Query 034258
Match_columns 100
No_of_seqs 120 out of 1021
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 11:30:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034258.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034258hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02584 5'-methylthioadenosin 99.9 1.1E-25 2.4E-30 166.8 12.6 99 2-100 151-249 (249)
2 PRK06714 S-adenosylhomocystein 99.9 1.2E-25 2.6E-30 165.5 11.6 89 2-90 139-229 (236)
3 PRK14697 bifunctional 5'-methy 99.9 1.2E-24 2.7E-29 159.3 11.7 88 2-89 138-227 (233)
4 TIGR01704 MTA/SAH-Nsdase 5'-me 99.9 4.9E-24 1.1E-28 155.3 11.2 88 2-89 138-228 (228)
5 PRK06698 bifunctional 5'-methy 99.9 2E-23 4.4E-28 164.6 11.6 88 2-89 138-227 (459)
6 PRK07164 5'-methylthioadenosin 99.9 3.1E-23 6.8E-28 151.3 11.7 87 3-89 129-218 (218)
7 COG0775 Pfs Nucleoside phospho 99.9 1.1E-22 2.5E-27 149.5 10.5 88 2-89 142-233 (234)
8 PRK05634 nucleosidase; Provisi 99.9 6.2E-22 1.3E-26 141.2 9.8 79 4-83 103-182 (185)
9 TIGR01705 MTA/SAH-nuc-hyp 5'-m 99.9 3.4E-21 7.3E-26 140.4 10.4 78 3-90 127-206 (212)
10 PRK05584 5'-methylthioadenosin 99.9 8.6E-21 1.9E-25 137.4 11.6 88 2-89 139-229 (230)
11 PRK06026 5'-methylthioadenosin 99.8 1.1E-20 2.3E-25 137.8 9.8 82 5-90 123-206 (212)
12 PRK07077 hypothetical protein; 99.8 2.3E-20 5E-25 138.0 10.6 80 2-81 110-203 (238)
13 PRK08236 hypothetical protein; 99.8 1.6E-19 3.5E-24 131.2 9.4 67 2-68 127-196 (212)
14 TIGR03664 fut_nucase futalosin 99.8 2.2E-19 4.7E-24 130.8 6.5 70 2-71 138-209 (222)
15 TIGR03468 HpnG hopanoid-associ 99.8 9.3E-19 2E-23 126.7 8.8 84 2-85 99-185 (212)
16 PF01048 PNP_UDP_1: Phosphoryl 99.7 3.6E-17 7.7E-22 117.5 10.7 86 2-87 142-234 (234)
17 PRK13374 purine nucleoside pho 99.7 4.8E-17 1E-21 119.4 9.8 63 2-64 148-211 (233)
18 TIGR01700 PNPH purine nucleosi 99.7 1.1E-16 2.4E-21 118.6 10.9 87 2-89 156-247 (249)
19 TIGR01697 PNPH-PUNA-XAPA inosi 99.7 2.5E-16 5.5E-21 116.4 11.5 86 2-89 156-246 (248)
20 PRK05819 deoD purine nucleosid 99.7 3.5E-16 7.5E-21 114.8 10.7 63 2-64 147-210 (235)
21 TIGR00107 deoD purine-nucleosi 99.7 1.3E-15 2.7E-20 111.7 10.8 62 2-63 144-206 (232)
22 PRK07115 AMP nucleosidase; Pro 99.6 6.1E-15 1.3E-19 110.1 11.6 61 2-62 150-212 (258)
23 TIGR01694 MTAP 5'-deoxy-5'-met 99.6 1.2E-14 2.5E-19 107.0 10.8 86 2-88 147-238 (241)
24 PRK08292 AMP nucleosidase; Pro 99.6 1.3E-14 2.9E-19 116.0 11.9 62 2-63 374-438 (489)
25 TIGR01717 AMP-nucleosdse AMP n 99.6 1.6E-14 3.5E-19 115.3 11.8 62 2-63 362-426 (477)
26 PRK08202 purine nucleoside pho 99.6 2E-14 4.3E-19 107.8 11.5 85 2-87 178-267 (272)
27 PRK08666 5'-methylthioadenosin 99.6 2.3E-14 4.9E-19 106.7 11.2 91 2-93 149-245 (261)
28 TIGR01719 euk_UDPppase uridine 99.6 4.5E-14 9.7E-19 106.8 10.9 86 2-87 179-282 (287)
29 TIGR01721 AMN-like AMP nucleos 99.5 1E-13 2.2E-18 104.1 11.7 61 2-62 151-213 (266)
30 TIGR01718 Uridine-psphlse urid 99.4 1.7E-12 3.7E-17 95.9 9.6 61 2-62 143-217 (245)
31 TIGR01699 XAPA xanthosine phos 99.4 7.3E-12 1.6E-16 93.2 11.1 78 2-80 156-238 (248)
32 PRK11178 uridine phosphorylase 99.3 1.6E-11 3.5E-16 91.1 10.9 59 2-60 148-221 (251)
33 COG0813 DeoD Purine-nucleoside 99.3 4.2E-12 9E-17 93.1 7.3 78 1-78 147-233 (236)
34 PRK09136 5'-methylthioadenosin 99.3 5.9E-11 1.3E-15 88.1 11.4 83 2-85 149-238 (245)
35 COG2820 Udp Uridine phosphoryl 98.8 3.2E-08 6.8E-13 73.5 7.7 63 2-64 148-223 (248)
36 PRK08931 5'-methylthioadenosin 96.9 0.022 4.8E-07 43.6 11.0 84 8-92 160-247 (289)
37 PRK07432 5'-methylthioadenosin 96.8 0.028 6.1E-07 43.0 10.7 91 3-94 155-252 (290)
38 TIGR01698 PUNP purine nucleoti 96.8 0.032 6.9E-07 41.5 10.5 79 3-82 146-229 (237)
39 PRK08564 5'-methylthioadenosin 96.6 0.045 9.7E-07 41.3 10.3 90 3-93 156-251 (267)
40 PRK07823 5'-methylthioadenosin 96.5 0.054 1.2E-06 40.9 10.4 88 4-92 149-242 (264)
41 COG0005 Pnp Purine nucleoside 94.5 0.32 7E-06 36.8 8.0 80 8-88 177-258 (262)
42 KOG3984 Purine nucleoside phos 91.3 0.86 1.9E-05 34.6 6.1 59 2-61 186-246 (286)
43 PF06516 NUP: Purine nucleosid 90.2 1.4 3.1E-05 34.2 6.7 90 2-91 190-308 (314)
44 KOG3985 Methylthioadenosine ph 77.4 13 0.00029 28.2 6.6 54 6-60 169-222 (283)
45 KOG3728 Uridine phosphorylase 69.3 9.6 0.00021 29.1 4.2 37 28-64 242-279 (308)
46 PRK08227 autoinducer 2 aldolas 66.1 9.3 0.0002 28.9 3.7 48 35-87 128-176 (264)
47 PF01008 IF-2B: Initiation fac 60.7 8.5 0.00018 28.5 2.6 26 28-53 191-216 (282)
48 PF06415 iPGM_N: BPG-independe 59.6 56 0.0012 24.2 6.7 44 36-79 48-91 (223)
49 PRK06372 translation initiatio 57.8 12 0.00026 28.2 2.9 32 29-61 167-198 (253)
50 PRK09932 glycerate kinase II; 53.3 76 0.0016 25.4 6.9 52 37-88 306-372 (381)
51 PF13528 Glyco_trans_1_3: Glyc 52.8 29 0.00062 25.4 4.3 38 22-60 88-127 (318)
52 PRK08535 translation initiatio 52.2 16 0.00034 28.1 2.8 25 29-53 204-228 (310)
53 TIGR00045 glycerate kinase. Th 48.6 75 0.0016 25.3 6.2 51 37-87 305-370 (375)
54 PRK06371 translation initiatio 48.3 20 0.00042 28.1 2.9 28 28-55 230-257 (329)
55 PRK08335 translation initiatio 47.4 21 0.00046 27.1 2.9 26 28-53 192-217 (275)
56 TIGR00511 ribulose_e2b2 ribose 46.7 22 0.00047 27.2 2.9 26 28-53 198-223 (301)
57 PF05889 SLA_LP_auto_ag: Solub 46.7 14 0.0003 29.7 1.8 45 7-52 130-190 (389)
58 PRK05772 translation initiatio 45.4 22 0.00048 28.1 2.8 26 28-53 261-286 (363)
59 KOG1468 Predicted translation 44.9 35 0.00075 26.7 3.7 39 6-54 236-274 (354)
60 PRK06036 translation initiatio 44.4 24 0.00052 27.7 2.8 24 34-57 246-269 (339)
61 PRK10342 glycerate kinase I; P 44.2 1.1E+02 0.0024 24.5 6.5 52 37-88 306-372 (381)
62 TIGR00524 eIF-2B_rel eIF-2B al 44.1 25 0.00053 27.0 2.8 26 28-53 212-237 (303)
63 PRK08334 translation initiatio 43.0 26 0.00056 27.8 2.8 27 31-57 256-282 (356)
64 PF02595 Gly_kinase: Glycerate 42.8 23 0.00051 28.1 2.6 23 37-59 306-328 (377)
65 PRK05720 mtnA methylthioribose 42.7 27 0.00058 27.4 2.8 30 28-57 240-269 (344)
66 COG2873 MET17 O-acetylhomoseri 42.5 22 0.00047 28.8 2.3 22 30-53 162-183 (426)
67 TIGR00512 salvage_mtnA S-methy 42.2 27 0.00059 27.3 2.8 29 28-56 240-268 (331)
68 cd00958 DhnA Class I fructose- 42.0 44 0.00095 23.9 3.7 28 25-52 86-127 (235)
69 PRK11761 cysM cysteine synthas 41.3 31 0.00067 26.0 2.9 19 36-54 75-93 (296)
70 cd01561 CBS_like CBS_like: Thi 40.8 30 0.00065 25.7 2.8 19 36-54 65-83 (291)
71 PRK06381 threonine synthase; V 40.3 32 0.0007 25.9 2.9 18 36-53 75-92 (319)
72 TIGR01138 cysM cysteine syntha 40.2 31 0.00068 25.8 2.8 18 36-53 71-88 (290)
73 cd01917 ACS_2 Acetyl-CoA synth 40.1 66 0.0014 24.9 4.5 46 31-76 231-281 (287)
74 PF07355 GRDB: Glycine/sarcosi 39.9 90 0.002 24.8 5.4 49 4-52 50-116 (349)
75 PF07881 Fucose_iso_N1: L-fuco 39.4 83 0.0018 22.5 4.7 40 47-86 2-42 (171)
76 PF04748 Polysacc_deac_2: Dive 39.1 1.5E+02 0.0032 21.5 6.4 70 8-78 95-171 (213)
77 TIGR01744 XPRTase xanthine pho 38.9 53 0.0012 23.4 3.7 54 3-56 14-82 (191)
78 smart00460 TGc Transglutaminas 38.3 64 0.0014 18.0 3.4 23 37-59 14-36 (68)
79 TIGR01917 gly_red_sel_B glycin 38.1 1E+02 0.0022 25.2 5.5 53 5-57 47-117 (431)
80 TIGR01949 AroFGH_arch predicte 38.0 1.4E+02 0.003 21.9 5.9 30 26-55 101-144 (258)
81 KOG0064 Peroxisomal long-chain 37.8 37 0.0008 29.0 3.1 39 13-53 626-665 (728)
82 TIGR01918 various_sel_PB selen 37.7 1E+02 0.0023 25.1 5.5 53 5-57 47-117 (431)
83 TIGR01743 purR_Bsub pur operon 37.6 42 0.00091 25.5 3.1 28 29-56 132-160 (268)
84 PRK13810 orotate phosphoribosy 37.5 42 0.00091 23.9 3.0 32 29-60 77-110 (187)
85 PLN02565 cysteine synthase 37.1 37 0.0008 26.0 2.8 19 35-53 78-96 (322)
86 PRK07226 fructose-bisphosphate 36.9 1.5E+02 0.0033 21.9 6.0 30 24-53 102-145 (267)
87 cd06448 L-Ser-dehyd Serine deh 36.9 39 0.00084 25.7 2.9 18 36-53 63-80 (316)
88 PRK08813 threonine dehydratase 36.3 40 0.00087 26.4 2.9 19 36-54 93-111 (349)
89 PRK07048 serine/threonine dehy 36.0 41 0.00089 25.4 2.9 18 36-53 84-101 (321)
90 PRK06815 hypothetical protein; 35.9 40 0.00087 25.5 2.9 19 36-54 80-98 (317)
91 cd00640 Trp-synth-beta_II Tryp 35.5 44 0.00096 23.9 2.9 18 36-53 62-79 (244)
92 TIGR01136 cysKM cysteine synth 35.3 43 0.00092 25.0 2.9 18 36-53 70-87 (299)
93 cd06449 ACCD Aminocyclopropane 35.2 41 0.0009 25.2 2.8 19 35-53 65-83 (307)
94 cd01562 Thr-dehyd Threonine de 35.0 45 0.00098 24.6 3.0 19 36-54 77-95 (304)
95 TIGR01139 cysK cysteine syntha 34.3 45 0.00097 24.9 2.8 18 36-53 69-86 (298)
96 PRK06110 hypothetical protein; 34.1 46 0.001 25.2 2.9 18 36-53 82-99 (322)
97 PRK09213 pur operon repressor; 34.1 51 0.0011 25.1 3.1 27 29-55 134-161 (271)
98 cd05126 Mth938 Mth938 domain. 33.3 1.2E+02 0.0026 19.9 4.5 38 7-44 63-102 (117)
99 PRK09250 fructose-bisphosphate 33.2 54 0.0012 26.0 3.2 50 35-88 180-236 (348)
100 PLN02970 serine racemase 33.1 49 0.0011 25.2 3.0 18 36-53 87-104 (328)
101 cd06380 PBP1_iGluR_AMPA N-term 32.8 58 0.0013 24.6 3.3 52 9-60 44-99 (382)
102 PRK07476 eutB threonine dehydr 32.6 49 0.0011 25.1 2.8 18 36-53 79-96 (322)
103 TIGR00661 MJ1255 conserved hyp 32.1 85 0.0018 23.4 4.1 33 21-54 86-120 (321)
104 PRK06608 threonine dehydratase 31.9 52 0.0011 25.3 2.9 18 36-53 84-101 (338)
105 COG1929 Glycerate kinase [Carb 31.8 40 0.00087 27.0 2.3 23 37-59 306-329 (378)
106 COG1103 Archaea-specific pyrid 31.7 38 0.00082 26.6 2.1 17 36-52 175-191 (382)
107 TIGR01275 ACC_deam_rel pyridox 31.4 51 0.0011 24.7 2.8 19 35-53 69-87 (311)
108 PF14907 NTP_transf_5: Unchara 31.1 49 0.0011 23.5 2.5 29 29-57 53-81 (249)
109 cd01563 Thr-synth_1 Threonine 31.0 55 0.0012 24.6 2.9 19 36-54 82-100 (324)
110 PRK10717 cysteine synthase A; 30.6 56 0.0012 24.8 2.9 18 36-53 76-93 (330)
111 PLN00011 cysteine synthase 30.5 54 0.0012 24.9 2.8 18 36-53 81-98 (323)
112 PRK03910 D-cysteine desulfhydr 30.3 54 0.0012 24.9 2.8 18 36-53 78-95 (331)
113 PRK07334 threonine dehydratase 30.0 58 0.0013 25.6 2.9 18 36-53 83-100 (403)
114 PRK07409 threonine synthase; V 29.9 59 0.0013 25.0 2.9 23 31-54 86-108 (353)
115 COG0182 Predicted translation 29.7 59 0.0013 25.7 2.9 42 8-59 233-274 (346)
116 TIGR01127 ilvA_1Cterm threonin 29.6 61 0.0013 25.1 3.0 18 36-53 60-77 (380)
117 PF00291 PALP: Pyridoxal-phosp 29.4 48 0.001 24.2 2.3 19 36-54 68-86 (306)
118 PRK06852 aldolase; Validated 29.3 54 0.0012 25.4 2.6 49 35-87 155-206 (304)
119 PRK13812 orotate phosphoribosy 29.3 72 0.0016 22.3 3.1 28 28-55 61-89 (176)
120 cd06351 PBP1_iGluR_N_LIVBP_lik 29.2 44 0.00096 24.1 2.1 50 11-60 46-100 (328)
121 PRK06352 threonine synthase; V 29.1 60 0.0013 25.1 2.8 19 36-54 87-105 (351)
122 TIGR02991 ectoine_eutB ectoine 28.6 63 0.0014 24.5 2.9 18 36-53 79-96 (317)
123 PRK08638 threonine dehydratase 28.5 64 0.0014 24.8 2.9 23 36-60 87-109 (333)
124 PRK06721 threonine synthase; R 28.5 64 0.0014 24.9 2.9 19 36-54 87-105 (352)
125 PRK09219 xanthine phosphoribos 28.4 75 0.0016 22.6 3.1 28 29-56 54-82 (189)
126 cd06392 PBP1_iGluR_delta_1 N-t 28.3 66 0.0014 25.5 3.0 46 7-53 42-92 (400)
127 PRK08206 diaminopropionate amm 28.2 66 0.0014 25.4 3.0 19 36-54 128-146 (399)
128 TIGR00263 trpB tryptophan synt 28.1 65 0.0014 25.3 2.9 20 35-54 110-129 (385)
129 TIGR01274 ACC_deam 1-aminocycl 28.1 65 0.0014 24.6 2.9 28 27-54 64-98 (337)
130 COG0503 Apt Adenine/guanine ph 28.1 56 0.0012 23.0 2.3 24 32-55 58-84 (179)
131 PRK06186 hypothetical protein; 28.0 57 0.0012 24.2 2.4 21 33-53 67-88 (229)
132 PRK08198 threonine dehydratase 27.9 67 0.0014 25.1 3.0 19 36-54 82-100 (404)
133 PF10087 DUF2325: Uncharacteri 27.6 72 0.0016 19.8 2.6 17 38-54 66-82 (97)
134 TIGR00260 thrC threonine synth 27.3 55 0.0012 24.6 2.3 18 36-53 83-100 (328)
135 PRK12390 1-aminocyclopropane-1 27.1 67 0.0015 24.4 2.8 27 27-53 65-98 (337)
136 TIGR01747 diampropi_NH3ly diam 26.5 74 0.0016 25.0 3.0 19 36-54 106-124 (376)
137 TIGR03528 2_3_DAP_am_ly diamin 26.3 74 0.0016 25.2 3.0 18 36-53 125-142 (396)
138 PRK15116 sulfur acceptor prote 26.2 1.3E+02 0.0028 22.7 4.1 53 12-64 106-163 (268)
139 cd02991 UAS_ETEA UAS family, E 26.0 1.4E+02 0.0031 19.3 3.9 44 16-59 41-88 (116)
140 PRK14045 1-aminocyclopropane-1 25.7 74 0.0016 24.2 2.8 19 36-54 84-102 (329)
141 PRK06260 threonine synthase; V 25.2 78 0.0017 24.8 2.9 22 32-54 124-145 (397)
142 PRK08246 threonine dehydratase 25.0 82 0.0018 23.8 2.9 19 36-54 80-98 (310)
143 TIGR02263 benz_CoA_red_C benzo 24.8 1.7E+02 0.0036 22.9 4.7 33 33-70 337-369 (380)
144 cd03315 MLE_like Muconate lact 24.8 2E+02 0.0043 20.9 4.9 46 7-52 182-236 (265)
145 PLN02618 tryptophan synthase, 24.7 81 0.0018 25.3 2.9 23 36-58 132-154 (410)
146 cd03784 GT1_Gtf_like This fami 24.6 1.2E+02 0.0026 23.0 3.8 32 28-60 106-138 (401)
147 PRK07591 threonine synthase; V 24.5 82 0.0018 25.0 2.9 19 36-54 149-167 (421)
148 PRK06382 threonine dehydratase 24.3 84 0.0018 24.7 2.9 19 36-54 85-103 (406)
149 TIGR02079 THD1 threonine dehyd 24.3 85 0.0018 24.8 3.0 19 36-54 76-94 (409)
150 PRK12675 putative monovalent c 24.3 78 0.0017 20.7 2.3 26 35-63 77-102 (104)
151 cd06447 D-Ser-dehyd D-Serine d 24.1 86 0.0019 25.0 3.0 18 36-53 146-163 (404)
152 TIGR00269 conserved hypothetic 24.0 1.9E+02 0.0041 18.3 4.1 49 39-89 15-64 (104)
153 KOG0540 3-Methylcrotonyl-CoA c 23.9 88 0.0019 26.0 3.0 64 34-97 371-434 (536)
154 TIGR01137 cysta_beta cystathio 23.8 83 0.0018 24.7 2.8 18 36-53 74-91 (454)
155 cd06367 PBP1_iGluR_NMDA N-term 23.7 66 0.0014 24.1 2.2 25 36-60 79-103 (362)
156 PRK05434 phosphoglyceromutase; 23.6 3.6E+02 0.0078 22.4 6.5 44 36-79 130-173 (507)
157 TIGR01307 pgm_bpd_ind 2,3-bisp 23.5 3.5E+02 0.0076 22.5 6.4 42 36-77 126-167 (501)
158 PRK05638 threonine synthase; V 23.5 88 0.0019 24.9 2.9 18 36-53 124-141 (442)
159 PLN02556 cysteine synthase/L-3 23.4 92 0.002 24.4 3.0 18 36-53 123-140 (368)
160 TIGR03844 cysteate_syn cysteat 23.3 89 0.0019 24.8 2.9 18 36-53 129-146 (398)
161 PRK08639 threonine dehydratase 22.9 94 0.002 24.6 3.0 19 36-54 85-103 (420)
162 PLN00191 enolase 22.8 1.3E+02 0.0028 24.5 3.8 46 7-52 338-393 (457)
163 cd06547 GH85_ENGase Endo-beta- 22.8 1.5E+02 0.0033 23.0 4.1 24 31-54 43-66 (339)
164 PF00391 PEP-utilizers: PEP-ut 22.7 72 0.0016 19.2 1.8 14 39-52 45-58 (80)
165 COG4799 Acetyl-CoA carboxylase 22.7 91 0.002 26.1 2.9 61 37-97 349-409 (526)
166 PF00382 TFIIB: Transcription 22.5 86 0.0019 18.2 2.1 18 33-50 38-55 (71)
167 KOG0060 Long-chain acyl-CoA tr 22.5 69 0.0015 27.5 2.2 25 28-53 599-623 (659)
168 PRK08526 threonine dehydratase 22.5 97 0.0021 24.6 3.0 19 36-54 80-98 (403)
169 PRK08329 threonine synthase; V 22.5 98 0.0021 23.8 2.9 18 36-53 116-133 (347)
170 COG1184 GCD2 Translation initi 22.4 95 0.0021 24.1 2.8 18 36-53 210-227 (301)
171 PLN02208 glycosyltransferase f 22.3 1.3E+02 0.0028 24.1 3.7 28 28-56 109-136 (442)
172 PF05225 HTH_psq: helix-turn-h 22.1 50 0.0011 18.0 0.9 14 37-50 17-30 (45)
173 COG1806 Uncharacterized protei 22.0 28 0.0006 26.7 -0.2 25 28-52 225-249 (273)
174 PLN03013 cysteine synthase 22.0 99 0.0022 25.0 3.0 19 35-53 186-204 (429)
175 PRK09224 threonine dehydratase 21.9 98 0.0021 25.3 2.9 19 36-54 80-98 (504)
176 PRK13028 tryptophan synthase s 21.8 1E+02 0.0022 24.6 2.9 24 35-58 122-145 (402)
177 PF10740 DUF2529: Protein of u 21.7 95 0.0021 22.2 2.5 24 31-54 92-115 (172)
178 cd06385 PBP1_NPR_A Ligand-bind 21.4 63 0.0014 24.7 1.7 29 32-60 83-111 (405)
179 PRK04346 tryptophan synthase s 21.3 1E+02 0.0022 24.5 2.9 25 34-58 117-141 (397)
180 KOG1467 Translation initiation 21.2 81 0.0018 26.4 2.3 26 28-53 442-467 (556)
181 PTZ00081 enolase; Provisional 21.2 1.8E+02 0.0038 23.6 4.2 46 7-52 326-381 (439)
182 cd06413 GH25_muramidase_1 Unch 21.1 2.6E+02 0.0056 19.4 4.7 28 44-72 21-48 (191)
183 TIGR01124 ilvA_2Cterm threonin 20.9 1.1E+02 0.0023 25.2 3.0 19 36-54 77-95 (499)
184 KOG1532 GTPase XAB1, interacts 20.9 2.1E+02 0.0045 22.7 4.4 47 43-89 177-228 (366)
185 PLN02356 phosphateglycerate ki 20.9 1.1E+02 0.0023 24.8 2.9 18 36-53 116-133 (423)
186 cd06523 GH25_PlyB-like PlyB is 20.8 2.2E+02 0.0048 19.6 4.2 26 45-71 20-45 (177)
187 smart00594 UAS UAS domain. 20.7 1.3E+02 0.0029 19.3 2.9 40 16-55 51-94 (122)
188 PRK06450 threonine synthase; V 20.7 1.1E+02 0.0025 23.5 3.0 18 36-53 109-126 (338)
189 PLN02764 glycosyltransferase f 20.7 1.5E+02 0.0032 24.1 3.7 28 28-56 110-137 (453)
190 cd06446 Trp-synth_B Tryptophan 20.6 1.1E+02 0.0024 23.7 2.9 19 36-54 95-113 (365)
191 TIGR02369 trimeth_pyl trimethy 20.4 1.5E+02 0.0033 24.5 3.7 37 36-72 312-349 (489)
192 COG3453 Uncharacterized protei 20.1 1.8E+02 0.004 19.9 3.5 39 36-74 47-86 (130)
193 PRK12483 threonine dehydratase 20.1 1.1E+02 0.0024 25.4 2.9 20 35-54 96-115 (521)
194 cd06525 GH25_Lyc-like Lyc mura 20.0 2.5E+02 0.0054 19.3 4.4 28 45-73 19-46 (184)
No 1
>PLN02584 5'-methylthioadenosine nucleosidase
Probab=99.93 E-value=1.1e-25 Score=166.80 Aligned_cols=99 Identities=72% Similarity=0.991 Sum_probs=89.1
Q ss_pred ceeEEEeeeCCccccChHHHHHHHhcCCcEeehhHHHHHHHHHHCCCCEEEEEeeecCCCCCchhHHHHHHHHHHHHHHH
Q 034258 2 VIEVCKLSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKPTAEEFMQNLVAVTAAL 81 (100)
Q Consensus 2 ~v~~G~i~SgD~fi~~~~~~~~l~~~~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~~~~~~~f~~~~~~a~~~s~~~ 81 (100)
.++.|+++|||+|+.+.+..+.+.+.+++++|||+||+||+|+.+|+||++||+|||.++++.++|.+|.......++.+
T Consensus 151 ~~~~G~i~SgD~F~~~~~~~~~~~~~~a~~vDME~aAia~va~~~gvp~~~IR~ISD~~~~~~~~~~ef~~~~~~a~~~~ 230 (249)
T PLN02584 151 GLKEGVLSTGNSLDMTEQDEESIKANDATVKDMEGAAVAYVADLLKVPAIFVKAVTDIVDGDKPTAEEFLENLSAAAAAL 230 (249)
T ss_pred CCeEEEEEEeCEEeCCHHHHHHHHHcCCcEEechHHHHHHHHHHhCCCEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHH
Confidence 46899999999999887766666656999999999999999999999999999999999877667888888888888888
Q ss_pred HHHHHHHhhhhcCccccCC
Q 034258 82 EQSVSQVIDFINGKRFSEL 100 (100)
Q Consensus 82 ~~~~~~~~~~i~~~~~~~~ 100 (100)
...+++++++|+|||+|+|
T Consensus 231 ~~~l~~~~~~~~~~~~~~~ 249 (249)
T PLN02584 231 QGAVPKVLDFISGKCLSEL 249 (249)
T ss_pred HHHHHHHHHHhcCCccccC
Confidence 8899999999999999987
No 2
>PRK06714 S-adenosylhomocysteine nucleosidase; Validated
Probab=99.93 E-value=1.2e-25 Score=165.46 Aligned_cols=89 Identities=22% Similarity=0.186 Sum_probs=83.6
Q ss_pred ceeEEEeeeCCccccChHHHHHHHhc-CCcEeehhHHHHHHHHHHCCCCEEEEEeeecCCCCCch-hHHHHHHHHHHHHH
Q 034258 2 VIEVCKLSTGDSLDMSSQDETSITAN-DATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKP-TAEEFMQNLVAVTA 79 (100)
Q Consensus 2 ~v~~G~i~SgD~fi~~~~~~~~l~~~-~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~~~~~~-~f~~~~~~a~~~s~ 79 (100)
+++.|+++|||.|+.+++.++++.+. +++++|||+||+||+|+.+++||++||+|||.++++.. +|++|+..|+++++
T Consensus 139 ~~~~G~i~SgD~Fv~~~~~~~~l~~~~~a~~vdME~aAvA~vc~~~~vP~l~IR~ISD~a~~~~~~~~~~f~~~aa~~sa 218 (236)
T PRK06714 139 PIHFGTFLSGDQRIRSSEMRYLLHTVYGALAVDQEVAAFAYVCQINKKPFLCLKAASDQANDKTKEEQKIFKMLACERAC 218 (236)
T ss_pred CeEEeEEEecCeecCCHHHHHHHHHHCCCeEEEehHHHHHHHHHHhCCCEEEEEEeccCCCCccccCHHHHHHHHHHHHH
Confidence 47899999999999988888888776 99999999999999999999999999999999998877 99999999999999
Q ss_pred HHHHHHHHHhh
Q 034258 80 ALEQSVSQVID 90 (100)
Q Consensus 80 ~~~~~~~~~~~ 90 (100)
++++.+++.++
T Consensus 219 ~~~~~~l~~~~ 229 (236)
T PRK06714 219 EHLIAFLRVYE 229 (236)
T ss_pred HHHHHHHHHhH
Confidence 99999999885
No 3
>PRK14697 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Provisional
Probab=99.92 E-value=1.2e-24 Score=159.33 Aligned_cols=88 Identities=18% Similarity=0.330 Sum_probs=80.3
Q ss_pred ceeEEEeeeCCccccChHHHHHHHhc-CCcEeehhHHHHHHHHHHCCCCEEEEEeeecCCCCCch-hHHHHHHHHHHHHH
Q 034258 2 VIEVCKLSTGDSLDMSSQDETSITAN-DATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKP-TAEEFMQNLVAVTA 79 (100)
Q Consensus 2 ~v~~G~i~SgD~fi~~~~~~~~l~~~-~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~~~~~~-~f~~~~~~a~~~s~ 79 (100)
+++.|+++|||.|+.+++.++.+.+. +++++|||+||+||+|+.+|+||++||+|||.++++.. +|++|...+++++.
