Query 034263
Match_columns 100
No_of_seqs 103 out of 1104
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 11:34:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034263.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034263hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 1.2E-34 2.6E-39 192.2 9.1 80 7-90 2-81 (148)
2 COG5078 Ubiquitin-protein liga 100.0 4.8E-34 1E-38 192.0 11.7 87 1-92 1-87 (153)
3 KOG0419 Ubiquitin-protein liga 100.0 6.4E-32 1.4E-36 176.0 9.4 84 1-90 1-84 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 6.4E-31 1.4E-35 177.2 11.4 80 7-90 3-82 (152)
5 PLN00172 ubiquitin conjugating 100.0 2E-30 4.3E-35 173.9 10.9 80 7-90 2-81 (147)
6 KOG0418 Ubiquitin-protein liga 100.0 2E-29 4.2E-34 172.5 9.2 86 1-93 1-89 (200)
7 KOG0425 Ubiquitin-protein liga 100.0 2E-28 4.3E-33 163.5 9.6 86 1-90 1-86 (171)
8 PF00179 UQ_con: Ubiquitin-con 100.0 4.9E-28 1.1E-32 160.3 9.3 80 10-93 1-80 (140)
9 KOG0426 Ubiquitin-protein liga 100.0 5.6E-28 1.2E-32 157.9 8.8 86 1-91 1-86 (165)
10 cd00195 UBCc Ubiquitin-conjuga 99.9 6.7E-27 1.5E-31 155.1 10.9 80 9-93 2-81 (141)
11 KOG0424 Ubiquitin-protein liga 99.9 5.5E-27 1.2E-31 154.7 9.6 89 1-91 1-90 (158)
12 KOG0421 Ubiquitin-protein liga 99.9 2.9E-26 6.3E-31 151.6 9.8 82 5-90 28-109 (175)
13 KOG0422 Ubiquitin-protein liga 99.9 2.4E-26 5.1E-31 151.0 7.3 80 7-90 3-82 (153)
14 smart00212 UBCc Ubiquitin-conj 99.9 1.1E-25 2.3E-30 150.0 9.9 81 9-93 1-81 (145)
15 KOG0416 Ubiquitin-protein liga 99.9 5.1E-24 1.1E-28 144.1 7.8 81 6-93 3-83 (189)
16 KOG0894 Ubiquitin-protein liga 99.9 2.3E-23 5E-28 145.5 8.7 76 1-81 1-76 (244)
17 KOG0427 Ubiquitin conjugating 99.9 2.2E-21 4.8E-26 126.8 8.7 82 5-91 14-96 (161)
18 KOG0423 Ubiquitin-protein liga 99.8 1.1E-20 2.4E-25 128.5 4.5 81 6-90 10-90 (223)
19 KOG0420 Ubiquitin-protein liga 99.8 8.5E-20 1.8E-24 123.7 7.7 82 5-90 27-109 (184)
20 KOG0428 Non-canonical ubiquiti 99.8 3.9E-19 8.4E-24 126.7 7.2 72 5-81 10-81 (314)
21 KOG0429 Ubiquitin-conjugating 99.5 4.7E-13 1E-17 94.3 8.9 80 10-94 23-104 (258)
22 KOG0896 Ubiquitin-conjugating 99.4 5.5E-13 1.2E-17 87.4 6.6 88 9-96 8-95 (138)
23 KOG0895 Ubiquitin-conjugating 99.2 8.6E-11 1.9E-15 96.9 8.2 81 6-90 282-365 (1101)
24 KOG0895 Ubiquitin-conjugating 99.2 4.1E-11 8.9E-16 98.7 5.1 77 10-90 855-933 (1101)
25 PF05773 RWD: RWD domain; Int 96.9 0.0061 1.3E-07 37.8 6.7 70 8-82 3-74 (113)
26 smart00591 RWD domain in RING 96.3 0.046 1E-06 33.5 7.8 41 41-81 24-65 (107)
27 PF14461 Prok-E2_B: Prokaryoti 96.0 0.013 2.9E-07 38.3 4.1 35 55-89 34-71 (133)
28 PF08694 UFC1: Ubiquitin-fold 94.5 0.015 3.3E-07 39.0 0.9 63 6-77 24-95 (161)
29 PF05743 UEV: UEV domain; Int 93.9 0.41 8.9E-06 31.0 6.6 41 52-93 41-88 (121)
30 KOG0897 Predicted ubiquitin-co 91.8 0.11 2.4E-06 33.6 1.6 22 60-81 14-35 (122)
31 KOG3357 Uncharacterized conser 90.7 0.37 8E-06 32.0 3.3 62 6-77 27-98 (167)
32 KOG0309 Conserved WD40 repeat- 90.4 1.7 3.7E-05 36.6 7.5 68 8-81 422-491 (1081)
33 PF14462 Prok-E2_E: Prokaryoti 88.6 2.4 5.1E-05 27.7 5.8 51 25-80 13-65 (122)
34 PF14457 Prok-E2_A: Prokaryoti 85.4 0.99 2.1E-05 30.8 2.9 40 60-100 56-98 (162)
35 KOG2391 Vacuolar sorting prote 84.0 3 6.5E-05 31.9 5.1 58 28-90 41-106 (365)
36 KOG4018 Uncharacterized conser 83.2 6.6 0.00014 28.1 6.3 36 40-76 31-68 (215)
37 PF09765 WD-3: WD-repeat regio 78.8 6 0.00013 29.4 5.1 58 7-77 100-157 (291)
38 smart00340 HALZ homeobox assoc 74.9 3.1 6.8E-05 22.2 2.0 15 7-21 20-34 (44)
39 cd00421 intradiol_dioxygenase 70.7 8.3 0.00018 25.5 3.8 25 56-80 65-90 (146)
40 cd03457 intradiol_dioxygenase_ 65.5 12 0.00025 26.1 3.8 26 56-81 86-111 (188)
41 cd03459 3,4-PCD Protocatechuat 62.2 15 0.00033 24.8 3.8 25 56-80 72-101 (158)
42 PF14135 DUF4302: Domain of un 58.3 40 0.00087 23.9 5.6 74 5-93 8-105 (235)
43 KOG3696 Aspartyl beta-hydroxyl 57.0 31 0.00067 26.2 4.9 38 53-90 283-326 (334)
44 TIGR02423 protocat_alph protoc 52.1 26 0.00055 24.5 3.7 25 56-80 96-125 (193)
45 KOG4445 Uncharacterized conser 51.4 22 0.00048 27.0 3.4 25 57-81 45-69 (368)
46 cd03463 3,4-PCD_alpha Protocat 48.2 33 0.00071 23.8 3.7 24 57-80 93-121 (185)
47 COG1343 CRISPR-associated prot 46.6 68 0.0015 19.7 4.6 44 5-53 41-84 (89)
48 PF06113 BRE: Brain and reprod 45.5 33 0.00072 26.2 3.6 23 58-80 307-329 (333)
49 PF06113 BRE: Brain and reprod 41.9 49 0.0011 25.3 4.0 42 39-86 53-95 (333)
50 KOG3285 Spindle assembly check 41.9 74 0.0016 22.4 4.6 43 5-51 118-160 (203)
51 COG3866 PelB Pectate lyase [Ca 40.7 55 0.0012 25.0 4.1 42 40-82 197-242 (345)
52 PF14455 Metal_CEHH: Predicted 40.1 38 0.00082 23.3 2.9 38 42-81 39-76 (177)
53 TIGR01633 phi3626_gp14_N putat 39.8 90 0.002 19.2 6.1 57 7-68 63-121 (124)
54 PF12065 DUF3545: Protein of u 38.5 25 0.00054 20.1 1.6 13 8-20 36-48 (59)
55 PF00845 Gemini_BL1: Geminivir 36.4 99 0.0022 22.8 4.7 28 57-84 123-155 (276)
56 cd03464 3,4-PCD_beta Protocate 35.4 66 0.0014 23.0 3.7 25 56-80 122-153 (220)
57 TIGR02439 catechol_proteo cate 34.6 66 0.0014 24.0 3.7 25 56-80 180-222 (285)
58 cd03461 1,2-HQD Hydroxyquinol 33.7 70 0.0015 23.7 3.7 25 56-80 172-214 (277)
59 COG2819 Predicted hydrolase of 33.1 80 0.0017 23.3 3.9 30 51-80 15-46 (264)
60 COG0544 Tig FKBP-type peptidyl 32.6 1.3E+02 0.0027 23.8 5.1 16 57-72 209-224 (441)
61 TIGR02422 protocat_beta protoc 32.6 78 0.0017 22.7 3.7 25 56-80 117-148 (220)
62 PF09606 Med15: ARC105 or Med1 32.1 15 0.00033 31.1 0.0 25 59-83 716-740 (799)
63 PF15572 Imm26: Immunity prote 32.0 54 0.0012 20.6 2.4 27 49-80 7-33 (96)
64 TIGR03517 GldM_gliding gliding 31.7 81 0.0018 25.6 4.0 71 7-79 202-272 (523)
65 COG2140 Thermophilic glucose-6 31.2 76 0.0017 22.7 3.4 32 56-89 66-103 (209)
66 TIGR02438 catachol_actin catec 30.9 85 0.0018 23.4 3.7 25 56-80 184-226 (281)
67 PLN02344 chorismate mutase 30.8 20 0.00043 26.7 0.4 13 88-100 157-169 (284)
68 cd03460 1,2-CTD Catechol 1,2 d 30.1 88 0.0019 23.3 3.7 25 56-80 176-218 (282)
69 PF09458 H_lectin: H-type lect 29.8 85 0.0018 17.6 3.0 23 58-81 2-24 (72)
70 PF05709 Sipho_tail: Phage tai 29.7 1.9E+02 0.004 19.8 6.0 60 7-72 53-115 (249)
71 KOG1814 Predicted E3 ubiquitin 28.9 52 0.0011 26.0 2.4 23 60-83 77-100 (445)
72 PF12627 PolyA_pol_RNAbd: Prob 28.7 63 0.0014 17.6 2.2 19 5-23 21-39 (64)
73 PF14824 Sirohm_synth_M: Siroh 27.8 87 0.0019 15.4 2.5 14 5-18 16-29 (30)
74 TIGR02465 chlorocat_1_2 chloro 27.3 1.1E+02 0.0024 22.3 3.8 25 56-80 150-192 (246)
75 PF02970 TBCA: Tubulin binding 25.5 86 0.0019 19.1 2.6 15 6-20 7-21 (90)
76 PF06305 DUF1049: Protein of u 25.4 81 0.0017 17.5 2.3 16 6-21 48-63 (68)
77 PF03487 IL13: Interleukin-13; 24.6 1.2E+02 0.0026 16.0 2.7 17 5-21 26-42 (43)
78 COG4957 Predicted transcriptio 24.5 38 0.00083 22.7 0.9 18 58-75 103-120 (148)
79 PRK05892 nucleoside diphosphat 23.8 91 0.002 21.0 2.7 16 5-20 10-25 (158)
80 COG3470 Tpd Uncharacterized pr 23.4 86 0.0019 21.6 2.4 27 57-93 133-159 (179)
81 KOG3770 Acid sphingomyelinase 23.0 2.5E+02 0.0054 23.2 5.3 44 38-90 109-154 (577)
82 cd03458 Catechol_intradiol_dio 22.8 1.5E+02 0.0032 21.8 3.7 24 57-80 157-198 (256)
83 PF03366 YEATS: YEATS family; 22.6 1.9E+02 0.004 17.4 5.0 40 40-81 2-41 (84)
84 TIGR01462 greA transcription e 22.2 1E+02 0.0022 20.3 2.7 16 5-20 4-19 (151)
85 KOG1047 Bifunctional leukotrie 21.0 1.1E+02 0.0024 25.3 2.9 29 52-81 248-279 (613)
