BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034258
(100 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H8G|A Chain A, 5'-Methylthioadenosine Nucleosidase From Arabidopsis
Thaliana
pdb|2H8G|B Chain B, 5'-Methylthioadenosine Nucleosidase From Arabidopsis
Thaliana
pdb|2QSU|A Chain A, Structure Of Arabidopsis Thaliana 5'-Methylthioadenosine
Nucleosidase In Apo Form
pdb|2QSU|B Chain B, Structure Of Arabidopsis Thaliana 5'-Methylthioadenosine
Nucleosidase In Apo Form
pdb|2QTG|A Chain A, Crystal Structure Of Arabidopsis Thaliana 5'-
Methylthioadenosine Nucleosidase In Complex With 5'-
Methylthiotubercidin
pdb|2QTG|B Chain B, Crystal Structure Of Arabidopsis Thaliana 5'-
Methylthioadenosine Nucleosidase In Complex With 5'-
Methylthiotubercidin
pdb|2QTT|A Chain A, Crystal Structure Of Arabidopsis Thaliana 5'-
Methylthioadenosine Nucleosidase In Complex With
Formycin A
pdb|2QTT|B Chain B, Crystal Structure Of Arabidopsis Thaliana 5'-
Methylthioadenosine Nucleosidase In Complex With
Formycin A
pdb|3LGS|A Chain A, A. Thaliana Mta Nucleosidase In Complex With
S-Adenosylhomocysteine
pdb|3LGS|B Chain B, A. Thaliana Mta Nucleosidase In Complex With
S-Adenosylhomocysteine
pdb|3LGS|C Chain C, A. Thaliana Mta Nucleosidase In Complex With
S-Adenosylhomocysteine
pdb|3LGS|D Chain D, A. Thaliana Mta Nucleosidase In Complex With
S-Adenosylhomocysteine
Length = 267
Score = 152 bits (384), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 71/98 (72%), Positives = 87/98 (88%)
Query: 3 IEVCKLSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDG 62
+++ +LSTGDSLDMS+QDET I ANDAT+KDMEGAAVAYVADL K+P +F+KAVTDLVDG
Sbjct: 170 LKIGRLSTGDSLDMSTQDETLIIANDATLKDMEGAAVAYVADLLKIPVVFLKAVTDLVDG 229
Query: 63 DKPTAEEFMQNLVAVTAALEQSVSQVIDFINGKRFSEL 100
DKPTAEEF+QNL VTAALE + ++VI+FING+ S+L
Sbjct: 230 DKPTAEEFLQNLTVVTAALEGTATKVINFINGRNLSDL 267
>pdb|3BSF|A Chain A, Crystal Structure Of The MtaSAH NUCLEOSIDASE
pdb|3BSF|B Chain B, Crystal Structure Of The MtaSAH NUCLEOSIDASE
Length = 254
Score = 145 bits (366), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 67/98 (68%), Positives = 87/98 (88%)
Query: 3 IEVCKLSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDG 62
++V +LSTGDS+DMS DE SITANDAT+KDMEGAAVAYVAD+FKVP I +K VTD+VDG
Sbjct: 157 LKVGRLSTGDSMDMSPHDEESITANDATVKDMEGAAVAYVADIFKVPTILIKGVTDIVDG 216
Query: 63 DKPTAEEFMQNLVAVTAALEQSVSQVIDFINGKRFSEL 100
++PT+EEF++NL AVTA L++S+++VIDFI+GK S+L
Sbjct: 217 NRPTSEEFLENLAAVTAKLDESLTKVIDFISGKCLSDL 254
>pdb|3DP9|A Chain A, Crystal Structure Of Vibrio Cholerae
5'-methylthioadenosine/s-adenosyl Homocysteine
Nucleosidase (mtan) Complexed With Butylthio-dadme-
Immucillin A
pdb|3DP9|C Chain C, Crystal Structure Of Vibrio Cholerae
5'-methylthioadenosine/s-adenosyl Homocysteine
Nucleosidase (mtan) Complexed With Butylthio-dadme-
Immucillin A
Length = 231
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 8 LSTGDSLDMSSQDETSITANDATIK--DMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKP 65
+ TGD+ +++ + I + ++ +ME +A+A FKVP + V+A++D+ D + P
Sbjct: 146 ICTGDAFVCTAERQQFIRQHFPSVVAVEMEASAIAQTCHQFKVPFVVVRAISDVADKESP 205
Query: 66 TA-EEFM 71
+ EEF+
Sbjct: 206 LSFEEFL 212
>pdb|4G89|A Chain A, Crystal Structure Of K. Pneumoniae MtaADOHCY NUCLEOSIDASE