T Consensus 138 ~~~~G~i~SgD~fi~~~~~~~~l~~~~~~~~vdME~aAva~v~~~~~vpfl~iR~ISD~a~~~~~~~~~~~~~~aa~~~~ 217 (233)
T PRK14697 138 EIHEGRIVSGECFVEDSKLKAKLIDEYAPHCTEMEGAAIGHVAYINEVPFLVIRCISDSADDEAQISYDDFAKTAANYCS 217 (233)
T ss_pred cEEEeEEEEcCeecCCHHHHHHHHHhcCCeEEEehHHHHHHHHHHcCCCEEEEEEeccCCCCCCcCCHHHHHHHHHHHHH
Confidence 47899999999999998888888776 99999999999999999999999999999999998877 99999999999999
Q ss_pred HHHHHHHHHh
Q 034258 80 ALEQSVSQVI 89 (100)
Q Consensus 80 ~~~~~~~~~~ 89 (100)
+++..+++.+
T Consensus 218 ~~~~~~l~~~ 227 (233)
T PRK14697 218 EIIVEMLKNI 227 (233)
T ss_pred HHHHHHHHHh
Confidence 9877666544
No 4
>TIGR01704 MTA/SAH-Nsdase 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase. There are homologs of this enzyme in plants, some of which score between trusted and noise cutoffs here, but there is no experimental evidence to validate this function at this time.
Probab=99.91 E-value=4.9e-24 Score=155.26 Aligned_cols=88 Identities=25% Similarity=0.339 Sum_probs=81.6
Q ss_pred ceeEEEeeeCCccccChHHHHHHHhc--CCcEeehhHHHHHHHHHHCCCCEEEEEeeecCCCCCch-hHHHHHHHHHHHH
Q 034258 2 VIEVCKLSTGDSLDMSSQDETSITAN--DATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKP-TAEEFMQNLVAVT 78 (100)
Q Consensus 2 ~v~~G~i~SgD~fi~~~~~~~~l~~~--~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~~~~~~-~f~~~~~~a~~~s 78 (100)
+++.|+++|||.|+.+++.+++++++ +++++|||++|++++|+.+|+||++||+|||.++++.. +|++|...+++.+
T Consensus 138 ~~~~G~i~T~d~f~~~~~~~~~l~~~~~~~~~vdME~aAva~va~~~~ip~~~iR~ISD~a~~~~~~~~~~~~~~aa~~~ 217 (228)
T TIGR01704 138 NAVRGLIVSGDAFINGSVGLAKIRHNFPQAIAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQS 217 (228)
T ss_pred CeEEEEEEEcChhcCCHHHHHHHHHHCCcccEecccHHHHHHHHHHhCCCEEEEEEecccCCCccccCHHHHHHHHHHHH
Confidence 57899999999999999888888775 89999999999999999999999999999999998877 9999999999999
Q ss_pred HHHHHHHHHHh
Q 034258 79 AALEQSVSQVI 89 (100)
Q Consensus 79 ~~~~~~~~~~~ 89 (100)
++++..+++.+
T Consensus 218 ~~~~~~~~~~~ 228 (228)
T TIGR01704 218 SLMVESLVQKL 228 (228)
T ss_pred HHHHHHHHHhC
Confidence 99999988753
No 5
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.90 E-value=2e-23 Score=164.60 Aligned_cols=88 Identities=18% Similarity=0.339 Sum_probs=81.8
Q ss_pred ceeEEEeeeCCccccChHHHHHHHhc-CCcEeehhHHHHHHHHHHCCCCEEEEEeeecCCCCCch-hHHHHHHHHHHHHH
Q 034258 2 VIEVCKLSTGDSLDMSSQDETSITAN-DATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKP-TAEEFMQNLVAVTA 79 (100)
Q Consensus 2 ~v~~G~i~SgD~fi~~~~~~~~l~~~-~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~~~~~~-~f~~~~~~a~~~s~ 79 (100)
+++.|+|+|||.|+.+++.++.+.+. +++++|||+||+||+|+.+|+||++||+|||.++++.. +|++|...|+++++
T Consensus 138 ~~~~G~i~sgd~f~~~~~~~~~l~~~~~a~~veME~aava~va~~~~vp~~~iR~iSD~a~~~~~~~~~~~~~~a~~~~~ 217 (459)
T PRK06698 138 EIHEGRIVSGECFVEDSKLKAKLIDEYAPHCTEMEGAAIGHVAYINEVPFLVIRCISDSADDEAQISYDDFAKTAANYCS 217 (459)
T ss_pred cEEEeeEEecCeecCCHHHHHHHHHHcCCcEEehhhHHHHHHHHHcCCCEEEEEEeccCCCCCCccCHHHHHHHHHHHHH
Confidence 57999999999999998888888776 99999999999999999999999999999999998887 99999999999999
Q ss_pred HHHHHHHHHh
Q 034258 80 ALEQSVSQVI 89 (100)
Q Consensus 80 ~~~~~~~~~~ 89 (100)
++++++++.+
T Consensus 218 ~~v~~~l~~~ 227 (459)
T PRK06698 218 EIIVEMLKTI 227 (459)
T ss_pred HHHHHHHHHh
Confidence 9977777755
No 6
>PRK07164 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Provisional
Probab=99.90 E-value=3.1e-23 Score=151.27 Aligned_cols=87 Identities=17% Similarity=0.123 Sum_probs=78.7
Q ss_pred eeEEEeeeCCccccChHHHHHHHhc-CCcEeehhHHHHHHHHHHCCCCEEEEEeeecCCCCCch--hHHHHHHHHHHHHH
Q 034258 3 IEVCKLSTGDSLDMSSQDETSITAN-DATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKP--TAEEFMQNLVAVTA 79 (100)
Q Consensus 3 v~~G~i~SgD~fi~~~~~~~~l~~~-~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~~~~~~--~f~~~~~~a~~~s~ 79 (100)
++.|.++|||+|+.+++.++.+++. ++++||||+||+||+|+.+++||++||+|||.++++.+ +|++|++.+++.++
T Consensus 129 ~~~~~i~SgD~Fi~~~~~~~~l~~~~~a~~vDME~aAiaqv~~~~~vpf~~ir~ISD~~~~~~~~~~~~~~~~~a~~~~~ 208 (218)
T PRK07164 129 FNKIHLGSSNSFIFDLDKLKIIKDFIFVSFFDMEAFALAQVCFKNKVKFYCIKYVSDFIENNSDIEIVNNNIKKGSKKAL 208 (218)
T ss_pred CcEEEEEeCCccCCCHHHHHHHHhcCCCcEEEchHHHHHHHHHHcCCCEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4578999999999998888888777 99999999999999999999999999999999976654 68999999999999
Q ss_pred HHHHHHHHHh
Q 034258 80 ALEQSVSQVI 89 (100)
Q Consensus 80 ~~~~~~~~~~ 89 (100)
+++..+++.+
T Consensus 209 ~~v~~~l~~~ 218 (218)
T PRK07164 209 EFIFELLENI 218 (218)
T ss_pred HHHHHHHhhC
Confidence 9998888753
No 7
>COG0775 Pfs Nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=99.89 E-value=1.1e-22 Score=149.53 Aligned_cols=88 Identities=26% Similarity=0.388 Sum_probs=80.1
Q ss_pred ceeEEEeeeCCccccChHHHHHHHhc--CCcEeehhHHHHHHHHHHCCCCEEEEEeeecCCCCCch--hHHHHHHHHHHH
Q 034258 2 VIEVCKLSTGDSLDMSSQDETSITAN--DATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKP--TAEEFMQNLVAV 77 (100)
Q Consensus 2 ~v~~G~i~SgD~fi~~~~~~~~l~~~--~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~~~~~~--~f~~~~~~a~~~ 77 (100)
+++.|+|+|||+|+.+.+...++++. ++.++|||++||||+|+.+++||+.||+|||.+++++. +|++|++.+++.
T Consensus 142 ~~~~Gli~tgd~fv~~~~~~~~~~~~~~~a~aveME~aaia~v~~~~~vP~~~ir~ISD~a~~~~~~~~~~~f~~~aa~~ 221 (234)
T COG0775 142 RLRTGLIVTGDRFVTLGEPVAKLRKAFPDALAVEMEGAAIAQVCYRFGVPFLVLRAISDIADGGADPVSFDEFLAEAAKQ 221 (234)
T ss_pred ceeEEEEEcchhhhhcchhHHHHHHHCCCcEEEEecHHHHHHHHHHhCCCEEEEEEeccCCCCcCCcccHHHHHHHHHHH
Confidence 67899999999999998876666665 99999999999999999999999999999999988753 999999999999
Q ss_pred HHHHHHHHHHHh
Q 034258 78 TAALEQSVSQVI 89 (100)
Q Consensus 78 s~~~~~~~~~~~ 89 (100)
++.+++.+++.+
T Consensus 222 s~~~~~~~~~~l 233 (234)
T COG0775 222 SALVLLSALEKL 233 (234)
T ss_pred HHHHHHHHHHhc
Confidence 999988888765
No 8
>PRK05634 nucleosidase; Provisional
Probab=99.87 E-value=6.2e-22 Score=141.19 Aligned_cols=79 Identities=29% Similarity=0.310 Sum_probs=71.6
Q ss_pred eEEEeeeCCccccChHHHHHHHhcCCcEeehhHHHHHHHHHHCCCCEEEEEeeecCCCCCch-hHHHHHHHHHHHHHHHH
Q 034258 4 EVCKLSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKP-TAEEFMQNLVAVTAALE 82 (100)
Q Consensus 4 ~~G~i~SgD~fi~~~~~~~~l~~~~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~~~~~~-~f~~~~~~a~~~s~~~~ 82 (100)
..|.+.|||.|+.+++.++++.+ +++++|||++|++|+|+.+|+||++||+|||.++++.. +|++|+..|++++++++
T Consensus 103 ~~g~i~sgD~fvs~~~~~~~l~~-~a~~vDME~aAva~va~~~~vPf~~iR~ISD~a~~~~~~~~~~~~~~aa~~~~~~~ 181 (185)
T PRK05634 103 DGAVLATGDAFISDTATRDRLAQ-RADLVDMEGYAVAAVAAEFGVPCRLVKHVSDSADESALGSWPEAVDASARELGEWL 181 (185)
T ss_pred CCceEecCCceecCHHHHHHHhc-cCeEEecHHHHHHHHHHHhCCCEEEEEEeccCCCCcccccHHHHHHHHHHHHHHHH
Confidence 35889999999999988877765 78999999999999999999999999999999998877 99999999999988764
Q ss_pred H
Q 034258 83 Q 83 (100)
Q Consensus 83 ~ 83 (100)
.
T Consensus 182 ~ 182 (185)
T PRK05634 182 A 182 (185)
T ss_pred H
Confidence 3
No 9
>TIGR01705 MTA/SAH-nuc-hyp 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, putative. This enzyme is involved in the recycling of the components of S-adenosylmethionine after it has donated one of its two non-ribose sulfur ligands to an acceptor. In the case of 5'-methylthioadenosine this represents the first step of the methionine salvage pathway in bacteria. This enzyme is widely distributed in bacteria.
Probab=99.86 E-value=3.4e-21 Score=140.39 Aligned_cols=78 Identities=21% Similarity=0.219 Sum_probs=69.3
Q ss_pred eeEEEeeeCCccccChHHHHHHHhcCCcEeehhHHHHHHHHHHCCCCEEEEEeeecCCCCCch--hHHHHHHHHHHHHHH
Q 034258 3 IEVCKLSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKP--TAEEFMQNLVAVTAA 80 (100)
Q Consensus 3 v~~G~i~SgD~fi~~~~~~~~l~~~~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~~~~~~--~f~~~~~~a~~~s~~ 80 (100)
++.|.++|||.| .+.+++++|||++|+||+|+.+|+||++||+|||.++++.. +|++|++.+++++++
T Consensus 127 ~~~g~~vSgd~f----------~~~~a~~vdME~aAia~vc~~~~vpf~~iR~ISD~a~~~~~~~df~~f~~~aa~~sa~ 196 (212)
T TIGR01705 127 STGGAIISGAAY----------DAIAADMVDMETFACLRACQLFDVPLIGLRGISDGAADLNHVDDWTAYLDIIDEKLAD 196 (212)
T ss_pred cceeEEEECcch----------hhCCceEEechHHHHHHHHHHcCCCEEEEEEEecCCCCccchhhHHHHHHHHHHHHHH
Confidence 567888888887 12389999999999999999999999999999999876654 699999999999999
Q ss_pred HHHHHHHHhh
Q 034258 81 LEQSVSQVID 90 (100)
Q Consensus 81 ~~~~~~~~~~ 90 (100)
++..+++.++
T Consensus 197 ~v~~ll~~~~ 206 (212)
T TIGR01705 197 AVDRLCQAIE 206 (212)
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 10
>PRK05584 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=99.85 E-value=8.6e-21 Score=137.40 Aligned_cols=88 Identities=26% Similarity=0.413 Sum_probs=81.6
Q ss_pred ceeEEEeeeCCccccChHHHHHHHhc--CCcEeehhHHHHHHHHHHCCCCEEEEEeeecCCCCCch-hHHHHHHHHHHHH
Q 034258 2 VIEVCKLSTGDSLDMSSQDETSITAN--DATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKP-TAEEFMQNLVAVT 78 (100)
Q Consensus 2 ~v~~G~i~SgD~fi~~~~~~~~l~~~--~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~~~~~~-~f~~~~~~a~~~s 78 (100)
+++.|.++|||.|+.+++.++.++++ +++++|||++|++++|+.+|+||++||+|||.+++++. +|+++...|++.+
T Consensus 139 ~~~~G~~~s~d~f~~~~~~~~~l~~~~~~~~~veME~aa~a~va~~~~vp~~~ir~vSd~~~~~~~~~~~~~~~~a~~~~ 218 (230)
T PRK05584 139 NVHRGLIASGDQFIAGAEKVAAIRAEFPDALAVEMEGAAIAQVCHEFGVPFVVVRAISDTADDEAHVSFDEFLAVAAKYS 218 (230)
T ss_pred cEEEEEEEEcchhcCCHHHHHHHHHhCCCCeEEechHHHHHHHHHHcCCCEEEEEEeccCCCCcccccHHHHHHHHHHHH
Confidence 57899999999999998888888774 99999999999999999999999999999999998887 9999999999999
Q ss_pred HHHHHHHHHHh
Q 034258 79 AALEQSVSQVI 89 (100)
Q Consensus 79 ~~~~~~~~~~~ 89 (100)
++++..+++.+
T Consensus 219 ~~~~~~~~~~~ 229 (230)
T PRK05584 219 ANILKRMLEKL 229 (230)
T ss_pred HHHHHHHHHhc
Confidence 99998888754
No 11
>PRK06026 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=99.84 E-value=1.1e-20 Score=137.79 Aligned_cols=82 Identities=24% Similarity=0.273 Sum_probs=70.7
Q ss_pred EEEeeeCCccccChHHHHHHHhcCCcEeehhHHHHHHHHHHCCCCEEEEEeeecCCCCCch--hHHHHHHHHHHHHHHHH
Q 034258 5 VCKLSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKP--TAEEFMQNLVAVTAALE 82 (100)
Q Consensus 5 ~G~i~SgD~fi~~~~~~~~l~~~~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~~~~~~--~f~~~~~~a~~~s~~~~ 82 (100)
.|.+.|||.|+++.. . .+.+++++|||+||+||+|+.+++||++||+|||.++++.. +|++|+..+++++++++
T Consensus 123 ~~~i~tgg~~vsgd~-f---~~~~a~~vdMEgaAvAqVc~~~~vPfl~iR~ISD~a~~~a~~~df~~f~~~aa~~sa~~v 198 (212)
T PRK06026 123 EASLSTGGNIVSGAA-Y---DAIDADMVDMETYAVLRACQAFGVPLIGLRGISDGAAELKHVGDWTEYLHVIDEKLAGAV 198 (212)
T ss_pred cccceecCEEeeCch-h---hhcCCeEEechHHHHHHHHHHcCCCEEEEEEEecCCCcccchhhHHHHHHHHHHHHHHHH
Confidence 466778888887642 1 33499999999999999999999999999999999987765 69999999999999999
Q ss_pred HHHHHHhh
Q 034258 83 QSVSQVID 90 (100)
Q Consensus 83 ~~~~~~~~ 90 (100)
..+++.++
T Consensus 199 ~~~~~~~~ 206 (212)
T PRK06026 199 DRLERALE 206 (212)
T ss_pred HHHHHHHh
Confidence 99988774
No 12
>PRK07077 hypothetical protein; Provisional
Probab=99.84 E-value=2.3e-20 Score=137.99 Aligned_cols=80 Identities=15% Similarity=0.117 Sum_probs=71.9
Q ss_pred ceeEEEeeeCCccccChHHHHHHHhc-CCcEeehhHHHHHHHHHHCCCCEEEEEeeecCCC------------CCch-hH
Q 034258 2 VIEVCKLSTGDSLDMSSQDETSITAN-DATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVD------------GDKP-TA 67 (100)
Q Consensus 2 ~v~~G~i~SgD~fi~~~~~~~~l~~~-~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~~------------~~~~-~f 67 (100)
+++.|+|+|||.|+.+.+.++.+++. ++.+||||++|++++|+.+|+||++||+|||.++ ++.. +|
T Consensus 110 ~v~~G~i~T~D~~v~~~~~k~~L~~~~gA~aVDMEsaAvA~va~~~giPf~viR~ISD~a~~~LP~~~~~~~~~~g~~~~ 189 (238)
T PRK07077 110 RVVRGGLAGVEAPVVGAAAKAALHRATGALAVDMESHIAAAFAAARGLPFAACRVIVDPAWRTLPAAATAGLRDDGSTDI 189 (238)
T ss_pred ceEEEEEEecCeeecCHHHHHHHHHhCCCEEEehhHHHHHHHHHHcCCCEEEEEEEEeccCccCchhHHhhcCCCcCcCH
Confidence 58899999999999999999999887 9999999999999999999999999999999999 4555 88
Q ss_pred HHHHHHHHHHHHHH
Q 034258 68 EEFMQNLVAVTAAL 81 (100)
Q Consensus 68 ~~~~~~a~~~s~~~ 81 (100)
..++...+++...+
T Consensus 190 ~~~l~~l~r~P~~i 203 (238)
T PRK07077 190 LPILRGLARQPSQL 203 (238)
T ss_pred HHHHHHHHhChHHH
Confidence 88888888777544
No 13
>PRK08236 hypothetical protein; Provisional
Probab=99.81 E-value=1.6e-19 Score=131.25 Aligned_cols=67 Identities=19% Similarity=0.219 Sum_probs=60.4
Q ss_pred ceeEEEeeeCCccccChHHHHHHHhc--CCcEeehhHHHHHHHHHHCCCCEEEEEeeecCCCCCch-hHH
Q 034258 2 VIEVCKLSTGDSLDMSSQDETSITAN--DATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKP-TAE 68 (100)
Q Consensus 2 ~v~~G~i~SgD~fi~~~~~~~~l~~~--~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~~~~~~-~f~ 68 (100)
+++.|+++|||+|+.+++.++.|.++ ++.++|||++|+||+|+.+|+||++||+|||.+++... +|+
T Consensus 127 ~~~~G~i~Tgd~~v~~~~~~~~l~~~~~~a~~vdMEgaAvA~vc~~~~vPf~~iR~ISD~~~~rd~~~W~ 196 (212)
T PRK08236 127 GATAGPVLTVSTVTGTAETAAALAARHPDAVAEAMEGFGVAEAAAAAGLPVLELRAISNPVGPRDRAAWR 196 (212)
T ss_pred CeEEeeEEecCeEeCCHHHHHHHHHHCCCceeehhHHHHHHHHHHHhCCCEEEEEEecCCCCccchhccC
Confidence 57899999999999999999988775 79999999999999999999999999999999987554 443
No 14
>TIGR03664 fut_nucase futalosine nucleosidase. This enzyme catalyzes the conversion of futalosine to de-hypoxanthine futalosine in a pathway for the biosynthesis of menaquinone distinct from the pathway observed in E. coli.
Probab=99.79 E-value=2.2e-19 Score=130.82 Aligned_cols=70 Identities=19% Similarity=0.201 Sum_probs=63.7
Q ss_pred ceeEEEeeeCCccccChHHHHHHHhc-CCcEeehhHHHHHHHHHHCCCCEEEEEeeecCCCCCch-hHHHHH
Q 034258 2 VIEVCKLSTGDSLDMSSQDETSITAN-DATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKP-TAEEFM 71 (100)
Q Consensus 2 ~v~~G~i~SgD~fi~~~~~~~~l~~~-~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~~~~~~-~f~~~~ 71 (100)
+++.|+++|||.|+.+.+.++.+.++ +++++|||++|++++|+.+|+||++||+|||.++++.. +|+.+.
T Consensus 138 ~~~~G~i~T~d~~~~~~~~~~~l~~~~~a~aveMEsaava~va~~~~vP~~~IR~ISD~~~~~~~~~w~~~~ 209 (222)
T TIGR03664 138 PVARGPFLTVSTVSGTAARAEALARRFGAVAENMEGFAVALAALRYGVPFLELRGISNLVGPRDRSRWRIKE 209 (222)
T ss_pred ceeEeeeeeecceeCCHHHHHHHHHhcchHHHHhhHHHHHHHHHHhCCCEEEEEeeccCCCCcchhhcChHH
Confidence 57999999999999998888888777 99999999999999999999999999999999998776 776654
No 15
>TIGR03468 HpnG hopanoid-associated phosphorylase. The sequences in this family are members of the pfam01048 family of phosphorylases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene is adjacent to the genes PhnA-E and squalene-hopene cyclase (which would be HpnF) in Zymomonas mobilis and their association with hopene biosynthesis has been noted in the literature. Extending the gene symbol sequence, we suggest the symbol HpnG for the product of this gene. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species.
Probab=99.78 E-value=9.3e-19 Score=126.72 Aligned_cols=84 Identities=23% Similarity=0.292 Sum_probs=70.2
Q ss_pred ceeEEEeeeCCccccChHHHHHHHhc-CCcEeehhHHHHHHHHHHCCCCEEEEEeeecCCCCCch-hHHHHHH-HHHHHH
Q 034258 2 VIEVCKLSTGDSLDMSSQDETSITAN-DATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKP-TAEEFMQ-NLVAVT 78 (100)
Q Consensus 2 ~v~~G~i~SgD~fi~~~~~~~~l~~~-~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~~~~~~-~f~~~~~-~a~~~s 78 (100)
+++.|+++|+|.|+.+++.++.+.+. ++++||||++|++++|+.+|+||++||+|||.++++.+ +|.+++. ....+.
T Consensus 99 ~~~~G~~~t~d~~~~~~~~~~~l~~~~ga~aVdMEsaava~va~~~gip~~~ir~ISD~a~~~~~~~~~~~~~~~g~~~~ 178 (212)
T TIGR03468 99 RVHRGVLAASDTVVSTAAAKAALARATGAAAVDMESGAVAAVAAAAGLPFAVIRVISDPADRALPRAALDALRPDGSTAL 178 (212)
T ss_pred CeEEEEEEEeCeEecCHHHHHHHHHhcCCcEEeChHHHHHHHHHHcCCCEEEEEEEeecCCCcCchhHHHhcCcccCccH
Confidence 57899999999999988888878666 99999999999999999999999999999999999887 8988873 333334
Q ss_pred HHHHHHH
Q 034258 79 AALEQSV 85 (100)
Q Consensus 79 ~~~~~~~ 85 (100)
..++..+
T Consensus 179 ~~ll~~l 185 (212)
T TIGR03468 179 AALLRGL 185 (212)
T ss_pred HHHHHHH
Confidence 4444433
No 16
>PF01048 PNP_UDP_1: Phosphorylase superfamily; InterPro: IPR000845 Phosphorylases in this entry include: Purine nucleoside phosphorylase (2.4.2.1 from EC) (PNP) from most bacteria (gene deoD), which catalyses the cleavage of guanosine or inosine to respective bases and sugar-1-phosphate molecules []. Uridine phosphorylase (2.4.2.3 from EC) (UdRPase) from bacteria (gene udp) and mammals, which catalyses the cleavage of uridine into uracil and ribose-1-phosphate, the products of the reaction are used either as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis []. 5'-methylthioadenosine phosphorylase (2.4.2.28 from EC) (MTA phosphorylase) from Sulfolobus solfataricus []. Purine nucleoside phosphorylase (2.4.2.1 from EC) (PNP) from mammals as well as from some bacteria (gene deoD). This enzyme catalyzes the cleavage of guanosine or inosine to respective bases and sugar-1-phosphate molecules []. 5'-methylthioadenosine phosphorylase (2.4.2.28 from EC) (MTA phosphorylase) from eukaryotes []. ; GO: 0003824 catalytic activity, 0009116 nucleoside metabolic process; PDB: 3OZE_A 1K27_A 1CB0_A 1CG6_A 1SD1_A 3LN5_C 3OZD_B 3OZC_A 1SD2_A 1U1G_C ....