86 COG3140 Uncharacterized protei 21.0 1.8E+02 0.0038 16.5 3.0 23 1-24 28-50 (60)
87 PF15590 Imm15: Immunity prote 20.9 1.8E+02 0.004 17.1 3.2 38 13-57 13-50 (69)
88 PF14347 DUF4399: Domain of un 20.5 1.5E+02 0.0032 18.0 2.9 21 57-77 62-84 (87)
89 PF11819 DUF3338: Domain of un 20.2 54 0.0012 21.9 0.9 12 66-77 70-85 (138)
90 cd03462 1,2-CCD chlorocatechol 20.1 1.8E+02 0.0039 21.2 3.7 25 56-80 151-193 (247)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-34 Score=192.23 Aligned_cols=80 Identities=35% Similarity=0.595 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEEeCCCCCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecccccCC
Q 034263 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKWVETCHYCEAN 86 (100)
Q Consensus 7 a~~RL~~El~~l~~~~~~~~~~~~~~~~g~~~l~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 86 (100)
|.+||.||+++|+++++++|++.+.++ |+++|+++|.||.+||||||+|++.|.||++||++||+|+|.|+|||||
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~d----nl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPN 77 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGD----NLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPN 77 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCC----ceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCC
Confidence 467999999999999999999998887 9999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 034263 87 FSGH 90 (100)
Q Consensus 87 v~~~ 90 (100)
|+..
T Consensus 78 I~~~ 81 (148)
T KOG0417|consen 78 IDSN 81 (148)
T ss_pred cCcc
Confidence 9954
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-34 Score=191.99 Aligned_cols=87 Identities=46% Similarity=0.661 Sum_probs=81.3
Q ss_pred CCchhHHHHHHHHHHHHHHHcCCCCeEEEeCCCCCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEec
Q 034263 1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKWVETC 80 (100)
Q Consensus 1 Ms~~~~a~~RL~~El~~l~~~~~~~~~~~~~~~~g~~~l~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (100)
|++ ..|.+||++|+++|++++++++++.+.+++ |+++|+++|.||++||||||+|++.|.||++||++||+|+|++
T Consensus 1 ~~s-~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~---~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t 76 (153)
T COG5078 1 MSS-PSALKRLLKELKKLQKDPPPGISAGPVDDD---NLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTT 76 (153)
T ss_pred CCc-hhHHHHHHHHHHHHhcCCCCceEEEECCCC---cceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecc
Confidence 442 349999999999999999999999999886 9999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCC
Q 034263 81 HYCEANFSGHSG 92 (100)
Q Consensus 81 ~i~HPnv~~~~g 92 (100)
+||||||+ .+|
T Consensus 77 ~i~HPNV~-~~G 87 (153)
T COG5078 77 KIFHPNVD-PSG 87 (153)
T ss_pred CCcCCCcC-CCC
Confidence 99999999 545
No 3
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.4e-32 Score=176.01 Aligned_cols=84 Identities=38% Similarity=0.621 Sum_probs=82.4
Q ss_pred CCchhHHHHHHHHHHHHHHHcCCCCeEEEeCCCCCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEec
Q 034263 1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKWVETC 80 (100)
Q Consensus 1 Ms~~~~a~~RL~~El~~l~~~~~~~~~~~~~~~~g~~~l~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (100)
|| ..|.+||++|+++|+++++.|+++.|.++ |++.|.+.|+||.+|||+||+|+|.|+|.++||.+||.|+|++
T Consensus 1 Ms--tpArrrLmrDfkrlqedpp~gisa~P~~~----niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs 74 (152)
T KOG0419|consen 1 MS--TPARRRLMRDFKRLQEDPPAGISAAPVEN----NIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVS 74 (152)
T ss_pred CC--chHHHHHHHHHHHhhcCCCCCccCCCCcc----ceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeee
Confidence 78 78999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCC
Q 034263 81 HYCEANFSGH 90 (100)
Q Consensus 81 ~i~HPnv~~~ 90 (100)
..|||||+.+
T Consensus 75 ~mFHPNvya~ 84 (152)
T KOG0419|consen 75 KMFHPNVYAD 84 (152)
T ss_pred eccCCCcCCC
Confidence 9999999988
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=99.97 E-value=6.4e-31 Score=177.19 Aligned_cols=80 Identities=29% Similarity=0.578 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEEeCCCCCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecccccCC
Q 034263 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKWVETCHYCEAN 86 (100)
Q Consensus 7 a~~RL~~El~~l~~~~~~~~~~~~~~~~g~~~l~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 86 (100)
+.|||++|+++|.+++++++.+.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~----d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPN 78 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPG----NYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPN 78 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCC----CccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeece
Confidence 689999999999999999999998877 9999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 034263 87 FSGH 90 (100)
Q Consensus 87 v~~~ 90 (100)
|+..
T Consensus 79 V~~~ 82 (152)
T PTZ00390 79 IDKL 82 (152)
T ss_pred ECCC
Confidence 9874
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=99.97 E-value=2e-30 Score=173.92 Aligned_cols=80 Identities=34% Similarity=0.580 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEEeCCCCCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecccccCC
Q 034263 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKWVETCHYCEAN 86 (100)
Q Consensus 7 a~~RL~~El~~l~~~~~~~~~~~~~~~~g~~~l~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 86 (100)
|.+||++|+++|++++++++.+.+.++ |+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+|||||
T Consensus 2 a~~Rl~kE~~~l~~~~~~~~~~~~~~~----nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPN 77 (147)
T PLN00172 2 ATKRIQKEHKDLLKDPPSNCSAGPSDE----NLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPN 77 (147)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEEECCC----ChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccce
Confidence 479999999999999999999998877 9999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 034263 87 FSGH 90 (100)
Q Consensus 87 v~~~ 90 (100)
|+..
T Consensus 78 v~~~ 81 (147)
T PLN00172 78 INSN 81 (147)
T ss_pred ECCC
Confidence 9864
No 6
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2e-29 Score=172.54 Aligned_cols=86 Identities=31% Similarity=0.443 Sum_probs=81.8
Q ss_pred CCchhHHHHHHHHHHHHHHHcC---CCCeEEEeCCCCCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEE
Q 034263 1 MSGGGIARGRLTEERKAWRKNH---PHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKWV 77 (100)
Q Consensus 1 Ms~~~~a~~RL~~El~~l~~~~---~~~~~~~~~~~~g~~~l~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~ 77 (100)
|+ . +.+||++|++++..++ ..+|.++..++ |+.+....|.||++||||||.|.++|++|++|||+||+|+
T Consensus 1 m~--~-~~~ri~~e~k~v~~~~eisq~~I~ve~vn~----~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~ 73 (200)
T KOG0418|consen 1 MS--N-AFKRINREQKEVLDDPEISQAGIIVEMVNE----NLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVK 73 (200)
T ss_pred Cc--c-HHHHHHHHHHHhccChhhhhcceEEEEccC----ChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCcee
Confidence 77 6 8999999999999887 78899999888 9999999999999999999999999999999999999999
Q ss_pred EecccccCCCCCCCCC
Q 034263 78 ETCHYCEANFSGHSGF 93 (100)
Q Consensus 78 f~t~i~HPnv~~~~g~ 93 (100)
|.|+||||||++++|.