IN COMPLEX With Fragmented S-Adenosyl-L-Homocysteine
pdb|4G89|B Chain B, Crystal Structure Of K. Pneumoniae MtaADOHCY NUCLEOSIDASE
IN COMPLEX With Fragmented S-Adenosyl-L-Homocysteine
Length = 237
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 10 TGDSLDMSSQDETSITAN--DATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKPTA 67
+GD+ S I N A +ME A+A+V FKVP + V+A++D+ D +
Sbjct: 152 SGDAFINGSVGLAKIRHNFPQAIAVEMEATAIAHVCHNFKVPFVVVRAISDVADQQSHLS 211
Query: 68 -EEFM 71
EEF+
Sbjct: 212 FEEFL 216
>pdb|4FFS|A Chain A, Crystal Structure Of
5'-MethylthioadenosineS-Adenosylhomocysteine
Nucleosidase From Helicobacter Pylori With
Butyl-Thio-Dadme- Immucillin-A
Length = 239
Score = 32.3 bits (72), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 8 LSTGDSLDMSSQ-DETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKPT 66
+++GD S + E ++ A+ +MEGA+VA+V F VP +++++D D
Sbjct: 156 IASGDQFVHSKERKEFLVSEFKASAVEMEGASVAFVCQKFGVPCCVLRSISDNADEKAGM 215
Query: 67 A-EEFMQNLVAVTAALEQSV 85
+ +EF++ +A +S+
Sbjct: 216 SFDEFLEKSAHTSAKFLKSM 235
>pdb|3NM4|A Chain A, Helicobacter Pylori Mtan
pdb|3NM4|B Chain B, Helicobacter Pylori Mtan
pdb|3NM5|A Chain A, Helicobacter Pylori Mtan Complexed With Formycin A
pdb|3NM5|B Chain B, Helicobacter Pylori Mtan Complexed With Formycin A
pdb|3NM6|B Chain B, Helicobacter Pylori Mtan Complexed With Adenine And Tris
Length = 230
Score = 32.3 bits (72), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 8 LSTGDSLDMSSQ-DETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKPT 66
+++GD S + E ++ A+ +MEGA+VA+V F VP +++++D D
Sbjct: 147 IASGDQFVHSKERKEFLVSEFKASAVEMEGASVAFVCQKFGVPCCVLRSISDNADEKAGM 206
Query: 67 A-EEFMQNLVAVTAALEQSV 85
+ +EF++ +A +S+
Sbjct: 207 SFDEFLEKSAHTSAKFLKSM 226
>pdb|3BL6|A Chain A, Crystal Structure Of Staphylococcus Aureus 5'-
MethylthioadenosineS-Adenosylhomocysteine Nucleosidase
In Complex With Formycin A
Length = 230
Score = 32.0 bits (71), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 10 TGDSLDMSSQDETSITA--NDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKPTA 67
+GDS S + I +A +ME A+A F VP + V+AV+DL +G+ +
Sbjct: 148 SGDSFIGSVEQRQKIKKAFPNAMAVEMEATAIAQTCYQFNVPFVVVRAVSDLANGEAEMS 207
Query: 68 -EEFMQN-LVAVTAALEQSVSQV 88
E F++ V+ + +E VSQ+
Sbjct: 208 FEAFLEKAAVSSSQTVEALVSQL 230
>pdb|4GMH|A Chain A, Crystal Structure Of Staphylococcus Aureus
5'-MethylthioadenosineS- Adenosylhomocysteine
Nucleosidase
Length = 230
Score = 32.0 bits (71), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 10 TGDSLDMSSQDETSITA--NDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKPTA 67
+GDS S + I +A +ME A+A F VP + V+AV+DL +G+ +
Sbjct: 148 SGDSFIGSVEQRQKIKKAFPNAMAVEMEATAIAQTCYQFNVPFVVVRAVSDLANGEAEMS 207
Query: 68 -EEFMQN-LVAVTAALEQSVSQV 88
E F++ V+ + +E VSQ+
Sbjct: 208 FEAFLEKAAVSSSQTVEALVSQL 230
>pdb|3O4V|A Chain A, Crystal Structure Of E. Coli MtaSAH NUCLEOSIDASE IN
COMPLEX WITH (4- Chlorophenyl)thio-Dadme-Imma
pdb|3O4V|B Chain B, Crystal Structure Of E. Coli MtaSAH NUCLEOSIDASE IN
COMPLEX WITH (4- Chlorophenyl)thio-Dadme-Imma
Length = 234
Score = 31.2 bits (69), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 10 TGDSLDMSSQDETSITAN--DATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVD 61
+GD+ S I N A +ME A+A+V F VP + V+A++D+ D
Sbjct: 149 SGDAFINGSVGLAKIRHNFPQAIAVEMEATAIAHVCHNFNVPFVVVRAISDVAD 202