Probab=99.73 E-value=3.6e-17 Score=117.50 Aligned_cols=86 Identities=27% Similarity=0.358 Sum_probs=71.7
Q ss_pred ceeEEEeeeCCccccChHHHHHHHhc-CCcEeehhHHHHHHHHHHCCCCEEEEEeeecCCCC----Cc--hhHHHHHHHH
Q 034258 2 VIEVCKLSTGDSLDMSSQDETSITAN-DATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDG----DK--PTAEEFMQNL 74 (100)
Q Consensus 2 ~v~~G~i~SgD~fi~~~~~~~~l~~~-~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~~~----~~--~~f~~~~~~a 74 (100)
+++.|+++|+|.|+.+.+.+..+.+. +++++|||++|++++|+++++||++||+|||.++. +. ..++++...+
T Consensus 142 ~~~~G~~~s~~~~~~~~~~~~~~~~~~g~~~vdME~aa~~~~a~~~~ip~~~i~~isD~~~~~~~~~~~~~~~~~~~~~a 221 (234)
T PF01048_consen 142 PVHEGPIASGDSFYRETEAEIELLQKFGADAVDMESAAVAQAARERGIPFIAIRGISDYADGGDDDEWTFEEFKEFLQLA 221 (234)
T ss_dssp TEEEEEEEEESSSSGSHHHHHHHHHHTTEEEEESSHHHHHHHHHHTT-EEEEEEEEEEETTTTSSSSSHHHHHHHHHHHH
T ss_pred ccccceEEEEeeeccchhhHHHHHHhcccccccchHHHHHHHHHHcCCCEEEEEEEEcCCccCCCCCCCHHHHHHHHHHH
Confidence 58899999999999998665555444 99999999999999999999999999999996653 22 2788888888
Q ss_pred HHHHHHHHHHHHH
Q 034258 75 VAVTAALEQSVSQ 87 (100)
Q Consensus 75 ~~~s~~~~~~~~~ 87 (100)
++++..++..+++
T Consensus 222 ~~~~~~~~~~~l~ 234 (234)
T PF01048_consen 222 AENAAAILEELLK 234 (234)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9888888877764
No 17
>PRK13374 purine nucleoside phosphorylase; Provisional
Probab=99.72 E-value=4.8e-17 Score=119.41 Aligned_cols=63 Identities=17% Similarity=0.139 Sum_probs=56.0
Q ss_pred ceeEEEeeeCCccccChHHHHHHHhc-CCcEeehhHHHHHHHHHHCCCCEEEEEeeecCCCCCc
Q 034258 2 VIEVCKLSTGDSLDMSSQDETSITAN-DATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDK 64 (100)
Q Consensus 2 ~v~~G~i~SgD~fi~~~~~~~~l~~~-~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~~~~~ 64 (100)
+++.|+++|||.|+.+.+.+..+.+. +++++|||++|++++|+.+|+||++||+|||.+.++.
T Consensus 148 ~~~~G~i~T~D~F~~~~~~~~~~~~~~g~~~vEME~aAl~~va~~~gip~~~i~~isD~~~~~~ 211 (233)
T PRK13374 148 PVKVGNVFSSDLFYDPDEDAIEAMERFGILGVDMEVAGLYGLAAYLGAEALAILTVSDHIITGE 211 (233)
T ss_pred CeEEEEEEEcCcccCCChHHHHHHHHcCCeEEehhHHHHHHHHHHcCCCEEEEEEEEeeeccCC
Confidence 58999999999999987666555444 9999999999999999999999999999999998654
No 18
>TIGR01700 PNPH purine nucleoside phosphorylase I, inosine and guanosine-specific. Several metazoan enzymes (PNPH) are well characterized including the human and bovine enzymes which have been crystallized.
Probab=99.71 E-value=1.1e-16 Score=118.60 Aligned_cols=87 Identities=13% Similarity=0.087 Sum_probs=74.9
Q ss_pred ceeEEE--eeeCCccccChHHHHHHHhcCCcEeehhHHHHHHHHHHCCCCEEEEEeeecCCCC--Cch-hHHHHHHHHHH
Q 034258 2 VIEVCK--LSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDG--DKP-TAEEFMQNLVA 76 (100)
Q Consensus 2 ~v~~G~--i~SgD~fi~~~~~~~~l~~~~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~~~--~~~-~f~~~~~~a~~ 76 (100)
+++.|+ +.|||+|.+..+. +.+++.++++||||+++++++|+++|+|+++||.|||.+++ +.+ +|.+++..+++
T Consensus 156 ~~~~G~y~~~sGp~F~t~aE~-~~~~~~gad~V~Me~aaea~~A~~~gv~~~~i~~vsd~a~~~~~~~~~~~~~v~~~~~ 234 (249)
T TIGR01700 156 PLQEGVYVMLGGPSYETPAEV-RLLRTLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKAAGILDYELSVHEEVMEAAK 234 (249)
T ss_pred ccceEEEEEeeCCCcCCHHHH-HHHHHcCCCEEecchHHHHHHHHHcCCcEEEEEEEeecccccCcCCCCHHHHHHHHHH
Confidence 578899 9999999976654 55555599999999999999999999999999999999984 445 99999999999
Q ss_pred HHHHHHHHHHHHh
Q 034258 77 VTAALEQSVSQVI 89 (100)
Q Consensus 77 ~s~~~~~~~~~~~ 89 (100)
++++.+..+++.+
T Consensus 235 ~~~~~~~~ll~~~ 247 (249)
T TIGR01700 235 QAAEKLEKFVSLL 247 (249)
T ss_pred HHHHHHHHHHHHH
Confidence 9998887777643
No 19
>TIGR01697 PNPH-PUNA-XAPA inosine guanosine and xanthosine phosphorylase family. Sequences from Clostridium and Thermotoga fall between these last two clades and are uncharacterized with respect to substrate range and operon.
Probab=99.70 E-value=2.5e-16 Score=116.41 Aligned_cols=86 Identities=20% Similarity=0.211 Sum_probs=71.0
Q ss_pred ceeEEE--eeeCCccccChHHHHHHHhcCCcEeehhHHHHHHHHHHCCCCEEEEEeeecCCCC--Cch-hHHHHHHHHHH
Q 034258 2 VIEVCK--LSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDG--DKP-TAEEFMQNLVA 76 (100)
Q Consensus 2 ~v~~G~--i~SgD~fi~~~~~~~~l~~~~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~~~--~~~-~f~~~~~~a~~ 76 (100)
++|.|+ +.|||+|.+..+ .+.+++.++++||||+++++++|+++|+||++||+|||.+++ +.+ +|+++.+.+ +
T Consensus 156 ~~~~G~~~~~~G~~f~t~~e-~~~~~~~g~~~VeME~aa~a~lA~~~gv~~~~i~~Vsd~a~g~~~~~~~~~~~~~~~-~ 233 (248)
T TIGR01697 156 PLTEGVYVMVSGPSYETPAE-IRMLRILGADAVGMSTVPEVIVARHCGIKVLAVSLITNMAAGITDVPLSHEEVLAAA-A 233 (248)
T ss_pred ceeeEEEEEEECCCcCCHHH-HHHHHHcCCeEEccChHHHHHHHHHCCCcEEEEEEEEecCcccCCCCCCHHHHHHHH-H
Confidence 578999 789999996654 455666699999999999999999999999999999999983 455 999877655 7
Q ss_pred HHHHHHHHHHHHh
Q 034258 77 VTAALEQSVSQVI 89 (100)
Q Consensus 77 ~s~~~~~~~~~~~ 89 (100)
++++++..+++.+
T Consensus 234 ~~~~~~~~ll~~~ 246 (248)
T TIGR01697 234 AAAERFISLLEDI 246 (248)
T ss_pred HHHHHHHHHHHHH
Confidence 7778777776643
No 20
>PRK05819 deoD purine nucleoside phosphorylase; Reviewed
Probab=99.68 E-value=3.5e-16 Score=114.80 Aligned_cols=63 Identities=17% Similarity=0.173 Sum_probs=55.2
Q ss_pred ceeEEEeeeCCccccChHHHHH-HHhcCCcEeehhHHHHHHHHHHCCCCEEEEEeeecCCCCCc
Q 034258 2 VIEVCKLSTGDSLDMSSQDETS-ITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDK 64 (100)
Q Consensus 2 ~v~~G~i~SgD~fi~~~~~~~~-l~~~~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~~~~~ 64 (100)
+++.|+++|+|.|+.+.+.+.. +++.++.++|||++|++++|+.+|+||++||+|||....+.
T Consensus 147 ~~~~G~v~T~D~f~~~~~~~~~~~~~~g~~~vEME~aAva~va~~~~ip~~~i~~isd~~~~~~ 210 (235)
T PRK05819 147 TVHVGNVFSADLFYNPDPEMFDVLEKYGVLGVEMEAAALYGLAAKYGVKALTILTVSDHIVTGE 210 (235)
T ss_pred cEEEEEEEecCcccCCCHHHHHHHHHcCCeEEeccHHHHHHHHHHhCCCEEEEEEEeeecccCC
Confidence 5799999999999998775544 44459999999999999999999999999999999886544
No 21
>TIGR00107 deoD purine-nucleoside phosphorylase, family 1 (deoD). Purine nucleoside phosphorylase (also called inosine phosphorylase) is a purine salvage enzyme. Purine nucleosides, such as guanosine, inosine, or xanthosine, plus orthophosphate, can be converted to their respective purine bases (guanine, hypoxanthine, or xanthine) plus ribose-1-phosphate. This family of purine nucleoside phosphorylase is restricted to the bacteria.
Probab=99.66 E-value=1.3e-15 Score=111.74 Aligned_cols=62 Identities=18% Similarity=0.147 Sum_probs=54.2
Q ss_pred ceeEEEeeeCCccccChHHH-HHHHhcCCcEeehhHHHHHHHHHHCCCCEEEEEeeecCCCCC
Q 034258 2 VIEVCKLSTGDSLDMSSQDE-TSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGD 63 (100)
Q Consensus 2 ~v~~G~i~SgD~fi~~~~~~-~~l~~~~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~~~~ 63 (100)
++|.|+++|||.|+.+...+ +.+++.+++++|||++|++++|+.+|+||++||+|||.....
T Consensus 144 ~~~~G~~~S~D~f~~~~~~~~~~~~~~g~~~vEME~aal~~va~~~~~~~~~i~~vsd~~~~~ 206 (232)
T TIGR00107 144 DFHVGNVFSADAFYQPDKDVFDLMAKYGILAVEMEAAALYANAAELGAKALTILTVSDHLVTH 206 (232)
T ss_pred CeEEEEEeEcCcccCCCHHHHHHHHHcCCeEEehhHHHHHHHHHHcCCcEEEEEEEEeecccC
Confidence 68999999999999876554 445555999999999999999999999999999999988543
No 22
>PRK07115 AMP nucleosidase; Provisional
Probab=99.62 E-value=6.1e-15 Score=110.13 Aligned_cols=61 Identities=15% Similarity=-0.019 Sum_probs=51.7
Q ss_pred ceeEEEeeeCCccc-cCh-HHHHHHHhcCCcEeehhHHHHHHHHHHCCCCEEEEEeeecCCCC
Q 034258 2 VIEVCKLSTGDSLD-MSS-QDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDG 62 (100)
Q Consensus 2 ~v~~G~i~SgD~fi-~~~-~~~~~l~~~~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~~~ 62 (100)
++|.|+++|+|.|+ ... +.++.|.+.+++++|||+||++++|+.+|+|+.+||+|||....
T Consensus 150 ~~~~G~v~StD~ff~~~~~~~~~~~~~~g~~avEME~AAl~~va~~~gv~~~~i~~isD~~~~ 212 (258)
T PRK07115 150 DYWTGTVYTTNRRFWEHDKEFKEYLYETRAQAIDMETATLFAAGFANNIPTGALLLISDLPLR 212 (258)
T ss_pred CeEEEEEEecCCCccCCcHHHHHHHHHcCCeEEehhHHHHHHHHHHcCCcEEEEEEEecccCC
Confidence 68999999999854 433 33455666699999999999999999999999999999999843
No 23
>TIGR01694 MTAP 5'-deoxy-5'-methylthioadenosine phosphorylase. In between the trusted and noise cutoffs are: 1) several archaeal sequences which appear to contain several residues characteristic of phosphorylases which act on guanosine or inosine (according to the crystal structure of MTAP and alignments). In any case, these residues are not conserved. 2) sequences from Mycobacterium tuberculosis and Streptomyces coelicolor which have better, although not perfect retention of the active site residues, but considering the general observation that bacteria utilize the MTA/SAH nucleotidase enzyme and a kinase to do this reaction, these have been excluded pending stronger evidence of their function, and 3) a sequence from Drosophila which appears to be a recent divergence (long branch in neighbor-joining trees) and lacks some of the conserved active site residues.
Probab=99.60 E-value=1.2e-14 Score=107.02 Aligned_cols=86 Identities=16% Similarity=0.105 Sum_probs=69.0
Q ss_pred cee-EEEee--eCCccccChHHHHHHHhcCCcEeehhHHHHHHHHHHCCCCEEEEEeeecCCCC--Cch-hHHHHHHHHH
Q 034258 2 VIE-VCKLS--TGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDG--DKP-TAEEFMQNLV 75 (100)
Q Consensus 2 ~v~-~G~i~--SgD~fi~~~~~~~~l~~~~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~~~--~~~-~f~~~~~~a~ 75 (100)
++| .|.++ +||+|.+.. ..+.+++.++++||||+++++++|+.+|+|+++||+|||.++. +.+ +|+++...+.
T Consensus 147 ~~~~~G~~~~~~G~~f~t~~-e~~~~~~~Ga~aVeME~aa~~~vA~~~gv~~~~i~~Vsd~a~~~~~~~~~~~e~~~~~~ 225 (241)
T TIGR01694 147 TVHDGGTYVCTEGPRFSTRA-ESRMFKSWGADIVGMTGVPEAVLARELELCYATLALVTDYDCWISADHVTAEEVEEVMG 225 (241)
T ss_pred cEEeceEEEeCcCCCcCCHH-HHHHHHHcCCeEEeccHHHHHHHHHHCCCCEEEEEEEeeccccCCCCCCCHHHHHHHHH
Confidence 467 69998 888998754 4466766699999999999999999999999999999998873 445 9999988887
Q ss_pred HHHHHHHHHHHHH
Q 034258 76 AVTAALEQSVSQV 88 (100)
Q Consensus 76 ~~s~~~~~~~~~~ 88 (100)
+....+.+.+.+.
T Consensus 226 ~~~~~~~~~~~~~ 238 (241)
T TIGR01694 226 ENVEKAKRILLEA 238 (241)
T ss_pred HHHHHHHHHHHHH
Confidence 7766554444433
No 24
>PRK08292 AMP nucleosidase; Provisional
Probab=99.60 E-value=1.3e-14 Score=116.01 Aligned_cols=62 Identities=21% Similarity=0.156 Sum_probs=52.5
Q ss_pred ceeEEEeeeCCccccCh---HHHHHHHhcCCcEeehhHHHHHHHHHHCCCCEEEEEeeecCCCCC
Q 034258 2 VIEVCKLSTGDSLDMSS---QDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGD 63 (100)
Q Consensus 2 ~v~~G~i~SgD~fi~~~---~~~~~l~~~~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~~~~ 63 (100)
++|.|+++|||.|+... +.++.+.+.+++++|||+|||+++|+.+|+|+++||+|||.....
T Consensus 374 ~~h~G~V~SgD~F~~e~~~~~l~~~~~~~gAlAVEMESAALa~va~~~gVP~gaIr~VSD~~~~~ 438 (489)
T PRK08292 374 RMRTGTVVTTDDRNWELRYSASALRFNQSRAVALDMESATIAANGYRFRVPYGTLLCVSDKPLHG 438 (489)
T ss_pred ceEEEEEEecCcCCCcCchHHHHHHhhhcCCEEEehhHHHHHHHHHHhCCCEEEEEEEEecCCCC
Confidence 58999999999997543 233455545999999999999999999999999999999998643
No 25
>TIGR01717 AMP-nucleosdse AMP nucleosidase. This model represents the AMP nucleosidase from proteobacteria but also including a sequence from Corynebacterium, a gram-positive organism. The species from E. coli has been most well studied.
Probab=99.59 E-value=1.6e-14 Score=115.29 Aligned_cols=62 Identities=23% Similarity=0.171 Sum_probs=53.1
Q ss_pred ceeEEEeeeCCcccc---ChHHHHHHHhcCCcEeehhHHHHHHHHHHCCCCEEEEEeeecCCCCC
Q 034258 2 VIEVCKLSTGDSLDM---SSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGD 63 (100)
Q Consensus 2 ~v~~G~i~SgD~fi~---~~~~~~~l~~~~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~~~~ 63 (100)
++|.|+++|+|.|+. +.+.++.++..+++++|||+|||+++|+.+|+|+.+||+|||.....
T Consensus 362 ~~h~G~V~StD~F~~el~~~~~~~~l~~~gAlAVEMESAALaava~~~gVP~gaLr~VSD~~l~~ 426 (477)
T TIGR01717 362 RLRTGTVLTTDDRNWELRYSASALRLNLSRAIAVDMESATIAAQGYRFRVPYGTLLCVSDKPLHG 426 (477)
T ss_pred ceEEEEEEecCcCcccCCCHHHHHHHHhCCCEEEehhHHHHHHHHHHhCCCEEEEEEEEEcCCCC
Confidence 589999999999863 44555566555999999999999999999999999999999998643
No 26
>PRK08202 purine nucleoside phosphorylase; Provisional
Probab=99.59 E-value=2e-14 Score=107.79 Aligned_cols=85 Identities=16% Similarity=0.215 Sum_probs=69.4
Q ss_pred ceeEEEe--eeCCccccChHHHHHHHhcCCcEeehhHHHHHHHHHHCCCCEEEEEeeecCCCC--Cch-hHHHHHHHHHH
Q 034258 2 VIEVCKL--STGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDG--DKP-TAEEFMQNLVA 76 (100)
Q Consensus 2 ~v~~G~i--~SgD~fi~~~~~~~~l~~~~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~~~--~~~-~f~~~~~~a~~ 76 (100)
++|.|++ .+||+|.+.++. +.+++.++++|+||+++++++|+++|+||++||.|||.+.+ +.+ +|++++..+.+
T Consensus 178 ~~~~G~y~~~~Gp~feT~aE~-~~~~~~Gad~VgMe~~~ea~lA~~~gi~~~~i~~Vsd~a~~~~~~~~~~~ev~~~~~~ 256 (272)
T PRK08202 178 PLQEGVYVGVSGPSYETPAEI-RMLRTLGADAVGMSTVPEVIVARHCGLKVLGISCITNLAAGISDEPLSHEEVLEVAER 256 (272)
T ss_pred ceeeEEEEEeeCCCcCCHHHH-HHHHHcCCcEEecChHHHHHHHHHCCCcEEEEEEEeccCcCCCCCCCCHHHHHHHHHH
Confidence 5789998 999999988775 45555599999999999999999999999999999999976 345 88888877766
Q ss_pred HHHHHHHHHHH
Q 034258 77 VTAALEQSVSQ 87 (100)
Q Consensus 77 ~s~~~~~~~~~ 87 (100)
++..+..-+.+
T Consensus 257 ~~~~~~~l~~~ 267 (272)
T PRK08202 257 AAPKFGRLVKA 267 (272)
T ss_pred HHHHHHHHHHH
Confidence 66555443333
No 27
>PRK08666 5'-methylthioadenosine phosphorylase; Validated
Probab=99.58 E-value=2.3e-14 Score=106.68 Aligned_cols=91 Identities=12% Similarity=0.141 Sum_probs=76.9
Q ss_pred ceeEEEe---eeCCccccChHHHHHHHhcCCcEeehhHHHHHHHHHHCCCCEEEEEeeecCCC--CCch-hHHHHHHHHH
Q 034258 2 VIEVCKL---STGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVD--GDKP-TAEEFMQNLV 75 (100)
Q Consensus 2 ~v~~G~i---~SgD~fi~~~~~~~~l~~~~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~~--~~~~-~f~~~~~~a~ 75 (100)
++|.|.+ .+||+|.+.++. +.+++.++++||||+++.+++|+++|+|+++|+.|||.++ ++.+ +|++++..+.
T Consensus 149 ~~~~ggvy~~~~Gp~fet~ae~-~~~~~~gad~V~Me~~~e~~~A~~~gi~~~~i~~vsn~a~~~~~~~~~~~e~~~~~~ 227 (261)
T PRK08666 149 TYHPGGTYVCTEGPRFETAAEI-RMFRILGGDLVGMTQVPEAVLARELEMCYATVAIVTNYAAGISPTKLTHSEVVELMA 227 (261)
T ss_pred ceEeccEEEEeeCCCcCCHHHH-HHHHHcCCCEEccchHHHHHHHHHCCCcEEEEEEEeeccccCCCCCCCHHHHHHHHH
Confidence 4676655 779999776654 4566669999999999999999999999999999999997 4455 9999999999
Q ss_pred HHHHHHHHHHHHHhhhhc
Q 034258 76 AVTAALEQSVSQVIDFIN 93 (100)
Q Consensus 76 ~~s~~~~~~~~~~~~~i~ 93 (100)
+++..+...+.+.+..+.
T Consensus 228 ~~~~~~~~ll~~~~~~~~ 245 (261)
T PRK08666 228 QNSENIKKLIMKAIELIP 245 (261)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 999988888888887764
No 28
>TIGR01719 euk_UDPppase uridine phosphorylase. This model represents a clade of mainly eucaryotic uridine phosphorylases. Genes from human and mouse have been characterized. This enzyme is a member of the PHP/UDP subfamily (pfam01048) and is closely related to the bacterial uridine (TIGR01718) and inosine (TIGR00107) phosphorylase equivalogs. In addition to the eukaryotes, a gene from Mycobacterium leprae is included in this equivalog and may have resulted from lateral gene transfer.
Probab=99.56 E-value=4.5e-14 Score=106.76 Aligned_cols=86 Identities=10% Similarity=0.075 Sum_probs=64.4
Q ss_pred ceeEEEeeeCCccccC-------------hHHHHHHHh---cCCcEeehhHHHHHHHHHHCCCCEEEEE-eeecCCCCCc
Q 034258 2 VIEVCKLSTGDSLDMS-------------SQDETSITA---NDATIKDMEGAAVAYVADLFKVPAIFVK-AVTDLVDGDK 64 (100)
Q Consensus 2 ~v~~G~i~SgD~fi~~-------------~~~~~~l~~---~~a~~vdME~aAva~va~~~~vp~~~Ir-~ISD~~~~~~ 64 (100)
++|.|+++|||.|+.+ .+..+.+.+ .+++++|||++|++++|+.+|+|+++|. +++|..+++.
T Consensus 179 ~~~~G~i~S~D~Fy~~q~r~~~~~~~~~~~~~~~~i~~~~~~gv~~vEMEsaal~~va~~~gv~a~~I~~~i~~r~~~~~ 258 (287)
T TIGR01719 179 TTVSGNTMCTDDFYEGQGRLDGAFCEYTEKDKMAYLRKLYALGVRNIEMESSMFAAMTSRAGFKAAVVCVTLLNRLEGDQ 258 (287)
T ss_pred CeEEEEEccCCcccCCCCcccccccccchhhhHHHHHHHHHcCCeEEehhHHHHHHHHHHcCCcEEEEEEeeeccccCCc
Confidence 5899999999999996 222344433 3899999999999999999999999999 7889876652
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHH
Q 034258 65 -PTAEEFMQNLVAVTAALEQSVSQ 87 (100)
Q Consensus 65 -~~f~~~~~~a~~~s~~~~~~~~~ 87 (100)
..-.+++..+.+.+.++++.+++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~i~ 282 (287)
T TIGR01719 259 ITITRDQLHEFEQRPQRLVSRYIK 282 (287)
T ss_pred cccchhHHHHHHHHHHHHHHHHHH
Confidence 21155566666666666555544
No 29
>TIGR01721 AMN-like AMP nucleosidase, putative. The sequences in the clade represented by this model are most closely related to the AMP nucleosidase found in TIGR01717. These sequences are found only in Chlamydia and Porphyromonas and differ sufficiently from the characterized AMP nucleosidase to put some doubt on assignment of this name.
Probab=99.54 E-value=1e-13 Score=104.07 Aligned_cols=61 Identities=13% Similarity=-0.030 Sum_probs=52.6
Q ss_pred ceeEEEeeeCCc-cccChH-HHHHHHhcCCcEeehhHHHHHHHHHHCCCCEEEEEeeecCCCC
Q 034258 2 VIEVCKLSTGDS-LDMSSQ-DETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDG 62 (100)
Q Consensus 2 ~v~~G~i~SgD~-fi~~~~-~~~~l~~~~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~~~ 62 (100)
+++.|+++|+|. |+...+ .++.|++.++++||||+||++++|+.+|+|+.+|+.|||.+..
T Consensus 151 ~~~~G~v~TtD~~F~e~~~~~~~~~~~~ga~aVEMEsAAL~ava~~~~vp~~~il~VSD~~~~ 213 (266)
T TIGR01721 151 DYHIGITHTTNIRFWEFNKKFRDKLYETKAQGVEMECATLFTAGYRRNLPXGALLLISDLPLR 213 (266)
T ss_pred CeEEEEEEcCCCcEeCCcHHHHHHHHHcCCEEEehhHHHHHHHHHHcCCCeEEEEEECCCCCC
Confidence 689999999996 776443 4456677799999999999999999999999999999999853
No 30
>TIGR01718 Uridine-psphlse uridine phosphorylase. Sequences from Clostridium, Streptomyces, Treponema, Halobacterium and Pyrobaculum were included above trusted on the basis of sequence homology and a PAM-based neighbor-joining tree. A clade including second sequences from Halobacterium and Vibrio was somewhat more distantly related and may represent a slightly different substrate specificity - these were placed below the noise cutoff. More distantly related is a clade of archaeal sequences which as related to the DeoD family of inosine phosphorylases (TIGR00107) as they are to these uridine phosphorylases. This clade includes a characterized protein from Sulfolobus solfataricus which has been mis-named as a methylthioadenosine phosphorylase, but which acts on inosine and guanosine - it is unclear whether uridine has been evaluated as a substrate.
Probab=99.41 E-value=1.7e-12 Score=95.88 Aligned_cols=61 Identities=15% Similarity=0.039 Sum_probs=50.7
Q ss_pred ceeEEEeeeCCccccChHH-----------H---HHHHhcCCcEeehhHHHHHHHHHHCCCCEEEEEeeecCCCC
Q 034258 2 VIEVCKLSTGDSLDMSSQD-----------E---TSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDG 62 (100)
Q Consensus 2 ~v~~G~i~SgD~fi~~~~~-----------~---~~l~~~~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~~~ 62 (100)
+++.|+++|+|.|+.+.+. + +.+.+.+++++|||+||++++|+.+|+|+.+|-++++....
T Consensus 143 ~~~~G~v~T~D~F~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vEME~aal~~va~~~gi~~~~v~~~~~~~~~ 217 (245)
T TIGR01718 143 RHHVGVVASSDTFYPGQERDTYSGRVVRHFKGSMEAWQAMGVLNYEMESATLFTLCSSQGLRAGMVAGVIVNRTQ 217 (245)
T ss_pred CeEEEEEEECCcCcCCCCccccccccchhHHHHHHHHHHcCceEehhhHHHHHHHHHHcCCcEEEEEEEEecccc
Confidence 5899999999999986532 1 23344499999999999999999999999999888887654
No 31
>TIGR01699 XAPA xanthosine phosphorylase. (TIGR01698, TIGR01700).
