 21 GTEFERKRGMARSESSPIKIILGSSSMARKE-ILAEMGYEF 60 (100)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~iILAS~SPrRke-LL~~lGi~F 60 (100)
-.++....||+ ..++--+.++.... ||+.+|++|
T Consensus 60 yd~~~~i~G~~------i~i~t~ak~~~~~~~ll~~~~ipf 94 (95)
T PF00673_consen 60 YDPFPGIFGMD------ITIVTTAKTPKEARLLLKSFGIPF 94 (95)
T ss_dssp STSSSSSSCEE------EEEEESCSSHHHHHHHHHHHHHHB
T ss_pred ccCCCCccceE------EEEEEecCCcHHHHHHHHHhCCcc
Confidence 44555556666 56888889999988 888888876
No 61
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=34.93 E-value=39 Score=20.65 Aligned_cols=18 Identities=33% Similarity=0.593 Sum_probs=14.9
Q ss_pred HHHHHHHHhcCCceEEEe
Q 034257 47 MARKEILAEMGYEFTVVT 64 (100)
Q Consensus 47 PrRkeLL~~lGi~FeVvp 64 (100)
.+=+++|+..|++|+.+.
T Consensus 22 ~~ak~~L~~~gi~y~~id 39 (79)
T TIGR02190 22 AKAKATLKEKGYDFEEIP 39 (79)
T ss_pred HHHHHHHHHcCCCcEEEE
Confidence 456789999999999874
No 62
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=34.10 E-value=62 Score=25.46 Aligned_cols=39 Identities=18% Similarity=0.107 Sum_probs=29.6
Q ss_pred CCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHHH
Q 034257 45 SSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALA 85 (100)
Q Consensus 45 ~SPrRkeLL~~lGi~FeVvpsdvDE~~~~~~~p~e~v~~LA 85 (100)
.-..|.++|+.+|+++-++. +|+|+.. ..+|++++..+-
T Consensus 55 ~~~~k~~~l~~~Gvd~~~~~-~F~~~~a-~ls~e~Fi~~~l 93 (288)
T TIGR00083 55 PLEDKARQLQIKGVEQLLVV-VFDEEFA-NLSALQFIDQLI 93 (288)
T ss_pred CHHHHHHHHHHcCCCEEEEe-CCCHHHH-cCCHHHHHHHHH
Confidence 34789999999999976544 4777553 679999998654
No 63
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=34.08 E-value=93 Score=18.66 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=15.2
Q ss_pred cCCH--HH-HHHHHhcCCceEEEeC
Q 034257 44 SSSM--AR-KEILAEMGYEFTVVTA 65 (100)
Q Consensus 44 S~SP--rR-keLL~~lGi~FeVvps 65 (100)
+.|| +| +..|+..|++|+++..
T Consensus 8 ~~sp~~~kv~~~L~~~gi~y~~~~v 32 (77)
T cd03041 8 EGSPFCRLVREVLTELELDVILYPC 32 (77)
T ss_pred CCCchHHHHHHHHHHcCCcEEEEEC
Confidence 3454 56 3468889999988743
No 64
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=33.28 E-value=1.3e+02 Score=21.02 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=19.8
Q ss_pred CCCeEEEccCCHHH--HHHHHhcCCc
Q 034257 36 SPIKIILGSSSMAR--KEILAEMGYE 59 (100)
Q Consensus 36 ~~~~iILAS~SPrR--keLL~~lGi~ 59 (100)
...++.++|++++. ..+|+.+|+.
T Consensus 121 ~g~~~~i~T~~~~~~~~~~l~~~gl~ 146 (197)
T TIGR01548 121 APKGMAVVTGRPRKDAAKFLTTHGLE 146 (197)
T ss_pred cCCcEEEECCCCHHHHHHHHHHcCch
Confidence 35789999999887 6788999985
No 65
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=33.09 E-value=1.1e+02 Score=20.13 Aligned_cols=37 Identities=16% Similarity=0.225 Sum_probs=23.6
Q ss_pred cCCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHHH
Q 034257 44 SSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALA 85 (100)
Q Consensus 44 S~SPrRkeLL~~lGi~FeVvpsdvDE~~~~~~~p~e~v~~LA 85 (100)
|+|-+=+++|+..|++|+++ |+.++.. +.+++...++
T Consensus 10 ~~crka~~~L~~~~i~~~~~--di~~~p~---s~~eL~~~l~ 46 (105)
T cd03035 10 DTVKKARKWLEARGVAYTFH--DYRKDGL---DAATLERWLA 46 (105)
T ss_pred HHHHHHHHHHHHcCCCeEEE--ecccCCC---CHHHHHHHHH
Confidence 44445567899999999988 5655543 3444444443
No 66
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=32.90 E-value=72 Score=26.96 Aligned_cols=70 Identities=17% Similarity=0.268 Sum_probs=50.0
Q ss_pred hhhcceecccccccccccccccccCCCCCCeEEEccCCHHHHHHHH-hcCCceEEEeCCCCCCCCCCCCHHHHHHHHHHH
Q 034257 9 FRTAHLQTTLESGTEFERKRGMARSESSPIKIILGSSSMARKEILA-EMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEA 87 (100)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iILAS~SPrRkeLL~-~lGi~FeVvpsdvDE~~~~~~~p~e~v~~LA~~ 87 (100)
|+--.|.-|+----||.-|+++.-| +-|-||.+.+|-. .+++ +-||+...+.+.+++...+++.