>pdb|1Z5N|A Chain A, Crystal Structure Of MtaADOHCY NUCLEOSIDASE GLU12GLN
Mutant Complexed With 5-Methylthioribose And Adenine
pdb|1Z5N|B Chain B, Crystal Structure Of MtaADOHCY NUCLEOSIDASE GLU12GLN
Mutant Complexed With 5-Methylthioribose And Adenine
Length = 242
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 10 TGDSLDMSSQDETSITAN--DATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVD 61
+GD+ S I N A +ME A+A+V F VP + V+A++D+ D
Sbjct: 157 SGDAFINGSVGLAKIRHNFPQAIAVEMEATAIAHVCHNFNVPFVVVRAISDVAD 210
>pdb|1JYS|A Chain A, Crystal Structure Of E. Coli MtaADOHCY NUCLEOSIDASE
pdb|1JYS|B Chain B, Crystal Structure Of E. Coli MtaADOHCY NUCLEOSIDASE
pdb|1NC3|A Chain A, Crystal Structure Of E. Coli Mta/adohcy Nucleosidase
Complexed With Formycin A (fma)
pdb|1NC3|B Chain B, Crystal Structure Of E. Coli Mta/adohcy Nucleosidase
Complexed With Formycin A (fma)
pdb|1NC1|A Chain A, Crystal Structure Of E. Coli MtaADOHCY NUCLEOSIDASE
Complexed With 5'-Methylthiotubercidin (Mth)
pdb|1NC1|B Chain B, Crystal Structure Of E. Coli MtaADOHCY NUCLEOSIDASE
Complexed With 5'-Methylthiotubercidin (Mth)
pdb|1Y6Q|A Chain A, Cyrstal Structure Of MtaADOHCY NUCLEOSIDASE COMPLEXED WITH
Mt-Dadme-Imma
pdb|1Y6Q|B Chain B, Cyrstal Structure Of MtaADOHCY NUCLEOSIDASE COMPLEXED WITH
Mt-Dadme-Imma
pdb|1Y6R|A Chain A, Crystal Structure Of MtaADOHCY NUCLEOSIDASE COMPLEXED WITH
Mt-Imma.
pdb|1Y6R|B Chain B, Crystal Structure Of MtaADOHCY NUCLEOSIDASE COMPLEXED WITH
Mt-Imma.
pdb|1Z5P|A Chain A, Crystal Structure Of MtaADOHCY NUCLEOSIDASE WITH A
LIGAND-Free Purine Binding Site
pdb|3DF9|A Chain A, Crystal Structure Of E. Coli MtaSAH NUCLEOSIDASE IN
Complex With Bnt-Dadmeimma
pdb|3DF9|B Chain B, Crystal Structure Of E. Coli MtaSAH NUCLEOSIDASE IN
Complex With Bnt-Dadmeimma
Length = 242
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 10 TGDSLDMSSQDETSITAN--DATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVD 61
+GD+ S I N A +ME A+A+V F VP + V+A++D+ D
Sbjct: 157 SGDAFINGSVGLAKIRHNFPQAIAVEMEATAIAHVCHNFNVPFVVVRAISDVAD 210
>pdb|1Z5O|A Chain A, Crystal Structure Of MtaADOHCY NUCLEOSIDASE ASP197ASN
Mutant Complexed With 5'-Methylthioadenosine
pdb|1Z5O|B Chain B, Crystal Structure Of MtaADOHCY NUCLEOSIDASE ASP197ASN
Mutant Complexed With 5'-Methylthioadenosine
Length = 242
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 10 TGDSLDMSSQDETSITAN--DATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVD 61
+GD+ S I N A +ME A+A+V F VP + V+A++++ D
Sbjct: 157 SGDAFINGSVGLAKIRHNFPQAIAVEMEATAIAHVCHNFNVPFVVVRAISNVAD 210
>pdb|1ZOS|A Chain A, Structure Of 5'-MethylthionadenosineS-Adenosylhomocysteine
Nucleosidase From S. Pneumoniae With A Transition-State
Inhibitor Mt-Imma
pdb|1ZOS|B Chain B, Structure Of 5'-MethylthionadenosineS-Adenosylhomocysteine
Nucleosidase From S. Pneumoniae With A Transition-State
Inhibitor Mt-Imma
pdb|1ZOS|C Chain C, Structure Of 5'-MethylthionadenosineS-Adenosylhomocysteine
Nucleosidase From S. Pneumoniae With A Transition-State
Inhibitor Mt-Imma
pdb|1ZOS|D Chain D, Structure Of 5'-MethylthionadenosineS-Adenosylhomocysteine
Nucleosidase From S. Pneumoniae With A Transition-State
Inhibitor Mt-Imma
pdb|1ZOS|E Chain E, Structure Of 5'-MethylthionadenosineS-Adenosylhomocysteine
