BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034261
(100 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EQK|A Chain A, Solution Structure Of Oryzacystatin-I, A Cysteine
Proteinase Inhibitor Of The Rice, Oryza Sativa L.
Japonica
Length = 102
Score = 95.5 bits (236), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 50/94 (53%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 2 ATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLE 61
+GGV V N+ +V+LARFAV EHNKK NS L+F GTLY T+E
Sbjct: 7 PVLGGVEPV-GNENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTIE 65
Query: 62 AVEGGQKKLFEAKVWEKPWMQFKELKEFNTVAQS 95
EG KKL+EAKVWEKPWM FKEL+EF V S
Sbjct: 66 VKEGDAKKLYEAKVWEKPWMDFKELQEFKPVDAS 99
>pdb|3IMA|B Chain B, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|D Chain D, Complex Strcuture Of Tarocystatin And Papain
Length = 91
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 61/91 (67%)
Query: 2 ATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLE 61
A +GG+ +VE N+ E+ LARFAVDEHNKK+N+ LQF G ++ +T+E
Sbjct: 1 ALMGGIVDVEGAQNSAEVEELARFAVDEHNKKENALLQFSRLVKAKQQVVSGIMHHLTVE 60
Query: 62 AVEGGQKKLFEAKVWEKPWMQFKELKEFNTV 92
+EGG+KK++EAKVW + W+ K+L EF+ +
Sbjct: 61 VIEGGKKKVYEAKVWVQAWLNSKKLHEFSPI 91
>pdb|3UL5|A Chain A, Saccharum Officinarum Canecystatin-1 In Space Group C2221
pdb|3UL5|B Chain B, Saccharum Officinarum Canecystatin-1 In Space Group C2221
pdb|3UL5|C Chain C, Saccharum Officinarum Canecystatin-1 In Space Group C2221
pdb|3UL5|D Chain D, Saccharum Officinarum Canecystatin-1 In Space Group C2221
pdb|3UL6|A Chain A, Saccharum Officinarum Canecystatin-1 In Space Group P6422
pdb|3UL6|B Chain B, Saccharum Officinarum Canecystatin-1 In Space Group P6422
Length = 139
Score = 75.5 bits (184), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 56/97 (57%), Gaps = 2/97 (2%)
Query: 1 MATVGGVREVEATA-NNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDIT 59
+ VG VR+ A N+ E + LARFAV EHN K N+ L+F GT++ T
Sbjct: 43 VGMVGDVRDAPAGHENDLEAIELARFAVAEHNSKTNAMLEFERLVKVRHQVVAGTMHHFT 102
Query: 60 LEAVE-GGQKKLFEAKVWEKPWMQFKELKEFNTVAQS 95
++ E GG KKL+EAKVWEK W FK+L+ F V +
Sbjct: 103 VQVKEAGGGKKLYEAKVWEKVWENFKQLQSFQPVGDA 139
>pdb|2L4V|A Chain A, Three Dimensional Structure Of Pineapple Cystatin
Length = 135
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 58/97 (59%), Gaps = 5/97 (5%)
Query: 2 ATVGGVREVEATANNQ---EIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDI 58
+GG+ +A NN+ + +LARFAV E+N K N+ L+F G ++ +
Sbjct: 41 PIMGGI--YDAPLNNENGFDKEDLARFAVREYNNKNNALLEFVRVVKAKEQVVSGMMHYL 98
Query: 59 TLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNTVAQS 95
T+E + G+KKL+EAKVWE+ WM F++L+EF + +
Sbjct: 99 TVEVNDAGKKKLYEAKVWEQVWMNFRQLQEFTYLGDA 135
>pdb|2W9P|A Chain A, Crystal Structure Of Potato Multicystatin
pdb|2W9P|B Chain B, Crystal Structure Of Potato Multicystatin
pdb|2W9P|C Chain C, Crystal Structure Of Potato Multicystatin
pdb|2W9P|D Chain D, Crystal Structure Of Potato Multicystatin
pdb|2W9P|E Chain E, Crystal Structure Of Potato Multicystatin
pdb|2W9P|F Chain F, Crystal Structure Of Potato Multicystatin
pdb|2W9P|G Chain G, Crystal Structure Of Potato Multicystatin
pdb|2W9P|H Chain H, Crystal Structure Of Potato Multicystatin
pdb|2W9P|I Chain I, Crystal Structure Of Potato Multicystatin
pdb|2W9P|J Chain J, Crystal Structure Of Potato Multicystatin
pdb|2W9P|K Chain K, Crystal Structure Of Potato Multicystatin
pdb|2W9P|L Chain L, Crystal Structure Of Potato Multicystatin
pdb|2W9P|M Chain M, Crystal Structure Of Potato Multicystatin
pdb|2W9P|N Chain N, Crystal Structure Of Potato Multicystatin
pdb|2W9Q|A Chain A, Crystal Structure Of Potato Multicystatin-P212121
Length = 87
Score = 65.1 bits (157), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 15 NNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAV-EGGQKKLFEA 73
NN + LARFA+ ++NKKQN++L+F G +Y ITL A + G+KK+++A
Sbjct: 9 NNTKFQELARFAIQDYNKKQNAHLEFVENLNVKEQVVAGIMYYITLAATDDAGKKKIYKA 68
Query: 74 KVWEKPWMQFKELKEFNTV 92
K+W K W FK++ EF V
Sbjct: 69 KIWVKEWEDFKKVVEFKLV 87
>pdb|3QO5|A Chain A, Crystal Structure Of The Seryl-Trna Synthetase From
Candida Albicans
Length = 485
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 11 EATANNQEIVNLARFAVDEHNKKQNS 36
E A +E V L RF +DEHNKK NS
Sbjct: 34 EIIAEYKEWVKL-RFDLDEHNKKLNS 58
>pdb|3QNE|A Chain A, Candida Albicans Seryl-Trna Synthetase
pdb|3QO7|A Chain A, Crystal Structure Of The Seryl-Trna Synthetase From