T Consensus 74 F~TkIwHPnVSs~tGa 89 (200)
T KOG0418|consen 74 FITKIWHPNVSSQTGA 89 (200)
T ss_pred eeeeeecCCCCccccc
Confidence 9999999999999875
No 7
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2e-28 Score=163.55 Aligned_cols=86 Identities=27% Similarity=0.461 Sum_probs=80.6
Q ss_pred CCchhHHHHHHHHHHHHHHHcCCCCeEEEeCCCCCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEec
Q 034263 1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKWVETC 80 (100)
Q Consensus 1 Ms~~~~a~~RL~~El~~l~~~~~~~~~~~~~~~~g~~~l~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (100)
|++ +.+..-|+++|++|++++..++++...+++ |++.|.+.|+||++|+||||.|+..+.||.+||++||+++|++
T Consensus 1 m~~-~~a~~ll~~qlk~L~~~pv~gf~~glvd~~---dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s 76 (171)
T KOG0425|consen 1 MTS-SQASLLLLKQLKELQEEPVEGFSVGLVDDS---DIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTS 76 (171)
T ss_pred Ccc-chhHHHHHHHHHHHhcCCCCccccccccCC---ceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeeh
Confidence 554 447889999999999999999999988875 9999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCC
Q 034263 81 HYCEANFSGH 90 (100)
Q Consensus 81 ~i~HPnv~~~ 90 (100)
++|||||+..
T Consensus 77 ~mwHPNvy~~ 86 (171)
T KOG0425|consen 77 KMWHPNVYED 86 (171)
T ss_pred hhcCCCcCCC
Confidence 9999999987
No 8
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=99.95 E-value=4.9e-28 Score=160.32 Aligned_cols=80 Identities=38% Similarity=0.642 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHcCCCCeEEEeCCCCCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecccccCCCCC
Q 034263 10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKWVETCHYCEANFSG 89 (100)
Q Consensus 10 RL~~El~~l~~~~~~~~~~~~~~~~g~~~l~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~ 89 (100)
||++|+++|+++++.++.+.+.+++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~---~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~- 76 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDD---NLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNID- 76 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTT---ETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB--
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCC---ChheEEEEEeccCccceeccccccccccccccccccccccccccccccccc-
Confidence 8999999999999999999988753 999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 034263 90 HSGF 93 (100)
Q Consensus 90 ~~g~ 93 (100)
.+|.
T Consensus 77 ~~G~ 80 (140)
T PF00179_consen 77 ENGR 80 (140)
T ss_dssp TTSB
T ss_pred cccc
Confidence 4454
No 9
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.6e-28 Score=157.86 Aligned_cols=86 Identities=43% Similarity=0.719 Sum_probs=82.6
Q ss_pred CCchhHHHHHHHHHHHHHHHcCCCCeEEEeCCCCCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEec
Q 034263 1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKWVETC 80 (100)
Q Consensus 1 Ms~~~~a~~RL~~El~~l~~~~~~~~~~~~~~~~g~~~l~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (100)
|+ ..|.|||++|+++|.+++++||.+.|.++| |.+.|.+.|.||++|+|+||+|-.++.||.|||.+||+++|..
T Consensus 1 m~--~~AlkRLm~EykqLt~~~P~GIvAgP~~Ed---nfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc 75 (165)
T KOG0426|consen 1 MA--GTALKRLMAEYKQLTLNPPEGIVAGPINED---NFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTC 75 (165)
T ss_pred Cc--hhHHHHHHHHHHHHccCCCCcceeCCCCcc---ceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeec
Confidence 67 789999999999999999999999999886 9999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCC
Q 034263 81 HYCEANFSGHS 91 (100)
Q Consensus 81 ~i~HPnv~~~~ 91 (100)
.+|||||+..+
T Consensus 76 ~~fHPNiy~dG 86 (165)
T KOG0426|consen 76 EMFHPNIYPDG 86 (165)
T ss_pred ccccCcccCCC
Confidence 99999998773
No 10
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=99.95 E-value=6.7e-27 Score=155.10 Aligned_cols=80 Identities=39% Similarity=0.643 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHcCCCCeEEEeCCCCCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecccccCCCC
Q 034263 9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKWVETCHYCEANFS 88 (100)
Q Consensus 9 ~RL~~El~~l~~~~~~~~~~~~~~~~g~~~l~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 88 (100)
|||++|+++|++.++.++++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.+++|||||+
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~----~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~ 77 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEE----NLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVD 77 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCC----ChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCC
Confidence 7999999999999999999999888 999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 034263 89 GHSGF 93 (100)
Q Consensus 89 ~~~g~ 93 (100)
. +|.
T Consensus 78 ~-~G~ 81 (141)
T cd00195 78 E-NGK 81 (141)
T ss_pred C-CCC
Confidence 4 454
No 11
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.5e-27 Score=154.71 Aligned_cols=89 Identities=56% Similarity=0.995 Sum_probs=84.6
Q ss_pred CCchhHHHHHHHHHHHHHHHcCCCCeEEEeCCC-CCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEe
Q 034263 1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKWVET 79 (100)
Q Consensus 1 Ms~~~~a~~RL~~El~~l~~~~~~~~~~~~~~~-~g~~~l~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~ 79 (100)
|| ..+..||+.|-+.+.++.+-|+++.|..+ ||+.|++.|++.|-|+.+|+||||.|++++.||++||++||+++|.
T Consensus 1 ~s--~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~ 78 (158)
T KOG0424|consen 1 MS--GIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFK 78 (158)
T ss_pred Cc--chHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccC
Confidence 77 67899999999999999999999999765 7899999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCC
Q 034263 80 CHYCEANFSGHS 91 (100)
Q Consensus 80 t~i~HPnv~~~~ 91 (100)
+++|||||+..+
T Consensus 79 ~pl~HPNVypsg 90 (158)
T KOG0424|consen 79 PPLFHPNVYPSG 90 (158)
T ss_pred CCCcCCCcCCCC
Confidence 999999999873
No 12
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.9e-26 Score=151.61 Aligned_cols=82 Identities=29% Similarity=0.402 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHHHHHcCCCCeEEEeCCCCCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccccc
Q 034263 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKWVETCHYCE 84 (100)
Q Consensus 5 ~~a~~RL~~El~~l~~~~~~~~~~~~~~~~g~~~l~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 84 (100)
....|||++||..|.....++|++.|++| |+++|..+|.||.+|+|+|-.|++.+.||.+||++||+|+|+|+.||
T Consensus 28 ~~V~KRLq~ELm~Lmms~~~gISAFP~~d----nlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~H 103 (175)
T KOG0421|consen 28 HSVTKRLQSELMGLMMSNTPGISAFPESD----NLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFH 103 (175)
T ss_pred chHHHHHHHHHHHHHhcCCCCcccCcCcC----ceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccC
Confidence 45789999999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 034263 85 ANFSGH 90 (100)
Q Consensus 85 Pnv~~~ 90 (100)
||||-+
T Consensus 104 PNVD~~ 109 (175)
T KOG0421|consen 104 PNVDLS 109 (175)
T ss_pred CCcccc
Confidence 999876
No 13
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.4e-26 Score=151.04 Aligned_cols=80 Identities=26% Similarity=0.384 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEEeCCCCCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecccccCC
Q 034263 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKWVETCHYCEAN 86 (100)
Q Consensus 7 a~~RL~~El~~l~~~~~~~~~~~~~~~~g~~~l~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 86 (100)
|.+||+|||.+|++++...+.-...+++ |++.|.+.|. |++-||..|.|+++|.||.+|||+||+|.|.|+|||||
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~---nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpN 78 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVDEA---NLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPN 78 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhcccc---cceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCC
Confidence 7899999999999998877655445553 9999999999 99999999999999999999999999999999999999
Q ss_pred CCCC
Q 034263 87 FSGH 90 (100)
Q Consensus 87 v~~~ 90 (100)
||+.
T Consensus 79 VDe~ 82 (153)
T KOG0422|consen 79 VDEK 82 (153)
T ss_pred CCCC
Confidence 9998
No 14
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=99.93 E-value=1.1e-25 Score=149.95 Aligned_cols=81 Identities=42% Similarity=0.635 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHcCCCCeEEEeCCCCCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecccccCCCC
Q 034263 9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKWVETCHYCEANFS 88 (100)
Q Consensus 9 ~RL~~El~~l~~~~~~~~~~~~~~~~g~~~l~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 88 (100)
+||++|++++++.+++++.+.+.+++ |+++|+++|.||++|||+||.|++.|.||++||++||+|+|.++++||||+
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~---~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~ 77 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDED---NLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVD 77 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCC---ChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeEC
Confidence 59999999999999999999887653 999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 034263 89 GHSGF 93 (100)
Q Consensus 89 ~~~g~ 93 (100)
. +|.
T Consensus 78 ~-~G~ 81 (145)
T smart00212 78 S-SGE 81 (145)
T ss_pred C-CCC
Confidence 7 463
No 15
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=5.1e-24 Score=144.11 Aligned_cols=81 Identities=15% Similarity=0.254 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCeEEEeCCCCCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecccccC
Q 034263 6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKWVETCHYCEA 85 (100)
Q Consensus 6 ~a~~RL~~El~~l~~~~~~~~~~~~~~~~g~~~l~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 85 (100)
.+.|||-.|+.+|..+. ..+...++ ++.++.+.+.||.+|||+||+|+++|.+|++||++.|+|.|.++||||
T Consensus 3 ~~~rRid~Dv~KL~~s~---yeV~~ind----~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHP 75 (189)
T KOG0416|consen 3 SGKRRIDTDVMKLLMSD---YEVTIIND----GMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHP 75 (189)
T ss_pred CcccchhhHHHHHHhcC---CeEEEecC----cccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCC
Confidence 36899999999998764 45555666 899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 034263 86 NFSGHSGF 93 (100)
Q Consensus 86 nv~~~~g~ 93 (100)
||+..+|.
