BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034260
(100 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1E3J|A Chain A, Ketose Reductase (Sorbitol Dehydrogenase) From Silverleaf
Whitefly
Length = 352
Score = 43.1 bits (100), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 6 DVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAAR 51
+V+ DC+G K ++ ++ TR G + LVGMG +TVPL A AR
Sbjct: 242 NVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACAR 287
>pdb|1PL6|A Chain A, Human SdhNADHINHIBITOR COMPLEX
pdb|1PL6|B Chain B, Human SdhNADHINHIBITOR COMPLEX
pdb|1PL6|C Chain C, Human SdhNADHINHIBITOR COMPLEX
pdb|1PL6|D Chain D, Human SdhNADHINHIBITOR COMPLEX
Length = 356
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 1 MGAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAAR 51
+G +V+ +C G ++ + ATR+G + LVG+G TVPL AA R
Sbjct: 239 LGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEXTTVPLLHAAIR 289
>pdb|1PL7|A Chain A, Human Sorbitol Dehydrogenase (Apo)
pdb|1PL7|B Chain B, Human Sorbitol Dehydrogenase (Apo)
pdb|1PL7|C Chain C, Human Sorbitol Dehydrogenase (Apo)
pdb|1PL7|D Chain D, Human Sorbitol Dehydrogenase (Apo)
pdb|1PL8|A Chain A, Human SdhNAD+ COMPLEX
pdb|1PL8|B Chain B, Human SdhNAD+ COMPLEX
pdb|1PL8|C Chain C, Human SdhNAD+ COMPLEX
pdb|1PL8|D Chain D, Human SdhNAD+ COMPLEX
Length = 356
Score = 39.7 bits (91), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 1 MGAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAAR 51
+G +V+ +C G ++ + ATR+G + LVG+G TVPL AA R
Sbjct: 239 LGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIR 289
>pdb|3QE3|A Chain A, Sheep Liver Sorbitol Dehydrogenase
Length = 355
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 1 MGAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAAR 51
+G+ +V+ +C G+ ++ + AT +G + LVG+G +VPL AA R
Sbjct: 238 LGSKPEVTIECTGVETSIQAGIYATHSGGTLVLVGLGSEMTSVPLVHAATR 288
>pdb|1E3L|A Chain A, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase
Complex With Nadh
pdb|1E3L|B Chain B, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase
Complex With Nadh
Length = 376
Score = 35.0 bits (79), Expect = 0.011, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVC-LVGMGHHDMTVP 44
G+D S DCAG +T+ +D T G C +VG +MT+P
Sbjct: 263 AGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMTIP 306
>pdb|1E3E|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh
pdb|1E3E|B Chain B, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh
pdb|1E3I|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh And
Inhibitor
pdb|1E3I|B Chain B, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh And
Inhibitor
Length = 376
Score = 35.0 bits (79), Expect = 0.011, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVC-LVGMGHHDMTVP 44
G+D S DCAG +T+ +D T G C +VG +MT+P
Sbjct: 263 AGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMTIP 306
>pdb|3M6I|A Chain A, L-Arabinitol 4-Dehydrogenase
pdb|3M6I|B Chain B, L-Arabinitol 4-Dehydrogenase
Length = 363
Score = 34.3 bits (77), Expect = 0.018, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 28/45 (62%)
Query: 7 VSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAAR 51