T Consensus 151 ykdIRI~HTiiLdDPFddpp~l~~p--------~rspsPt~e~l~~g~i~~-------de~~d~~~g~saeel~e~~~e~ 215 (479)
T KOG0415|consen 151 YKDIRIKHTIILDDPFDDPPDLAEP--------MRSPSPTPEQLVKGRIRL-------DEDEDDDEGLSAEELEEVLAEK 215 (479)
T ss_pred ccceeeeeeEEecCCCCCchhhccC--------CCCCCCCHHHhhcccccc-------CcccccccccCHHHHHHHHHHH
Confidence 5566788888889999999999854 3578999877766 2443 3445555667888888888876
Q ss_pred HHHhhH
Q 034257 88 KKPSGQ 93 (100)
Q Consensus 88 KA~aV~ 93 (100)
-|.+-+
T Consensus 216 ea~~~A 221 (479)
T KOG0415|consen 216 EAKAQA 221 (479)
T ss_pred HHHhhH
Confidence 555433
No 67
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=32.54 E-value=74 Score=19.16 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=16.2
Q ss_pred cCCHHHHH-HHHhcCCceEEEeCCC
Q 034257 44 SSSMARKE-ILAEMGYEFTVVTAEI 67 (100)
Q Consensus 44 S~SPrRke-LL~~lGi~FeVvpsdv 67 (100)
|.+.+|-. +|+..|++|+.+..+.
T Consensus 9 s~~s~rv~~~L~e~gl~~e~~~v~~ 33 (73)
T cd03052 9 SFSSQKVRLVIAEKGLRCEEYDVSL 33 (73)
T ss_pred CccHHHHHHHHHHcCCCCEEEEecC
Confidence 33345644 4777999999887655
No 68
>COG0127 Xanthosine triphosphate pyrophosphatase [Nucleotide transport and metabolism]
Probab=32.54 E-value=2.2e+02 Score=21.46 Aligned_cols=55 Identities=16% Similarity=0.125 Sum_probs=31.1
Q ss_pred CeEEEccCCHHHHHHHHhc----CCceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhHh
Q 034257 38 IKIILGSSSMARKEILAEM----GYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKKPSGQD 94 (100)
Q Consensus 38 ~~iILAS~SPrRkeLL~~l----Gi~FeVvpsdvDE~~~~~~~p~e~v~~LA~~KA~aV~~ 94 (100)
++|++||+=+.-..-++.+ |+++.......+|- .-........+.|..||+.+++
T Consensus 2 ~ki~~AT~N~~K~~E~~~il~~~~~ei~~~~~~~~~~--e~eEtg~tf~enA~~Ka~~~a~ 60 (194)
T COG0127 2 MKIVLATGNKGKLRELKSILAPGGIEIESLKELGVEI--EVEETGLTFEENALLKARAAAK 60 (194)
T ss_pred cEEEEEcCChHHHHHHHHHhcccCceEEEccccCCCC--CccchhhHHHHHHHHHHHHHHh
Confidence 6799999998876655552 34443333222221 1122334455567788888654
No 69
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=32.47 E-value=62 Score=23.11 Aligned_cols=39 Identities=21% Similarity=0.346 Sum_probs=27.3
Q ss_pred CCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHHH
Q 034257 45 SSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALA 85 (100)
Q Consensus 45 ~SPrRkeLL~~lGi~FeVvpsdvDE~~~~~~~p~e~v~~LA 85 (100)
+-..|.++|+.+|++.-++ -+|+|+. ...+|+++...+-
T Consensus 57 ~~e~R~~~l~~l~vd~v~~-~~f~~~~-~~~s~~~Fi~~il 95 (180)
T cd02064 57 TLEEKLELLESLGVDYLLV-LPFDKEF-ASLSAEEFVEDLL 95 (180)
T ss_pred CHHHHHHHHHHcCCCEEEE-eCCCHHH-HcCCHHHHHHHHH
Confidence 3478999999999776433 3677755 3478888877543
No 70
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=32.08 E-value=1.7e+02 Score=20.37 Aligned_cols=46 Identities=22% Similarity=0.430 Sum_probs=27.2
Q ss_pred CCCeEEEccCCHHH--HHHHHhcCCc--eEEEeCCCCCCCCCCCCHHHHHH
Q 034257 36 SPIKIILGSSSMAR--KEILAEMGYE--FTVVTAEIDEKSIRKDKPEDLVM 82 (100)
Q Consensus 36 ~~~~iILAS~SPrR--keLL~~lGi~--FeVvpsdvDE~~~~~~~p~e~v~ 82 (100)
+..++.++|++++. +.+|+.+|+. |..+... ++-.....+|+-+..