T Consensus 76 NIDe~SGs 83 (189)
T KOG0416|consen 76 NIDEASGS 83 (189)
T ss_pred CchhccCc
Confidence 99999775
No 16
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.3e-23 Score=145.46 Aligned_cols=76 Identities=32% Similarity=0.556 Sum_probs=72.8
Q ss_pred CCchhHHHHHHHHHHHHHHHcCCCCeEEEeCCCCCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEec
Q 034263 1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKWVETC 80 (100)
Q Consensus 1 Ms~~~~a~~RL~~El~~l~~~~~~~~~~~~~~~~g~~~l~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (100)
|++ ..|.|||+||++.|.++|.+.|.+.|..+ |+.+|+.+|.||++|||+||.|+..|.||.+||++||.|+++|
T Consensus 1 ma~-k~a~kRl~keY~~l~k~Pv~~i~A~P~p~----nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiT 75 (244)
T KOG0894|consen 1 MAS-KAAVKRLQKEYRALCKDPVPYIVARPNPN----NILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMIT 75 (244)
T ss_pred Ccc-hHHHHHHHHHHHHHHhCCchhhccCCCcc----ceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEEC
Confidence 664 68999999999999999999999999998 9999999999999999999999999999999999999999998
Q ss_pred c
Q 034263 81 H 81 (100)
Q Consensus 81 ~ 81 (100)
+
T Consensus 76 P 76 (244)
T KOG0894|consen 76 P 76 (244)
T ss_pred C
Confidence 5
No 17
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.2e-21 Score=126.78 Aligned_cols=82 Identities=28% Similarity=0.493 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHHHHHcCCCCeEEEeCCCCCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecccc-
Q 034263 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKWVETCHYC- 83 (100)
Q Consensus 5 ~~a~~RL~~El~~l~~~~~~~~~~~~~~~~g~~~l~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~- 83 (100)
..|.+||+|||.+++.+|+.|+... ..| |+.+|.+.+.|.++|.|+|..|.|.++||+.||++.|+|.|..++.
T Consensus 14 ~~at~RLqKEl~e~q~~pP~G~~~~-v~d----nlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~ 88 (161)
T KOG0427|consen 14 KIATNRLQKELSEWQNNPPTGFKHR-VTD----NLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPL 88 (161)
T ss_pred HHHHHHHHHHHHHHhcCCCCcceee-ccc----chheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCC
Confidence 4688999999999999999999887 344 9999999999999999999999999999999999999999999987
Q ss_pred cCCCCCCC
Q 034263 84 EANFSGHS 91 (100)
Q Consensus 84 HPnv~~~~ 91 (100)
||+|++++
T Consensus 89 HPHiYSNG 96 (161)
T KOG0427|consen 89 HPHIYSNG 96 (161)
T ss_pred CCceecCC
Confidence 99998873
No 18
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.1e-20 Score=128.50 Aligned_cols=81 Identities=23% Similarity=0.381 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCeEEEeCCCCCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecccccC
Q 034263 6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKWVETCHYCEA 85 (100)
Q Consensus 6 ~a~~RL~~El~~l~~~~~~~~~~~~~~~~g~~~l~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 85 (100)
...+.|.+|++.|...|+.||.+.+.++ |....++.|.||.+|||++|.|++.+.+..|||.+||+-.|+|+||||
T Consensus 10 ~vik~~~kEl~~l~~~PPdGIKV~~Nee----D~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHP 85 (223)
T KOG0423|consen 10 NVIKQLAKELKSLDESPPDGIKVVVNEE----DFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHP 85 (223)
T ss_pred HHHHHHHHHHHhcccCCCCceEEecChH----HhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccC
Confidence 4678999999999999999999988888 999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 034263 86 NFSGH 90 (100)
Q Consensus 86 nv~~~ 90 (100)
||..+
T Consensus 86 NVaaN 90 (223)
T KOG0423|consen 86 NVAAN 90 (223)
T ss_pred CcccC
Confidence 99665
No 19
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=8.5e-20 Score=123.73 Aligned_cols=82 Identities=20% Similarity=0.223 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHHHHcCCCCeEEEeCC-CCCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecccc
Q 034263 5 GIARGRLTEERKAWRKNHPHGFVAKPET-KDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKWVETCHYC 83 (100)
Q Consensus 5 ~~a~~RL~~El~~l~~~~~~~~~~~~~~-~~g~~~l~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 83 (100)
+.|+-||++|+.++..- +.++..... -+. .+..+++++|. |+++.|+||.|.|.+.+|+.||++||+|+|+|+||
T Consensus 27 s~a~lrl~~di~elnLp--~t~~~s~~~~~~d-~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~ 102 (184)
T KOG0420|consen 27 SAALLRLKKDILELNLP--PTCSLSFPDSPDD-LNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVY 102 (184)
T ss_pred cHHHHHHHhhhhhccCC--CccccccccCCcc-cccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccc
Confidence 46777888888888654 344432222 121 12225999998 99999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 034263 84 EANFSGH 90 (100)
Q Consensus 84 HPnv~~~ 90 (100)
|||||..
T Consensus 103 HPNId~~ 109 (184)
T KOG0420|consen 103 HPNIDLD 109 (184)
T ss_pred cCCcCCc
Confidence 9999987
No 20
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=3.9e-19 Score=126.67 Aligned_cols=72 Identities=31% Similarity=0.537 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHHHHHcCCCCeEEEeCCCCCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecc
Q 034263 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKWVETCH 81 (100)
Q Consensus 5 ~~a~~RL~~El~~l~~~~~~~~~~~~~~~~g~~~l~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~ 81 (100)
+.|.|||+||.++|+ +|...+.+.+.+| |+++|+++|.||.+|-||||+|+.+|.||.+||++||.+..+|+
T Consensus 10 npaVkRlmkEa~El~-~Ptd~yha~plEd----NlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTp 81 (314)
T KOG0428|consen 10 NPAVKRLMKEAAELK-DPTDHYHAQPLED----NLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTP 81 (314)
T ss_pred CHHHHHHHHHHHHhc-Cchhhhhhccchh----ceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcC
Confidence 679999999999999 7888888999998 99999999999999999999999999999999999999988874
No 21
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=4.7e-13 Score=94.29 Aligned_cols=80 Identities=20% Similarity=0.266 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHcCCCCeEEEeCCCCCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCC--CCCCeEEEecccccCCC
Q 034263 10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYP--SKPPKWVETCHYCEANF 87 (100)
Q Consensus 10 RL~~El~~l~~~~~~~~~~~~~~~~g~~~l~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP--~~pP~v~f~t~i~HPnv 87 (100)
.|+.|+..+.+.+.+||++.|.-. |-+.|..+|+ -..++|+||+|+|.|.+|++|| ..-|+|.|.+.++||+|
T Consensus 23 ~llAEf~lV~~ekL~gIyviPSya----n~l~WFGViF-vr~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~i 97 (258)
T KOG0429|consen 23 ALLAEFVLVCREKLDGIYVIPSYA----NKLLWFGVIF-VRKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLI 97 (258)
T ss_pred HHHHHHHHHHhccCCceEEccccc----ccceEEEEEE-EecccccCceEEEEEEcCccCCCcCCCCeEEeecccccccc
Confidence 577788888889999999999988 8899999999 5778999999999999999999 45899999999999999
Q ss_pred CCCCCCc
Q 034263 88 SGHSGFA 94 (100)
Q Consensus 88 ~~~~g~~ 94 (100)
.+.++..
T Consensus 98 cp~skeL 104 (258)
T KOG0429|consen 98 CPKSKEL 104 (258)
T ss_pred CCCccce
Confidence 9987654
No 22
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=5.5e-13 Score=87.44 Aligned_cols=88 Identities=23% Similarity=0.276 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHcCCCCeEEEeCCCCCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecccccCCCC
Q 034263 9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKWVETCHYCEANFS 88 (100)
Q Consensus 9 ~RL~~El~~l~~~~~~~~~~~~~~~~g~~~l~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 88 (100)
-||.+|+.+=++---++...+..+|+.+--+..|...|.||+.|+||+.+|.|+|...++||..||.|+|.+++.-+-|+
T Consensus 8 frlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn 87 (138)
T KOG0896|consen 8 FRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVN 87 (138)
T ss_pred hhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccc
Confidence 47888888877766566655655554334567899999999999999999999999999999999999999999998888
Q ss_pred CCCCCcCC
Q 034263 89 GHSGFAGS 96 (100)
Q Consensus 89 ~~~g~~~~ 96 (100)
.++|..+.
T Consensus 88 ~~~g~Vd~ 95 (138)
T KOG0896|consen 88 SSNGVVDP 95 (138)
T ss_pred cCCCccCc
Confidence 88877653
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=8.6e-11 Score=96.91 Aligned_cols=81 Identities=22% Similarity=0.434 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCeEEEeCCCCCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecc---c
Q 034263 6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKWVETCH---Y 82 (100)
Q Consensus 6 ~a~~RL~~El~~l~~~~~~~~~~~~~~~~g~~~l~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~---i 82 (100)
...+|+++|++.+.++.+.++.+.+.+. .|....+.|.||.++||++|+|.|+|.||+.||..||.|.+.+. .