Candida Albicans
pdb|3QO8|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Candida
Albicans
Length = 485
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 11 EATANNQEIVNLARFAVDEHNKKQNS 36
E A +E V L RF +DEHNKK NS
Sbjct: 34 EIIAEYKEWVKL-RFDLDEHNKKLNS 58
>pdb|4EU8|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-S71a) In
Complex With Coa
pdb|4EU8|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6-S71a) In
Complex With Coa
Length = 514
Score = 25.4 bits (54), Expect = 7.4, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 5 GGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQ 39
GG+ + N+Q +NLA + E N+ QN L+
Sbjct: 143 GGIVPTSSVGNSQTFLNLAEKVIIEVNEWQNPMLE 177
>pdb|4EUB|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-E294a) In
Complex With Coa
pdb|4EUB|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6-E294a) In
Complex With Coa
pdb|4EUC|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-E294a) In
Complex With Dethiaacetyl-Coa
pdb|4EUC|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6-E294a) In
Complex With Dethiaacetyl-Coa
Length = 514
Score = 25.4 bits (54), Expect = 7.4, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 5 GGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQ 39
GG+ + N+Q +NLA + E N+ QN L+
Sbjct: 143 GGIVPTSSVGNSQTFLNLAEKVIIEVNEWQNPMLE 177
>pdb|4EU3|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Citrate (Subunit B) Or Unliganded (Subunit A)
pdb|4EU3|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Citrate (Subunit B) Or Unliganded (Subunit A)
pdb|4EU4|A Chain A, Succinyl-Coa: Acetate Coa-Transferase (Aarch6) In Complex
With Coa (Hexagonal Lattice)
pdb|4EU4|B Chain B, Succinyl-Coa: Acetate Coa-Transferase (Aarch6) In Complex
With Coa (Hexagonal Lattice)
pdb|4EU5|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa
pdb|4EU5|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa
pdb|4EU6|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa, Acetate, And Covalent Acetylglutamyl Anhydride
And Glutamyl-Coa Thioester Adducts
pdb|4EU6|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa, Acetate, And Covalent Acetylglutamyl Anhydride
And Glutamyl-Coa Thioester Adducts
pdb|4EU7|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa And Citrate
pdb|4EU7|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa And Citrate
Length = 514
Score = 25.4 bits (54), Expect = 7.4, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 5 GGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQ 39
GG+ + N+Q +NLA + E N+ QN L+
Sbjct: 143 GGIVPTSSVGNSQTFLNLAEKVIIEVNEWQNPMLE 177
>pdb|4EUD|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarc) In Complex
With Coa And Citrate
pdb|4EUD|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarc) In Complex
With Coa And Citrate
Length = 505
Score = 25.4 bits (54), Expect = 7.4, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 5 GGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQ 39
GG+ + N+Q +NLA + E N+ QN L+
Sbjct: 143 GGIVPTSSVGNSQTFLNLAEKVIIEVNEWQNPMLE 177
>pdb|4EU9|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-R228e) In
Complex With Coa And A Covalent Glutamyl-Coa Thioester
Adduct
pdb|4EU9|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6-R228e) In
Complex With Coa And A Covalent Glutamyl-Coa Thioester
Adduct
pdb|4EUA|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-R228e) In
Complex With Coa (Anomalous Dataset)
pdb|4EUA|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6-R228e) In
Complex With Coa (Anomalous Dataset)
Length = 514
Score = 25.4 bits (54), Expect = 7.9, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 5 GGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQ 39
GG+ + N+Q +NLA + E N+ QN L+
Sbjct: 143 GGIVPTSSVGNSQTFLNLAEKVIIEVNEWQNPMLE 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.125 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,327,116
Number of Sequences: 62578
Number of extensions: 59572
Number of successful extensions: 92
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 79
Number of HSP's gapped (non-prelim): 13
length of query: 100
length of database: 14,973,337
effective HSP length: 66
effective length of query: 34
effective length of database: 10,843,189
effective search space: 368668426
effective search space used: 368668426
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)