Probab=99.38 E-value=7.3e-12 Score=93.21 Aligned_cols=78 Identities=9% Similarity=0.115 Sum_probs=63.2
Q ss_pred ceeEEEeee--CCccccChHHHHHHHhcCCcEeehhHHHHHHHHHHCCCCEEEEEeeecCCCCCc--h-hHHHHHHHHHH
Q 034258 2 VIEVCKLST--GDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDK--P-TAEEFMQNLVA 76 (100)
Q Consensus 2 ~v~~G~i~S--gD~fi~~~~~~~~l~~~~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~~~~~--~-~f~~~~~~a~~ 76 (100)
+++.|++++ |++|.+.+|. +.+++.++++|+||+++.+++|+++|+|+++|+.|||.+.+.. + +.++.++.+.+
T Consensus 156 ~~~~Gvy~~~~GP~FeT~AE~-r~~~~~Gad~VgMs~vpEa~~A~~~g~~~~~i~~Vtn~a~g~~~~~lt~~ev~~~~~~ 234 (248)
T TIGR01699 156 PLTEGVFVSYPGPNFETAAEI-RMMQIIGGDVVGMSVVPEVISARHCDLKVVAVSAITNMAEGLSDVKLSHAQTLAAAEL 234 (248)
T ss_pred ceeeEEEEEeeCCCcCCHHHH-HHHHHcCCcEEccchhHHHHHHHHCCCcEEEEEEEeecCcCcCCCCCCHHHHHHHHHH
Confidence 578999999 9999988765 5555569999999999999999999999999999999997543 3 66666655544
Q ss_pred HHHH
Q 034258 77 VTAA 80 (100)
Q Consensus 77 ~s~~ 80 (100)
....
T Consensus 235 ~~~~ 238 (248)
T TIGR01699 235 SKQN 238 (248)
T ss_pred HHHH
Confidence 4444
No 32
>PRK11178 uridine phosphorylase; Provisional
Probab=99.34 E-value=1.6e-11 Score=91.10 Aligned_cols=59 Identities=15% Similarity=0.030 Sum_probs=48.5
Q ss_pred ceeEEEeeeCCccccChHH---------------HHHHHhcCCcEeehhHHHHHHHHHHCCCCEEEEEeeecCC
Q 034258 2 VIEVCKLSTGDSLDMSSQD---------------ETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLV 60 (100)
Q Consensus 2 ~v~~G~i~SgD~fi~~~~~---------------~~~l~~~~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~ 60 (100)
+++.|+++|||.|+.+.+. .+.+.+.+++++|||++|++++|+.+|+|+.+|-.+...-
T Consensus 148 ~~~~G~i~S~D~Fy~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~avEMEsAAla~va~~~gv~a~~v~~~~~~r 221 (251)
T PRK11178 148 TTHVGVTASSDTFYPGQERYDTYSGRVVRRFKGSMEEWQAMGVMNYEMESATLLTMCASQGLRAGMVAGVIVNR 221 (251)
T ss_pred CEEEEEEeecCcccCCCCccccccccchhhHHHHHHHHHHcCCeEEehhHHHHHHHHHHcCCcEEEEEEEEecc
Confidence 5899999999999976532 2334444999999999999999999999999997666654
No 33
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=99.33 E-value=4.2e-12 Score=93.15 Aligned_cols=78 Identities=17% Similarity=0.195 Sum_probs=65.3
Q ss_pred CceeEEEeeeCCccccChHH-HHHHHhcCCcEeehhHHHHHHHHHHCCCCEEEEEeeecCCC-CC------ch-hHHHHH
Q 034258 1 MVIEVCKLSTGDSLDMSSQD-ETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVD-GD------KP-TAEEFM 71 (100)
Q Consensus 1 ~~v~~G~i~SgD~fi~~~~~-~~~l~~~~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~~-~~------~~-~f~~~~ 71 (100)
+++|.|++.|.|.|+.+... .+.|.+.|.++||||++|+..+|..+|+..+.|-+|||..- ++ ++ .|++++
T Consensus 147 i~~hvgnv~ssD~FY~~~~~~~~~~~~~gvlaVeMEaaalY~~A~~~~~~Al~ilTVSD~l~t~E~~s~eeRq~tF~~M~ 226 (236)
T COG0813 147 IDTHVGNVFSSDLFYNPDTEMFDLMAKYGVLAVEMEAAALYAVAAEYGKKALTILTVSDHLVTGEETSAEERQNTFNDMI 226 (236)
T ss_pred CceeeeeeeeeecccCCCHHHHHHHHHhCCcEEEeeHHHHHHHHHHhCcceEEEEEeeccccCcccCCHHHHHHHHHHHH
Confidence 46899999999999987544 45667779999999999999999999999999999999883 22 34 888888
Q ss_pred HHHHHHH
Q 034258 72 QNLVAVT 78 (100)
Q Consensus 72 ~~a~~~s 78 (100)
+.|.+.+
T Consensus 227 ~iaLe~~ 233 (236)
T COG0813 227 EIALESA 233 (236)
T ss_pred HHHHHHH
Confidence 8777654
No 34
>PRK09136 5'-methylthioadenosine phosphorylase; Validated
Probab=99.29 E-value=5.9e-11 Score=88.14 Aligned_cols=83 Identities=16% Similarity=0.187 Sum_probs=67.0
Q ss_pred cee-EEEee--eCCccccChHHHHHHHhcCCcEeehhHHHHHHHHHHCCCCEEEEEeeecCCCCC---c-hhHHHHHHHH
Q 034258 2 VIE-VCKLS--TGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGD---K-PTAEEFMQNL 74 (100)
Q Consensus 2 ~v~-~G~i~--SgD~fi~~~~~~~~l~~~~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~~~~---~-~~f~~~~~~a 74 (100)
+++ .|+++ +|++| .++.+.+.+++.++++|+||+++.+++|+++|+|+++|+.|||.+.+. . .+.++.++.+
T Consensus 149 ~~~~~Gvy~~~~GP~f-eT~AE~r~lr~~Gad~VgMs~~pEa~~A~~~gi~~~~i~~Vtn~a~g~~~~~~~~~~ev~~~~ 227 (245)
T PRK09136 149 SLVDGGVYAATQGPRL-ETAAEIARLERDGCDLVGMTGMPEAALARELGLPYACLALVANWAAGRGDSAEITMAEIEAAL 227 (245)
T ss_pred cEEeccEEEEeeCCCc-CCHHHHHHHHHcCCCEEcCcHHHHHHHHHHcCCCEEEEEEEeecccCcCCCCCCCHHHHHHHH
Confidence 445 48887 99999 777778888878999999999999999999999999999999999543 2 2677777776
Q ss_pred HHHHHHHHHHH
Q 034258 75 VAVTAALEQSV 85 (100)
Q Consensus 75 ~~~s~~~~~~~ 85 (100)
.++..++...+
T Consensus 228 ~~~~~~~~~l~ 238 (245)
T PRK09136 228 DAAMGRVRELL 238 (245)
T ss_pred HHHHHHHHHHH
Confidence 66666554333
No 35
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=98.78 E-value=3.2e-08 Score=73.54 Aligned_cols=63 Identities=14% Similarity=0.138 Sum_probs=52.1
Q ss_pred ceeEEEeeeCCccc-----------cC-hHHHHHHHhcCCcEeehhHHHHHHHHHHCCCCEEEEEe-eecCCCCCc
Q 034258 2 VIEVCKLSTGDSLD-----------MS-SQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKA-VTDLVDGDK 64 (100)
Q Consensus 2 ~v~~G~i~SgD~fi-----------~~-~~~~~~l~~~~a~~vdME~aAva~va~~~~vp~~~Ir~-ISD~~~~~~ 64 (100)
++|.|++.|+|.|+ .. ++.-+.|+..+...+|||+++++.+|+..|+|..++-. |+|..+.+.
T Consensus 148 ~~~vG~v~S~D~FYgQ~r~~~~~~~~e~~~~~~~W~~~gv~~~EMEsAtlftl~~~~G~rag~V~~vi~n~~~~e~ 223 (248)
T COG2820 148 TVHVGVVASSDAFYGQERYYSGFVTPEFKESWEEWQDLGVLNIEMESATLFTLGSLRGLRAGAVLGVIANRTQGEQ 223 (248)
T ss_pred ceEEEEEeecccccccccccccccCcchHHHHHHHHHcCchhhHHHHHHHHHHHHHcCcccccEEEEEcccccccc
Confidence 68999999999999 32 23345666669999999999999999999999877766 999887654
No 36
>PRK08931 5'-methylthioadenosine phosphorylase; Provisional
Probab=96.93 E-value=0.022 Score=43.56 Aligned_cols=84 Identities=14% Similarity=0.072 Sum_probs=61.3
Q ss_pred eeeCCccccChHHHHHHHhcCCcEeehhHHHHHHHHHHCCCCEEEEEeeecCCCC---Cch-hHHHHHHHHHHHHHHHHH
Q 034258 8 LSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDG---DKP-TAEEFMQNLVAVTAALEQ 83 (100)
Q Consensus 8 i~SgD~fi~~~~~~~~l~~~~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~~~---~~~-~f~~~~~~a~~~s~~~~~ 83 (100)
...|.+|-+.+ +.+.++..|+++|-|=..-=+-+|++.|++++.|=.|+|++.. +.+ +.++.++.+.++...+..
T Consensus 160 ~~~GPrfET~A-Eir~~r~~GaDvVGMStvPEvilAre~Gl~~a~is~VTN~a~g~~~~~~~t~eeV~~~~~~~~~~~~~ 238 (289)
T PRK08931 160 CMEGPQFSTLA-ESKLYRSWGCDVIGMTNMPEAKLAREAEICYATVAMVTDYDCWHPDHDAVTVDAVIAVLLANADKARA 238 (289)
T ss_pred EeeCCCCCCHH-HHHHHHHcCCCEeccCccHHHHHHHHcCCceEEEEEEecccccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 56789996544 4566777799999999999999999999999999999999843 233 666666655555444444
Q ss_pred HHHHHhhhh
Q 034258 84 SVSQVIDFI 92 (100)
Q Consensus 84 ~~~~~~~~i 92 (100)
-+.+.+..+
T Consensus 239 ll~~~i~~l 247 (289)
T PRK08931 239 LVARLAPDL 247 (289)
T ss_pred HHHHHHHHh
Confidence 444444444
No 37
>PRK07432 5'-methylthioadenosine phosphorylase; Provisional
Probab=96.81 E-value=0.028 Score=42.99 Aligned_cols=91 Identities=14% Similarity=0.110 Sum_probs=68.2
Q ss_pred ee-EEE--eeeCCccccChHHHHHHHhcCCcEeehhHHHHHHHHHHCCCCEEEEEeeecCCCC---Cch-hHHHHHHHHH
Q 034258 3 IE-VCK--LSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDG---DKP-TAEEFMQNLV 75 (100)
Q Consensus 3 v~-~G~--i~SgD~fi~~~~~~~~l~~~~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~~~---~~~-~f~~~~~~a~ 75 (100)
+| .|+ ...|-+|-+. .+.+.++..|+++|-|=.+-=+-+|++.|++++.|=.|+|++.+ ..+ +.++.++.+.
T Consensus 155 ~~~~GvYv~~~GPrfET~-AEir~~r~~GaDvVGMS~vPEvilAre~Gl~~a~ls~VTN~a~g~~~~~~~s~eeV~~~~~ 233 (290)
T PRK07432 155 LHRGGTYVCMEGPAFSTK-AESNLYRSWGATVIGMTNLPEAKLAREAEIAYATLALVTDYDCWHPDHDSVTVEMVIGNLH 233 (290)
T ss_pred eeCCeEEEEeeCCCCCcH-HHHHHHHHcCCCEeccCchHHHHHHHhCCCcEEEEEEEeecccccCcCCCCCHHHHHHHHH
Confidence 45 466 4567799654 44566777799999999999999999999999999999999953 233 7777777766
Q ss_pred HHHHHHHHHHHHHhhhhcC
Q 034258 76 AVTAALEQSVSQVIDFING 94 (100)
Q Consensus 76 ~~s~~~~~~~~~~~~~i~~ 94 (100)
++..++...+.+.+..+..
T Consensus 234 ~~~~~~~~ll~~~i~~l~~ 252 (290)
T PRK07432 234 KNAVNAQKVIQETVRRLSA 252 (290)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 6666666556666655544
No 38
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=96.77 E-value=0.032 Score=41.52 Aligned_cols=79 Identities=16% Similarity=0.133 Sum_probs=59.9
Q ss_pred eeEEE--eeeCCccccChHHHHHHHhcCCcEeehhHHHHHHHHHHCCCCEEEEEeeecCCCCC--ch-hHHHHHHHHHHH
Q 034258 3 IEVCK--LSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGD--KP-TAEEFMQNLVAV 77 (100)
Q Consensus 3 v~~G~--i~SgD~fi~~~~~~~~l~~~~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~~~~--~~-~f~~~~~~a~~~ 77 (100)
++.|+ ...|-+|-+.+ +.+.+++.|+++|=|=+..=+-+|++.|++++.|=.|+|++.+. .+ +.++.++.+.+.
T Consensus 146 ~~~GvY~~~~GP~fET~A-Eir~~r~~GaD~VGMS~vpEvilAre~g~~~a~is~VtN~a~g~~~~~~th~ev~~~~~~~ 224 (237)
T TIGR01698 146 LAEGVYAWFPGPHYETPA-EIRMAGILGADLVGMSTVPETIAARFCGLEVLGVSLVTNLAAGITGTPLSHAEVKAAGAAA 224 (237)
T ss_pred ccCEEEEEecCCCcCCHH-HHHHHHHcCCCEeccCchHHHHHHHHCCCcEEEEEEEeccccCCCCCCCCHHHHHHHHHHH
Confidence 44565 56788996554 45667777999999999999999999999999999999999543 23 666666655555
Q ss_pred HHHHH
Q 034258 78 TAALE 82 (100)
Q Consensus 78 s~~~~ 82 (100)
...+.
T Consensus 225 ~~~~~ 229 (237)
T TIGR01698 225 GTRLA 229 (237)
T ss_pred HHHHH
Confidence 54443
No 39
>PRK08564 5'-methylthioadenosine phosphorylase II; Reviewed
Probab=96.58 E-value=0.045 Score=41.30 Aligned_cols=90 Identities=18% Similarity=0.079 Sum_probs=69.1
Q ss_pred ee-EEE--eeeCCccccChHHHHHHHhc-CCcEeehhHHHHHHHHHHCCCCEEEEEeeecCCCCCc-h-hHHHHHHHHHH
Q 034258 3 IE-VCK--LSTGDSLDMSSQDETSITAN-DATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGDK-P-TAEEFMQNLVA 76 (100)
Q Consensus 3 v~-~G~--i~SgD~fi~~~~~~~~l~~~-~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~~~~~-~-~f~~~~~~a~~ 76 (100)
+| .|+ ...|-+|-+ +.+.+.+++. |+++|-|=.+-=+-+|++.|++++.|=.|+|++.+.. + +.++.++.+.+
T Consensus 156 ~~~~GvY~~~~GP~fET-~AEir~~r~~~GaD~VGMS~vpEvilAre~g~~~~~is~VtN~a~g~~~~~t~~ev~~~~~~ 234 (267)
T PRK08564 156 THEKGTYICIEGPRFST-RAESRMWREVFKADIIGMTLVPEVNLACELGMCYATIAMVTDYDVWAEKPVTAEEVTRVMAE 234 (267)
T ss_pred eecceEEEEeeCCCcCC-HHHHHHHHHccCCCEeccCccHHHHHHHHcCCceEEEEEEeccccCCCCCCCHHHHHHHHHH
Confidence 44 365 467888965 4556788886 9999999999999999999999999999999996533 3 77777777766
Q ss_pred HHHHHHHHHHHHhhhhc
Q 034258 77 VTAALEQSVSQVIDFIN 93 (100)
Q Consensus 77 ~s~~~~~~~~~~~~~i~ 93 (100)
....+...+.+.++.+.
T Consensus 235 ~~~~~~~ll~~~i~~l~ 251 (267)
T PRK08564 235 NTEKAKKLLYEAIPRIP 251 (267)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 66666665666665554
No 40
>PRK07823 5'-methylthioadenosine phosphorylase; Validated
Probab=96.52 E-value=0.054 Score=40.90 Aligned_cols=88 Identities=17% Similarity=0.179 Sum_probs=63.5
Q ss_pred eEEE--eeeCCccccChHHHHHHHhcCCcEeehhHHHHHHHHHHCCCCEEEEEeeecCCCCC---ch-hHHHHHHHHHHH
Q 034258 4 EVCK--LSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDGD---KP-TAEEFMQNLVAV 77 (100)
Q Consensus 4 ~~G~--i~SgD~fi~~~~~~~~l~~~~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~~~~---~~-~f~~~~~~a~~~ 77 (100)
+.|+ ...|-+|-+. .+.+.++..|+++|-|=..-=+-+|++.|++++.|=.|+|++.+. .+ +.++.++.+.+.
T Consensus 149 ~~GvY~~~~GP~fET~-AEir~~r~~GaDvVGMS~vPEvilAre~gl~~~~is~VTN~a~g~~~~~~~~~eev~~~~~~~ 227 (264)
T PRK07823 149 DGGTMVVVQGPRFSTR-AESRWFAAQGWSLVNMTGYPEAVLARELELCYAAIALVTDLDAGVEAGEGVKAVDVFAEFGRN 227 (264)
T ss_pred CCeEEEEeeCCCCCCH-HHHHHHHHcCCCEeccCccHHHHHHHHCCCceEEEEEEeccccCcccCCCCCHHHHHHHHHHH
Confidence 3454 4678899654 455667777999999999999999999999999999999998543 23 666666665555
Q ss_pred HHHHHHHHHHHhhhh
Q 034258 78 TAALEQSVSQVIDFI 92 (100)
Q Consensus 78 s~~~~~~~~~~~~~i 92 (100)
+.++..-+.+.+..+
T Consensus 228 ~~~~~~ll~~~i~~~ 242 (264)
T PRK07823 228 IERLKRLVRDAIAAV 242 (264)
T ss_pred HHHHHHHHHHHHHhc
Confidence 555444444444444
No 41
>COG0005 Pnp Purine nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=94.50 E-value=0.32 Score=36.84 Aligned_cols=80 Identities=14% Similarity=0.183 Sum_probs=60.2
Q ss_pred eeeCCccccChHHHHHHHhcCCcEeehhHHHHHHHHHHCCCCEEEEEeeecCCCC-Cch-hHHHHHHHHHHHHHHHHHHH
Q 034258 8 LSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVDG-DKP-TAEEFMQNLVAVTAALEQSV 85 (100)
Q Consensus 8 i~SgD~fi~~~~~~~~l~~~~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~~~-~~~-~f~~~~~~a~~~s~~~~~~~ 85 (100)
..+|-+|-+ +.+.+.++..++++|-|=+.-=+-+|++.+.+++.|=.|+|++-+ +.+ +..+-++.+.+...++...+
T Consensus 177 ~~eGP~feT-~AEirm~r~~GaDvVGMS~vPEv~lARe~~l~ya~is~vTn~aag~~~~lt~eEV~~~~~~~~~~~~~l~ 255 (262)
T COG0005 177 CVEGPRFET-PAEIRMFRSLGADVVGMSTVPEVILARELGLCVAALSLVTNYAAGIGQPLTHEEVLEVAKENAEKIAKLL 255 (262)
T ss_pred EecCCCcCC-HHHHHHHHHhCCCcccCcCCcHHHHhHhhCCcEEEEEEeehhhccCCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 568899965 445667777799999999999999999999999999999999854 333 66666665555555554434
Q ss_pred HHH
Q 034258 86 SQV 88 (100)
Q Consensus 86 ~~~ 88 (100)
.+.
T Consensus 256 ~~~ 258 (262)
T COG0005 256 AAA 258 (262)
T ss_pred HHH
Confidence 333
No 42
>KOG3984 consensus Purine nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=91.25 E-value=0.86 Score=34.55 Aligned_cols=59 Identities=10% Similarity=0.067 Sum_probs=48.3
Q ss_pred ceeEEE--eeeCCccccChHHHHHHHhcCCcEeehhHHHHHHHHHHCCCCEEEEEeeecCCC
Q 034258 2 VIEVCK--LSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVD 61 (100)
Q Consensus 2 ~v~~G~--i~SgD~fi~~~~~~~~l~~~~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~~ 61 (100)
.+|.|. +++|..|-+-+|. +.++.-++++|-|-+.-=.-+|+..|++.+.+-.|++.+.
T Consensus 186 ~lheGvy~~vgGP~~eT~AE~-rmlr~mg~dAVGMStvpEVivArHcG~kVlafslITn~~~ 246 (286)
T KOG3984|consen 186 TLHEGVYACVGGPIFETRAES-RMLRTMGADAVGMSTVPEVIVARHCGLKVLAFSLITNKAV 246 (286)
T ss_pred hhhcceEEEecCCccccHHHH-HHHHHhCcccccccccchheeeccCCcEEEEEEEEecccc
Confidence 467776 6788899765543 4444459999999999999999999999999999999884
No 43
>PF06516 NUP: Purine nucleoside permease (NUP); InterPro: IPR009486 This family consists of several purine nucleoside permease from both bacteria and fungi [].; GO: 0055085 transmembrane transport
Probab=90.15 E-value=1.4 Score=34.19 Aligned_cols=90 Identities=9% Similarity=0.006 Sum_probs=60.4
Q ss_pred ceeEEEeeeCCccccChHHH---HHHHhc------CCcEeehhHHHHHHHHHHCCC-------CEEEEEeeecCCCCCc-
Q 034258 2 VIEVCKLSTGDSLDMSSQDE---TSITAN------DATIKDMEGAAVAYVADLFKV-------PAIFVKAVTDLVDGDK- 64 (100)
Q Consensus 2 ~v~~G~i~SgD~fi~~~~~~---~~l~~~------~a~~vdME~aAva~va~~~~v-------p~~~Ir~ISD~~~~~~- 64 (100)
.|..|-.+|||.|-.....- +.+-+. .-..-.||-.|.+++-.+... ..+++|++||+-.+..
T Consensus 190 ~V~~gDt~tsd~ywhG~~l~~~a~~~~~~~T~G~g~y~~T~~ED~atl~aL~r~~~~g~vD~~RvlvlRt~SNFdrpppg 269 (314)
T PF06516_consen 190 FVLKGDTLTSDTYWHGARLNEWAEDWVKLWTNGQGTYCTTAMEDNATLEALTRLAKAGRVDFDRVLVLRTASNFDRPPPG 269 (314)
T ss_pred EEEEccccccCCeeeCcHHHHHHHHHHHHHhCCcccEechHHHhHHHHHHHHHHHhcCCcCcceEEEEecccCCCCCccC
Confidence 36678899999998876432 222221 233479999999998666543 4899999999885321
Q ss_pred -----------h-hHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034258 65 -----------P-TAEEFMQNLVAVTAALEQSVSQVIDF 91 (100)
Q Consensus 65 -----------~-~f~~~~~~a~~~s~~~~~~~~~~~~~ 91 (100)
. .|.--++.+-.....++..+++.++.
T Consensus 270 ~ta~~~l~~~~~~g~~~Al~N~y~vG~~VV~~il~~Wd~ 308 (314)
T PF06516_consen 270 QTAAESLFAESQGGFAPALENAYRVGSPVVDDILANWDT 308 (314)
T ss_pred CCHHHHhcccCCCcHHHHHHHHHHHhHHHHHHHHhchHh
Confidence 1 44555666666677777777776653
No 44
>KOG3985 consensus Methylthioadenosine phosphorylase MTAP [Nucleotide transport and metabolism]
Probab=77.37 E-value=13 Score=28.16 Aligned_cols=54 Identities=15% Similarity=0.136 Sum_probs=43.5
Q ss_pred EEeeeCCccccChHHHHHHHhcCCcEeehhHHHHHHHHHHCCCCEEEEEeeecCC
Q 034258 6 CKLSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDLV 60 (100)
Q Consensus 6 G~i~SgD~fi~~~~~~~~l~~~~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~ 60 (100)
+.+.-|.+|-+..|. ...+..|++.+.|-...=+..|++.|+|...|-..+|+-
T Consensus 169 vVciEGPrFStRAES-~mfR~wGa~vINMt~iPE~~LAkEagi~Y~~iamaTDYD 222 (283)
T KOG3985|consen 169 VVCIEGPRFSTRAES-KMFRSWGASVINMTVIPEAKLAKEAGIPYQMIAMATDYD 222 (283)
T ss_pred EEEeeCCccchHHHH-HHHHHhccceeeeeechHHHHHHhcCcchhhheeccchh
Confidence 445568899765443 333444999999999999999999999999999999976
No 45
>KOG3728 consensus Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=69.29 E-value=9.6 Score=29.07 Aligned_cols=37 Identities=24% Similarity=0.262 Sum_probs=28.0
Q ss_pred CCcEeehhHHHHHHHHHHCCCCEEEE-EeeecCCCCCc
Q 034258 28 DATIKDMEGAAVAYVADLFKVPAIFV-KAVTDLVDGDK 64 (100)
Q Consensus 28 ~a~~vdME~aAva~va~~~~vp~~~I-r~ISD~~~~~~ 64 (100)
|.-=+|||+.-+|.++++.|+...++ -++-|..+++.
T Consensus 242 GVrNIEMEss~FAs~t~~~G~kaavVCVtLlnRl~GDQ 279 (308)
T KOG3728|consen 242 GVRNIEMESSMFASVTQKAGVKAAVVCVTLLNRLKGDQ 279 (308)
T ss_pred CceeeehhHHHHHHHHHhcCcchhhhHHHHHhhccCCc
Confidence 77789999999999999999986554 33445555543
No 46
>PRK08227 autoinducer 2 aldolase; Validated
Probab=66.06 E-value=9.3 Score=28.90 Aligned_cols=48 Identities=15% Similarity=0.188 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHCCCCEEEEEeeecCCCCCch-hHHHHHHHHHHHHHHHHHHHHH
Q 034258 35 EGAAVAYVADLFKVPAIFVKAVTDLVDGDKP-TAEEFMQNLVAVTAALEQSVSQ 87 (100)
Q Consensus 35 E~aAva~va~~~~vp~~~Ir~ISD~~~~~~~-~f~~~~~~a~~~s~~~~~~~~~ 87 (100)
+-+.++.-|+++|+|.+. +. ..++... +.+ ++..+++.+++|.-+++|
T Consensus 128 ~l~~v~~ea~~~G~Plla---~~-prG~~~~~~~~-~ia~aaRiaaELGADiVK 176 (264)
T PRK08227 128 NIIQLVDAGLRYGMPVMA---VT-AVGKDMVRDAR-YFSLATRIAAEMGAQIIK 176 (264)
T ss_pred HHHHHHHHHHHhCCcEEE---Ee-cCCCCcCchHH-HHHHHHHHHHHHcCCEEe
Confidence 567788899999999887 33 2222222 333 888999999998755554
No 47
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=60.66 E-value=8.5 Score=28.46 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=19.1
Q ss_pred CCcEeehhHHHHHHHHHHCCCCEEEE
Q 034258 28 DATIKDMEGAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 28 ~a~~vdME~aAva~va~~~~vp~~~I 53 (100)
|...--.=++.+|.+|+.+++|++++
T Consensus 191 G~v~nk~Gt~~~a~~Ak~~~vPv~v~ 216 (282)
T PF01008_consen 191 GGVVNKVGTLQLALAAKEFNVPVYVL 216 (282)
T ss_dssp S-EEEETTHHHHHHHHHHTT-EEEEE
T ss_pred CCEeehhhHHHHHHHHHhhCCCEEEE
Confidence 34444555689999999999999986
No 48
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=59.65 E-value=56 Score=24.21 Aligned_cols=44 Identities=25% Similarity=0.209 Sum_probs=32.3
Q ss_pred HHHHHHHHHHCCCCEEEEEeeecCCCCCchhHHHHHHHHHHHHH
Q 034258 36 GAAVAYVADLFKVPAIFVKAVTDLVDGDKPTAEEFMQNLVAVTA 79 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~Ir~ISD~~~~~~~~f~~~~~~a~~~s~ 79 (100)
-.|++..|.+.|++=+.|=.++|.-|....+...|++...+...
T Consensus 48 l~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~~~yl~~l~~~l~ 91 (223)
T PF06415_consen 48 LFALIKLAKKQGVKKVYVHAFTDGRDTPPKSALKYLEELEEKLA 91 (223)
T ss_dssp HHHHHHHHHHTT-SEEEEEEEE-SSSS-TTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEEecCCCCCCcchHHHHHHHHHHHHH
Confidence 46899999999999999999999998776677777765444333
No 49
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=57.79 E-value=12 Score=28.22 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=22.9
Q ss_pred CcEeehhHHHHHHHHHHCCCCEEEEEeeecCCC
Q 034258 29 ATIKDMEGAAVAYVADLFKVPAIFVKAVTDLVD 61 (100)
Q Consensus 29 a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~~ 61 (100)
...-..=++.+|..|+.+++||+++ +.++...