T Consensus 282 ~~skrv~ke~~llskdlpEgifvrp~e~----RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R 357 (1101)
T KOG0895|consen 282 NWSKKVAKELKLLSKDLPEGIFVRPDEG----RMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVR 357 (1101)
T ss_pred hhHHHHHHHhhhhcccCCCCcccccccc----ccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeecccee
Confidence 4678999999999999999999988887 99999999999999999999999999999999999999999986 5
Q ss_pred ccCCCCCC
Q 034263 83 CEANFSGH 90 (100)
Q Consensus 83 ~HPnv~~~ 90 (100)
++||.+..
T Consensus 358 ~nPNlYn~ 365 (1101)
T KOG0895|consen 358 LNPNLYND 365 (1101)
T ss_pred ecCCcccC
Confidence 68888764
No 24
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=4.1e-11 Score=98.74 Aligned_cols=77 Identities=23% Similarity=0.428 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHcCCCCeEEEeCCCCCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecc--cccCCC
Q 034263 10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKWVETCH--YCEANF 87 (100)
Q Consensus 10 RL~~El~~l~~~~~~~~~~~~~~~~g~~~l~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~--i~HPnv 87 (100)
..+.|++.|..+-+.+|.++..++ .|....+.|.||.+|||++|.|+|.+.||++||.+||.|...+- .++||+
T Consensus 855 ~~~~~~~~~~~~~~~~~~vr~~e~----r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnl 930 (1101)
T KOG0895|consen 855 KVQTEWKILPLSLPSGIFVRAYED----RMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNL 930 (1101)
T ss_pred HHHHHHHhhhccCCCceEEEechH----HHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCccc
Confidence 344566667777899999998888 99999999999999999999999999999999999999998884 569999
Q ss_pred CCC
Q 034263 88 SGH 90 (100)
Q Consensus 88 ~~~ 90 (100)
+..
T Consensus 931 y~~ 933 (1101)
T KOG0895|consen 931 YED 933 (1101)
T ss_pred ccc
Confidence 877
No 25
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=96.93 E-value=0.0061 Score=37.81 Aligned_cols=70 Identities=20% Similarity=0.181 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEeCCCCCCCCcceEEEEEeC--CCCCCCCCCEEEEEEEcCCCCCCCCCeEEEeccc
Q 034263 8 RGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPG--KTGTDWEGGYFPLTLYFSEDYPSKPPKWVETCHY 82 (100)
Q Consensus 8 ~~RL~~El~~l~~~~~~~~~~~~~~~~g~~~l~~w~~~i~g--p~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i 82 (100)
..+...|+..|+.-=.... ...... +...+.+.+.. ...+.-..-.+++.+.||++||..+|.|......
T Consensus 3 ~e~~~~EieaL~sIy~~~~-~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 3 EEQQEEEIEALQSIYPDDF-IEIESK----SPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHHSSSSE-SSSTSS----SSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHHcCCCc-cccccC----CCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 3467778888876433333 111222 44556666632 2334444568999999999999999999876643
No 26
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=96.34 E-value=0.046 Score=33.53 Aligned_cols=41 Identities=12% Similarity=0.115 Sum_probs=28.1
Q ss_pred eEEEEEeCCCC-CCCCCCEEEEEEEcCCCCCCCCCeEEEecc
Q 034263 41 IWECIIPGKTG-TDWEGGYFPLTLYFSEDYPSKPPKWVETCH 81 (100)
Q Consensus 41 ~w~~~i~gp~~-t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~ 81 (100)
.+.+.+..... +.-..-.+.+.+.||.+||..+|.|.+...
T Consensus 24 ~~~i~l~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 24 EITIKLSPSSDEGEDQYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred EEEEEEecCCCCCCccceEEEEEEECCCCCCCCCCCeEEECC
Confidence 45555542211 122335689999999999999999988764
No 27
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=95.98 E-value=0.013 Score=38.35 Aligned_cols=35 Identities=31% Similarity=0.542 Sum_probs=29.6
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEEeccc---ccCCCCC
Q 034263 55 EGGYFPLTLYFSEDYPSKPPKWVETCHY---CEANFSG 89 (100)
Q Consensus 55 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i---~HPnv~~ 89 (100)
.++.+.+.|.||++||..||.|....+. +=|||+.
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~ 71 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVES 71 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcC
Confidence 6899999999999999999999877644 4566665
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=94.52 E-value=0.015 Score=39.00 Aligned_cols=63 Identities=22% Similarity=0.166 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHH-------cCCCCeEEEeCCCCCCCCcceEEEEEeCCCCCCCCC--CEEEEEEEcCCCCCCCCCeE
Q 034263 6 IARGRLTEERKAWRK-------NHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEG--GYFPLTLYFSEDYPSKPPKW 76 (100)
Q Consensus 6 ~a~~RL~~El~~l~~-------~~~~~~~~~~~~~~g~~~l~~w~~~i~gp~~t~y~g--g~f~~~i~fp~~YP~~pP~v 76 (100)
.-..||+.|+..|.+ +...++.++...+ =..|...-- -.++- -.|.+++.+|..||..||.|
T Consensus 24 ~W~~RLKEEy~aLI~Yv~~nK~~DndWF~lesn~~-----GT~W~GkCW----~~h~l~kYEF~~eFdIP~tYP~t~pEi 94 (161)
T PF08694_consen 24 LWVQRLKEEYQALIKYVENNKENDNDWFRLESNKE-----GTRWFGKCW----YIHNLLKYEFDLEFDIPVTYPTTAPEI 94 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT---EEEEE-TT-----SSEEEEEEE----EEETTEEEEEEEEEE--TTTTTS----
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCeEEeccCCC-----CCccccEEE----EEeeeeeEEEeeecCCCccCCCCCcce
Confidence 346799999998853 3566777764443 245544321 01222 24677888999999999998
Q ss_pred E
Q 034263 77 V 77 (100)
Q Consensus 77 ~ 77 (100)
.
T Consensus 95 ~ 95 (161)
T PF08694_consen 95 A 95 (161)
T ss_dssp B
T ss_pred e
Confidence 5
No 29
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=93.92 E-value=0.41 Score=30.99 Aligned_cols=41 Identities=17% Similarity=0.425 Sum_probs=26.8
Q ss_pred CCCCCCEEE--EEEEcCCCCCCCCCeEEEecccc-----cCCCCCCCCC
Q 034263 52 TDWEGGYFP--LTLYFSEDYPSKPPKWVETCHYC-----EANFSGHSGF 93 (100)
Q Consensus 52 t~y~gg~f~--~~i~fp~~YP~~pP~v~f~t~i~-----HPnv~~~~g~ 93 (100)
-.|+|..|. +.|-+|.+||.+||.+.....-. +.+||.+ |.
T Consensus 41 i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~-G~ 88 (121)
T PF05743_consen 41 ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSN-GR 88 (121)
T ss_dssp ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TT-SB
T ss_pred cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCC-CC
Confidence 368888886 45569999999999996544222 3378776 43
No 30
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=91.81 E-value=0.11 Score=33.63 Aligned_cols=22 Identities=23% Similarity=0.239 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCCCCCeEEEecc
Q 034263 60 PLTLYFSEDYPSKPPKWVETCH 81 (100)
Q Consensus 60 ~~~i~fp~~YP~~pP~v~f~t~ 81 (100)
-+.+.|+++||+.||.++...+
T Consensus 14 ll~~~f~~~fp~~ppf~rvv~p 35 (122)
T KOG0897|consen 14 LLLDIFDDNFPFMPPFPRVVKP 35 (122)
T ss_pred EeeeecccCCCCCCCcceeeee
Confidence 3567899999999999995443
No 31
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.73 E-value=0.37 Score=32.04 Aligned_cols=62 Identities=24% Similarity=0.331 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCeEEEeCCCCCCCCcceEEEEEeCCCCCCCCC----------CEEEEEEEcCCCCCCCCCe
Q 034263 6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEG----------GYFPLTLYFSEDYPSKPPK 75 (100)
Q Consensus 6 ~a~~RL~~El~~l~~~~~~~~~~~~~~~~g~~~l~~w~~~i~gp~~t~y~g----------g~f~~~i~fp~~YP~~pP~ 75 (100)
.=..||+.|++.|...-. -..+ +-..|.-.=..+++|-|-| -.|.+++.+|-.||-..|.
T Consensus 27 ~wvqrlkeey~sli~yvq------nnk~----~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tape 96 (167)
T KOG3357|consen 27 LWVQRLKEEYQSLIAYVQ------NNKS----NDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPE 96 (167)
T ss_pred HHHHHHHHHHHHHHHHHH------hCcc----cCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcc
Confidence 346799999999864210 0111 2223332223356666665 3466788889999999998
Q ss_pred EE
Q 034263 76 WV 77 (100)
Q Consensus 76 v~ 77 (100)
|.