T Consensus 100 ~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~-~~~~~~Kp~p~~~~~ 149 (213)
T TIGR01449 100 KGLRLGLVTNKPTPLARPLLELLGLAKYFSVLIGG-DSLAQRKPHPDPLLL 149 (213)
T ss_pred CCCeEEEEeCCCHHHHHHHHHHcCcHhhCcEEEec-CCCCCCCCChHHHHH
Confidence 35789999998765 5678889984 5544332 222223345654444
No 71
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=31.54 E-value=1e+02 Score=19.57 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=23.8
Q ss_pred CCCeEEEccCCHHHHHHHHhcCCceEEEe
Q 034257 36 SPIKIILGSSSMARKEILAEMGYEFTVVT 64 (100)
Q Consensus 36 ~~~~iILAS~SPrRkeLL~~lGi~FeVvp 64 (100)
...+||....++...++|+++|++.-+.|
T Consensus 88 ~~~~ii~~~~~~~~~~~l~~~g~d~vi~P 116 (116)
T PF02254_consen 88 PDIRIIARVNDPENAELLRQAGADHVISP 116 (116)
T ss_dssp TTSEEEEEESSHHHHHHHHHTT-SEEEEH
T ss_pred CCCeEEEEECCHHHHHHHHHCCcCEEECc
Confidence 35789999999999999999999877654
No 72
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=31.40 E-value=85 Score=18.19 Aligned_cols=20 Identities=10% Similarity=0.175 Sum_probs=14.6
Q ss_pred HHHHHhcCCceEEEeCCCCC
Q 034257 50 KEILAEMGYEFTVVTAEIDE 69 (100)
Q Consensus 50 keLL~~lGi~FeVvpsdvDE 69 (100)
+-+|+..|++|+.+..+..+
T Consensus 16 ~~~l~~~gi~~e~~~i~~~~ 35 (74)
T cd03045 16 LLTAKALGLELNLKEVNLMK 35 (74)
T ss_pred HHHHHHcCCCCEEEEecCcc
Confidence 34688899999988666533
No 73
>PRK07143 hypothetical protein; Provisional
Probab=31.36 E-value=77 Score=24.87 Aligned_cols=38 Identities=18% Similarity=0.367 Sum_probs=28.3
Q ss_pred CCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHH
Q 034257 45 SSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMAL 84 (100)
Q Consensus 45 ~SPrRkeLL~~lGi~FeVvpsdvDE~~~~~~~p~e~v~~L 84 (100)
.-..|.++|+.+|+++.++ -+|+++. ...+|++++..+
T Consensus 66 ~~~er~~~l~~~Gvd~~~~-~~F~~~~-a~ls~e~Fi~~l 103 (279)
T PRK07143 66 DLNSRLQTLANLGFKNIIL-LDFNEEL-QNLSGNDFIEKL 103 (279)
T ss_pred CHHHHHHHHHHCCCCEEEE-eCCCHHH-hCCCHHHHHHHH
Confidence 3357999999999987544 4577655 367899998865
No 74
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=31.30 E-value=1.2e+02 Score=19.88 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=16.5
Q ss_pred HHHHHHHHhcCCceEEEeCCCCCCC
Q 034257 47 MARKEILAEMGYEFTVVTAEIDEKS 71 (100)
Q Consensus 47 PrRkeLL~~lGi~FeVvpsdvDE~~ 71 (100)
-+=+++|+..|++|+.+ |+.++.
T Consensus 13 ~ka~~~L~~~~i~~~~i--di~~~~ 35 (111)
T cd03036 13 RKAKKWLDEHGVDYTAI--DIVEEP 35 (111)
T ss_pred HHHHHHHHHcCCceEEe--cccCCc
Confidence 34468899999999888 454443
No 75
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=30.41 E-value=1.1e+02 Score=18.27 Aligned_cols=25 Identities=16% Similarity=0.004 Sum_probs=16.9
Q ss_pred ccCCHHHH---HHHHhcCCceEEEeCCC
Q 034257 43 GSSSMARK---EILAEMGYEFTVVTAEI 67 (100)
Q Consensus 43 AS~SPrRk---eLL~~lGi~FeVvpsdv 67 (100)
.|-||... -.|+..|++|+.+..+.
T Consensus 14 ~~~sp~~~~v~~~L~~~gi~~~~~~~~~ 41 (75)
T cd03080 14 PSLSPFCLKVETFLRMAGIPYENKFGGL 41 (75)
T ss_pred CCCCHHHHHHHHHHHHCCCCcEEeecCc
Confidence 46677544 35677899999876554
No 76
>PRK10329 glutaredoxin-like protein; Provisional
Probab=30.38 E-value=50 Score=20.70 Aligned_cols=17 Identities=24% Similarity=0.644 Sum_probs=13.8
Q ss_pred HHHHHHHhcCCceEEEe
Q 034257 48 ARKEILAEMGYEFTVVT 64 (100)
Q Consensus 48 rRkeLL~~lGi~FeVvp 64 (100)
+=+++|++.||+|+.+.
T Consensus 16 ~ak~~L~~~gI~~~~id 32 (81)
T PRK10329 16 ATKRAMESRGFDFEMIN 32 (81)
T ss_pred HHHHHHHHCCCceEEEE
Confidence 44788999999998873
No 77
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=30.10 E-value=80 Score=18.02 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=16.6
Q ss_pred CHHH-HHHHHhcCCceEEEeCCCCC
Q 034257 46 SMAR-KEILAEMGYEFTVVTAEIDE 69 (100)
Q Consensus 46 SPrR-keLL~~lGi~FeVvpsdvDE 69 (100)
..+| +-+|...|++|+.+..++.+
T Consensus 11 ~~~~~~~~L~~~~l~~~~~~v~~~~ 35 (74)
T cd03051 11 NPRRVRIFLAEKGIDVPLVTVDLAA 35 (74)
T ss_pred chHHHHHHHHHcCCCceEEEeeccc
Confidence 3444 55678899999888766543
No 78
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=30.09 E-value=38 Score=19.38 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=15.8
Q ss_pred HHHHHHHhcCCceEEEeCCCC
Q 034257 48 ARKEILAEMGYEFTVVTAEID 68 (100)
Q Consensus 48 rRkeLL~~lGi~FeVvpsdvD 68 (100)
+=+++|+..|++|+.+.-+-|
T Consensus 14 ~~~~~L~~~~i~y~~~dv~~~ 34 (60)
T PF00462_consen 14 KAKEFLDEKGIPYEEVDVDED 34 (60)
T ss_dssp HHHHHHHHTTBEEEEEEGGGS
T ss_pred HHHHHHHHcCCeeeEcccccc
Confidence 346889999999988854444
No 79
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=29.93 E-value=96 Score=20.01 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=21.5
Q ss_pred CCeEEEccC-------CH---HHHHHHHhcCCceEEEeCCCC
Q 034257 37 PIKIILGSS-------SM---ARKEILAEMGYEFTVVTAEID 68 (100)
Q Consensus 37 ~~~iILAS~-------SP---rRkeLL~~lGi~FeVvpsdvD 68 (100)
+.++++=|. -| +=+++|..+|++|+.+ |++
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~--di~ 50 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYV--NVL 50 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEE--ECC
Confidence 445666554 34 7789999999999876 444
No 80
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=29.14 E-value=67 Score=18.94 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=14.0
Q ss_pred HHHHHHHhcCCceEEEe
Q 034257 48 ARKEILAEMGYEFTVVT 64 (100)
Q Consensus 48 rRkeLL~~lGi~FeVvp 64 (100)
+=+++|+..|++|+.+.