T Consensus 167 ~v~nkvGT~~~Al~A~~~~vPv~V~-~~s~Kf~ 198 (253)
T PRK06372 167 GLIHKNGTFPLALCARYLKKPFYSL-TISMKIE 198 (253)
T ss_pred CEeehhhHHHHHHHHHHcCCCEEEE-eeccccC
Confidence 3334455688999999999999984 4455444
No 50
>PRK09932 glycerate kinase II; Provisional
Probab=53.34 E-value=76 Score=25.37 Aligned_cols=52 Identities=23% Similarity=0.190 Sum_probs=31.6
Q ss_pred HHHHHHHHHCCCCEEEEEee-ecCCC-------------CCch-hHHHHHHHHHHHHHHHHHHHHHH
Q 034258 37 AAVAYVADLFKVPAIFVKAV-TDLVD-------------GDKP-TAEEFMQNLVAVTAALEQSVSQV 88 (100)
Q Consensus 37 aAva~va~~~~vp~~~Ir~I-SD~~~-------------~~~~-~f~~~~~~a~~~s~~~~~~~~~~ 88 (100)
.+|++.|+++++|+++|=+- .+..+ .+.+ +.++-+..+.+...+..+.+.+.
T Consensus 306 ~~Va~~A~~~~~Pvi~i~G~~~~~~~~~~~~g~~~~~~i~~~~~~l~~a~~~~~~~l~~~~~~~~~~ 372 (381)
T PRK09932 306 LGVASVAKQFNVPVIGIAGVLGDGVEVVHQYGIDAVFSILPRLAPLAEVLASGETNLFNSARNIACA 372 (381)
T ss_pred HHHHHHHHHcCCCEEEEecccCCChHHHHhcCceEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999998663 33321 0123 55666655555444444444443
No 51
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=52.82 E-value=29 Score=25.42 Aligned_cols=38 Identities=21% Similarity=0.167 Sum_probs=29.4
Q ss_pred HHHHhc--CCcEeehhHHHHHHHHHHCCCCEEEEEeeecCC
Q 034258 22 TSITAN--DATIKDMEGAAVAYVADLFKVPAIFVKAVTDLV 60 (100)
Q Consensus 22 ~~l~~~--~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~~ 60 (100)
+.+++. +....|.+-.+ ...|+..|+|+++|--..+..
T Consensus 88 ~~l~~~~pDlVIsD~~~~~-~~aa~~~giP~i~i~~~~~~~ 127 (318)
T PF13528_consen 88 RWLREFRPDLVISDFYPLA-ALAARRAGIPVIVISNQYWFL 127 (318)
T ss_pred HHHHhcCCCEEEEcChHHH-HHHHHhcCCCEEEEEehHHcc
Confidence 445554 78889998886 488899999999877766654
No 52
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=52.19 E-value=16 Score=28.05 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=19.8
Q ss_pred CcEeehhHHHHHHHHHHCCCCEEEE
Q 034258 29 ATIKDMEGAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 29 a~~vdME~aAva~va~~~~vp~~~I 53 (100)
...--.=++.+|.+|+.+++||.++
T Consensus 204 ~v~nkiGT~~~A~~Ak~~~vPv~V~ 228 (310)
T PRK08535 204 AVINKIGTSQIALAAHEARVPFMVA 228 (310)
T ss_pred CEEeHHhHHHHHHHHHHhCCCEEEe
Confidence 3334455788999999999999987
No 53
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=48.62 E-value=75 Score=25.32 Aligned_cols=51 Identities=22% Similarity=0.227 Sum_probs=31.8
Q ss_pred HHHHHHHHHCCCCEEEEEeeecCC-C-------------CCch-hHHHHHHHHHHHHHHHHHHHHH
Q 034258 37 AAVAYVADLFKVPAIFVKAVTDLV-D-------------GDKP-TAEEFMQNLVAVTAALEQSVSQ 87 (100)
Q Consensus 37 aAva~va~~~~vp~~~Ir~ISD~~-~-------------~~~~-~f~~~~~~a~~~s~~~~~~~~~ 87 (100)
.+|++.|.++++|+++|=+-.+.. . .+.+ +.++-+..+.+...+..+.+.+
T Consensus 305 ~~Va~~A~~~~vPviai~G~v~~~~~~~~~~g~~a~~~i~~~~~~l~~a~~~~~~~l~~~~~~~~~ 370 (375)
T TIGR00045 305 VGVAKRAKKYGVPVIAIAGSLGDGVDVLPQHGIDAAFSILPSPMPLEDALQNASTNLERTAENIAR 370 (375)
T ss_pred HHHHHHHHHhCCeEEEEecccCCChHHHHhcCccEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999986654321 1 0123 6666666555554444444443
No 54
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=48.33 E-value=20 Score=28.09 Aligned_cols=28 Identities=11% Similarity=0.076 Sum_probs=22.4
Q ss_pred CCcEeehhHHHHHHHHHHCCCCEEEEEe
Q 034258 28 DATIKDMEGAAVAYVADLFKVPAIFVKA 55 (100)
Q Consensus 28 ~a~~vdME~aAva~va~~~~vp~~~Ir~ 55 (100)
|..+-..=++.+|..|+.+|+||.++=-
T Consensus 230 G~v~NKiGT~~lAl~Ak~~~VPfyV~a~ 257 (329)
T PRK06371 230 GDFANKIGTYEKAVLAKVNGIPFYVAAP 257 (329)
T ss_pred CCEeehhhHHHHHHHHHHcCCCEEEecc
Confidence 4455556678999999999999999754
No 55
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=47.36 E-value=21 Score=27.13 Aligned_cols=26 Identities=12% Similarity=0.022 Sum_probs=20.7
Q ss_pred CCcEeehhHHHHHHHHHHCCCCEEEE
Q 034258 28 DATIKDMEGAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 28 ~a~~vdME~aAva~va~~~~vp~~~I 53 (100)
|..+-.+=++.+|..|+.+|+||.++
T Consensus 192 G~v~NKiGT~~lA~~Ak~~~vPfyV~ 217 (275)
T PRK08335 192 GYVVNKAGTYLLALACHDNGVPFYVA 217 (275)
T ss_pred CCEeehhhHHHHHHHHHHcCCCEEEE
Confidence 34444556788999999999999986
No 56
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=46.72 E-value=22 Score=27.17 Aligned_cols=26 Identities=23% Similarity=0.301 Sum_probs=20.2
Q ss_pred CCcEeehhHHHHHHHHHHCCCCEEEE
Q 034258 28 DATIKDMEGAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 28 ~a~~vdME~aAva~va~~~~vp~~~I 53 (100)
|...--.=++.+|.+|+.+++||.++
T Consensus 198 G~v~nkiGT~~lA~~Ak~~~vPv~V~ 223 (301)
T TIGR00511 198 GALINKIGTSQLALAAREARVPFMVA 223 (301)
T ss_pred CCEEEHHhHHHHHHHHHHhCCCEEEE
Confidence 33444455788999999999999987
No 57
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=46.70 E-value=14 Score=29.67 Aligned_cols=45 Identities=13% Similarity=0.217 Sum_probs=26.9
Q ss_pred EeeeCCccccChHHHHHHHhc-C---CcEe------------ehhHHHHHHHHHHCCCCEEE
Q 034258 7 KLSTGDSLDMSSQDETSITAN-D---ATIK------------DMEGAAVAYVADLFKVPAIF 52 (100)
Q Consensus 7 ~i~SgD~fi~~~~~~~~l~~~-~---a~~v------------dME~aAva~va~~~~vp~~~ 52 (100)
+..-||..+.+.+..+...+. + ++|+ | +.-+|+.+|++++||+++
T Consensus 130 ~~~~~d~l~td~~~ie~~i~~~G~~~iLcvltttscfapr~~D-~i~~IakiC~~~~IPhlv 190 (389)
T PF05889_consen 130 NVLEGDELITDLEAIEAKIEELGADNILCVLTTTSCFAPRLPD-DIEEIAKICKEYDIPHLV 190 (389)
T ss_dssp EEEETTEEEEHHHHHHHHHHHHCGGGEEEEEEESSTTTTB-----HHHHHHHHHHHT--EEE
T ss_pred ccCCCCeeeccHHHHHHHHHHhCCCCeEEEEEecCccCCCCCc-cHHHHHHHHHHcCCceEE
Confidence 345677777766554433332 2 3332 3 577999999999999987
No 58
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=45.41 E-value=22 Score=28.14 Aligned_cols=26 Identities=12% Similarity=0.131 Sum_probs=20.8
Q ss_pred CCcEeehhHHHHHHHHHHCCCCEEEE
Q 034258 28 DATIKDMEGAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 28 ~a~~vdME~aAva~va~~~~vp~~~I 53 (100)
|..+-..=++.+|..|+.+|+||.++
T Consensus 261 G~v~NKiGTy~lA~~Ak~~~vPfyV~ 286 (363)
T PRK05772 261 GHVFNKIGTFKEAVIAHELGIPFYAL 286 (363)
T ss_pred CCEeehhhhHHHHHHHHHhCCCEEEE
Confidence 34445566788999999999999986
No 59
>KOG1468 consensus Predicted translation initiation factor related to eIF-2B alpha/beta/delta subunits (CIG2/IDI2) [Translation, ribosomal structure and biogenesis]
Probab=44.90 E-value=35 Score=26.70 Aligned_cols=39 Identities=13% Similarity=0.153 Sum_probs=29.8
Q ss_pred EEeeeCCccccChHHHHHHHhcCCcEeehhHHHHHHHHHHCCCCEEEEE
Q 034258 6 CKLSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVK 54 (100)
Q Consensus 6 G~i~SgD~fi~~~~~~~~l~~~~a~~vdME~aAva~va~~~~vp~~~Ir 54 (100)
+.++..|++..+-+..+++- ++-+|-+|+.+|+||.+.-
T Consensus 236 avvvGADrVarNGDTANKIG----------Ty~LAv~aKhhgipFyvaa 274 (354)
T KOG1468|consen 236 AVVVGADRVARNGDTANKIG----------TYQLAVLAKHHGIPFYVAA 274 (354)
T ss_pred EEEEcccceeccCcchhhhh----------hhHHHHHHHhcCCceEEec
Confidence 56777788888777665543 4678899999999998763
No 60
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=44.42 E-value=24 Score=27.67 Aligned_cols=24 Identities=8% Similarity=0.156 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHCCCCEEEEEeee
Q 034258 34 MEGAAVAYVADLFKVPAIFVKAVT 57 (100)
Q Consensus 34 ME~aAva~va~~~~vp~~~Ir~IS 57 (100)
.=++.+|..|+.+|+||.++=-.|
T Consensus 246 iGT~~lA~~Ak~~~vPfyV~ap~s 269 (339)
T PRK06036 246 IGTYTHSVLAKEHEIPFYVAAPLS 269 (339)
T ss_pred hhHHHHHHHHHHhCCCEEEEeecC
Confidence 335788999999999999975444
No 61
>PRK10342 glycerate kinase I; Provisional
Probab=44.16 E-value=1.1e+02 Score=24.48 Aligned_cols=52 Identities=15% Similarity=0.096 Sum_probs=31.9
Q ss_pred HHHHHHHHHCCCCEEEEEeeecCC-C-------------CCch-hHHHHHHHHHHHHHHHHHHHHHH
Q 034258 37 AAVAYVADLFKVPAIFVKAVTDLV-D-------------GDKP-TAEEFMQNLVAVTAALEQSVSQV 88 (100)
Q Consensus 37 aAva~va~~~~vp~~~Ir~ISD~~-~-------------~~~~-~f~~~~~~a~~~s~~~~~~~~~~ 88 (100)
..|++.|+++++|+++|=+-.+.- . .+.+ +..+-+..+.+...+..+.+.+.
T Consensus 306 ~gVa~~A~~~~vPviai~G~~~~~~~~~~~~g~~av~~i~~~~~~l~~a~~~~~~~l~~~~~~i~r~ 372 (381)
T PRK10342 306 IGVANVAKKYHKPVIGIAGSLTDDVGVVHQHGIDAVFSVLTSIGTLDEAFRGAYDNICRASRNIAAT 372 (381)
T ss_pred HHHHHHHHHhCCCEEEEecccCCChHHHHhcCceEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999997643211 1 0123 66666665555544444444443
No 62
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=44.12 E-value=25 Score=27.00 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=21.1
Q ss_pred CCcEeehhHHHHHHHHHHCCCCEEEE
Q 034258 28 DATIKDMEGAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 28 ~a~~vdME~aAva~va~~~~vp~~~I 53 (100)
|...--+=++-+|.+|+.+++||+++
T Consensus 212 G~v~nk~GT~~lA~~Ak~~~vPv~V~ 237 (303)
T TIGR00524 212 GDVANKIGTYQLAVLAKEFRIPFFVA 237 (303)
T ss_pred CCEeEhhhHHHHHHHHHHhCCCEEEe
Confidence 44455566788999999999999987
No 63
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=43.05 E-value=26 Score=27.77 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=20.5
Q ss_pred EeehhHHHHHHHHHHCCCCEEEEEeee
Q 034258 31 IKDMEGAAVAYVADLFKVPAIFVKAVT 57 (100)
Q Consensus 31 ~vdME~aAva~va~~~~vp~~~Ir~IS 57 (100)
+-..=++.+|..|+.+|+||.++=.+|
T Consensus 256 ~NKiGTy~lA~~Ak~~~vPfyV~Ap~~ 282 (356)
T PRK08334 256 ANKIGTYTLAVLAKEHGIPFFTVAPLS 282 (356)
T ss_pred eehhhHHHHHHHHHHhCCCEEEEcccC
Confidence 334446888999999999999975433
No 64
>PF02595 Gly_kinase: Glycerate kinase family; InterPro: IPR004381 This family includes glycerate kinase 2 (2.7.1.31 from EC), which catalyses the phosphorylation of (R)-glycerate to 3-phospho-(R)-glycerate in the presence of ATP. These proteins consist of two different alpha/beta domains: domain 1 has a flavodoxin-like fold, while domain 2 has a restriction enzyme-like fold (domain 2 is inserted into domain 1).; GO: 0008887 glycerate kinase activity, 0031388 organic acid phosphorylation; PDB: 3CWC_B 1TO6_A.
Probab=42.78 E-value=23 Score=28.13 Aligned_cols=23 Identities=39% Similarity=0.442 Sum_probs=16.9
Q ss_pred HHHHHHHHHCCCCEEEEEeeecC
Q 034258 37 AAVAYVADLFKVPAIFVKAVTDL 59 (100)
Q Consensus 37 aAva~va~~~~vp~~~Ir~ISD~ 59 (100)
..|++.|+++++|+++|=+-.+.
T Consensus 306 ~~Va~~A~~~~vPviav~G~~~~ 328 (377)
T PF02595_consen 306 GGVARLAKKHGVPVIAVAGSVDL 328 (377)
T ss_dssp HHHHCCHCCTT--EEEEECEC-T
T ss_pred HHHHHHHHHcCCcEEEEeCCCCC
Confidence 67899999999999999877553
No 65
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=42.67 E-value=27 Score=27.42 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=23.0
Q ss_pred CCcEeehhHHHHHHHHHHCCCCEEEEEeee
Q 034258 28 DATIKDMEGAAVAYVADLFKVPAIFVKAVT 57 (100)
Q Consensus 28 ~a~~vdME~aAva~va~~~~vp~~~Ir~IS 57 (100)
|..+-..=++.+|..|+.+++||.++=-.+
T Consensus 240 G~v~NkiGT~~lAl~Ak~~~vPfyV~a~~~ 269 (344)
T PRK05720 240 GDVANKIGTYQLAIAAKYHGVPFYVAAPSS 269 (344)
T ss_pred CCEeehhhHHHHHHHHHHhCCCEEEecccc
Confidence 444555667899999999999999865544
No 66
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=42.54 E-value=22 Score=28.80 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=16.9
Q ss_pred cEeehhHHHHHHHHHHCCCCEEEE
Q 034258 30 TIKDMEGAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 30 ~~vdME~aAva~va~~~~vp~~~I 53 (100)
.+.|-| +|+.+|+++|+|+++=
T Consensus 162 ~v~Die--~ia~iAh~~gvpliVD 183 (426)
T COG2873 162 DVLDIE--AIAEIAHRHGVPLIVD 183 (426)
T ss_pred cccCHH--HHHHHHHHcCCcEEEe
Confidence 344445 6999999999998763
No 67
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=42.23 E-value=27 Score=27.25 Aligned_cols=29 Identities=17% Similarity=0.161 Sum_probs=22.0
Q ss_pred CCcEeehhHHHHHHHHHHCCCCEEEEEee
Q 034258 28 DATIKDMEGAAVAYVADLFKVPAIFVKAV 56 (100)
Q Consensus 28 ~a~~vdME~aAva~va~~~~vp~~~Ir~I 56 (100)
|...-..=++.+|..|+.+++||.++=-.
T Consensus 240 G~v~nkiGT~~lA~~Ak~~~vPfyV~a~~ 268 (331)
T TIGR00512 240 GDTANKIGTYQLAVLAKHHGVPFYVAAPT 268 (331)
T ss_pred CCEeehhhHHHHHHHHHHhCCCEEEeccc
Confidence 34444556789999999999999987443
No 68
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=42.02 E-value=44 Score=23.90 Aligned_cols=28 Identities=29% Similarity=0.185 Sum_probs=22.8
Q ss_pred HhcCCcEeeh--------------hHHHHHHHHHHCCCCEEE
Q 034258 25 TANDATIKDM--------------EGAAVAYVADLFKVPAIF 52 (100)
Q Consensus 25 ~~~~a~~vdM--------------E~aAva~va~~~~vp~~~ 52 (100)
.+.|++.++| +...+...|+.+|+|+++
T Consensus 86 ~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~ii 127 (235)
T cd00958 86 VRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIA 127 (235)
T ss_pred HHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 3348888876 788889999999999866
No 69
>PRK11761 cysM cysteine synthase B; Provisional
Probab=41.34 E-value=31 Score=25.98 Aligned_cols=19 Identities=21% Similarity=0.259 Sum_probs=16.7
Q ss_pred HHHHHHHHHHCCCCEEEEE
Q 034258 36 GAAVAYVADLFKVPAIFVK 54 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~Ir 54 (100)
+.|+|.+|+.+|+|+.++=
T Consensus 75 g~alA~~a~~~G~~~~i~~ 93 (296)
T PRK11761 75 GIALAMIAAIKGYRMKLIM 93 (296)
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 6789999999999988863
No 70
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=40.80 E-value=30 Score=25.66 Aligned_cols=19 Identities=32% Similarity=0.228 Sum_probs=16.2
Q ss_pred HHHHHHHHHHCCCCEEEEE
Q 034258 36 GAAVAYVADLFKVPAIFVK 54 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~Ir 54 (100)
+.|+|.+|+.+|+|+.++=
T Consensus 65 g~alA~~a~~~G~~~~i~v 83 (291)
T cd01561 65 GIGLAMVAAAKGYRFIIVM 83 (291)
T ss_pred HHHHHHHHHHcCCeEEEEE
Confidence 5689999999999987753
No 71
>PRK06381 threonine synthase; Validated
Probab=40.29 E-value=32 Score=25.86 Aligned_cols=18 Identities=39% Similarity=0.766 Sum_probs=15.9
Q ss_pred HHHHHHHHHHCCCCEEEE
Q 034258 36 GAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~I 53 (100)
+.|+|.+|+.+|+|+.++
T Consensus 75 g~alA~~aa~~G~~~~iv 92 (319)
T PRK06381 75 GASIAYFARLYGLKAVIF 92 (319)
T ss_pred HHHHHHHHHHcCCcEEEE
Confidence 578999999999998774
No 72
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=40.23 E-value=31 Score=25.83 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=16.1
Q ss_pred HHHHHHHHHHCCCCEEEE
Q 034258 36 GAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~I 53 (100)
+.|+|.+|+.+|+|+.++
T Consensus 71 g~alA~~a~~~G~~~~i~ 88 (290)
T TIGR01138 71 GIALAMIAALKGYRMKLL 88 (290)
T ss_pred HHHHHHHHHHcCCeEEEE
Confidence 679999999999998775
No 73
>cd01917 ACS_2 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=40.07 E-value=66 Score=24.85 Aligned_cols=46 Identities=22% Similarity=0.186 Sum_probs=30.7
Q ss_pred EeehhHHHHHHHHHHCCCCEEEEEeeec---CCCC--CchhHHHHHHHHHH
Q 034258 31 IKDMEGAAVAYVADLFKVPAIFVKAVTD---LVDG--DKPTAEEFMQNLVA 76 (100)
Q Consensus 31 ~vdME~aAva~va~~~~vp~~~Ir~ISD---~~~~--~~~~f~~~~~~a~~ 76 (100)
..|+|.+|++.-|...|+|.+.=..+-- ..+. ..++++++++.+.+
T Consensus 231 ~~s~~~~A~aaGai~~GfPVI~d~~~pei~~~P~~~~~~~~~d~iv~~alE 281 (287)
T cd01917 231 ELDMVKTAAAAGAIFTGFPVITDQELPEDKQIPDWFFSSSDYDKIVQNALE 281 (287)
T ss_pred ccCHHHHHHHhhHHHcCCCEEeCCCCcccccCccceecCCCHHHHHHHHHH
Confidence 5899999999999999999765332221 0101 11388888876654
No 74
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=39.87 E-value=90 Score=24.76 Aligned_cols=49 Identities=14% Similarity=0.211 Sum_probs=32.5
Q ss_pred eEEEeeeCCccccChHH--HH----HHHhcCCcEe-----------ehhHHHHHH-HHHHCCCCEEE
Q 034258 4 EVCKLSTGDSLDMSSQD--ET----SITANDATIK-----------DMEGAAVAY-VADLFKVPAIF 52 (100)
Q Consensus 4 ~~G~i~SgD~fi~~~~~--~~----~l~~~~a~~v-----------dME~aAva~-va~~~~vp~~~ 52 (100)
..+++.+||.++.+..+ .+ .+++.+++.+ -|=++.++. |..+.+||.+.
T Consensus 50 Iv~TiiCGDnyf~en~eea~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vt 116 (349)
T PF07355_consen 50 IVATIICGDNYFNENKEEALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVT 116 (349)
T ss_pred EEEEEEECcchhhhCHHHHHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEE
Confidence 36899999999875432 22 3333366654 355666666 67889999774
No 75
>PF07881 Fucose_iso_N1: L-fucose isomerase, first N-terminal domain; InterPro: IPR012888 Proteins containing this domain are similar to L-fucose isomerase expressed by Escherichia coli (P11552 from SWISSPROT, 5.3.1.3 from EC). This enzyme corresponds to glucose-6-phosphate isomerase in glycolysis, and converts an aldo-hexose to a ketose to prepare it for aldol cleavage. The enzyme is a hexamer, with each subunit being wedge-shaped and composed of three domains. Both domains 1 and 2 contain central parallel beta-sheets with surrounding alpha helices. Domain 1 demonstrates the beta-alpha-beta-alpha- beta Rossman fold. The active centre is shared between pairs of subunits related along the molecular three-fold axis, with domains 2 and 3 from one subunit providing most of the substrate-contacting residues, and domain 1 from the adjacent subunit contributing some other residues []. ; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 3A9R_A 3A9T_C 3A9S_C 1FUI_E.
Probab=39.36 E-value=83 Score=22.52 Aligned_cols=40 Identities=23% Similarity=0.199 Sum_probs=23.2
Q ss_pred CCCEEEEEeeecCCCCCch-hHHHHHHHHHHHHHHHHHHHH
Q 034258 47 KVPAIFVKAVTDLVDGDKP-TAEEFMQNLVAVTAALEQSVS 86 (100)
Q Consensus 47 ~vp~~~Ir~ISD~~~~~~~-~f~~~~~~a~~~s~~~~~~~~ 86 (100)
+.|-+.||.+||.-...-. +..++....++..+++.+.-+
T Consensus 2 ~~pkIGIrp~iDGR~~gVresLe~~tm~ma~~~a~ll~~~l 42 (171)
T PF07881_consen 2 NKPKIGIRPTIDGRRGGVRESLEEQTMNMAKAVAELLEENL 42 (171)
T ss_dssp B--EEEEEEB----TTTHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CCCeEEEEEeecCCchhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4688999999999877543 666666666667777655443
No 76
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=39.09 E-value=1.5e+02 Score=21.46 Aligned_cols=70 Identities=11% Similarity=0.099 Sum_probs=39.1
Q ss_pred eeeCCccccChHHHH----HHHhcCCcEeehhHH---HHHHHHHHCCCCEEEEEeeecCCCCCchhHHHHHHHHHHHH
Q 034258 8 LSTGDSLDMSSQDET----SITANDATIKDMEGA---AVAYVADLFKVPAIFVKAVTDLVDGDKPTAEEFMQNLVAVT 78 (100)
Q Consensus 8 i~SgD~fi~~~~~~~----~l~~~~a~~vdME~a---Ava~va~~~~vp~~~Ir~ISD~~~~~~~~f~~~~~~a~~~s 78 (100)
-..|..|..+.+..+ .+++++-..+|.=+. ...++|.+.|+|+......-|...+ ....+..+..+.+.|
T Consensus 95 NhmGS~~T~~~~~m~~vl~~l~~~gl~FvDS~T~~~s~a~~~A~~~gvp~~~rdvfLD~~~~-~~~I~~ql~~~~~~A 171 (213)
T PF04748_consen 95 NHMGSRFTSDREAMRWVLEVLKERGLFFVDSRTTPRSVAPQVAKELGVPAARRDVFLDNDQD-EAAIRRQLDQAARIA 171 (213)
T ss_dssp EEE-CCHHC-HHHHHHHHHHHHHTT-EEEE-S--TT-SHHHHHHHCT--EEE-SEETTST-S-HHHHHHHHHHHHHHH
T ss_pred cCCCccccCCHHHHHHHHHHHHHcCCEEEeCCCCcccHHHHHHHHcCCCEEeeceecCCCCC-HHHHHHHHHHHHHhh
Confidence 457888888776554 344558999987764 3578999999999997777676522 224444444444443
No 77
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=38.89 E-value=53 Score=23.39 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=35.2
Q ss_pred eeEEEeeeCCcccc---ChHHHHHH----Hhc-------CCcEeehhHHHHHH-HHHHCCCCEEEEEee
Q 034258 3 IEVCKLSTGDSLDM---SSQDETSI----TAN-------DATIKDMEGAAVAY-VADLFKVPAIFVKAV 56 (100)
Q Consensus 3 v~~G~i~SgD~fi~---~~~~~~~l----~~~-------~a~~vdME~aAva~-va~~~~vp~~~Ir~I 56 (100)
+..|.+.-.|.|++ +++..+.+ .+. ...++|.-+..+|. +|...|+|++.+|=-
T Consensus 14 ~~~~~~i~~~~~~~~~~~p~~l~~v~~~l~~~~~~~~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v~vRK~ 82 (191)
T TIGR01744 14 VLPGGILKVDSFLNHQIDPKLMQEVGEEFARRFADDGITKIVTIEASGIAPAIMTGLKLGVPVVFARKK 82 (191)
T ss_pred EcCCCEEEEehhhccccCHHHHHHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEEEEeC
Confidence 44566777777873 55443332 111 23446777777777 689999999999854
No 78
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=38.33 E-value=64 Score=17.97 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=17.9
Q ss_pred HHHHHHHHHCCCCEEEEEeeecC
Q 034258 37 AAVAYVADLFKVPAIFVKAVTDL 59 (100)
Q Consensus 37 aAva~va~~~~vp~~~Ir~ISD~ 59 (100)
..++.+|+..|+|+..+.+..-.