T Consensus 97 ia 98 (167)
T KOG3357|consen 97 IA 98 (167)
T ss_pred cc
Confidence 74
No 32
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.41 E-value=1.7 Score=36.60 Aligned_cols=68 Identities=10% Similarity=0.055 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEeCCCCCCCCcceEEEEEeCCCCCCCCC-CEEEEEEEcCCCCCCC-CCeEEEecc
Q 034263 8 RGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEG-GYFPLTLYFSEDYPSK-PPKWVETCH 81 (100)
Q Consensus 8 ~~RL~~El~~l~~~~~~~~~~~~~~~~g~~~l~~w~~~i~gp~~t~y~g-g~f~~~i~fp~~YP~~-pP~v~f~t~ 81 (100)
..-|.+|+.-|-. ...++.++..+- .-..-.+.+.+|..-. .| -..++.|.||.+||.+ +|++.|..+
T Consensus 422 pQnLgeE~S~Ig~-k~~nV~fEkidv----a~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 422 PQNLGEEFSLIGV-KIRNVNFEKIDV----ADRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhhHHhHHhHhhc-cccccceEeecc----ccceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEecC
Confidence 3456777776643 334455543332 3466778888876544 23 2357888999999977 888888653
No 33
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=88.57 E-value=2.4 Score=27.74 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=37.0
Q ss_pred CeEEEeCCCCCCCCcceEEEEEeC--CCCCCCCCCEEEEEEEcCCCCCCCCCeEEEec
Q 034263 25 GFVAKPETKDGSVNLMIWECIIPG--KTGTDWEGGYFPLTLYFSEDYPSKPPKWVETC 80 (100)
Q Consensus 25 ~~~~~~~~~~g~~~l~~w~~~i~g--p~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (100)
++..+...+ .-..|.+ |.| -+.+.|....=.+-|.+|..||..+|...+..
T Consensus 13 g~~~E~v~e----g~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~ 65 (122)
T PF14462_consen 13 GLRWETVTE----GGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVY 65 (122)
T ss_pred CceEEEEEe----CCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEEC
Confidence 555565555 3455655 666 45677999999999999999999988765443
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=85.40 E-value=0.99 Score=30.77 Aligned_cols=40 Identities=13% Similarity=0.126 Sum_probs=26.8
Q ss_pred EEEEEcCCCCCCCCCeEEEecccc---cCCCCCCCCCcCCccCC
Q 034263 60 PLTLYFSEDYPSKPPKWVETCHYC---EANFSGHSGFAGSTQSC 100 (100)
Q Consensus 60 ~~~i~fp~~YP~~pP~v~f~t~i~---HPnv~~~~g~~~~~~~~ 100 (100)
.+.|.|+.+||+.+|.|.++.+.| +||++.. +.....+.|
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~-~~~~p~~lC 98 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPG-PEGEPVSLC 98 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCCC-CCCCCccce
Confidence 467899999999999887776555 3555443 333445555
No 35
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.00 E-value=3 Score=31.86 Aligned_cols=58 Identities=16% Similarity=0.274 Sum_probs=37.5
Q ss_pred EEeCCCCCCCCcceEEEEEeCCCCCCCCCCEEEEEEE--cCCCCCCCCCeEEEec------ccccCCCCCC
Q 034263 28 AKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY--FSEDYPSKPPKWVETC------HYCEANFSGH 90 (100)
Q Consensus 28 ~~~~~~~g~~~l~~w~~~i~gp~~t~y~gg~f~~~i~--fp~~YP~~pP~v~f~t------~i~HPnv~~~ 90 (100)
.....|++..+++....+|. .+|.|..|.+-|. +.+.||..||.+.... ++ |-+||.+
T Consensus 41 tf~~~Dg~s~~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~-~~hVd~n 106 (365)
T KOG2391|consen 41 TFTHNDGRSRLLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKV-HEHVDPN 106 (365)
T ss_pred eEEecCCCccchhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHH-hhccCCC
Confidence 33444433334554454443 5788888886665 8999999999984332 23 7777776
No 36
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=83.18 E-value=6.6 Score=28.08 Aligned_cols=36 Identities=28% Similarity=0.487 Sum_probs=25.3
Q ss_pred ceEEEEEeCCCCCCCCC--CEEEEEEEcCCCCCCCCCeE
Q 034263 40 MIWECIIPGKTGTDWEG--GYFPLTLYFSEDYPSKPPKW 76 (100)
Q Consensus 40 ~~w~~~i~gp~~t~y~g--g~f~~~i~fp~~YP~~pP~v 76 (100)
..+.+.|. ...+-++. +.+.+.+.++.+||.++|-|
T Consensus 31 ~~f~v~iq-~e~~e~d~~~~~~~l~~s~tEnYPDe~Pli 68 (215)
T KOG4018|consen 31 PIFEVTIQ-YEEGENDEPKGSFILVFSLTENYPDEAPLI 68 (215)
T ss_pred ccceeeee-cccccCCCccccEEEEEEccCCCCCCCcce
Confidence 33666665 33222221 38899999999999999999
No 37
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=78.80 E-value=6 Score=29.42 Aligned_cols=58 Identities=19% Similarity=0.165 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEEeCCCCCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEE
Q 034263 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKWV 77 (100)
Q Consensus 7 a~~RL~~El~~l~~~~~~~~~~~~~~~~g~~~l~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~ 77 (100)
..++|.+|+.+|..+.. +.+. .++ ++....+.+.. . ...-.++|.++.+||.++|.+.
T Consensus 100 ~ys~ll~EIe~IGW~kl--~~i~-~d~----~ls~i~l~~~D--~----~R~H~l~l~l~~~yp~~~p~~~ 157 (291)
T PF09765_consen 100 YYSNLLKEIEAIGWDKL--VQIQ-FDD----DLSTIKLKIFD--S----SRQHYLELKLPSNYPFEPPSCS 157 (291)
T ss_dssp GC-CHHHHHHHHHCGCC--EEEE-E-C----CCSEEEEEEET--T----CEEEEEEEETTTTTTTSEEEEC
T ss_pred HHHHHHHHHHHhccccc--eEEe-cCC----CccEEEEEEEc--C----CceEEEEEEECCCCCCCCceee
Confidence 34678889998876553 2222 234 77777887762 1 1566789999999999999764
No 38
>smart00340 HALZ homeobox associated leucin zipper.
Probab=74.91 E-value=3.1 Score=22.24 Aligned_cols=15 Identities=27% Similarity=0.288 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHc
Q 034263 7 ARGRLTEERKAWRKN 21 (100)
Q Consensus 7 a~~RL~~El~~l~~~ 21 (100)
-.+||++|+++|...
T Consensus 20 eNrRL~ke~~eLral 34 (44)
T smart00340 20 ENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHhc
Confidence 468999999999753
No 39
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=70.70 E-value=8.3 Score=25.50 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=22.5
Q ss_pred CCEEEEEEEcCCCCC-CCCCeEEEec
Q 034263 56 GGYFPLTLYFSEDYP-SKPPKWVETC 80 (100)
Q Consensus 56 gg~f~~~i~fp~~YP-~~pP~v~f~t 80 (100)
.|.|.|.-.+|--|| ..||.|.|..
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 499999999999999 9999998765
No 40
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=65.50 E-value=12 Score=26.09 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=23.1
Q ss_pred CCEEEEEEEcCCCCCCCCCeEEEecc
Q 034263 56 GGYFPLTLYFSEDYPSKPPKWVETCH 81 (100)
Q Consensus 56 gg~f~~~i~fp~~YP~~pP~v~f~t~ 81 (100)
.|.|.|+=.+|--||..+|.|.|...
T Consensus 86 ~G~~~F~TI~PG~Y~gR~~HIH~~V~ 111 (188)
T cd03457 86 DGVVTFTTIFPGWYPGRATHIHFKVH 111 (188)
T ss_pred CccEEEEEECCCCCCCCCceEEEEEE
Confidence 48999999999999999999988753
No 41
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=62.21 E-value=15 Score=24.79 Aligned_cols=25 Identities=16% Similarity=0.321 Sum_probs=22.3
Q ss_pred CCEEEEEEEcCCCCC-----CCCCeEEEec
Q 034263 56 GGYFPLTLYFSEDYP-----SKPPKWVETC 80 (100)
Q Consensus 56 gg~f~~~i~fp~~YP-----~~pP~v~f~t 80 (100)
.|.|.|+-.+|--|| ..||.|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 389999999999999 8999998765
No 42
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=58.30 E-value=40 Score=23.94 Aligned_cols=74 Identities=18% Similarity=0.198 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHHHHcCCCCeEEEeCCCCCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCC---------------
Q 034263 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY--------------- 69 (100)
Q Consensus 5 ~~a~~RL~~El~~l~~~~~~~~~~~~~~~~g~~~l~~w~~~i~gp~~t~y~gg~f~~~i~fp~~Y--------------- 69 (100)
..+..||.+.++++++.- .. ...-|.+....-.+.-| || |.+.+.|.++=
T Consensus 8 ~s~~eR~~e~~~~~k~~L---------~~----a~~GW~~~yyp~~~~~~-GG-y~f~~kF~~~~~Vtm~sd~~~~~~~~ 72 (235)
T PF14135_consen 8 KSPAERINEALAEYKKIL---------TS----APNGWKLEYYPKTDQSY-GG-YTFLMKFDDDGKVTMASDFDSASTPS 72 (235)
T ss_pred CCHHHHHHHHHHHHHHHH---------hc----CCCceEEEEECCCCccC-Cc-EEEEEEECCCCeEEEEEccCCCCcee
Confidence 357889999888887531 11 33447777773333335 33 66666665433
Q ss_pred ----CC---CCCeEEEec--ccccCCCCCCCCC
Q 034263 70 ----PS---KPPKWVETC--HYCEANFSGHSGF 93 (100)
Q Consensus 70 ----P~---~pP~v~f~t--~i~HPnv~~~~g~ 93 (100)
-. .-|.+.|.| .+.|-..++..+.