V+ +C G+ +++ + A + G KV ++G+G +++ +P A+ R
Sbjct: 255 VALECTGVESSIAAAIWAVKFGGKVFVIGVGKNEIQIPFMRASVR 299
>pdb|3COS|A Chain A, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase
(Adh4) In Complex With Nad And Zn
pdb|3COS|B Chain B, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase
(Adh4) In Complex With Nad And Zn
pdb|3COS|C Chain C, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase
(Adh4) In Complex With Nad And Zn
pdb|3COS|D Chain D, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase
(Adh4) In Complex With Nad And Zn
Length = 381
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCL---VGMGHHDMTV 43
G+D + DCAG ++TM LD T AG C V G +TV
Sbjct: 267 GGVDFALDCAGGSETMKAALDCTTAGWGSCTFIGVAAGSKGLTV 310
>pdb|4EJ6|A Chain A, Crystal Structure Of A Putative Zinc-Binding Dehydrogenase
(Target Psi-012003) From Sinorhizobium Meliloti 1021
pdb|4EJM|A Chain A, Crystal Structure Of A Putative Zinc-Binding Dehydrogenase
(Target Psi-012003) From Sinorhizobium Meliloti 1021
Bound To Nadp
Length = 370
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTP 47
G+DV +CAG+ +T+ +AG V ++G+ V + P
Sbjct: 252 GGVDVVIECAGVAETVKQSTRLAKAGGTVVILGVLPQGEKVEIEP 296
>pdb|3GFB|A Chain A, L-Threonine Dehydrogenase (Tktdh) From The
Hyperthermophilic Archaeon Thermococcus Kodakaraensis
pdb|3GFB|B Chain B, L-Threonine Dehydrogenase (Tktdh) From The
Hyperthermophilic Archaeon Thermococcus Kodakaraensis
pdb|3GFB|C Chain C, L-Threonine Dehydrogenase (Tktdh) From The
Hyperthermophilic Archaeon Thermococcus Kodakaraensis
pdb|3GFB|D Chain D, L-Threonine Dehydrogenase (Tktdh) From The
Hyperthermophilic Archaeon Thermococcus Kodakaraensis
Length = 350
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTV 43
GAG++V + +G K + L A G +V L+G+ ++T+
Sbjct: 234 GAGVEVFLEFSGAPKALEQGLKAVTPGGRVSLLGLFPREVTI 275
>pdb|2O97|B Chain B, Crystal Structure Of E. Coli Hu Heterodimer
Length = 90
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 1 MGAGIDVSFDCAG--LNKTMSTVLDATRAGDKVCLVGMG 37
+ AG D+S AG L+ +++V ++ + GD V LVG G
Sbjct: 10 IAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFG 48
>pdb|3GU9|A Chain A, R228a Mutation In Organophosphorus Hydrolase From
Deinococcu Radiodurans
Length = 331
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD 40
G+ ++FD GL + T DA R L+G G+ D
Sbjct: 229 GVSIAFDAIGLQGMVGTPTDAERLSVLTTLLGEGYAD 265
>pdb|1P51|A Chain A, Anabaena Hu-Dna Cocrystal Structure (Ahu6)
pdb|1P51|B Chain B, Anabaena Hu-Dna Cocrystal Structure (Ahu6)
pdb|1P51|C Chain C, Anabaena Hu-Dna Cocrystal Structure (Ahu6)
pdb|1P51|D Chain D, Anabaena Hu-Dna Cocrystal Structure (Ahu6)
pdb|1P71|A Chain A, Anabaena Hu-Dna Corcrystal Structure (Tr3)
pdb|1P71|B Chain B, Anabaena Hu-Dna Corcrystal Structure (Tr3)
pdb|1P78|A Chain A, Anabaena Hu-Dna Cocrystal Structure (Ahu2)
pdb|1P78|B Chain B, Anabaena Hu-Dna Cocrystal Structure (Ahu2)
Length = 94
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 14 LNKTMSTVLDATRAGDKVCLVGMGHHD 40
L + T+++A +GDKV LVG G +
Sbjct: 25 LTAALETIIEAVSSGDKVTLVGFGSFE 51
>pdb|1P0C|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Vertebrate
Alcohol Dehydrogenase (Adh8)