T Consensus 16 ~ak~~L~~~~i~~~~~~ 32 (72)
T cd03029 16 RAKAALQENGISYEEIP 32 (72)
T ss_pred HHHHHHHHcCCCcEEEE
Confidence 44789999999998774
No 81
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=28.83 E-value=66 Score=20.89 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=15.4
Q ss_pred HHHHHHHHhcCCceEEEeCC
Q 034257 47 MARKEILAEMGYEFTVVTAE 66 (100)
Q Consensus 47 PrRkeLL~~lGi~FeVvpsd 66 (100)
-+=+++|..+|++|+++--|
T Consensus 22 ~~ak~~L~~~~i~~~~vdid 41 (99)
T TIGR02189 22 HVVKRLLLTLGVNPAVHEID 41 (99)
T ss_pred HHHHHHHHHcCCCCEEEEcC
Confidence 35678999999999877433
No 82
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=28.62 E-value=1.6e+02 Score=19.90 Aligned_cols=46 Identities=28% Similarity=0.389 Sum_probs=28.7
Q ss_pred CCCeEEEccCCHHHHHHHHhcCCc--eEEEeCCCCCCCCCCCCHHHHHH
Q 034257 36 SPIKIILGSSSMARKEILAEMGYE--FTVVTAEIDEKSIRKDKPEDLVM 82 (100)
Q Consensus 36 ~~~~iILAS~SPrRkeLL~~lGi~--FeVvpsdvDE~~~~~~~p~e~v~ 82 (100)
..+++.++|+++.-..+|+.+|+. |+.+... ++......+|+-|-.
T Consensus 102 ~g~~~~i~s~~~~~~~~l~~~~l~~~f~~~~~~-~~~~~~kp~p~~~~~ 149 (185)
T TIGR01990 102 NNIKIALASASKNAPTVLEKLGLIDYFDAIVDP-AEIKKGKPDPEIFLA 149 (185)
T ss_pred CCCeEEEEeCCccHHHHHHhcCcHhhCcEEEeh-hhcCCCCCChHHHHH
Confidence 467888999887777899999986 6543322 222233445654443
No 83
>PLN02473 glutathione S-transferase
Probab=28.28 E-value=73 Score=22.53 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=17.4
Q ss_pred cCCHHHHHH-HHhcCCceEEEeCCCC
Q 034257 44 SSSMARKEI-LAEMGYEFTVVTAEID 68 (100)
Q Consensus 44 S~SPrRkeL-L~~lGi~FeVvpsdvD 68 (100)
|..++|-.+ |..+|++|+++..+..
T Consensus 11 s~~~~rv~~~L~e~gi~ye~~~v~~~ 36 (214)
T PLN02473 11 AANPQRVLLCFLEKGIEFEVIHVDLD 36 (214)
T ss_pred CCchHHHHHHHHHcCCCceEEEecCc
Confidence 344556555 7779999998876554
No 84
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=27.75 E-value=68 Score=19.54 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=15.5
Q ss_pred CCHHHHH-HHHhcCCceEEEeCCC
Q 034257 45 SSMARKE-ILAEMGYEFTVVTAEI 67 (100)
Q Consensus 45 ~SPrRke-LL~~lGi~FeVvpsdv 67 (100)
++.+|-. +|+.+|++|+.+..+.
T Consensus 11 ~~~~~v~~~l~~~gi~~e~~~v~~ 34 (79)
T cd03077 11 GRMESIRWLLAAAGVEFEEKFIES 34 (79)
T ss_pred ChHHHHHHHHHHcCCCcEEEEecc
Confidence 3444544 4777999999886654
No 85
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=27.17 E-value=89 Score=22.41 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=17.0
Q ss_pred CCeEEEccCCHHHHHHHHhcCCceE
Q 034257 37 PIKIILGSSSMARKEILAEMGYEFT 61 (100)
Q Consensus 37 ~~~iILAS~SPrRkeLL~~lGi~Fe 61 (100)
=.++.|-|++|++..=|+..||+..
T Consensus 140 V~~~rLLtnnp~k~~~L~g~gleV~ 164 (169)
T PF00925_consen 140 VKKMRLLTNNPRKYVALEGFGLEVV 164 (169)
T ss_dssp --SEEEE-S-HHHHHHHHHTT--EE
T ss_pred CCEEEECCCChhHHHHHhcCCCEEE
Confidence 3469999999999999999999863
No 86
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=27.17 E-value=83 Score=24.88 Aligned_cols=35 Identities=29% Similarity=0.495 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHH
Q 034257 47 MARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMA 83 (100)
Q Consensus 47 PrRkeLL~~lGi~FeVvpsdvDE~~~~~~~p~e~v~~ 83 (100)
..|.++|+.+|+++-++ -+|+|+.. ..+|++++..
T Consensus 73 eeR~~~l~~~gVD~~~~-~~F~~~~~-~ls~e~Fi~~ 107 (305)
T PRK05627 73 RDKAELLAELGVDYVLV-LPFDEEFA-KLSAEEFIED 107 (305)
T ss_pred HHHHHHHHHcCCCEEEE-ecCCHHHh-cCCHHHHHHH
Confidence 67999999999887665 56777553 5788888875
No 87
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=26.90 E-value=1.1e+02 Score=17.91 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=15.8
Q ss_pred cCCHHHHH-HHHhcCCceEEEeCCC
Q 034257 44 SSSMARKE-ILAEMGYEFTVVTAEI 67 (100)
Q Consensus 44 S~SPrRke-LL~~lGi~FeVvpsdv 67 (100)
|...+|-. +|+..|++|+++..+.