T Consensus 73 tS~Y~~~~~~gp~LsFdTyN~~iH~~s~p~~~~ 105 (235)
T PF14135_consen 73 TSSYRLKQDQGPVLSFDTYNEYIHYFSDPSNSN 105 (235)
T ss_pred eEEEEEecCCceEEEEEeCCceEEEccCCCccC
Confidence 22 248889988 3678777666443
No 43
>KOG3696 consensus Aspartyl beta-hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=57.02 E-value=31 Score=26.21 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=25.1
Q ss_pred CCCCCEEE-EEEEcC-----CCCCCCCCeEEEecccccCCCCCC
Q 034263 53 DWEGGYFP-LTLYFS-----EDYPSKPPKWVETCHYCEANFSGH 90 (100)
Q Consensus 53 ~y~gg~f~-~~i~fp-----~~YP~~pP~v~f~t~i~HPnv~~~ 90 (100)
-|+-|.+- ++..|= +.-+-..|+|.|...+|||||-++
T Consensus 283 ~w~~g~~ll~ddsf~ha~~~dgs~eds~rvV~~V~lwhpevq~~ 326 (334)
T KOG3696|consen 283 CWAEGKCLLYDDSFLHALQHDGSSEDSPRVVFTVDLWHPEVQPA 326 (334)
T ss_pred cccccceeEeechhhcccccCCCcccCceEEEEEeccCcccccc
Confidence 45555443 333333 233455899999999999999765
No 44
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=52.10 E-value=26 Score=24.54 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=21.6
Q ss_pred CCEEEEEEEcCCCCCC-----CCCeEEEec
Q 034263 56 GGYFPLTLYFSEDYPS-----KPPKWVETC 80 (100)
Q Consensus 56 gg~f~~~i~fp~~YP~-----~pP~v~f~t 80 (100)
.|.|.|+-..|-.||. .||.|.|.-
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~V 125 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVSV 125 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEEE
Confidence 3889999999999998 889887764
No 45
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=51.42 E-value=22 Score=27.01 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=22.1
Q ss_pred CEEEEEEEcCCCCCCCCCeEEEecc
Q 034263 57 GYFPLTLYFSEDYPSKPPKWVETCH 81 (100)
Q Consensus 57 g~f~~~i~fp~~YP~~pP~v~f~t~ 81 (100)
-.+.|.+..+..||.+.|+|....+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 5688999999999999999987664
No 46
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=48.16 E-value=33 Score=23.84 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=20.7
Q ss_pred CEEEEEEEcCCCCCC-----CCCeEEEec
Q 034263 57 GYFPLTLYFSEDYPS-----KPPKWVETC 80 (100)
Q Consensus 57 g~f~~~i~fp~~YP~-----~pP~v~f~t 80 (100)
|.|.|+-.+|--||. .||.|+|.-
T Consensus 93 G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~V 121 (185)
T cd03463 93 GRFSFTTVKPGAVPGRDGAGQAPHINVWV 121 (185)
T ss_pred CCEEEEEEcCCCcCCCCCCCcCCeEEEEE
Confidence 889999999999995 888887764
No 47
>COG1343 CRISPR-associated protein Cas2 [Defense mechanisms]
Probab=46.65 E-value=68 Score=19.72 Aligned_cols=44 Identities=9% Similarity=0.044 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHcCCCCeEEEeCCCCCCCCcceEEEEEeCCCCCC
Q 034263 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTD 53 (100)
Q Consensus 5 ~~a~~RL~~El~~l~~~~~~~~~~~~~~~~g~~~l~~w~~~i~gp~~t~ 53 (100)
.....+|.+++.++.......+.+.+... + ......+.|++.++
T Consensus 41 ~~~~~~l~~~~~kii~~~~Dsi~iy~~~~----~-~~~~~~~iG~~~~~ 84 (89)
T COG1343 41 PADLEKLKRRLKKIIDEDEDSIRIYPLRR----R-AARTREVIGPEKSE 84 (89)
T ss_pred HHHHHHHHHHHHhhhccccceEEEEEccc----h-hhccceeccCCCCc
Confidence 45678899999999988888898888775 2 33455666766543
No 48
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=45.52 E-value=33 Score=26.15 Aligned_cols=23 Identities=13% Similarity=0.338 Sum_probs=20.4
Q ss_pred EEEEEEEcCCCCCCCCCeEEEec
Q 034263 58 YFPLTLYFSEDYPSKPPKWVETC 80 (100)
Q Consensus 58 ~f~~~i~fp~~YP~~pP~v~f~t 80 (100)
.|-+.|.+|..||...|.++|.+
T Consensus 307 ~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 307 TFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred EEEEEEeccCCCCCcCCeEEEEe
Confidence 57888999999999999998765
No 49
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=41.91 E-value=49 Score=25.28 Aligned_cols=42 Identities=19% Similarity=0.412 Sum_probs=33.8
Q ss_pred cceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEe-cccccCC
Q 034263 39 LMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKWVET-CHYCEAN 86 (100)
Q Consensus 39 l~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~-t~i~HPn 86 (100)
...+.+.| ||.|-..+-+|.|...||..||-+.|. ..-|+|.
T Consensus 53 ~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd 95 (333)
T PF06113_consen 53 CDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPD 95 (333)
T ss_pred cceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCC
Confidence 34555554 799999999999999999999999996 3457774
No 50
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=41.86 E-value=74 Score=22.40 Aligned_cols=43 Identities=12% Similarity=0.109 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHHHcCCCCeEEEeCCCCCCCCcceEEEEEeCCCC
Q 034263 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTG 51 (100)
Q Consensus 5 ~~a~~RL~~El~~l~~~~~~~~~~~~~~~~g~~~l~~w~~~i~gp~~ 51 (100)
....+|+++|++.+.+.-...++.-|.-+ ..-.|.+.+.--.+
T Consensus 118 ~k~~~~iq~EIraviRQItasVtfLP~Le----~~ctFdvLiyTdkD 160 (203)
T KOG3285|consen 118 VKDLKRIQNEIRAVIRQITASVTFLPLLE----EICTFDVLIYTDKD 160 (203)
T ss_pred hhHHHHHHHHHHHHHHHHhhheeeccccc----ceeEEEEEEEeCCC
Confidence 34688999999999887777777777666 55667777664333
No 51
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=40.69 E-value=55 Score=24.98 Aligned_cols=42 Identities=14% Similarity=0.257 Sum_probs=30.3
Q ss_pred ceEEEEEeCCC-CCCCCCCEEEEEEE---cCCCCCCCCCeEEEeccc
Q 034263 40 MIWECIIPGKT-GTDWEGGYFPLTLY---FSEDYPSKPPKWVETCHY 82 (100)
Q Consensus 40 ~~w~~~i~gp~-~t~y~gg~f~~~i~---fp~~YP~~pP~v~f~t~i 82 (100)
.+|...|.|-. ..-|++|.+++.+. |-.-| ..-|+|||=.-+
T Consensus 197 dh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~-qR~PriRfG~vH 242 (345)
T COG3866 197 DHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLY-QRGPRIRFGMVH 242 (345)
T ss_pred cCCeeeeeccCCcccccCCceeEEEecccccccc-ccCCceEeeEEE
Confidence 36899999954 44788999999887 43333 456799987643
No 52
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=40.14 E-value=38 Score=23.25 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=26.2
Q ss_pred EEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecc
Q 034263 42 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKWVETCH 81 (100)
Q Consensus 42 w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~ 81 (100)
..+.+..|.-.|- --.-.++|.|. +|-..||+|.|+.+
T Consensus 39 ~~~iF~~~kvaP~-~~~~~lr~d~~-n~Dl~PPSV~fvDp 76 (177)
T PF14455_consen 39 ADVIFAAPKVAPR-SIGLRLRFDFT-NWDLRPPSVVFVDP 76 (177)
T ss_pred EEEEeeCCccCcc-ccceEEEEecc-ccCcCCCceEEecc
Confidence 3444444555552 22357888885 99999999999987
No 53
>TIGR01633 phi3626_gp14_N putative phage tail component, N-terminal domain. This model represents the best-conserved region of about 125 amino acids, toward the N-terminus, of a family of proteins from temperate phage of a number of Gram-positive bacteria. These phage proteins range in length from 230 to 525 amino acids.
Probab=39.81 E-value=90 Score=19.20 Aligned_cols=57 Identities=11% Similarity=0.028 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEEeCCCCCCCCcceEEEEEeCCC--CCCCCCCEEEEEEEcCCC
Q 034263 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKT--GTDWEGGYFPLTLYFSED 68 (100)
Q Consensus 7 a~~RL~~El~~l~~~~~~~~~~~~~~~~g~~~l~~w~~~i~gp~--~t~y~gg~f~~~i~fp~~ 68 (100)
..+.+.++++.+.... ....+...++ --.-|.+++.+.. +.....|.+++.+.+|+-
T Consensus 63 ~~~~~~~~l~~~L~~~-~~~~L~f~de----Pd~yy~a~~~~~~~~~~~~~~~~~titF~c~dP 121 (124)
T TIGR01633 63 DLRELFRELAGWLNSQ-EPVPLIFSDE----PDKTYYARVDEEIDLDEDTTFGKGTLNFICPDP 121 (124)
T ss_pred HHHHHHHHHHHHhCCC-CCcceEeccC----CCcEEEEEEcCccCHHHhhcccEEEEEEEecCC
Confidence 4566777788776543 2233434444 3357888888632 112345889999988763
No 54
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=38.54 E-value=25 Score=20.12 Aligned_cols=13 Identities=31% Similarity=0.342 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHH
Q 034263 8 RGRLTEERKAWRK 20 (100)
Q Consensus 8 ~~RL~~El~~l~~ 20 (100)
..||++||+++..