pdb|1P0C|B Chain B, Crystal Structure Of The Nadp(H)-Dependent Vertebrate
Alcohol Dehydrogenase (Adh8)
pdb|1P0F|A Chain A, Crystal Structure Of The Binary Complex: Nadp(H)-Dependent
Vertebrate Alcohol Dehydrogenase (Adh8) With The
Cofactor Nadp
pdb|1P0F|B Chain B, Crystal Structure Of The Binary Complex: Nadp(H)-Dependent
Vertebrate Alcohol Dehydrogenase (Adh8) With The
Cofactor Nadp
Length = 373
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLV 34
G+D + +CAG +TM L +T G V +V
Sbjct: 260 GGVDYAVECAGRIETMMNALQSTYCGSGVTVV 291
>pdb|3GTF|A Chain A, D71gE101GV235L MUTANT IN ORGANOPHOSPHORUS HYDROLASE FROM D
Radiodurans
Length = 337
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD 40
G+ ++FD GL + T DA R L+G G+ D
Sbjct: 235 GVSIAFDRIGLQGMLGTPTDAERLSVLTTLLGEGYAD 271
>pdb|1TEH|A Chain A, Structure Of Human Liver Chichi Alcohol Dehydrogenase (A
Glutathione- Dependent Formaldehyde Dehydrogenase)
pdb|1TEH|B Chain B, Structure Of Human Liver Chichi Alcohol Dehydrogenase (A
Glutathione- Dependent Formaldehyde Dehydrogenase)
pdb|1M6H|A Chain A, Human Glutathione-Dependent Formaldehyde Dehydrogenase
pdb|1M6H|B Chain B, Human Glutathione-Dependent Formaldehyde Dehydrogenase
pdb|1M6W|A Chain A, Binary Complex Of Human Glutathione-Dependent Formaldehyde
Dehydrogenase And 12-Hydroxydodecanoic Acid
pdb|1M6W|B Chain B, Binary Complex Of Human Glutathione-Dependent Formaldehyde
Dehydrogenase And 12-Hydroxydodecanoic Acid
pdb|1MA0|A Chain A, Ternary Complex Of Human Glutathione-Dependent
Formaldehyde Dehydrogenase With Nad+ And Dodecanoic Acid
pdb|1MA0|B Chain B, Ternary Complex Of Human Glutathione-Dependent
Formaldehyde Dehydrogenase With Nad+ And Dodecanoic Acid
pdb|1MP0|A Chain A, Binary Complex Of Human Glutathione-Dependent Formaldehyde
Dehydrogenase With Nad(H)
pdb|1MP0|B Chain B, Binary Complex Of Human Glutathione-Dependent Formaldehyde
Dehydrogenase With Nad(H)
pdb|2FZE|A Chain A, Crystal Structure Of The Binary Complex Of Human
Glutathione-Dependent Formaldehyde Dehydrogenase With
Adp- Ribose
pdb|2FZE|B Chain B, Crystal Structure Of The Binary Complex Of Human
Glutathione-Dependent Formaldehyde Dehydrogenase With
Adp- Ribose
Length = 373
Score = 26.6 bits (57), Expect = 3.3, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 3 AGIDVSFDCAGLNKTMSTVLDATRAG 28
G+D SF+C G K M L+A G
Sbjct: 259 GGVDYSFECIGNVKVMRAALEACHKG 284
>pdb|3QJ5|A Chain A, S-Nitrosoglutathione Reductase (Gsnor) In Complex With
N6022
pdb|3QJ5|B Chain B, S-Nitrosoglutathione Reductase (Gsnor) In Complex With
N6022
Length = 374
Score = 26.6 bits (57), Expect = 3.3, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 3 AGIDVSFDCAGLNKTMSTVLDATRAG 28
G+D SF+C G K M L+A G
Sbjct: 260 GGVDYSFECIGNVKVMRAALEACHKG 285
>pdb|1MC5|A Chain A, Ternary Complex Of Human Glutathione-Dependent
Formaldehyde Dehydrogenase With
S-(Hydroxymethyl)glutathione And Nadh
pdb|1MC5|B Chain B, Ternary Complex Of Human Glutathione-Dependent
Formaldehyde Dehydrogenase With
S-(Hydroxymethyl)glutathione And Nadh
Length = 374
Score = 26.6 bits (57), Expect = 3.3, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 3 AGIDVSFDCAGLNKTMSTVLDATRAG 28
G+D SF+C G K M L+A G