Nucleosidase From S. Pneumoniae With A Transition-State
Inhibitor Mt-Imma
pdb|1ZOS|F Chain F, Structure Of 5'-MethylthionadenosineS-Adenosylhomocysteine
Nucleosidase From S. Pneumoniae With A Transition-State
Inhibitor Mt-Imma
Length = 230
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 8 LSTGDSLDMSSQDETSITAN--DATIKDMEGAAVAYVADLFKVPAIFVKAVTD 58
++TGDS + +I ++ + +MEGAA+A A +P + ++A++D
Sbjct: 145 IATGDSFVAGNDKIEAIKSHFPEVLAVEMEGAAIAQAAHTLNLPVLVIRAMSD 197
>pdb|3EEI|A Chain A, Crystal Structure Of 5'-MethylthioadenosineS-
Adenosylhomocysteine Nucleosidase From Neisseria
Meningitidis In Complex With Methylthio-Immucillin-A
pdb|3EEI|B Chain B, Crystal Structure Of 5'-MethylthioadenosineS-
Adenosylhomocysteine Nucleosidase From Neisseria
Meningitidis In Complex With Methylthio-Immucillin-A
Length = 233
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 10 TGDSLDMSSQDETSITANDATIK--DMEGAAVAYVADLFKVPAIFVKAVTDLVD 61
+GD SS+ I + +K +ME AA+A + P + ++AV+D D
Sbjct: 151 SGDRFVHSSEGVAEIRKHFPEVKAVEMEAAAIAQTCHQLETPFVIIRAVSDSAD 204
>pdb|3CAZ|A Chain A, Crystal Structure Of A Bar Protein From Galdieria
Sulphuraria
pdb|3CAZ|B Chain B, Crystal Structure Of A Bar Protein From Galdieria
Sulphuraria
Length = 294
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 12 DSLDMSSQDETSITANDATIKDMEGAAVAYVADLF-KVPAIFVKAVT 57
D+L+ ++D+ I N KD E A + ADL K ++ K V+
Sbjct: 139 DNLEKKNKDQERIERNQQKFKDAEAAYSSVCADLIQKXETVWKKHVS 185
>pdb|2EO6|A Chain A, Solution Structure Of The Sh2 Domain From Mouse B-Cell
Linker Protein Blnk
Length = 141
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/49 (22%), Positives = 24/49 (48%)
Query: 45 LFKVPAIFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFIN 93
++ +P F++A G K EE+ ++V + + + + +ID N
Sbjct: 72 VYNIPVRFIEATKQYALGKKKNGEEYFGSVVEIVNSHQHNPLVLIDSQN 120
>pdb|3NE9|A Chain A, Chronobacterium Ammoiniagenes Apo-Acps Strucutre
pdb|3NE9|B Chain B, Chronobacterium Ammoiniagenes Apo-Acps Strucutre
pdb|3NE9|C Chain C, Chronobacterium Ammoiniagenes Apo-Acps Strucutre
pdb|3NFD|A Chain A, Chronobacterium Ammoniagenes Acps-Coa Complex
pdb|3NFD|B Chain B, Chronobacterium Ammoniagenes Acps-Coa Complex
pdb|3NFD|C Chain C, Chronobacterium Ammoniagenes Acps-Coa Complex
pdb|3NFD|D Chain D, Chronobacterium Ammoniagenes Acps-Coa Complex
pdb|3NFD|E Chain E, Chronobacterium Ammoniagenes Acps-Coa Complex
pdb|3NFD|F Chain F, Chronobacterium Ammoniagenes Acps-Coa Complex
Length = 153
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 26 ANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKPTAEEFMQNLVAV 77
A DAT + G+ ++A + F+KA + + G P E + N +
Sbjct: 50 AADATNSSLAGSRTEHLAGRWAAKEAFIKAWSQAIYGKPPVIEPDLVNFAEI 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.339
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,420,248
Number of Sequences: 62578
Number of extensions: 74274
Number of successful extensions: 224
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 204
Number of HSP's gapped (non-prelim): 26
length of query: 100
length of database: 14,973,337
effective HSP length: 66
effective length of query: 34
effective length of database: 10,843,189
effective search space: 368668426
effective search space used: 368668426
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)