T Consensus 9 s~~~~~v~~~L~~~~l~~~~~~~~~ 33 (73)
T cd03047 9 SINVQKVLWLLDELGLPYERIDAGG 33 (73)
T ss_pred CcchHHHHHHHHHcCCCCEEEEecc
Confidence 43444544 4677999999876554
No 88
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=26.82 E-value=1.6e+02 Score=18.81 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=15.2
Q ss_pred HHHHHHhcCCceEEEeCCCCCCC
Q 034257 49 RKEILAEMGYEFTVVTAEIDEKS 71 (100)
Q Consensus 49 RkeLL~~lGi~FeVvpsdvDE~~ 71 (100)
=+++|+..|++|+.+ |+.++.
T Consensus 15 a~~~L~~~~i~~~~i--di~~~~ 35 (105)
T cd02977 15 ALAWLEEHGIEYEFI--DYLKEP 35 (105)
T ss_pred HHHHHHHcCCCcEEE--eeccCC
Confidence 367899999999877 444433
No 89
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=26.72 E-value=1.8e+02 Score=22.00 Aligned_cols=44 Identities=30% Similarity=0.430 Sum_probs=27.8
Q ss_pred CCCeEEEccCCHHH--HHHHHhcCCc--eEEEeCCCCCCCCCCCCHHHH
Q 034257 36 SPIKIILGSSSMAR--KEILAEMGYE--FTVVTAEIDEKSIRKDKPEDL 80 (100)
Q Consensus 36 ~~~~iILAS~SPrR--keLL~~lGi~--FeVvpsdvDE~~~~~~~p~e~ 80 (100)
+.+++.++|++++. +.+|+.+|+. |..+... ++......+|+-|
T Consensus 124 ~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~ii~~-~d~~~~KP~Pe~~ 171 (260)
T PLN03243 124 HEIPIAVASTRPRRYLERAIEAVGMEGFFSVVLAA-EDVYRGKPDPEMF 171 (260)
T ss_pred CCCEEEEEeCcCHHHHHHHHHHcCCHhhCcEEEec-ccCCCCCCCHHHH
Confidence 46789999999766 6788999985 6544332 2222334456444
No 90
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=26.37 E-value=1.5e+02 Score=17.46 Aligned_cols=26 Identities=12% Similarity=0.051 Sum_probs=16.9
Q ss_pred cCCHHHH-HHHHhcCCceEEEeCCCCC
Q 034257 44 SSSMARK-EILAEMGYEFTVVTAEIDE 69 (100)
Q Consensus 44 S~SPrRk-eLL~~lGi~FeVvpsdvDE 69 (100)
|.+.||- -.|+..|++|+.+..+..+
T Consensus 9 s~~~~~v~~~l~~~g~~~~~~~v~~~~ 35 (76)
T cd03050 9 SQPSRAVYIFLKLNKIPFEECPIDLRK 35 (76)
T ss_pred ChhHHHHHHHHHHcCCCcEEEEecCCC
Confidence 3444444 3377799999988766543
No 91
>PRK10222 PTS system L-ascorbate-specific transporter subunit IIB; Provisional
Probab=25.85 E-value=61 Score=20.80 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=17.1
Q ss_pred HHHHHhcCCceEEEeCCCCCC
Q 034257 50 KEILAEMGYEFTVVTAEIDEK 70 (100)
Q Consensus 50 keLL~~lGi~FeVvpsdvDE~ 70 (100)
+++|+..||+.++...++-|-
T Consensus 8 k~~L~e~Gi~~~ve~~diss~ 28 (85)
T PRK10222 8 DQFLTQSNIDHTVNSCAVGEY 28 (85)
T ss_pred HHHHHHcCCCeEEEEeehhhc
Confidence 678999999988888777554
No 92
>cd02410 archeal_CPSF_KH The archaeal cleavage and polyadenylation specificity factor (CPSF) contains an N-terminal K homology RNA-binding domain (KH). The archeal CPSFs are predicted to be metal-dependent RNases belonging to the beta-CASP family, a subgroup enzymes within the metallo-beta-lactamase fold. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH domains are known to bind single-stranded RNA or DNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=25.48 E-value=30 Score=25.13 Aligned_cols=18 Identities=39% Similarity=0.519 Sum_probs=16.0
Q ss_pred EEEccCCHHHHHHHHhcC
Q 034257 40 IILGSSSMARKEILAEMG 57 (100)
Q Consensus 40 iILAS~SPrRkeLL~~lG 57 (100)
=.|-+.|..|+++|+.+|
T Consensus 127 ~~l~~~~~eR~~~L~~iG 144 (145)
T cd02410 127 RFLRREREERKEILKRIG 144 (145)
T ss_pred HHHHHhHHHHHHHHHHhc
Confidence 467889999999999988
No 93
>COG4073 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.39 E-value=40 Score=25.50 Aligned_cols=47 Identities=23% Similarity=0.323 Sum_probs=27.1
Q ss_pred eEEEccCCHH-HHHHHHh-cCCceEEEeCCCCCCCC----------CCCCHHHHHHHHH
Q 034257 39 KIILGSSSMA-RKEILAE-MGYEFTVVTAEIDEKSI----------RKDKPEDLVMALA 85 (100)
Q Consensus 39 ~iILAS~SPr-RkeLL~~-lGi~FeVvpsdvDE~~~----------~~~~p~e~v~~LA 85 (100)
-++|||-||+ ||+++.. +=+.|++-.-..|+..+ ....-+++..+|-
T Consensus 119 gVLlgSVSP~irkr~~~e~lclT~Eip~~~s~~s~d~v~eiL~~~aes~tReE~ie~Lr 177 (198)
T COG4073 119 GVLLGSVSPRIRKRIFKEDLCLTLEIPRRGSDRSLDVVSEILGLIAESRTREEFIEELR 177 (198)
T ss_pred CeEEeecCHHHHHHhcccceEEEEEecCCCChhHHHHHHHHHHhccccccHHHHHHHHH
Confidence 3899999998 7777774 33345543234444332 1235566666553
No 94
>PF02244 Propep_M14: Carboxypeptidase activation peptide; InterPro: IPR003146 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The peptidases are synthesised as inactive molecules, zymogens, with propeptides that must be removed by proteolytic cleavage to activate the enzyme. Structural studies of carboxypeptidases A and B reveal the propeptide to exist as a globular domain, followed by an extended alpha-helix; this shields the catalytic site, without specifically binding to it, while the substrate-binding site is blocked by making specific contacts [, ]. Members of this propeptide family are found in the metallocarboxypeptidases: A1, A2 [], A3, A4, A5, A6, U, insect gut carboxypeptidase and B [], and and are associated with peptidases belonging to MEROPS peptidase family M14A. Carboxypeptidases are found in abundance in pancreatic secretions. The pro-segment moiety (activation peptide) accounts for up to a quarter of the total length of the peptidase.; GO: 0004180 carboxypeptidase activity, 0006508 proteolysis; PDB: 3D68_C 3D67_B 3D66_A 1PBA_A 3GLJ_A 1NSA_A 1KWM_A 2BOA_B 1PYT_A 1JQG_A ....