Sbjct: 260 GGVDYSFECIGNVKVMRAALEACHKG 285
>pdb|2FZW|A Chain A, Structure Of The Binary Complex Of The E67l Mutant Of
Human Glutathione-Dependent Formaldehyde Dehydrogenase
With Nad(H)
pdb|2FZW|B Chain B, Structure Of The Binary Complex Of The E67l Mutant Of
Human Glutathione-Dependent Formaldehyde Dehydrogenase
With Nad(H)
Length = 373
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 3 AGIDVSFDCAGLNKTMSTVLDATRAG 28
G+D SF+C G K M L+A G
Sbjct: 259 GGVDYSFECIGNVKVMRAALEACHKG 284
>pdb|3GU1|A Chain A, Y97w Mutant In Organophosphorus Hydrolase From Deinococcus
Radiodurans
Length = 337
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD 40
G+ ++FD GL + T DA R L+G G+ D
Sbjct: 235 GVSIAFDRIGLQGMVGTPTDAERLSVLTTLLGEGYAD 271
>pdb|3HTW|A Chain A, Organophosphorus Hydrolase From Deinococcus Radiodurans
With Cacodylate Bound
Length = 328
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD 40
G+ ++FD GL + T DA R L+G G+ D
Sbjct: 226 GVSIAFDRIGLQGMVGTPTDAERLSVLTTLLGEGYAD 262
>pdb|3GU2|A Chain A, Y97lG100-E101- Mutant In Organophosphorus Hydrolase
Length = 336
Score = 26.2 bits (56), Expect = 4.3, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD 40
G+ ++FD GL + T DA R L+G G+ D
Sbjct: 234 GVSIAFDRIGLQGMVGTPTDAERLSVLTTLLGEGYAD 270
>pdb|3FDK|A Chain A, Crystal Structure Of Hydrolase Dr0930 With Promiscuous
Catalytic Activity
Length = 323
Score = 26.2 bits (56), Expect = 4.3, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD 40
G+ ++FD GL + T DA R L+G G+ D
Sbjct: 221 GVSIAFDRIGLQGMVGTPTDAERLSVLTTLLGEGYAD 257
>pdb|2ZC1|A Chain A, Organophosphorus Hydrolase From Deinococcus Radiodurans
Length = 333
Score = 26.2 bits (56), Expect = 4.3, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD 40
G+ ++FD GL + T DA R L+G G+ D
Sbjct: 231 GVSIAFDRIGLQGMVGTPTDAERLSVLTTLLGEGYAD 267
>pdb|3GTX|A Chain A, D71gE101G MUTANT IN ORGANOPHOSPHORUS HYDROLASE FROM
DEINOCO Radiodurans
Length = 339
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD 40
G+ ++FD GL + T DA R L+G G+ D
Sbjct: 237 GVSIAFDRIGLQGMVGTPTDAERLSVLTTLLGEGYAD 273
>pdb|3GTH|A Chain A, D71gE101GM234I MUTANT IN ORGANOPHOSPHORUS HYDROLASE FROM D
Radiodurans
Length = 337
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD 40
G+ ++FD GL + T DA R L+G G+ D
Sbjct: 235 GVSIAFDRIGLQGIVGTPTDAERLSVLTTLLGEGYAD 271
>pdb|3GTI|A Chain A, D71gE101GM234L MUTANT IN ORGANOPHOSPHORUS HYDROLASE FROM D
Radiodurans
Length = 337
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD 40
G+ ++FD GL + T DA R L+G G+ D
Sbjct: 235 GVSIAFDRIGLQGLVGTPTDAERLSVLTTLLGEGYAD 271
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.144 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,756,500
Number of Sequences: 62578
Number of extensions: 89946
Number of successful extensions: 229
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 199
Number of HSP's gapped (non-prelim): 31
length of query: 100
length of database: 14,973,337
effective HSP length: 66
effective length of query: 34
effective length of database: 10,843,189
effective search space: 368668426
effective search space used: 368668426
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)