T Consensus 14 ~l~~~llr~~GIpar~v~g~~~~ 36 (68)
T smart00460 14 ALFVALLRSLGIPARVVSGYLKA 36 (68)
T ss_pred HHHHHHHHHCCCCeEEEeeeecC
Confidence 34566899999999999886443
No 79
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=38.13 E-value=1e+02 Score=25.17 Aligned_cols=53 Identities=21% Similarity=0.215 Sum_probs=33.6
Q ss_pred EEEeeeCCccccC-hHHH-----HHHHhcCCcEe-----------ehhHHHHHH-HHHHCCCCEEEEEeee
Q 034258 5 VCKLSTGDSLDMS-SQDE-----TSITANDATIK-----------DMEGAAVAY-VADLFKVPAIFVKAVT 57 (100)
Q Consensus 5 ~G~i~SgD~fi~~-~~~~-----~~l~~~~a~~v-----------dME~aAva~-va~~~~vp~~~Ir~IS 57 (100)
.+++.+||.++.. .+.. +.+++.+++.+ -|=++.++. |-.+.++|.+.-=..=
T Consensus 47 vaTiiCGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaMy~E 117 (431)
T TIGR01917 47 VATVVCGDSFFGENLEEAKAKVLEMIKGANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAMYEE 117 (431)
T ss_pred EEEEEECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEeccc
Confidence 6899999999886 2221 33344466654 355566666 4666899987654443
No 80
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=37.99 E-value=1.4e+02 Score=21.88 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=22.7
Q ss_pred hcCCcEeeh--------------hHHHHHHHHHHCCCCEEEEEe
Q 034258 26 ANDATIKDM--------------EGAAVAYVADLFKVPAIFVKA 55 (100)
Q Consensus 26 ~~~a~~vdM--------------E~aAva~va~~~~vp~~~Ir~ 55 (100)
+.|+..++| |..++...|+++|+|++++..
T Consensus 101 ~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~~~ 144 (258)
T TIGR01949 101 RMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAMMY 144 (258)
T ss_pred HCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 337777766 567788899999999888544
No 81
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=37.80 E-value=37 Score=29.04 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=28.9
Q ss_pred ccccChHHHHHHHhc-CCcEeehhHHHHHHHHHHCCCCEEEE
Q 034258 13 SLDMSSQDETSITAN-DATIKDMEGAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 13 ~fi~~~~~~~~l~~~-~a~~vdME~aAva~va~~~~vp~~~I 53 (100)
.|+..|. ...+.+. .|..+|||+. +.+.+..+|+.++.|
T Consensus 626 m~yHrPk-yalLDEcTsAvsidvE~~-i~~~ak~~gi~llsi 665 (728)
T KOG0064|consen 626 MFYHRPK-YALLDECTSAVSIDVEGK-IFQAAKDAGISLLSI 665 (728)
T ss_pred HHhcCcc-hhhhhhhhcccccchHHH-HHHHHHhcCceEEEe
Confidence 3555443 3445554 8999999986 789999999998875
No 82
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=37.75 E-value=1e+02 Score=25.12 Aligned_cols=53 Identities=21% Similarity=0.262 Sum_probs=33.5
Q ss_pred EEEeeeCCccccC-hHHH-----HHHHhcCCcEe-----------ehhHHHHHH-HHHHCCCCEEEEEeee
Q 034258 5 VCKLSTGDSLDMS-SQDE-----TSITANDATIK-----------DMEGAAVAY-VADLFKVPAIFVKAVT 57 (100)
Q Consensus 5 ~G~i~SgD~fi~~-~~~~-----~~l~~~~a~~v-----------dME~aAva~-va~~~~vp~~~Ir~IS 57 (100)
.+++.+||.++.. .+.. +.+++.+++.+ -|=++.++. |-.+.++|.+.-=..=
T Consensus 47 vaTiiCGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~My~E 117 (431)
T TIGR01918 47 VHTVVCGDSFFGENLEEAVARVLEMLKDKEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSMYVE 117 (431)
T ss_pred EEEEEECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEeccc
Confidence 6899999999886 2221 33344466654 345556666 4666899987654443
No 83
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=37.63 E-value=42 Score=25.47 Aligned_cols=28 Identities=29% Similarity=0.515 Sum_probs=24.3
Q ss_pred CcEeehhHHHHHH-HHHHCCCCEEEEEee
Q 034258 29 ATIKDMEGAAVAY-VADLFKVPAIFVKAV 56 (100)
Q Consensus 29 a~~vdME~aAva~-va~~~~vp~~~Ir~I 56 (100)
..++++-|..+|+ +|...|+|++.+|==
T Consensus 132 VvgvetkGIpLA~avA~~L~vp~vivRK~ 160 (268)
T TIGR01743 132 VMTVATKGIPLAYAVASVLNVPLVIVRKD 160 (268)
T ss_pred EEEEccchHHHHHHHHHHHCCCEEEEEEC
Confidence 4568999999998 899999999999964
No 84
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=37.47 E-value=42 Score=23.87 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=26.2
Q ss_pred CcEeehhHHHHHH-HHHHCCCCEEEEEee-ecCC
Q 034258 29 ATIKDMEGAAVAY-VADLFKVPAIFVKAV-TDLV 60 (100)
Q Consensus 29 a~~vdME~aAva~-va~~~~vp~~~Ir~I-SD~~ 60 (100)
..+++|-|..+|. +|...|+|++.+|=- .++.
T Consensus 77 I~g~~~~GiplA~~vA~~l~~p~v~vRK~~k~~g 110 (187)
T PRK13810 77 VAGVELGGVPLATAVSLETGLPLLIVRKSVKDYG 110 (187)
T ss_pred EEEEccchHHHHHHHHHHhCCCEEEEecCCCccC
Confidence 5678999999998 788999999999875 4443
No 85
>PLN02565 cysteine synthase
Probab=37.07 E-value=37 Score=25.99 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHCCCCEEEE
Q 034258 35 EGAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 35 E~aAva~va~~~~vp~~~I 53 (100)
=+.|+|.+|+.+|+|+.++
T Consensus 78 ~g~alA~~a~~~G~~~~iv 96 (322)
T PLN02565 78 TGIGLAFMAAAKGYKLIIT 96 (322)
T ss_pred HHHHHHHHHHHcCCeEEEE
Confidence 3689999999999998864
No 86
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=36.93 E-value=1.5e+02 Score=21.87 Aligned_cols=30 Identities=13% Similarity=0.117 Sum_probs=23.5
Q ss_pred HHhcCCcEeeh--------------hHHHHHHHHHHCCCCEEEE
Q 034258 24 ITANDATIKDM--------------EGAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 24 l~~~~a~~vdM--------------E~aAva~va~~~~vp~~~I 53 (100)
..+.|+++++| |...+...|+++|+|++++
T Consensus 102 A~~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi 145 (267)
T PRK07226 102 AIKLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAM 145 (267)
T ss_pred HHHcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 34448887777 5677888999999998885
No 87
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=36.88 E-value=39 Score=25.67 Aligned_cols=18 Identities=44% Similarity=0.637 Sum_probs=15.9
Q ss_pred HHHHHHHHHHCCCCEEEE
Q 034258 36 GAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~I 53 (100)
+.|+|.+|..+|+|+.++
T Consensus 63 g~alA~~a~~~G~~~~iv 80 (316)
T cd06448 63 GLAAAYAARKLGVPCTIV 80 (316)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 679999999999998775
No 88
>PRK08813 threonine dehydratase; Provisional
Probab=36.32 E-value=40 Score=26.36 Aligned_cols=19 Identities=37% Similarity=0.307 Sum_probs=16.7
Q ss_pred HHHHHHHHHHCCCCEEEEE
Q 034258 36 GAAVAYVADLFKVPAIFVK 54 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~Ir 54 (100)
+.|+|++|+.+|+|+.++=
T Consensus 93 G~alA~aa~~~Gi~~~Ivv 111 (349)
T PRK08813 93 AQGVAWSAYRLGVQAITVM 111 (349)
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 6799999999999988753
No 89
>PRK07048 serine/threonine dehydratase; Validated
Probab=35.99 E-value=41 Score=25.41 Aligned_cols=18 Identities=39% Similarity=0.576 Sum_probs=15.9
Q ss_pred HHHHHHHHHHCCCCEEEE
Q 034258 36 GAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~I 53 (100)
+.|+|.+|+.+|+|+.++
T Consensus 84 g~alA~~a~~~G~~~~vv 101 (321)
T PRK07048 84 AQAIALSARLLGIPATIV 101 (321)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 679999999999998764
No 90
>PRK06815 hypothetical protein; Provisional
Probab=35.93 E-value=40 Score=25.48 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=16.4
Q ss_pred HHHHHHHHHHCCCCEEEEE
Q 034258 36 GAAVAYVADLFKVPAIFVK 54 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~Ir 54 (100)
+.|+|.+|+.+|+|+.++-
T Consensus 80 g~alA~~a~~~G~~~~i~~ 98 (317)
T PRK06815 80 GQGVALAAKLAGIPVTVYA 98 (317)
T ss_pred HHHHHHHHHHhCCCEEEEE
Confidence 3789999999999988764
No 91
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=35.48 E-value=44 Score=23.87 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=15.9
Q ss_pred HHHHHHHHHHCCCCEEEE
Q 034258 36 GAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~I 53 (100)
+.|+|.+|...|+|+.++
T Consensus 62 g~alA~~a~~~g~~~~v~ 79 (244)
T cd00640 62 GIALAAAAARLGLKCTIV 79 (244)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 478999999999999876
No 92
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=35.32 E-value=43 Score=25.01 Aligned_cols=18 Identities=33% Similarity=0.283 Sum_probs=16.0
Q ss_pred HHHHHHHHHHCCCCEEEE
Q 034258 36 GAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~I 53 (100)
+.|+|.+|+.+|+|+.++
T Consensus 70 g~alA~~a~~~G~~~~i~ 87 (299)
T TIGR01136 70 GIALAMVAAAKGYKLILT 87 (299)
T ss_pred HHHHHHHHHHcCCcEEEE
Confidence 578999999999998875
No 93
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=35.25 E-value=41 Score=25.18 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHCCCCEEEE
Q 034258 35 EGAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 35 E~aAva~va~~~~vp~~~I 53 (100)
=+.|+|.+|+.+|+|+.++
T Consensus 65 ~g~alA~~a~~~G~~~~i~ 83 (307)
T cd06449 65 HTRQVAAVAAKLGLKCVLV 83 (307)
T ss_pred HHHHHHHHHHHcCCeEEEE
Confidence 5689999999999998765
No 94
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=34.98 E-value=45 Score=24.64 Aligned_cols=19 Identities=42% Similarity=0.663 Sum_probs=16.3
Q ss_pred HHHHHHHHHHCCCCEEEEE
Q 034258 36 GAAVAYVADLFKVPAIFVK 54 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~Ir 54 (100)
+.|+|.+|+.+|+|++++=
T Consensus 77 g~alA~~a~~~G~~~~ivv 95 (304)
T cd01562 77 AQGVAYAAKLLGIPATIVM 95 (304)
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 5789999999999988754
No 95
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=34.27 E-value=45 Score=24.85 Aligned_cols=18 Identities=33% Similarity=0.285 Sum_probs=16.1
Q ss_pred HHHHHHHHHHCCCCEEEE
Q 034258 36 GAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~I 53 (100)
+.|+|.+|+.+|+|+.++
T Consensus 69 g~alA~~a~~~Gl~~~i~ 86 (298)
T TIGR01139 69 GIALAMVAAARGYKLILT 86 (298)
T ss_pred HHHHHHHHHHcCCeEEEE
Confidence 578999999999998775
No 96
>PRK06110 hypothetical protein; Provisional
Probab=34.14 E-value=46 Score=25.23 Aligned_cols=18 Identities=33% Similarity=0.473 Sum_probs=16.5
Q ss_pred HHHHHHHHHHCCCCEEEE
Q 034258 36 GAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~I 53 (100)
+.|+|.+|..+|+|+.++
T Consensus 82 g~alA~~a~~~G~~~~iv 99 (322)
T PRK06110 82 GQSVAFAARRHGLAATIV 99 (322)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 679999999999998887
No 97
>PRK09213 pur operon repressor; Provisional
Probab=34.08 E-value=51 Score=25.05 Aligned_cols=27 Identities=30% Similarity=0.589 Sum_probs=23.6
Q ss_pred CcEeehhHHHHHH-HHHHCCCCEEEEEe
Q 034258 29 ATIKDMEGAAVAY-VADLFKVPAIFVKA 55 (100)
Q Consensus 29 a~~vdME~aAva~-va~~~~vp~~~Ir~ 55 (100)
..++++-|-.+|+ +|...|+|++.+|=
T Consensus 134 Vvtvet~GIplA~~vA~~L~vp~vivRK 161 (271)
T PRK09213 134 VMTVETKGIPLAYAVANYLNVPFVIVRR 161 (271)
T ss_pred EEEEccccHHHHHHHHHHHCCCEEEEEE
Confidence 4558899999988 79999999999997
No 98
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=33.25 E-value=1.2e+02 Score=19.94 Aligned_cols=38 Identities=11% Similarity=0.164 Sum_probs=28.5
Q ss_pred EeeeCCc--cccChHHHHHHHhcCCcEeehhHHHHHHHHH
Q 034258 7 KLSTGDS--LDMSSQDETSITANDATIKDMEGAAVAYVAD 44 (100)
Q Consensus 7 ~i~SgD~--fi~~~~~~~~l~~~~a~~vdME~aAva~va~ 44 (100)
.+.||.. |--.++.++.+.+.+.-+.+|.+.|.....+
T Consensus 63 liGTG~~~~~~~~~~~~~~l~~~Gi~ve~m~T~aAcrTYN 102 (117)
T cd05126 63 VIGTGQSGALKVPPETVEKLEKRGVEVLVLPTEEAVKRYN 102 (117)
T ss_pred EEcCCCCccccCCHHHHHHHHhcCCEEEEcChHHHHHHHH
Confidence 5678887 3346777787777899999999988765543
No 99
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=33.24 E-value=54 Score=25.98 Aligned_cols=50 Identities=8% Similarity=0.082 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHCCCCEEEEEeeecCCCCCc---h-h---HHHHHHHHHHHHHHHHHHHHHH
Q 034258 35 EGAAVAYVADLFKVPAIFVKAVTDLVDGDK---P-T---AEEFMQNLVAVTAALEQSVSQV 88 (100)
Q Consensus 35 E~aAva~va~~~~vp~~~Ir~ISD~~~~~~---~-~---f~~~~~~a~~~s~~~~~~~~~~ 88 (100)
|-+.++.-|+++|+|.++.- +..+.. + + --+.+..|++.+++|.-+++|+
T Consensus 180 ~l~~i~~ea~~~GlPlv~~~----YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv 236 (348)
T PRK09250 180 EISEAFEEAHELGLATVLWS----YLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQ 236 (348)
T ss_pred HHHHHHHHHHHhCCCEEEEe----cccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEe
Confidence 67888899999999977731 111111 1 1 2468888899999987655544
No 100
>PLN02970 serine racemase
Probab=33.13 E-value=49 Score=25.22 Aligned_cols=18 Identities=44% Similarity=0.538 Sum_probs=15.9
Q ss_pred HHHHHHHHHHCCCCEEEE
Q 034258 36 GAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~I 53 (100)
+.|+|.+|+.+|+|+.++
T Consensus 87 g~alA~~a~~~G~~~~iv 104 (328)
T PLN02970 87 AAALALAAKLRGIPAYIV 104 (328)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 578999999999998775
No 101
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=32.85 E-value=58 Score=24.60 Aligned_cols=52 Identities=17% Similarity=0.151 Sum_probs=34.0
Q ss_pred eeCCccccChHHHHHHHhc-CCcEe---ehhHHHHHHHHHHCCCCEEEEEeeecCC
Q 034258 9 STGDSLDMSSQDETSITAN-DATIK---DMEGAAVAYVADLFKVPAIFVKAVTDLV 60 (100)
Q Consensus 9 ~SgD~fi~~~~~~~~l~~~-~a~~v---dME~aAva~va~~~~vp~~~Ir~ISD~~ 60 (100)
-.+|.|.......+.+.+. -++.- --++.+++.+|..+++|++..-.-++..
T Consensus 44 ~~~d~~~~~~~~c~ll~~~V~aiiGp~~s~~~~~~~~~~~~~~iP~i~~~~~~~~l 99 (382)
T cd06380 44 DTSDSFALTNAICSQLSRGVFAIFGSYDKSSVNTLTSYSDALHVPFITPSFPTNDL 99 (382)
T ss_pred cccchHHHHHHHHHHHhcCcEEEEecCcHHHHHHHHHHHhcCCCCeEecCCCcccC
Confidence 3468887666556666543 22221 3356688999999999999886655543
No 102
>PRK07476 eutB threonine dehydratase; Provisional
Probab=32.61 E-value=49 Score=25.10 Aligned_cols=18 Identities=33% Similarity=0.506 Sum_probs=15.8
Q ss_pred HHHHHHHHHHCCCCEEEE
Q 034258 36 GAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~I 53 (100)
+.|+|.+|..+|+|+.++
T Consensus 79 g~alA~~a~~~G~~~~i~ 96 (322)
T PRK07476 79 GRALAYAARALGIRATIC 96 (322)
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 578999999999998775
No 103
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=32.10 E-value=85 Score=23.40 Aligned_cols=33 Identities=30% Similarity=0.419 Sum_probs=25.1
Q ss_pred HHHHHhc--CCcEeehhHHHHHHHHHHCCCCEEEEE
Q 034258 21 ETSITAN--DATIKDMEGAAVAYVADLFKVPAIFVK 54 (100)
Q Consensus 21 ~~~l~~~--~a~~vdME~aAva~va~~~~vp~~~Ir 54 (100)
++.+++. +....|.+-.+ ..+|+..|||++.|-
T Consensus 86 ~~~l~~~~pDlVi~d~~~~~-~~aA~~~~iP~i~i~ 120 (321)
T TIGR00661 86 INIIREYNPDLIISDFEYST-VVAAKLLKIPVICIS 120 (321)
T ss_pred HHHHHhcCCCEEEECCchHH-HHHHHhcCCCEEEEe
Confidence 3455555 66777977777 779999999999764
No 104
>PRK06608 threonine dehydratase; Provisional
Probab=31.89 E-value=52 Score=25.33 Aligned_cols=18 Identities=39% Similarity=0.641 Sum_probs=16.3
Q ss_pred HHHHHHHHHHCCCCEEEE
Q 034258 36 GAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~I 53 (100)
+.|+|.+|+.+|+|+.++
T Consensus 84 g~alA~~a~~~G~~~~vv 101 (338)
T PRK06608 84 GQAVAYASKLFGIKTRIY 101 (338)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 678999999999998886
No 105
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=31.76 E-value=40 Score=26.99 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=19.0
Q ss_pred HHHHHHHHHCCCCEEEEEee-ecC
Q 034258 37 AAVAYVADLFKVPAIFVKAV-TDL 59 (100)
Q Consensus 37 aAva~va~~~~vp~~~Ir~I-SD~ 59 (100)
-+||.+|+++++|.+.|-+- .+.
T Consensus 306 igVA~~Akk~~vPvIaiaGs~~~~ 329 (378)
T COG1929 306 IGVAKLAKKYGVPVIAIAGSLGED 329 (378)
T ss_pred hHHHHhhhhhCCCEEEEecccccC
Confidence 47999999999999999873 443
No 106
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=31.66 E-value=38 Score=26.62 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=14.4
Q ss_pred HHHHHHHHHHCCCCEEE
Q 034258 36 GAAVAYVADLFKVPAIF 52 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~ 52 (100)
+--|+.+|+++|+|++.
T Consensus 175 akkva~ic~e~gvPlll 191 (382)
T COG1103 175 AKKVAKICREYGVPLLL 191 (382)
T ss_pred hHHHHHHHHHcCCceEe
Confidence 44689999999999875
No 107
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=31.45 E-value=51 Score=24.66 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHCCCCEEEE
Q 034258 35 EGAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 35 E~aAva~va~~~~vp~~~I 53 (100)
=+.|+|.+|+.+|+|+.++
T Consensus 69 ~g~alA~~a~~~G~~~~iv 87 (311)
T TIGR01275 69 HARATALAAKKLGLDAVLV 87 (311)
T ss_pred HHHHHHHHHHHhCCceEEE
Confidence 5689999999999998764
No 108
>PF14907 NTP_transf_5: Uncharacterised nucleotidyltransferase
Probab=31.12 E-value=49 Score=23.48 Aligned_cols=29 Identities=14% Similarity=0.078 Sum_probs=24.5
Q ss_pred CcEeehhHHHHHHHHHHCCCCEEEEEeee
Q 034258 29 ATIKDMEGAAVAYVADLFKVPAIFVKAVT 57 (100)
Q Consensus 29 a~~vdME~aAva~va~~~~vp~~~Ir~IS 57 (100)
-....-|...+.....+.|||++.+|++.
T Consensus 53 n~~~~~~~~~i~~~l~~~gI~~~~lKG~~ 81 (249)
T PF14907_consen 53 NLRLLAELQEILAALNANGIPVILLKGAA 81 (249)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEchHH
Confidence 44456688889999999999999999985
No 109
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=30.96 E-value=55 Score=24.58 Aligned_cols=19 Identities=16% Similarity=0.099 Sum_probs=16.2
Q ss_pred HHHHHHHHHHCCCCEEEEE
Q 034258 36 GAAVAYVADLFKVPAIFVK 54 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~Ir 54 (100)
+.|+|.+|..+|+|+.++=
T Consensus 82 g~alA~~a~~~G~~~~ivv 100 (324)
T cd01563 82 SASLAAYAARAGIKCVVFL 100 (324)
T ss_pred HHHHHHHHHHcCCceEEEE
Confidence 5789999999999987753
No 110
>PRK10717 cysteine synthase A; Provisional
Probab=30.63 E-value=56 Score=24.76 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=15.9
Q ss_pred HHHHHHHHHHCCCCEEEE
Q 034258 36 GAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~I 53 (100)
+.|+|.+|+.+|+|+.++
T Consensus 76 g~alA~~a~~~G~~~~vv 93 (330)
T PRK10717 76 GIGLALVAAARGYKTVIV 93 (330)
T ss_pred HHHHHHHHHHcCCcEEEE
Confidence 578999999999998775
No 111
>PLN00011 cysteine synthase
Probab=30.49 E-value=54 Score=24.92 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=15.7
Q ss_pred HHHHHHHHHHCCCCEEEE
Q 034258 36 GAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~I 53 (100)
+.|+|.+|+.+|+|+.++
T Consensus 81 g~alA~~a~~~G~~~~iv 98 (323)
T PLN00011 81 GIGLACIGAARGYKVILV 98 (323)
T ss_pred HHHHHHHHHHcCCeEEEE
Confidence 578999999999998775
No 112
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=30.34 E-value=54 Score=24.91 Aligned_cols=18 Identities=11% Similarity=0.178 Sum_probs=16.2
Q ss_pred HHHHHHHHHHCCCCEEEE
Q 034258 36 GAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~I 53 (100)
+.|+|.+|+.+|+|+.++
T Consensus 78 g~alA~~a~~~G~~~~i~ 95 (331)
T PRK03910 78 ARQTAAAAAKLGLKCVLL 95 (331)
T ss_pred HHHHHHHHHHhCCcEEEE
Confidence 689999999999998874
No 113
>PRK07334 threonine dehydratase; Provisional
Probab=29.99 E-value=58 Score=25.58 Aligned_cols=18 Identities=39% Similarity=0.580 Sum_probs=16.1
Q ss_pred HHHHHHHHHHCCCCEEEE
Q 034258 36 GAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~I 53 (100)
+.|+|.+|..+|+|+.++
T Consensus 83 g~alA~~a~~~G~~~~iv 100 (403)
T PRK07334 83 AQGVAYHAQRLGIPATIV 100 (403)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 679999999999998874
No 114
>PRK07409 threonine synthase; Validated
Probab=29.88 E-value=59 Score=24.98 Aligned_cols=23 Identities=17% Similarity=0.059 Sum_probs=18.6
Q ss_pred EeehhHHHHHHHHHHCCCCEEEEE
Q 034258 31 IKDMEGAAVAYVADLFKVPAIFVK 54 (100)
Q Consensus 31 ~vdME~aAva~va~~~~vp~~~Ir 54 (100)
.-.+ +.|+|.+|..+|+|+.++=
T Consensus 86 sGN~-g~alA~~a~~~G~~~~ivv 108 (353)
T PRK07409 86 TGNT-SASAAAYAARAGLKAFVLI 108 (353)
T ss_pred CcHH-HHHHHHHHHHcCCCEEEEE
Confidence 3455 7999999999999987654
No 115
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=29.68 E-value=59 Score=25.73 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=27.7
Q ss_pred eeeCCccccChHHHHHHHhcCCcEeehhHHHHHHHHHHCCCCEEEEEeeecC
Q 034258 8 LSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPAIFVKAVTDL 59 (100)
Q Consensus 8 i~SgD~fi~~~~~~~~l~~~~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~ 59 (100)
|+..|+...+-+..++|- ++-+|-+|+.+||||.+.==+|..
T Consensus 233 iVGADRI~~nGdvaNKIG----------TY~lAvlAk~~gIPFyVaAP~sTi 274 (346)
T COG0182 233 IVGADRIAANGDVANKIG----------TYQLAVLAKHHGIPFYVAAPLSTI 274 (346)
T ss_pred EEccceeecCCcchhhhh----------HHHHHHHHHHcCCCeEEEcccCcc
Confidence 445555555544433332 467889999999999997656653
No 116
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=29.56 E-value=61 Score=25.07 Aligned_cols=18 Identities=39% Similarity=0.623 Sum_probs=15.8
Q ss_pred HHHHHHHHHHCCCCEEEE
Q 034258 36 GAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~I 53 (100)
+.|+|.+|..+|+|+.++
T Consensus 60 g~alA~~a~~~G~~~~iv 77 (380)
T TIGR01127 60 AQGVAYAAKKFGIKAVIV 77 (380)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 678999999999998863
No 117
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=29.36 E-value=48 Score=24.22 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=16.3
Q ss_pred HHHHHHHHHHCCCCEEEEE
Q 034258 36 GAAVAYVADLFKVPAIFVK 54 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~Ir 54 (100)
+.|+|++|..+|+|+.++=
T Consensus 68 g~a~A~~a~~~g~~~~i~~ 86 (306)
T PF00291_consen 68 GRALAYAAARLGLKCTIVV 86 (306)
T ss_dssp HHHHHHHHHHHTCEEEEEE
T ss_pred eehhhhhhhhccccceeee
Confidence 5789999999999987764
No 118
>PRK06852 aldolase; Validated
Probab=29.31 E-value=54 Score=25.39 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHCCCCEEEEEeeecCCCCCc--h-hHHHHHHHHHHHHHHHHHHHHH
Q 034258 35 EGAAVAYVADLFKVPAIFVKAVTDLVDGDK--P-TAEEFMQNLVAVTAALEQSVSQ 87 (100)
Q Consensus 35 E~aAva~va~~~~vp~~~Ir~ISD~~~~~~--~-~f~~~~~~a~~~s~~~~~~~~~ 87 (100)
+-+.++.-|+++|+|.++.- +..+.. . .--+++..+++.+++|.-+++|
T Consensus 155 ~l~~v~~ea~~~GlPll~~~----yprG~~i~~~~~~~~ia~aaRiaaELGADIVK 206 (304)
T PRK06852 155 EAAQIIYEAHKHGLIAVLWI----YPRGKAVKDEKDPHLIAGAAGVAACLGADFVK 206 (304)
T ss_pred HHHHHHHHHHHhCCcEEEEe----eccCcccCCCccHHHHHHHHHHHHHHcCCEEE
Confidence 66788889999999987732 221211 1 2236788888888888755444
No 119
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=29.28 E-value=72 Score=22.33 Aligned_cols=28 Identities=7% Similarity=0.043 Sum_probs=24.4
Q ss_pred CCcEeehhHHHHHH-HHHHCCCCEEEEEe
Q 034258 28 DATIKDMEGAAVAY-VADLFKVPAIFVKA 55 (100)
Q Consensus 28 ~a~~vdME~aAva~-va~~~~vp~~~Ir~ 55 (100)
-..++|+.+..+|. +|...|+|++.+|-
T Consensus 61 ~ivg~~~ggi~lA~~lA~~l~~p~~~~rk 89 (176)
T PRK13812 61 KLAGVALGAVPLVAVTSVETGVPYVIARK 89 (176)
T ss_pred EEEEeecchHHHHHHHHHHHCCCEEEEec
Confidence 36679999999998 78999999999887
No 120
>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors
Probab=29.24 E-value=44 Score=24.08 Aligned_cols=50 Identities=12% Similarity=0.219 Sum_probs=31.6
Q ss_pred CCccccChHHHHHHHhcCCc-----EeehhHHHHHHHHHHCCCCEEEEEeeecCC
Q 034258 11 GDSLDMSSQDETSITANDAT-----IKDMEGAAVAYVADLFKVPAIFVKAVTDLV 60 (100)
Q Consensus 11 gD~fi~~~~~~~~l~~~~a~-----~vdME~aAva~va~~~~vp~~~Ir~ISD~~ 60 (100)
+|.+.......+.+.+.++. ....++.+++.+|..+++|++....-++..