Probab=24.66 E-value=63 Score=19.40 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=17.9
Q ss_pred cCCHHHHHHHHhcCCceEEEeCCCCC
Q 034257 44 SSSMARKEILAEMGYEFTVVTAEIDE 69 (100)
Q Consensus 44 S~SPrRkeLL~~lGi~FeVvpsdvDE 69 (100)
+.-..=.++|+..|++|++.-.|+.+
T Consensus 43 ~~~~~f~~~L~~~~i~~~v~i~dvq~ 68 (74)
T PF02244_consen 43 EKLEEFEELLKEHGIEYEVLIEDVQK 68 (74)
T ss_dssp GGHHHHHHHHHHTT-EEEEEES-HHH
T ss_pred HHHHHHHHHHHHCCCcEEEEeHHHHH
Confidence 33345578899999999999887643
No 95
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=23.75 E-value=1e+02 Score=16.59 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=14.6
Q ss_pred HHHHHhcCCceEEEeCCCCC
Q 034257 50 KEILAEMGYEFTVVTAEIDE 69 (100)
Q Consensus 50 keLL~~lGi~FeVvpsdvDE 69 (100)
+.+|+..|++|+.+..+.++
T Consensus 16 ~~~l~~~~i~~~~~~~~~~~ 35 (71)
T cd00570 16 RLALEEKGLPYELVPVDLGE 35 (71)
T ss_pred HHHHHHcCCCcEEEEeCCCC
Confidence 45678899999887665544
No 96
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=23.44 E-value=2.4e+02 Score=19.19 Aligned_cols=29 Identities=28% Similarity=0.487 Sum_probs=21.3
Q ss_pred CCeEEEccCCHHH--HHHHHhcCCc--eEEEeC
Q 034257 37 PIKIILGSSSMAR--KEILAEMGYE--FTVVTA 65 (100)
Q Consensus 37 ~~~iILAS~SPrR--keLL~~lGi~--FeVvps 65 (100)
.+++.++|++++. +..|+.+|+. |+.+..
T Consensus 102 ~~~l~I~T~~~~~~~~~~l~~~~l~~~fd~i~~ 134 (188)
T PRK10725 102 RRPMAVGTGSESAIAEALLAHLGLRRYFDAVVA 134 (188)
T ss_pred CCCEEEEcCCchHHHHHHHHhCCcHhHceEEEe
Confidence 3689999999866 4568889985 665544
No 97
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=23.14 E-value=1.6e+02 Score=16.79 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=16.6
Q ss_pred CHHHHHHHHhcCCceEEEeCCCCC
Q 034257 46 SMARKEILAEMGYEFTVVTAEIDE 69 (100)
Q Consensus 46 SPrRkeLL~~lGi~FeVvpsdvDE 69 (100)
|-+-+-+|+..|++|+.+..++.+
T Consensus 12 ~~~~~~~l~~~gi~~~~~~~~~~~ 35 (73)
T cd03042 12 SYRVRIALNLKGLDYEYVPVNLLK 35 (73)
T ss_pred hHHHHHHHHHcCCCCeEEEecCcc
Confidence 334456677799999988766543
No 98
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=23.06 E-value=90 Score=22.93 Aligned_cols=28 Identities=32% Similarity=0.485 Sum_probs=21.1
Q ss_pred CCeEEEccCCHH--HHHHHHhcCCc--eEEEe
Q 034257 37 PIKIILGSSSMA--RKEILAEMGYE--FTVVT 64 (100)
Q Consensus 37 ~~~iILAS~SPr--RkeLL~~lGi~--FeVvp 64 (100)
..++.++|+|+| -..+|+.+|+. |+.+.
T Consensus 102 ~i~~avaS~s~~~~~~~~L~~~gl~~~f~~~v 133 (221)
T COG0637 102 GIPLAVASSSPRRAAERVLARLGLLDYFDVIV 133 (221)
T ss_pred CCcEEEecCChHHHHHHHHHHccChhhcchhc
Confidence 378999999995 55678889974 66544
No 99
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=22.88 E-value=1.1e+02 Score=17.69 Aligned_cols=19 Identities=11% Similarity=0.045 Sum_probs=13.5
Q ss_pred HHHHHhcCCceEEEeCCCC
Q 034257 50 KEILAEMGYEFTVVTAEID 68 (100)
Q Consensus 50 keLL~~lGi~FeVvpsdvD 68 (100)
+-+|...|++|+.+..+.+
T Consensus 16 r~~L~~~gl~~~~~~~~~~ 34 (71)
T cd03037 16 RMIAGLKNIPVEQIILQND 34 (71)
T ss_pred HHHHHHcCCCeEEEECCCC
Confidence 3556778999998765543
No 100
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=22.75 E-value=66 Score=23.69 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=17.6
Q ss_pred CCCeEEEccCCHHHH----HHHHhcCCce
Q 034257 36 SPIKIILGSSSMARK----EILAEMGYEF 60 (100)
Q Consensus 36 ~~~~iILAS~SPrRk----eLL~~lGi~F 60 (100)
..+++.+.|+++++. +.|+.+|++.