T Consensus 46 ~d~~~~~~~~c~l~~~~~v~ai~G~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~ 100 (328)
T cd06351 46 NDPFSLLRAVCDLLVSQGVAAIFGPTSSESASAVQSICDALEIPHISISGGSEGL 100 (328)
T ss_pred CChHHHHHHHHHHHhccCcEEEECCCCHHHHHHHHHHhccCCCCeEEeecCcccc
Confidence 45554433334444333322 235677788999999999999987666544
No 121
>PRK06352 threonine synthase; Validated
Probab=29.10 E-value=60 Score=25.08 Aligned_cols=19 Identities=32% Similarity=0.114 Sum_probs=16.8
Q ss_pred HHHHHHHHHHCCCCEEEEE
Q 034258 36 GAAVAYVADLFKVPAIFVK 54 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~Ir 54 (100)
+.|+|.+|..+|+|+.++=
T Consensus 87 G~AlA~~aa~~G~~~~ivv 105 (351)
T PRK06352 87 SAAAAAYATRAGLKAYIVI 105 (351)
T ss_pred HHHHHHHHHHcCCcEEEEE
Confidence 6889999999999988764
No 122
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=28.65 E-value=63 Score=24.52 Aligned_cols=18 Identities=39% Similarity=0.374 Sum_probs=16.0
Q ss_pred HHHHHHHHHHCCCCEEEE
Q 034258 36 GAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~I 53 (100)
+.|+|.+|+..|+|+.++
T Consensus 79 g~alA~~a~~~G~~~~v~ 96 (317)
T TIGR02991 79 GRALAYAAAEEGVRATIC 96 (317)
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 679999999999998774
No 123
>PRK08638 threonine dehydratase; Validated
Probab=28.54 E-value=64 Score=24.78 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=18.2
Q ss_pred HHHHHHHHHHCCCCEEEEEeeecCC
Q 034258 36 GAAVAYVADLFKVPAIFVKAVTDLV 60 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~Ir~ISD~~ 60 (100)
+.|+|.+|..+|+|+.+ .+.+..
T Consensus 87 g~alA~~aa~~G~~~~i--v~p~~~ 109 (333)
T PRK08638 87 AQGVALSCALLGIDGKV--VMPKGA 109 (333)
T ss_pred HHHHHHHHHHcCCCEEE--EeCCCC
Confidence 58999999999999887 344444
No 124
>PRK06721 threonine synthase; Reviewed
Probab=28.48 E-value=64 Score=24.90 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=16.3
Q ss_pred HHHHHHHHHHCCCCEEEEE
Q 034258 36 GAAVAYVADLFKVPAIFVK 54 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~Ir 54 (100)
+.|+|.+|..+|+|+.++=
T Consensus 87 G~alA~~aa~~G~~~~vvv 105 (352)
T PRK06721 87 SASAAAYAARLGMKCIIVI 105 (352)
T ss_pred HHHHHHHHHHCCCcEEEEE
Confidence 5789999999999987754
No 125
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=28.45 E-value=75 Score=22.62 Aligned_cols=28 Identities=29% Similarity=0.307 Sum_probs=24.1
Q ss_pred CcEeehhHHHHHH-HHHHCCCCEEEEEee
Q 034258 29 ATIKDMEGAAVAY-VADLFKVPAIFVKAV 56 (100)
Q Consensus 29 a~~vdME~aAva~-va~~~~vp~~~Ir~I 56 (100)
..++|+-|..+|. +|...|+|++.+|=-
T Consensus 54 Ivg~e~~GiplA~~lA~~Lg~p~v~vRK~ 82 (189)
T PRK09219 54 ILTIEASGIAPAVMAALALGVPVVFAKKK 82 (189)
T ss_pred EEEEccccHHHHHHHHHHHCCCEEEEEEC
Confidence 4568999999988 799999999999964
No 126
>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 may be closer related to non-NMDA receptors. In contrast to GluRdelta2, GluRdel
Probab=28.30 E-value=66 Score=25.49 Aligned_cols=46 Identities=11% Similarity=0.249 Sum_probs=33.1
Q ss_pred EeeeCCccccChHHHHHHHhcCCcE-----eehhHHHHHHHHHHCCCCEEEE
Q 034258 7 KLSTGDSLDMSSQDETSITANDATI-----KDMEGAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 7 ~i~SgD~fi~~~~~~~~l~~~~a~~-----vdME~aAva~va~~~~vp~~~I 53 (100)
.+-.+|.|....+.-+.+ +.|+.+ --.+++.|..+|..++||++.+
T Consensus 42 ~~~~~d~F~~~~~ac~l~-~~gV~AI~Gp~s~~~a~~v~sic~~l~VP~is~ 92 (400)
T cd06392 42 SIEANNPFQAVQEACDLM-TQGILALVTSTGCASANALQSLTDAMHIPHLFV 92 (400)
T ss_pred ecCCCChhHHHHHHHHHH-hcCeEEEECCCchhHHHHHHHHhccCcCCcEee
Confidence 455678888766555555 333332 2578888899999999999987
No 127
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=28.19 E-value=66 Score=25.42 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=16.5
Q ss_pred HHHHHHHHHHCCCCEEEEE
Q 034258 36 GAAVAYVADLFKVPAIFVK 54 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~Ir 54 (100)
+.|+|.+|..+|+|+.++=
T Consensus 128 g~alA~~a~~~G~~~~Ivv 146 (399)
T PRK08206 128 GRGVAWAAQQLGQKAVIYM 146 (399)
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 6799999999999987753
No 128
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=28.14 E-value=65 Score=25.28 Aligned_cols=20 Identities=25% Similarity=0.228 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHCCCCEEEEE
Q 034258 35 EGAAVAYVADLFKVPAIFVK 54 (100)
Q Consensus 35 E~aAva~va~~~~vp~~~Ir 54 (100)
=+.|+|.+|+.+|+||.++=
T Consensus 110 ~G~alA~~a~~~Gl~~~Iv~ 129 (385)
T TIGR00263 110 HGVATATAAALLGLDCEVYM 129 (385)
T ss_pred HHHHHHHHHHHcCCCEEEEe
Confidence 46789999999999998874
No 129
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=28.13 E-value=65 Score=24.58 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=21.4
Q ss_pred cCCcE-eehhH------HHHHHHHHHCCCCEEEEE
Q 034258 27 NDATI-KDMEG------AAVAYVADLFKVPAIFVK 54 (100)
Q Consensus 27 ~~a~~-vdME~------aAva~va~~~~vp~~~Ir 54 (100)
.++.. +..++ .|+|.+|+.+|+|+.++.
T Consensus 64 ~G~~~vvs~ggs~gN~g~alA~~a~~~Gl~~~iv~ 98 (337)
T TIGR01274 64 QGCTTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQ 98 (337)
T ss_pred cCCCEEEECCCCcchHHHHHHHHHHHcCCcEEEEe
Confidence 36666 44333 899999999999998774
No 130
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=28.11 E-value=56 Score=22.96 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=16.9
Q ss_pred eehhHHH--HH-HHHHHCCCCEEEEEe
Q 034258 32 KDMEGAA--VA-YVADLFKVPAIFVKA 55 (100)
Q Consensus 32 vdME~aA--va-~va~~~~vp~~~Ir~ 55 (100)
+=.|+-+ +| .+|.+.|+||+.+|=
T Consensus 58 v~iea~Gi~~a~~vA~~Lgvp~v~vRK 84 (179)
T COG0503 58 VTIEARGIPLAAAVALELGVPFVPVRK 84 (179)
T ss_pred EEEccccchhHHHHHHHhCCCEEEEEe
Confidence 3344444 33 368999999999985
No 131
>PRK06186 hypothetical protein; Validated
Probab=28.02 E-value=57 Score=24.21 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=15.5
Q ss_pred ehhHH-HHHHHHHHCCCCEEEE
Q 034258 33 DMEGA-AVAYVADLFKVPAIFV 53 (100)
Q Consensus 33 dME~a-Ava~va~~~~vp~~~I 53 (100)
..||- ..++.|+++++||+.|
T Consensus 67 g~~Gki~ai~~Are~~iP~LGI 88 (229)
T PRK06186 67 NDDGALTAIRFARENGIPFLGT 88 (229)
T ss_pred cHhHHHHHHHHHHHcCCCeEee
Confidence 34443 3568899999999876
No 132
>PRK08198 threonine dehydratase; Provisional
Probab=27.89 E-value=67 Score=25.09 Aligned_cols=19 Identities=37% Similarity=0.520 Sum_probs=16.7
Q ss_pred HHHHHHHHHHCCCCEEEEE
Q 034258 36 GAAVAYVADLFKVPAIFVK 54 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~Ir 54 (100)
+.|+|..|+.+|+|+.++=
T Consensus 82 g~alA~~a~~~G~~~~iv~ 100 (404)
T PRK08198 82 AQGVAYAASLLGIKATIVM 100 (404)
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 6789999999999988864
No 133
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.58 E-value=72 Score=19.77 Aligned_cols=17 Identities=24% Similarity=0.513 Sum_probs=13.9
Q ss_pred HHHHHHHHCCCCEEEEE
Q 034258 38 AVAYVADLFKVPAIFVK 54 (100)
Q Consensus 38 Ava~va~~~~vp~~~Ir 54 (100)
.+-..|.++++|++..|
T Consensus 66 ~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 66 KVKKAAKKYGIPIIYSR 82 (97)
T ss_pred HHHHHHHHcCCcEEEEC
Confidence 34557999999999987
No 134
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=27.30 E-value=55 Score=24.62 Aligned_cols=18 Identities=33% Similarity=0.305 Sum_probs=16.0
Q ss_pred HHHHHHHHHHCCCCEEEE
Q 034258 36 GAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~I 53 (100)
+.|+|.+|..+|+|+.++
T Consensus 83 g~a~A~~a~~~g~~~~v~ 100 (328)
T TIGR00260 83 GAAAAAYAGKAGVKVVIL 100 (328)
T ss_pred HHHHHHHhccCCCcEEEE
Confidence 578999999999998886
No 135
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=27.13 E-value=67 Score=24.45 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=21.1
Q ss_pred cCCcE-eehh------HHHHHHHHHHCCCCEEEE
Q 034258 27 NDATI-KDME------GAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 27 ~~a~~-vdME------~aAva~va~~~~vp~~~I 53 (100)
.++.. ++.. +.|+|.+|..+|+|+.++
T Consensus 65 ~G~~~vvs~G~s~GN~g~alA~aa~~~G~~~~iv 98 (337)
T PRK12390 65 QGADTLVSIGGVQSNHTRQVAAVAAHLGMKCVLV 98 (337)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHHHHcCCeEEEE
Confidence 35555 6543 579999999999999887
No 136
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=26.45 E-value=74 Score=25.01 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=16.7
Q ss_pred HHHHHHHHHHCCCCEEEEE
Q 034258 36 GAAVAYVADLFKVPAIFVK 54 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~Ir 54 (100)
+.|+|.+|..+|+|+.++=
T Consensus 106 g~a~A~~Aa~~G~~~~I~v 124 (376)
T TIGR01747 106 GRGVAWAAQQLGQKAVVYM 124 (376)
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 7899999999999988753
No 137
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=26.27 E-value=74 Score=25.17 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=16.6
Q ss_pred HHHHHHHHHHCCCCEEEE
Q 034258 36 GAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~I 53 (100)
+.|+|.+|..+|+|+.++
T Consensus 125 g~alA~~aa~~Gi~~~Iv 142 (396)
T TIGR03528 125 GRGVAWAANQLGQKSVVY 142 (396)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 679999999999999887
No 138
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=26.20 E-value=1.3e+02 Score=22.70 Aligned_cols=53 Identities=15% Similarity=0.087 Sum_probs=34.4
Q ss_pred CccccChHHHHHHHh-c--CCcEeeh--hHHHHHHHHHHCCCCEEEEEeeecCCCCCc
Q 034258 12 DSLDMSSQDETSITA-N--DATIKDM--EGAAVAYVADLFKVPAIFVKAVTDLVDGDK 64 (100)
Q Consensus 12 D~fi~~~~~~~~l~~-~--~a~~vdM--E~aAva~va~~~~vp~~~Ir~ISD~~~~~~ 64 (100)
+.|+...+..+.+.. . =.+++|+ .-.++...|+++++|++..-+.....|+.+
T Consensus 106 ~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag~k~dp~~ 163 (268)
T PRK15116 106 DDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDPTQ 163 (268)
T ss_pred ecccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcccCCCCCe
Confidence 456553333333332 2 3456777 345688899999999999877777777654
No 139
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=25.96 E-value=1.4e+02 Score=19.33 Aligned_cols=44 Identities=14% Similarity=0.098 Sum_probs=32.1
Q ss_pred cChHHHHHHHhc----CCcEeehhHHHHHHHHHHCCCCEEEEEeeecC
Q 034258 16 MSSQDETSITAN----DATIKDMEGAAVAYVADLFKVPAIFVKAVTDL 59 (100)
Q Consensus 16 ~~~~~~~~l~~~----~a~~vdME~aAva~va~~~~vp~~~Ir~ISD~ 59 (100)
.+++..+.+.++ +.++-+-|+..++..-...+.|++++-...|.
T Consensus 41 ~~~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~ 88 (116)
T cd02991 41 CAPEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDN 88 (116)
T ss_pred CCHHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCC
Confidence 566777788775 55666667777777777778999998776664
No 140
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=25.68 E-value=74 Score=24.22 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=16.1
Q ss_pred HHHHHHHHHHCCCCEEEEE
Q 034258 36 GAAVAYVADLFKVPAIFVK 54 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~Ir 54 (100)
+.|+|.+|+.+|+|+.++-
T Consensus 84 g~alA~~a~~~G~~~~ivv 102 (329)
T PRK14045 84 AFVTGLAAKKLGLDAVLVL 102 (329)
T ss_pred HHHHHHHHHHcCCeEEEEE
Confidence 4689999999999987753
No 141
>PRK06260 threonine synthase; Validated
Probab=25.22 E-value=78 Score=24.79 Aligned_cols=22 Identities=14% Similarity=0.042 Sum_probs=18.6
Q ss_pred eehhHHHHHHHHHHCCCCEEEEE
Q 034258 32 KDMEGAAVAYVADLFKVPAIFVK 54 (100)
Q Consensus 32 vdME~aAva~va~~~~vp~~~Ir 54 (100)
-++ +.|+|.+|...|+|+.++=
T Consensus 124 GN~-g~alA~~aa~~G~~~~i~v 145 (397)
T PRK06260 124 GNT-SASLAAYAARAGLKCYVLL 145 (397)
T ss_pred cHH-HHHHHHHHHHcCCcEEEEE
Confidence 356 8999999999999988764
No 142
>PRK08246 threonine dehydratase; Provisional
Probab=24.99 E-value=82 Score=23.78 Aligned_cols=19 Identities=47% Similarity=0.607 Sum_probs=16.5
Q ss_pred HHHHHHHHHHCCCCEEEEE
Q 034258 36 GAAVAYVADLFKVPAIFVK 54 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~Ir 54 (100)
+.|+|.+|+.+|+|+.++=
T Consensus 80 g~a~A~~a~~~G~~~~iv~ 98 (310)
T PRK08246 80 GLAVAYAAAALGVPATVFV 98 (310)
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 5789999999999988764
No 143
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=24.81 E-value=1.7e+02 Score=22.95 Aligned_cols=33 Identities=12% Similarity=0.162 Sum_probs=24.9
Q ss_pred ehhHHHHHHHHHHCCCCEEEEEeeecCCCCCchhHHHH
Q 034258 33 DMEGAAVAYVADLFKVPAIFVKAVTDLVDGDKPTAEEF 70 (100)
Q Consensus 33 dME~aAva~va~~~~vp~~~Ir~ISD~~~~~~~~f~~~ 70 (100)
.+|..-+-+...+.|+|++.| |+.+ +..++.+.
T Consensus 337 ~~e~~~lk~~l~e~GIP~L~i----d~~~-~~~~~~q~ 369 (380)
T TIGR02263 337 LLERPMLAARCKEHGIPQIAF----KYAE-NSGQMQPI 369 (380)
T ss_pred hhhHHHHHHHHHHCCCCEEEE----EecC-ccchHHHH
Confidence 789999999999999999999 5554 32244443
No 144
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=24.81 E-value=2e+02 Score=20.88 Aligned_cols=46 Identities=15% Similarity=0.168 Sum_probs=29.7
Q ss_pred EeeeCCccccChHHHHHHHhc--CCcEee-------hhHHHHHHHHHHCCCCEEE
Q 034258 7 KLSTGDSLDMSSQDETSITAN--DATIKD-------MEGAAVAYVADLFKVPAIF 52 (100)
Q Consensus 7 ~i~SgD~fi~~~~~~~~l~~~--~a~~vd-------ME~aAva~va~~~~vp~~~ 52 (100)
+|+.+..+.+-.+.++.+.+. +...+| .|+-.++..|+.+|+|+..
T Consensus 182 pia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~ 236 (265)
T cd03315 182 PIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMV 236 (265)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHHHHHHHHHcCCcEEe
Confidence 466666765544444555444 444455 4566889999999999764
No 145
>PLN02618 tryptophan synthase, beta chain
Probab=24.66 E-value=81 Score=25.30 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=18.8
Q ss_pred HHHHHHHHHHCCCCEEEEEeeec
Q 034258 36 GAAVAYVADLFKVPAIFVKAVTD 58 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~Ir~ISD 58 (100)
+.|+|.+|..+|+||.++=.-.|
T Consensus 132 G~AlA~aaa~~Gl~~~I~m~~~~ 154 (410)
T PLN02618 132 GVATATVCARFGLECIVYMGAQD 154 (410)
T ss_pred HHHHHHHHHHcCCcEEEEEcCCc
Confidence 38999999999999988755433
No 146
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=24.62 E-value=1.2e+02 Score=22.98 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=24.1
Q ss_pred CCcEee-hhHHHHHHHHHHCCCCEEEEEeeecCC
Q 034258 28 DATIKD-MEGAAVAYVADLFKVPAIFVKAVTDLV 60 (100)
Q Consensus 28 ~a~~vd-ME~aAva~va~~~~vp~~~Ir~ISD~~ 60 (100)
+.+..| |..++ ..+|.++|+|++.+-......
T Consensus 106 Dlvi~d~~~~~~-~~~A~~~giP~v~~~~~~~~~ 138 (401)
T cd03784 106 DLVVADPLAFAG-AVAAEALGIPAVRLLLGPDTP 138 (401)
T ss_pred CEEEeCcHHHHH-HHHHHHhCCCeEEeecccCCc
Confidence 677888 66544 778999999999887655443
No 147
>PRK07591 threonine synthase; Validated
Probab=24.52 E-value=82 Score=25.01 Aligned_cols=19 Identities=16% Similarity=-0.022 Sum_probs=16.6
Q ss_pred HHHHHHHHHHCCCCEEEEE
Q 034258 36 GAAVAYVADLFKVPAIFVK 54 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~Ir 54 (100)
+.|+|.+|..+|+|+.++=
T Consensus 149 g~alA~~aa~~Gl~~~I~v 167 (421)
T PRK07591 149 ANSVAAHAARAGLDSCVFI 167 (421)
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 6799999999999988763
No 148
>PRK06382 threonine dehydratase; Provisional
Probab=24.35 E-value=84 Score=24.74 Aligned_cols=19 Identities=32% Similarity=0.382 Sum_probs=16.3
Q ss_pred HHHHHHHHHHCCCCEEEEE
Q 034258 36 GAAVAYVADLFKVPAIFVK 54 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~Ir 54 (100)
+.|+|.+|..+|+|+.++=
T Consensus 85 g~a~A~aa~~~G~~~~ivm 103 (406)
T PRK06382 85 AQGVAYAASINGIDAKIVM 103 (406)
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 5689999999999988753
No 149
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=24.34 E-value=85 Score=24.84 Aligned_cols=19 Identities=16% Similarity=0.202 Sum_probs=16.6
Q ss_pred HHHHHHHHHHCCCCEEEEE
Q 034258 36 GAAVAYVADLFKVPAIFVK 54 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~Ir 54 (100)
+.|+|.+|..+|+|+.++-
T Consensus 76 g~a~A~~a~~~G~~~~iv~ 94 (409)
T TIGR02079 76 AQGFAYACRHLGVHGTVFM 94 (409)
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 6789999999999988764
No 150
>PRK12675 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=24.30 E-value=78 Score=20.67 Aligned_cols=26 Identities=27% Similarity=0.192 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHCCCCEEEEEeeecCCCCC
Q 034258 35 EGAAVAYVADLFKVPAIFVKAVTDLVDGD 63 (100)
Q Consensus 35 E~aAva~va~~~~vp~~~Ir~ISD~~~~~ 63 (100)
=+.++++.|+..|+|- +.+.|...++
T Consensus 77 aah~iaraay~~g~~~---~~~~d~~~~~ 102 (104)
T PRK12675 77 VSHAIARGAYKMGIKP---KVVVDMYAWD 102 (104)
T ss_pred HHHHHHHHHHHcCCCC---cccCcccccC
Confidence 4678999999999886 5666655433
No 151
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=24.12 E-value=86 Score=25.04 Aligned_cols=18 Identities=11% Similarity=0.185 Sum_probs=16.3
Q ss_pred HHHHHHHHHHCCCCEEEE
Q 034258 36 GAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~I 53 (100)
+.|+|.+|+.+|+|+.++
T Consensus 146 G~alA~~a~~~G~~~~Iv 163 (404)
T cd06447 146 GLSIGIMAAALGFKVTVH 163 (404)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 679999999999998875
No 152
>TIGR00269 conserved hypothetical protein TIGR00269.
Probab=24.01 E-value=1.9e+02 Score=18.32 Aligned_cols=49 Identities=14% Similarity=0.070 Sum_probs=27.1
Q ss_pred HHHHHHHCCCCEEEEEeeecCCCCCch-hHHHHHHHHHHHHHHHHHHHHHHh
Q 034258 39 VAYVADLFKVPAIFVKAVTDLVDGDKP-TAEEFMQNLVAVTAALEQSVSQVI 89 (100)
Q Consensus 39 va~va~~~~vp~~~Ir~ISD~~~~~~~-~f~~~~~~a~~~s~~~~~~~~~~~ 89 (100)
|...|..+|+|++....- +...... .+++++...-+.--.+-.+++..+
T Consensus 15 i~~ya~~~~lp~~~~~CP--~~~~a~R~~~k~~L~~LE~~~P~~k~~i~~s~ 64 (104)
T TIGR00269 15 VVLYAFLNELKVHLDECP--YSSLSVRARIRDFLYDLENKKPGVKFSVLRGF 64 (104)
T ss_pred HHHHHHHcCCCcCCCCCC--CCCCCchHHHHHHHHHHHHHCcChHHHHHHHH
Confidence 456788999998865532 2223322 667776655544333333444433
No 153
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=23.90 E-value=88 Score=26.03 Aligned_cols=64 Identities=20% Similarity=0.333 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHCCCCEEEEEeeecCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCccc
Q 034258 34 MEGAAVAYVADLFKVPAIFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFINGKRF 97 (100)
Q Consensus 34 ME~aAva~va~~~~vp~~~Ir~ISD~~~~~~~~f~~~~~~a~~~s~~~~~~~~~~~~~i~~~~~ 97 (100)
+-++-+.+.|...++|.+.+--|.-.-.+...++.......++..-.+..+-+..+.-|.|.+|
T Consensus 371 ~KgarfIe~c~q~~IPLi~l~ni~Gfm~g~~~e~~gIaK~gAklv~a~a~akvpkITiit~~sy 434 (536)
T KOG0540|consen 371 VKGARFIELCDQRNIPLIFLQNITGFMVGRAAEAGGIAKHGAKLVYAVACAKVPKITIITGGSY 434 (536)
T ss_pred hhhHHHHHHHHhcCCcEEEEEccCCccccchhhhhchhhhhhhhhhhhhhccCceEEEEecCcc
Confidence 5677899999999999999888877665655566666666665555555555555566655543
No 154
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=23.78 E-value=83 Score=24.74 Aligned_cols=18 Identities=33% Similarity=0.401 Sum_probs=15.7
Q ss_pred HHHHHHHHHHCCCCEEEE
Q 034258 36 GAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~I 53 (100)
+.|+|.+|+.+|+|+.++
T Consensus 74 g~alA~~a~~~G~~~~iv 91 (454)
T TIGR01137 74 GIGLALVAAIKGYKCIIV 91 (454)
T ss_pred HHHHHHHHHHcCCeEEEE
Confidence 568999999999998774
No 155
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=23.66 E-value=66 Score=24.11 Aligned_cols=25 Identities=4% Similarity=0.262 Sum_probs=21.1
Q ss_pred HHHHHHHHHHCCCCEEEEEeeecCC
Q 034258 36 GAAVAYVADLFKVPAIFVKAVTDLV 60 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~Ir~ISD~~ 60 (100)
+.+++.+|..+++|.+..-+-++..
T Consensus 79 ~~~~~~v~~~~~iP~Is~~~~~~~~ 103 (362)
T cd06367 79 AQILDFTSAQTRIPVVGISGRESIF 103 (362)
T ss_pred hhhhhhhhhhhcCcEEEeecccccc
Confidence 7788999999999999977766654
No 156
>PRK05434 phosphoglyceromutase; Provisional
Probab=23.62 E-value=3.6e+02 Score=22.38 Aligned_cols=44 Identities=25% Similarity=0.161 Sum_probs=34.1
Q ss_pred HHHHHHHHHHCCCCEEEEEeeecCCCCCchhHHHHHHHHHHHHH
Q 034258 36 GAAVAYVADLFKVPAIFVKAVTDLVDGDKPTAEEFMQNLVAVTA 79 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~Ir~ISD~~~~~~~~f~~~~~~a~~~s~ 79 (100)
-.|+...|.+.|++=+.|=++.|.-|-...+...|++...+..+
T Consensus 130 l~~l~~~a~~~g~~~v~vH~~~DGRD~~p~s~~~~i~~l~~~~~ 173 (507)
T PRK05434 130 LFALLELAKEEGVKKVYVHAFLDGRDTPPKSALGYLEELEAKLA 173 (507)
T ss_pred HHHHHHHHHHcCCCEEEEEEecCCCCCCchhHHHHHHHHHHHHH
Confidence 36889999999998899999999998766666666655444433
No 157
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=23.51 E-value=3.5e+02 Score=22.50 Aligned_cols=42 Identities=24% Similarity=0.228 Sum_probs=33.1
Q ss_pred HHHHHHHHHHCCCCEEEEEeeecCCCCCchhHHHHHHHHHHH
Q 034258 36 GAAVAYVADLFKVPAIFVKAVTDLVDGDKPTAEEFMQNLVAV 77 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~Ir~ISD~~~~~~~~f~~~~~~a~~~ 77 (100)
-.|+...|.+.|++=+.|=++.|.-|-...+...|+....+.
T Consensus 126 l~~l~~~a~~~g~~~v~vH~~~DGRD~~p~s~~~~~~~l~~~ 167 (501)
T TIGR01307 126 LIALIELAAERGIEKVVLHAFTDGRDTAPKSAESYLEQLQAF 167 (501)
T ss_pred HHHHHHHHHHcCCCeEEEEEecCCCCCCchhHHHHHHHHHHH
Confidence 368899999999998999999999987766667776554433
No 158
>PRK05638 threonine synthase; Validated
Probab=23.47 E-value=88 Score=24.92 Aligned_cols=18 Identities=28% Similarity=0.121 Sum_probs=16.2
Q ss_pred HHHHHHHHHHCCCCEEEE
Q 034258 36 GAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~I 53 (100)
+.|+|.+|...|+|+.++
T Consensus 124 g~alA~~aa~~G~~~~i~ 141 (442)
T PRK05638 124 AASVAAYSARAGKEAFVV 141 (442)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 689999999999998875
No 159
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=23.37 E-value=92 Score=24.41 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=16.3
Q ss_pred HHHHHHHHHHCCCCEEEE
Q 034258 36 GAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~I 53 (100)
+.|+|.+|..+|+|+.++
T Consensus 123 G~alA~~a~~~G~~~~iv 140 (368)
T PLN02556 123 GISLAFMAAMKGYKMILT 140 (368)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 568999999999999887
No 160
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=23.27 E-value=89 Score=24.79 Aligned_cols=18 Identities=39% Similarity=0.510 Sum_probs=16.5
Q ss_pred HHHHHHHHHHCCCCEEEE
Q 034258 36 GAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~I 53 (100)
+.|+|..|...|+|+.++
T Consensus 129 g~alA~~aa~~Gi~~~I~ 146 (398)
T TIGR03844 129 GRAFAEVSAITGQPVILV 146 (398)
T ss_pred HHHHHHHHHHcCCcEEEE
Confidence 689999999999999886
No 161
>PRK08639 threonine dehydratase; Validated
Probab=22.86 E-value=94 Score=24.62 Aligned_cols=19 Identities=21% Similarity=0.487 Sum_probs=16.5
Q ss_pred HHHHHHHHHHCCCCEEEEE
Q 034258 36 GAAVAYVADLFKVPAIFVK 54 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~Ir 54 (100)
+-|+|.+|..+|+|+.++=
T Consensus 85 g~alA~~a~~~G~~~~Ivm 103 (420)
T PRK08639 85 AQGVAYACRHLGIPGVIFM 103 (420)
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 5689999999999988764
No 162
>PLN00191 enolase
Probab=22.80 E-value=1.3e+02 Score=24.54 Aligned_cols=46 Identities=9% Similarity=0.062 Sum_probs=32.9
Q ss_pred EeeeCCccccChHHHHHHHhc---CCcEeeh-------hHHHHHHHHHHCCCCEEE
Q 034258 7 KLSTGDSLDMSSQDETSITAN---DATIKDM-------EGAAVAYVADLFKVPAIF 52 (100)
Q Consensus 7 ~i~SgD~fi~~~~~~~~l~~~---~a~~vdM-------E~aAva~va~~~~vp~~~ 52 (100)
+|+.+|.|+.++...+.+.+. ++..++. |+--++..|+.+|+|+.+
T Consensus 338 pIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGITea~~~a~lA~~~G~~~~i 393 (457)
T PLN00191 338 QIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTESIEAVKMSKAAGWGVMT 393 (457)
T ss_pred cEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHCCCEEEe
Confidence 577888998877765555443 5555553 666689999999999764
No 163
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=22.79 E-value=1.5e+02 Score=23.03 Aligned_cols=24 Identities=17% Similarity=-0.038 Sum_probs=17.8
Q ss_pred EeehhHHHHHHHHHHCCCCEEEEE
Q 034258 31 IKDMEGAAVAYVADLFKVPAIFVK 54 (100)
Q Consensus 31 ~vdME~aAva~va~~~~vp~~~Ir 54 (100)
.+.-=.+...-+||++|||++..-
T Consensus 43 ~~~iPp~~~idaAHknGV~Vlgti 66 (339)
T cd06547 43 AVTIPPADWINAAHRNGVPVLGTF 66 (339)
T ss_pred cccCCCcHHHHHHHhcCCeEEEEE
Confidence 333344677789999999999855
No 164
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=22.72 E-value=72 Score=19.18 Aligned_cols=14 Identities=36% Similarity=0.501 Sum_probs=10.6
Q ss_pred HHHHHHHCCCCEEE
Q 034258 39 VAYVADLFKVPAIF 52 (100)
Q Consensus 39 va~va~~~~vp~~~ 52 (100)
.+-+|+++|+|+++
T Consensus 45 ~aIlAr~~giP~iv 58 (80)
T PF00391_consen 45 AAILARELGIPAIV 58 (80)
T ss_dssp HHHHHHHTT-EEEE
T ss_pred HHHHHHHcCCCEEE
Confidence 45689999999876
No 165
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=22.68 E-value=91 Score=26.11 Aligned_cols=61 Identities=16% Similarity=0.316 Sum_probs=42.7
Q ss_pred HHHHHHHHHCCCCEEEEEeeecCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCccc
Q 034258 37 AAVAYVADLFKVPAIFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFINGKRF 97 (100)
Q Consensus 37 aAva~va~~~~vp~~~Ir~ISD~~~~~~~~f~~~~~~a~~~s~~~~~~~~~~~~~i~~~~~ 97 (100)
|=+.+.|..+++|.+.+-=++=+--+...++..-+..-++..-.+.+..+..+..|.+|.|
T Consensus 349 ArFI~~cd~~~iPlv~L~d~pGFm~G~~~E~~giik~Gakl~~A~aeatVPkitvI~rkay 409 (526)
T COG4799 349 ARFIRLCDAFNIPLVFLVDTPGFMPGTDQEYGGIIKHGAKLLYAVAEATVPKITVITRKAY 409 (526)
T ss_pred HHHHHhhhccCCCeEEEeCCCCCCCChhHHhChHHHhhhHHHhhHhhccCCeEEEEecccc
Confidence 4456899999999887644444444444588888888887777777777777766666543
No 166
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. In eukaryotes, transcription initiation of all protein encoding genes involves the polymerase II system. This sytem is modulated by both general and specific transcription factors. The general factors (which include TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIG and TFIIH) operate through common promoter elements, such as the TATA box. Transcription factor IIB (TFIIB) is of central importance in transcription of class II genes. It associates with TFIID-TFIIA bound to DNA (the DA complex) to form a ternary TFIID-IIA-IBB (DAB) complex, which is recognised by RNA polymerase II [, ]. TFIIB comprises ~315-340 residues and contains an imperfect C-terminal repeat of a 75-residue domain that may contribute to the symmetry of the folded protein. The basal archaeal transcription machinery resembles that of the eukaryotic polymerase II system and includes a homologue of TFIIB []. This entry represents a cyclin-like domain which is found repeated in the C-terminal region of a variety of eukaryotic TFIIB's and their archaeal counterparts. These domains individually form the typical cyclin fold, and in the transcription complex they straddle the C-terminal region of the TATA-binding protein - an interaction essential for the formation of the transcription initiation complex [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2PHG_A 1C9B_Q 1TFB_A 1VOL_A 3K7A_M 1AIS_B 1D3U_B.
Probab=22.54 E-value=86 Score=18.16 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=14.4
Q ss_pred ehhHHHHHHHHHHCCCCE
Q 034258 33 DMEGAAVAYVADLFKVPA 50 (100)
Q Consensus 33 dME~aAva~va~~~~vp~ 50 (100)
-+=+|+|..+|+.+|.|.
T Consensus 38 ~iaAA~iY~acr~~~~~~ 55 (71)
T PF00382_consen 38 SIAAACIYLACRLNGVPR 55 (71)
T ss_dssp HHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHHcCCCc
Confidence 344688899999999994
No 167
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=22.51 E-value=69 Score=27.45 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=22.1
Q ss_pred CCcEeehhHHHHHHHHHHCCCCEEEE
Q 034258 28 DATIKDMEGAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 28 ~a~~vdME~aAva~va~~~~vp~~~I 53 (100)
-|..+|||+ ++++.|++.|+-|+.|
T Consensus 599 SAv~~dvE~-~~Yr~~r~~giT~iSV 623 (659)
T KOG0060|consen 599 SAVTEDVEG-ALYRKCREMGITFISV 623 (659)
T ss_pred hhccHHHHH-HHHHHHHHcCCeEEEe
Confidence 688899997 5899999999999875
No 168
>PRK08526 threonine dehydratase; Provisional
Probab=22.49 E-value=97 Score=24.56 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=16.4
Q ss_pred HHHHHHHHHHCCCCEEEEE
Q 034258 36 GAAVAYVADLFKVPAIFVK 54 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~Ir 54 (100)
+.|+|.+|..+|+|+.++=
T Consensus 80 g~avA~aa~~~Gi~~~Ivm 98 (403)
T PRK08526 80 AQGVAISAKKFGIKAVIVM 98 (403)
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 6789999999999988743
No 169
>PRK08329 threonine synthase; Validated
Probab=22.47 E-value=98 Score=23.82 Aligned_cols=18 Identities=6% Similarity=-0.106 Sum_probs=16.8
Q ss_pred HHHHHHHHHHCCCCEEEE
Q 034258 36 GAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~I 53 (100)
+.|+|.+|...|+|+.++
T Consensus 116 g~alA~~aa~~G~~~~v~ 133 (347)
T PRK08329 116 ALSLALYSLSEGIKVHVF 133 (347)
T ss_pred HHHHHHHHHHcCCcEEEE
Confidence 789999999999999887
No 170
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=22.39 E-value=95 Score=24.09 Aligned_cols=18 Identities=28% Similarity=0.373 Sum_probs=15.6
Q ss_pred HHHHHHHHHHCCCCEEEE
Q 034258 36 GAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~I 53 (100)
++-+|..|++.++||.++
T Consensus 210 T~~lA~~A~e~~~Pf~v~ 227 (301)
T COG1184 210 TSPLALAARELRVPFYVV 227 (301)
T ss_pred hHHHHHHHHHhCCCEEEE
Confidence 467899999999999875
No 171
>PLN02208 glycosyltransferase family protein
Probab=22.32 E-value=1.3e+02 Score=24.13 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=22.6
Q ss_pred CCcEeehhHHHHHHHHHHCCCCEEEEEee
Q 034258 28 DATIKDMEGAAVAYVADLFKVPAIFVKAV 56 (100)
Q Consensus 28 ~a~~vdME~aAva~va~~~~vp~~~Ir~I 56 (100)
.++..|+ ..-...+|.++|||.+++-+.
T Consensus 109 ~cVV~D~-~~wa~~vA~e~giP~~~f~~~ 136 (442)
T PLN02208 109 DLIFFDF-AQWIPEMAKEHMIKSVSYIIV 136 (442)
T ss_pred eEEEECC-cHhHHHHHHHhCCCEEEEEhh
Confidence 5888998 777788999999998865443
No 172
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=22.06 E-value=50 Score=17.99 Aligned_cols=14 Identities=21% Similarity=0.385 Sum_probs=8.9
Q ss_pred HHHHHHHHHCCCCE
Q 034258 37 AAVAYVADLFKVPA 50 (100)
Q Consensus 37 aAva~va~~~~vp~ 50 (100)
-.+-++|..||||.
T Consensus 17 ~S~r~AA~~ygVp~ 30 (45)
T PF05225_consen 17 MSIRKAAKKYGVPR 30 (45)
T ss_dssp S-HHHHHHHHT--H
T ss_pred CCHHHHHHHHCcCH
Confidence 46788899999984
No 173
>COG1806 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.03 E-value=28 Score=26.69 Aligned_cols=25 Identities=16% Similarity=-0.094 Sum_probs=21.9
Q ss_pred CCcEeehhHHHHHHHHHHCCCCEEE
Q 034258 28 DATIKDMEGAAVAYVADLFKVPAIF 52 (100)
Q Consensus 28 ~a~~vdME~aAva~va~~~~vp~~~ 52 (100)
....+.+|-+.+-..|.++|+|++-
T Consensus 225 ~~~~~~eEl~~ae~l~~r~~~pvid 249 (273)
T COG1806 225 SLDQCREELAYAEALFRRNGIPVID 249 (273)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCEEe
Confidence 4566899999999999999999874
No 174
>PLN03013 cysteine synthase
Probab=22.00 E-value=99 Score=25.04 Aligned_cols=19 Identities=21% Similarity=0.301 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHCCCCEEEE
Q 034258 35 EGAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 35 E~aAva~va~~~~vp~~~I 53 (100)
=+.|+|.+|..+|+|+.++
T Consensus 186 ~G~ALA~~a~~~G~~~~Vv 204 (429)
T PLN03013 186 TGIGLAFIAASRGYRLILT 204 (429)
T ss_pred HHHHHHHHHHHcCCCEEEE
Confidence 3678999999999999775
No 175
>PRK09224 threonine dehydratase; Reviewed
Probab=21.86 E-value=98 Score=25.29 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=16.2
Q ss_pred HHHHHHHHHHCCCCEEEEE
Q 034258 36 GAAVAYVADLFKVPAIFVK 54 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~Ir 54 (100)
+.|+|.+|+.+|+|+.++=
T Consensus 80 a~avA~aa~~lGi~~~Ivm 98 (504)
T PRK09224 80 AQGVALSAARLGIKAVIVM 98 (504)
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 5689999999999987743
No 176
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=21.81 E-value=1e+02 Score=24.64 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHCCCCEEEEEeeec
Q 034258 35 EGAAVAYVADLFKVPAIFVKAVTD 58 (100)
Q Consensus 35 E~aAva~va~~~~vp~~~Ir~ISD 58 (100)
=+.|+|.+|..+|+||.++=.-.|
T Consensus 122 hG~A~A~aaa~~Gl~~~I~m~~~d 145 (402)
T PRK13028 122 HGVATATAAALFGLECEIYMGEVD 145 (402)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCc
Confidence 367899999999999999854333
No 177
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=21.66 E-value=95 Score=22.22 Aligned_cols=24 Identities=25% Similarity=0.093 Sum_probs=17.9
Q ss_pred EeehhHHHHHHHHHHCCCCEEEEE
Q 034258 31 IKDMEGAAVAYVADLFKVPAIFVK 54 (100)
Q Consensus 31 ~vdME~aAva~va~~~~vp~~~Ir 54 (100)
.-|=|..++|+-++..|+||++|-
T Consensus 92 ~~~~e~~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 92 STDEEAVALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp S--HHHHHHHHHHHHHT--EEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEE
Confidence 346689999999999999999876
No 178
>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor. Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure.
Probab=21.42 E-value=63 Score=24.73 Aligned_cols=29 Identities=21% Similarity=0.151 Sum_probs=23.3
Q ss_pred eehhHHHHHHHHHHCCCCEEEEEeeecCC
Q 034258 32 KDMEGAAVAYVADLFKVPAIFVKAVTDLV 60 (100)
Q Consensus 32 vdME~aAva~va~~~~vp~~~Ir~ISD~~ 60 (100)
..-++.+++.+|..+++|++.--+.++..
T Consensus 83 ~S~~~~~va~~a~~~~iP~Is~~a~~~~l 111 (405)
T cd06385 83 CDYTASPVARFTTHWDVPLVTAGAPALGF 111 (405)
T ss_pred ccchHHHHHHHHhccCCcEEccccChhhc
Confidence 34678889999999999999877765544
No 179
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=21.28 E-value=1e+02 Score=24.54 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHCCCCEEEEEeeec
Q 034258 34 MEGAAVAYVADLFKVPAIFVKAVTD 58 (100)
Q Consensus 34 ME~aAva~va~~~~vp~~~Ir~ISD 58 (100)
.=+.|+|.+|..+|+||.++=.-.|
T Consensus 117 nhG~A~A~~aa~~Gl~c~I~mp~~d 141 (397)
T PRK04346 117 QHGVATATAAALLGLECVIYMGAED 141 (397)
T ss_pred HHHHHHHHHHHHcCCcEEEEecCCc
Confidence 3567999999999999988765444
No 180
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=21.23 E-value=81 Score=26.43 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=19.7
Q ss_pred CCcEeehhHHHHHHHHHHCCCCEEEE
Q 034258 28 DATIKDMEGAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 28 ~a~~vdME~aAva~va~~~~vp~~~I 53 (100)
|+..---=++.|+.+|+.++||.++.
T Consensus 442 G~vysR~GTa~valvAna~nVPVlVC 467 (556)
T KOG1467|consen 442 GAVYSRVGTACVALVANAFNVPVLVC 467 (556)
T ss_pred cchhhhcchHHHHHHhcccCCCEEEE
Confidence 44444445678999999999998875
No 181
>PTZ00081 enolase; Provisional
Probab=21.17 E-value=1.8e+02 Score=23.62 Aligned_cols=46 Identities=13% Similarity=0.078 Sum_probs=32.6
Q ss_pred EeeeCCccccChHHHHHHHh-c--CCcEeeh-------hHHHHHHHHHHCCCCEEE
Q 034258 7 KLSTGDSLDMSSQDETSITA-N--DATIKDM-------EGAAVAYVADLFKVPAIF 52 (100)
Q Consensus 7 ~i~SgD~fi~~~~~~~~l~~-~--~a~~vdM-------E~aAva~va~~~~vp~~~ 52 (100)
.|+.+|.|++++.......+ . ++..+|. |+--++..|+.+|+++++
T Consensus 326 ~IvgDE~~~tn~~~l~~~I~~~aad~i~iKvnqiGGITe~l~~a~lA~~~Gi~~ii 381 (439)
T PTZ00081 326 QIVGDDLLVTNPTRIKKAIEKKACNALLLKVNQIGTVTEAIEAAKLAQKNGWGVMV 381 (439)
T ss_pred eEEcCCcccCCHHHHHHHHHhCCCCEEEeccccccCHHHHHHHHHHHHHcCCcEEE
Confidence 47777788887776544443 3 5555553 666699999999999665
No 182
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=21.11 E-value=2.6e+02 Score=19.36 Aligned_cols=28 Identities=21% Similarity=0.069 Sum_probs=15.9
Q ss_pred HHCCCCEEEEEeeecCCCCCchhHHHHHH
Q 034258 44 DLFKVPAIFVKAVTDLVDGDKPTAEEFMQ 72 (100)
Q Consensus 44 ~~~~vp~~~Ir~ISD~~~~~~~~f~~~~~ 72 (100)
+..|+.|++||+ ++...-..+.|..++.
T Consensus 21 k~~gi~fviiKa-teG~~~~D~~~~~~~~ 48 (191)
T cd06413 21 RAQGVSFAYIKA-TEGGDHVDKRFAENWR 48 (191)
T ss_pred HhCCCcEEEEEE-cCCCCccCHHHHHHHH
Confidence 467899999997 3333222235555443
No 183
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=20.94 E-value=1.1e+02 Score=25.16 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=16.2
Q ss_pred HHHHHHHHHHCCCCEEEEE
Q 034258 36 GAAVAYVADLFKVPAIFVK 54 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~Ir 54 (100)
+.|+|.+|+.+|+|+.++=
T Consensus 77 a~~vA~aa~~~Gi~~~Ivm 95 (499)
T TIGR01124 77 AQGVAFSAARLGLKALIVM 95 (499)
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 6789999999999987653
No 184
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=20.91 E-value=2.1e+02 Score=22.68 Aligned_cols=47 Identities=21% Similarity=0.213 Sum_probs=29.1
Q ss_pred HHHCCCCEEEEEeeecCCCCCc---h--hHHHHHHHHHHHHHHHHHHHHHHh
Q 034258 43 ADLFKVPAIFVKAVTDLVDGDK---P--TAEEFMQNLVAVTAALEQSVSQVI 89 (100)
Q Consensus 43 a~~~~vp~~~Ir~ISD~~~~~~---~--~f~~~~~~a~~~s~~~~~~~~~~~ 89 (100)
-++.++||+++--=.|..+.+- + +|..|.+...+.-..++..+.+.|
T Consensus 177 lyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~Sm 228 (366)
T KOG1532|consen 177 LYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSM 228 (366)
T ss_pred HHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhH
Confidence 4688999999988888888764 2 666665444332233334444444
No 185
>PLN02356 phosphateglycerate kinase
Probab=20.91 E-value=1.1e+02 Score=24.80 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=16.5
Q ss_pred HHHHHHHHHHCCCCEEEE
Q 034258 36 GAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~I 53 (100)
+.|+|.+|...|+|+.++
T Consensus 116 g~alA~~aa~~G~~~~iv 133 (423)
T PLN02356 116 AISLATVAPAYGCKCHVV 133 (423)
T ss_pred HHHHHHHHHHcCCcEEEE
Confidence 779999999999998886
No 186
>cd06523 GH25_PlyB-like PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis. PlyB has an N-terminal glycosyl hydrolase family 25 (GH25) catalytic domain and a C-terminal bacterial SH3-like domain, SH3b. Both domains are required for effective catalytic activity. Endolysins are produced by bacteriophages at the end of their life cycle and participate in lysing the bacterial cell in order to release the newly formed progeny. Endolysins (also referred to as endo-N-acetylmuramidases or peptidoglycan hydrolases) degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=20.79 E-value=2.2e+02 Score=19.59 Aligned_cols=26 Identities=0% Similarity=-0.124 Sum_probs=15.6
Q ss_pred HCCCCEEEEEeeecCCCCCchhHHHHH
Q 034258 45 LFKVPAIFVKAVTDLVDGDKPTAEEFM 71 (100)
Q Consensus 45 ~~~vp~~~Ir~ISD~~~~~~~~f~~~~ 71 (100)
..|++|++||+-. ..+-..+.|..+.
T Consensus 20 ~~g~~fviikate-G~~~~D~~f~~n~ 45 (177)
T cd06523 20 SKQLDLVIIRVQY-GSNYVDLKYKNNI 45 (177)
T ss_pred hCCCCEEEEEEeC-CCcccCHHHHHHH
Confidence 5699999999953 3322223454444
No 187
>smart00594 UAS UAS domain.
Probab=20.69 E-value=1.3e+02 Score=19.26 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=27.5
Q ss_pred cChHHHHHHHhc----CCcEeehhHHHHHHHHHHCCCCEEEEEe
Q 034258 16 MSSQDETSITAN----DATIKDMEGAAVAYVADLFKVPAIFVKA 55 (100)
Q Consensus 16 ~~~~~~~~l~~~----~a~~vdME~aAva~va~~~~vp~~~Ir~ 55 (100)
.+++..+.+.++ +++.-+-|+..++.-=...+.|++++=.
T Consensus 51 ~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~ 94 (122)
T smart00594 51 CNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVD 94 (122)
T ss_pred cCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEe
Confidence 355566777664 5666677887776666666889988764
No 188
>PRK06450 threonine synthase; Validated
Probab=20.69 E-value=1.1e+02 Score=23.54 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=16.4
Q ss_pred HHHHHHHHHHCCCCEEEE
Q 034258 36 GAAVAYVADLFKVPAIFV 53 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~I 53 (100)
+.|+|.+|...|+|+.++
T Consensus 109 g~slA~~aa~~G~~~~i~ 126 (338)
T PRK06450 109 GASIAAYGAAAGIEVKIF 126 (338)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 799999999999998775
No 189
>PLN02764 glycosyltransferase family protein
Probab=20.67 E-value=1.5e+02 Score=24.11 Aligned_cols=28 Identities=21% Similarity=0.161 Sum_probs=24.1
Q ss_pred CCcEeehhHHHHHHHHHHCCCCEEEEEee
Q 034258 28 DATIKDMEGAAVAYVADLFKVPAIFVKAV 56 (100)
Q Consensus 28 ~a~~vdME~aAva~va~~~~vp~~~Ir~I 56 (100)
.++..|| ..=...+|+++|||.+.+-+.
T Consensus 110 ~~iV~D~-~~w~~~vA~~~gIP~~~f~~~ 137 (453)
T PLN02764 110 DLIFFDF-AHWIPEVARDFGLKTVKYVVV 137 (453)
T ss_pred CEEEECC-chhHHHHHHHhCCCEEEEEcH
Confidence 6889999 888889999999998877553
No 190
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=20.63 E-value=1.1e+02 Score=23.73 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=16.5
Q ss_pred HHHHHHHHHHCCCCEEEEE
Q 034258 36 GAAVAYVADLFKVPAIFVK 54 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~Ir 54 (100)
+.|+|.+|..+|+|+.++=
T Consensus 95 g~alA~~a~~~G~~~~ivv 113 (365)
T cd06446 95 GVATATACALFGLECEIYM 113 (365)
T ss_pred HHHHHHHHHHhCCCeEEEE
Confidence 5789999999999988774
No 191
>TIGR02369 trimeth_pyl trimethylamine:corrinoid methyltransferase. This model represents a distinct subfamily of pfam06253. All members here are trimethylamine:corrinoid methyltransferases that contain a critical pyrrolysine residue incorporated during translation via a special tRNA for a TAG (amber) codon. Known members so far are from the genus Methanosarcina. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with dimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates trimethylamine, leaving dimethylamine, and methylates the prosthetic group of its small cognate corrinoid protein, MttC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.
Probab=20.37 E-value=1.5e+02 Score=24.51 Aligned_cols=37 Identities=30% Similarity=0.362 Sum_probs=27.9
Q ss_pred HHHHHHHHHHCCCCEEEEEeeecCCCCCch-hHHHHHH
Q 034258 36 GAAVAYVADLFKVPAIFVKAVTDLVDGDKP-TAEEFMQ 72 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~Ir~ISD~~~~~~~-~f~~~~~ 72 (100)
+++.+|.|+.+|+|+-+-=++||---.+.+ -|...+.
T Consensus 312 ~~~~~QlAr~ygLP~rs~gg~tdsK~~D~QAg~E~~~s 349 (489)
T TIGR02369 312 SAAVAKLAQFYGLPAFVAGTOADAKIPDNQAGHEKTMT 349 (489)
T ss_pred HHHHHHHHHHcCCCccccCCCcccCCcchHHHHHHHHH
Confidence 467899999999999888888887666655 5554443
No 192
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.13 E-value=1.8e+02 Score=19.86 Aligned_cols=39 Identities=10% Similarity=0.019 Sum_probs=31.9
Q ss_pred HHHHHHHHHHCCCCEEEEEeeecCCCCCch-hHHHHHHHH
Q 034258 36 GAAVAYVADLFKVPAIFVKAVTDLVDGDKP-TAEEFMQNL 74 (100)
Q Consensus 36 ~aAva~va~~~~vp~~~Ir~ISD~~~~~~~-~f~~~~~~a 74 (100)
.+++.+.+...|+++.-|=++...+++..- .|.+-+..+
T Consensus 47 ~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f~~Al~ea 86 (130)
T COG3453 47 FAAIAAAAEAAGLTYTHIPVTGGGITEADVEAFQRALDEA 86 (130)
T ss_pred hHHHHHHHHhcCCceEEeecCCCCCCHHHHHHHHHHHHHh
Confidence 478999999999999999999988887765 777766543
No 193
>PRK12483 threonine dehydratase; Reviewed
Probab=20.10 E-value=1.1e+02 Score=25.36 Aligned_cols=20 Identities=30% Similarity=0.321 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHCCCCEEEEE
Q 034258 35 EGAAVAYVADLFKVPAIFVK 54 (100)
Q Consensus 35 E~aAva~va~~~~vp~~~Ir 54 (100)
=+-|+|..|+.+|+|+.++=
T Consensus 96 ha~gvA~aA~~lGi~~~Ivm 115 (521)
T PRK12483 96 HAQGVALAAARLGVKAVIVM 115 (521)
T ss_pred HHHHHHHHHHHhCCCEEEEE
Confidence 36789999999999988753
No 194
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=20.02 E-value=2.5e+02 Score=19.28 Aligned_cols=28 Identities=14% Similarity=0.017 Sum_probs=16.2
Q ss_pred HCCCCEEEEEeeecCCCCCchhHHHHHHH
Q 034258 45 LFKVPAIFVKAVTDLVDGDKPTAEEFMQN 73 (100)
Q Consensus 45 ~~~vp~~~Ir~ISD~~~~~~~~f~~~~~~ 73 (100)
..|+.|++||+- ...+-..+.|..++..
T Consensus 19 ~~gi~fviiKat-eG~~y~D~~~~~~~~~ 46 (184)
T cd06525 19 DSGVEVVYIKAT-EGTTFVDSYFNENYNG 46 (184)
T ss_pred hCCCeEEEEEec-CCCcccCHhHHHHHHH
Confidence 568999999984 3332222355555543
Done!