T Consensus 39 ~G~~~~ivTN~~~~~~~~~~~L~~~gl~~ 67 (242)
T TIGR01459 39 QGKPVYFVSNSPRNIFSLHKTLKSLGINA 67 (242)
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHCCCCc
Confidence 456788877777764 5678888753
No 101
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=22.56 E-value=1.9e+02 Score=19.92 Aligned_cols=38 Identities=16% Similarity=0.194 Sum_probs=24.4
Q ss_pred ccCCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHHH
Q 034257 43 GSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALA 85 (100)
Q Consensus 43 AS~SPrRkeLL~~lGi~FeVvpsdvDE~~~~~~~p~e~v~~LA 85 (100)
.|+|-.=++.|++.|++|+++ |+-++.. +.+++...++
T Consensus 11 Cst~RKA~~~L~~~gi~~~~~--d~~~~p~---t~~eL~~~l~ 48 (126)
T TIGR01616 11 CANNARQKAALKASGHDVEVQ--DILKEPW---HADTLRPYFG 48 (126)
T ss_pred CHHHHHHHHHHHHCCCCcEEE--eccCCCc---CHHHHHHHHH
Confidence 355666678999999999988 5544333 4444444444
No 102
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=22.53 E-value=2.3e+02 Score=18.37 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=20.9
Q ss_pred CCCeEEEccCCH--------H--HHHHHHhcCCceEEE
Q 034257 36 SPIKIILGSSSM--------A--RKEILAEMGYEFTVV 63 (100)
Q Consensus 36 ~~~~iILAS~SP--------r--RkeLL~~lGi~FeVv 63 (100)
...++++.|.++ + =+.+|+.+|+.|...
T Consensus 40 ~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 77 (132)
T TIGR01662 40 AGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVPIDVL 77 (132)
T ss_pred CCCEEEEEECCccccccHHHHHHHHHHHHHCCCCEEEE
Confidence 457899999987 2 456888899986544
No 103
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=22.34 E-value=1.3e+02 Score=22.93 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=21.7
Q ss_pred eEEEccCCHHHHHHHHhcCCceEEEe
Q 034257 39 KIILGSSSMARKEILAEMGYEFTVVT 64 (100)
Q Consensus 39 ~iILAS~SPrRkeLL~~lGi~FeVvp 64 (100)
++|....|+.|.++++++|.++.+..
T Consensus 196 ~Vi~~~~~~~~~~~a~~lGa~~vi~~ 221 (343)
T PRK09880 196 EIVCADVSPRSLSLAREMGADKLVNP 221 (343)
T ss_pred EEEEEeCCHHHHHHHHHcCCcEEecC
Confidence 58888899999999999998765543
No 104
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=22.28 E-value=1.9e+02 Score=19.06 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=22.4
Q ss_pred cCCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHHH
Q 034257 44 SSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALA 85 (100)
Q Consensus 44 S~SPrRkeLL~~lGi~FeVvpsdvDE~~~~~~~p~e~v~~LA 85 (100)
|.+.+=+++|+..|++|+.+ |+.++.. +..++...++
T Consensus 11 ~~c~ka~~~L~~~gi~~~~i--di~~~~~---~~~el~~~~~ 47 (115)
T cd03032 11 SSCRKAKQWLEEHQIPFEER--NLFKQPL---TKEELKEILS 47 (115)
T ss_pred HHHHHHHHHHHHCCCceEEE--ecCCCcc---hHHHHHHHHH
Confidence 33445567899999999887 4555433 3444444443
No 105
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=22.04 E-value=1.2e+02 Score=22.16 Aligned_cols=27 Identities=33% Similarity=0.534 Sum_probs=21.1
Q ss_pred EEEccCCHHH-----HHHHHhcCCceEEEeCC
Q 034257 40 IILGSSSMAR-----KEILAEMGYEFTVVTAE 66 (100)
Q Consensus 40 iILAS~SPrR-----keLL~~lGi~FeVvpsd 66 (100)
||.||.|-.- .++|+.+|++|++....
T Consensus 3 IimGS~SD~~~~~~a~~~L~~~gi~~dv~V~S 34 (156)
T TIGR01162 3 IIMGSDSDLPTMKKAADILEEFGIPYELRVVS 34 (156)
T ss_pred EEECcHhhHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 7888888654 47889999999877654
No 106
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=21.94 E-value=55 Score=18.72 Aligned_cols=11 Identities=45% Similarity=0.549 Sum_probs=8.7
Q ss_pred CHHHHHHHHhc
Q 034257 46 SMARKEILAEM 56 (100)
Q Consensus 46 SPrRkeLL~~l 56 (100)
..||++||+..
T Consensus 16 ~~RRk~IL~k~ 26 (39)
T PF08557_consen 16 ASRRKEILKKH 26 (39)
T ss_pred HHHHHHHHHhC
Confidence 36999999874
No 107
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=21.84 E-value=2.2e+02 Score=17.83 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=20.8
Q ss_pred CCCeEEEccCC-------H---HHHHHHHhcCCceEEEe
Q 034257 36 SPIKIILGSSS-------M---ARKEILAEMGYEFTVVT 64 (100)
Q Consensus 36 ~~~~iILAS~S-------P---rRkeLL~~lGi~FeVvp 64 (100)
++.++++=|.| | +=+++|+..|++|+.+.
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~id 44 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFD 44 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEE
Confidence 34566666653 2 55789999999998884
No 108
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=21.54 E-value=1.1e+02 Score=24.57 Aligned_cols=30 Identities=13% Similarity=0.228 Sum_probs=22.6
Q ss_pred CCCeEEEccCCHHHH--HHHHhcCCc--eEEEeC
Q 034257 36 SPIKIILGSSSMARK--EILAEMGYE--FTVVTA 65 (100)
Q Consensus 36 ~~~~iILAS~SPrRk--eLL~~lGi~--FeVvps 65 (100)
+..++.++|++.|+. +.|+.+|+. |.++..
T Consensus 161 kGikLaIaTS~~Re~v~~~L~~lGLd~YFdvIIs 194 (301)
T TIGR01684 161 RGCILVLWSYGDRDHVVESMRKVKLDRYFDIIIS 194 (301)
T ss_pred CCCEEEEEECCCHHHHHHHHHHcCCCcccCEEEE
Confidence 456899999998874 479999997 654443
No 109
>PRK10824 glutaredoxin-4; Provisional
Probab=20.97 E-value=1.6e+02 Score=20.10 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=16.5
Q ss_pred HHHHHHHHhcCCceEEEeCCCCC
Q 034257 47 MARKEILAEMGYEFTVVTAEIDE 69 (100)
Q Consensus 47 PrRkeLL~~lGi~FeVvpsdvDE 69 (100)
-+=+++|..+|++|.++ |+++
T Consensus 34 ~~ak~lL~~~~i~~~~i--di~~ 54 (115)
T PRK10824 34 AQAVQALSACGERFAYV--DILQ 54 (115)
T ss_pred HHHHHHHHHcCCCceEE--EecC
Confidence 46679999999999876 5554
No 110
>KOG3307 consensus Molybdopterin converting factor subunit 2 [Coenzyme transport and metabolism]
Probab=20.71 E-value=64 Score=23.32 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=32.0
Q ss_pred cceecccccccccccccccccC---CCCCCeEEEccCCHHHHHHHHhc
Q 034257 12 AHLQTTLESGTEFERKRGMARS---ESSPIKIILGSSSMARKEILAEM 56 (100)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iILAS~SPrRkeLL~~l 56 (100)
-.||++..+.-|.-.-.=+++. .-....+|.|-+||.|..-|+..
T Consensus 66 r~IC~~iR~~wpvkkIAvfHRLG~VpvgEsSviIavSS~HRa~~l~A~ 113 (150)
T KOG3307|consen 66 RGICAEIRAEWPVKKIAVFHRLGKVPVGESSVIIAVSSPHRATALQAT 113 (150)
T ss_pred HHHHHHHHhhCchhhhhhhhhccCcccCcceEEEEecChhhHHHHHHH
Confidence 3588888888886555555544 23355699999999999877653
No 111
>PF11538 Snurportin1: Snurportin1; InterPro: IPR024721 Snurportin-1 is a nuclear import receptor that contains an N-terminal importin beta binding domain which is essential for its function as an snRNP-specific nuclear import receptor []. Snurportin-1 interacts with m3G-cap where it enhances the m3G-cap dependent nuclear import of U snRNPs in Xenopus laevis oocytes and digitonin-permeabilized HeLa cells []. This entry represents the snurportin-1 N-terminal importin beta binding domain (IBB). The essential role of the IBB domain for snurportin-1 function suggests that snurportin-1 cooperates with importin beta in mediating nuclear import of snRNPs.; GO: 0005515 protein binding; PDB: 3LWW_D 3NC0_E 3NBZ_E 2Q5D_C 3NBY_B 3GB8_B 3GJX_B 2QNA_B 2P8Q_B.
Probab=20.34 E-value=47 Score=19.07 Aligned_cols=14 Identities=21% Similarity=0.219 Sum_probs=11.7
Q ss_pred EccCCHHHHHHHHh
Q 034257 42 LGSSSMARKEILAE 55 (100)
Q Consensus 42 LAS~SPrRkeLL~~ 55 (100)
-++++.||++.|+.
T Consensus 13 ~~~Q~eRR~~~Le~ 26 (40)
T PF11538_consen 13 ALDQEERRREFLER 26 (40)
T ss_dssp SCSHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHH
Confidence 35889999999976
No 112
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=20.32 E-value=80 Score=20.90 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=17.6
Q ss_pred HHHHHhcCCceEEEeCCCCCCC
Q 034257 50 KEILAEMGYEFTVVTAEIDEKS 71 (100)
Q Consensus 50 keLL~~lGi~FeVvpsdvDE~~ 71 (100)
+++|+++|+++++..-.+||-.
T Consensus 23 e~~l~~~gi~~~~~~~~v~~~~ 44 (93)
T COG3414 23 EEVLKELGIDVDVEQCAVDEIK 44 (93)
T ss_pred HHHHHHcCCCceeeeEEecccc
Confidence 6789999998887777777754
No 113
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=20.01 E-value=1.2e+02 Score=18.93 Aligned_cols=20 Identities=15% Similarity=0.396 Sum_probs=15.3
Q ss_pred HHHHHHHHhcCCceEEEeCC
Q 034257 47 MARKEILAEMGYEFTVVTAE 66 (100)
Q Consensus 47 PrRkeLL~~lGi~FeVvpsd 66 (100)
.+=+++|...|++|+.+-.+
T Consensus 15 ~~ak~~L~~~g~~~~~i~~~ 34 (80)
T COG0695 15 KRAKRLLDRKGVDYEEIDVD 34 (80)
T ss_pred HHHHHHHHHcCCCcEEEEec
Confidence 45588999999999876433
Done!