T Consensus 36 r~rL~kEL~d~D~ 48 (59)
T PF12065_consen 36 RQRLRKELQDMDM 48 (59)
T ss_pred HHHHHHHHHHccc
Confidence 4588888888853
No 55
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=36.41 E-value=99 Score=22.84 Aligned_cols=28 Identities=21% Similarity=0.178 Sum_probs=21.0
Q ss_pred CEEEEEEEcC-----CCCCCCCCeEEEeccccc
Q 034263 57 GYFPLTLYFS-----EDYPSKPPKWVETCHYCE 84 (100)
Q Consensus 57 g~f~~~i~fp-----~~YP~~pP~v~f~t~i~H 84 (100)
..|+.+|.++ -|-||+||+|..+++-|.
T Consensus 123 ak~kgKLKLStAKHS~DI~Fr~PtikILSK~ft 155 (276)
T PF00845_consen 123 AKFKGKLKLSTAKHSVDIPFRAPTIKILSKQFT 155 (276)
T ss_pred eeeeceeeecccccccccccCCCceEeeecccC
Confidence 4456666654 488999999999998663
No 56
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=35.38 E-value=66 Score=23.03 Aligned_cols=25 Identities=20% Similarity=0.402 Sum_probs=21.3
Q ss_pred CCEEEEEEEcCCCCCC-------CCCeEEEec
Q 034263 56 GGYFPLTLYFSEDYPS-------KPPKWVETC 80 (100)
Q Consensus 56 gg~f~~~i~fp~~YP~-------~pP~v~f~t 80 (100)
.|.|.|+-..|--||. .||.|.|.-
T Consensus 122 ~G~y~F~TI~Pg~Yp~p~~r~~~RppHIH~~V 153 (220)
T cd03464 122 DGYYRFRTIKPGAYPWGNHPNAWRPAHIHFSL 153 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEEE
Confidence 4999999999999975 899998854
No 57
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=34.64 E-value=66 Score=23.97 Aligned_cols=25 Identities=12% Similarity=0.167 Sum_probs=21.4
Q ss_pred CCEEEEEEEcCCCCC------------------CCCCeEEEec
Q 034263 56 GGYFPLTLYFSEDYP------------------SKPPKWVETC 80 (100)
Q Consensus 56 gg~f~~~i~fp~~YP------------------~~pP~v~f~t 80 (100)
.|.|.|+-..|.-|| ..||.|.|.-
T Consensus 180 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~V 222 (285)
T TIGR02439 180 EGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFFV 222 (285)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEEE
Confidence 389999999999997 6789998765
No 58
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=33.67 E-value=70 Score=23.72 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=21.6
Q ss_pred CCEEEEEEEcCCCCC------------------CCCCeEEEec
Q 034263 56 GGYFPLTLYFSEDYP------------------SKPPKWVETC 80 (100)
Q Consensus 56 gg~f~~~i~fp~~YP------------------~~pP~v~f~t 80 (100)
.|.|.|.-..|.-|| ..||.|.|.-
T Consensus 172 ~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~V 214 (277)
T cd03461 172 DGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFMV 214 (277)
T ss_pred CCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEEE
Confidence 489999999999998 5799998765
No 59
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=33.06 E-value=80 Score=23.32 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=26.3
Q ss_pred CCCCCCCEEEEEEEcCCCCCCCC--CeEEEec
Q 034263 51 GTDWEGGYFPLTLYFSEDYPSKP--PKWVETC 80 (100)
Q Consensus 51 ~t~y~gg~f~~~i~fp~~YP~~p--P~v~f~t 80 (100)
.+.+.|-.|++.+..|.+||-.- |.|.|+.
T Consensus 15 ~s~~~~~~yri~i~~P~~~~~~~~YpVlY~lD 46 (264)
T COG2819 15 KSANTGRKYRIFIATPKNYPKPGGYPVLYMLD 46 (264)
T ss_pred eecCCCcEEEEEecCCCCCCCCCCCcEEEEec
Confidence 46788999999999999999777 9998876
No 60
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=32.65 E-value=1.3e+02 Score=23.82 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=12.2
Q ss_pred CEEEEEEEcCCCCCCC
Q 034263 57 GYFPLTLYFSEDYPSK 72 (100)
Q Consensus 57 g~f~~~i~fp~~YP~~ 72 (100)
-...+.++||.+|+..
T Consensus 209 e~k~i~vtFP~dy~a~ 224 (441)
T COG0544 209 EEKDIKVTFPEDYHAE 224 (441)
T ss_pred CeeEEEEEcccccchh
Confidence 3455889999999854
No 61
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=32.57 E-value=78 Score=22.65 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=21.4
Q ss_pred CCEEEEEEEcCCCCCC-------CCCeEEEec
Q 034263 56 GGYFPLTLYFSEDYPS-------KPPKWVETC 80 (100)
Q Consensus 56 gg~f~~~i~fp~~YP~-------~pP~v~f~t 80 (100)
.|.|.|+-.+|--||. .||.|.|.-
T Consensus 117 ~G~y~F~TI~PG~Y~~p~~~~~~R~pHIH~~V 148 (220)
T TIGR02422 117 DGYYRFRTIKPGPYPWGNHHNAWRPAHIHFSL 148 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEEE
Confidence 4999999999999976 899998854
No 62
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=32.13 E-value=15 Score=31.13 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=0.0
Q ss_pred EEEEEEcCCCCCCCCCeEEEecccc
Q 034263 59 FPLTLYFSEDYPSKPPKWVETCHYC 83 (100)
Q Consensus 59 f~~~i~fp~~YP~~pP~v~f~t~i~ 83 (100)
=-|+|.+|.+||..+|.+.+.+.-|
T Consensus 716 PPl~l~vP~~YP~~sp~~~~~~~~y 740 (799)
T PF09606_consen 716 PPLRLTVPADYPRQSPQCSVDRDEY 740 (799)
T ss_dssp -------------------------
T ss_pred CCeeEeCCCCCCccCCcCcccHHHh
Confidence 3468999999999999997766544
No 63
>PF15572 Imm26: Immunity protein 26
Probab=31.98 E-value=54 Score=20.56 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=16.7
Q ss_pred CCCCCCCCCEEEEEEEcCCCCCCCCCeEEEec
Q 034263 49 KTGTDWEGGYFPLTLYFSEDYPSKPPKWVETC 80 (100)
Q Consensus 49 p~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (100)
+++.++.|.+|++ |..||++ +.|.|.-
T Consensus 7 ~~~~l~rG~i~R~----~~~ypye-~~VDFmV 33 (96)
T PF15572_consen 7 KEKYLWRGTIFRC----PGVYPYE-EVVDFMV 33 (96)
T ss_pred CCccEecceEEEe----cccCCCc-ccEEEEE
Confidence 4455677776664 4458887 6666543
No 64
>TIGR03517 GldM_gliding gliding motility-associated protein GldM. This protein family, GldM, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile. The best conserved region, toward the N-terminus, is centered on a highly hydrobobic probable transmembrane helix. Two paralogs are found in Cytophaga hutchinsonii.
Probab=31.74 E-value=81 Score=25.55 Aligned_cols=71 Identities=8% Similarity=0.168 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEEeCCCCCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEe
Q 034263 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKWVET 79 (100)
Q Consensus 7 a~~RL~~El~~l~~~~~~~~~~~~~~~~g~~~l~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~ 79 (100)
....||.|++..+.+-...+......+ +..+....+.+.......|.|..|+.+|.+...=--..|++...
T Consensus 202 ~Ls~lQsDVr~~E~evl~~Ll~~~~~~--d~~~d~~~a~V~~~s~~v~~Ge~~~a~vvL~a~ds~~~P~~~vn 272 (523)
T TIGR03517 202 VLSKLQSDVKKIESEVLNSLLSEVGQD--DFSVDNYQAIVIPKSDAVFAGETYEAEVVLGASDSTLQPTMFVN 272 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchh--hccccceeEEEEcCCceeecCCeEEEEEEEEecCCCcCceEEEC
Confidence 455777888877655433332222222 13667788888866788999999999999985545678876443
No 65
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=31.22 E-value=76 Score=22.65 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=23.2
Q ss_pred CCEEEEEEEcCCCCCCCCCeEEEecc------cccCCCCC
Q 034263 56 GGYFPLTLYFSEDYPSKPPKWVETCH------YCEANFSG 89 (100)
Q Consensus 56 gg~f~~~i~fp~~YP~~pP~v~f~t~------i~HPnv~~ 89 (100)
+|.+ .+.....+|-+.=.+.++++ +||||.++
T Consensus 66 ~g~L--~~~~t~~~pGs~g~e~~~t~G~~~~~H~Hp~ade 103 (209)
T COG2140 66 GGDL--RLDVTRIFPGSAGAEVFKTPGAMRELHYHPNADE 103 (209)
T ss_pred CCeE--EEEeeccCCCccceEEEecCCcccccccCCCCCc
Confidence 4444 44455678888777778875 79999987
No 66
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=30.87 E-value=85 Score=23.36 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=21.0
Q ss_pred CCEEEEEEEcCCCCC------------------CCCCeEEEec
Q 034263 56 GGYFPLTLYFSEDYP------------------SKPPKWVETC 80 (100)
Q Consensus 56 gg~f~~~i~fp~~YP------------------~~pP~v~f~t 80 (100)
.|.|.|.-.+|..|| ..||.|.|.-
T Consensus 184 dG~y~F~TI~Pg~YpiP~dGp~G~lL~~~Grh~~RpaHIHf~V 226 (281)
T TIGR02438 184 EGRFEITTMQPAPYQIPTDGPTGKFIAAAGGHPWRPAHLHLKV 226 (281)
T ss_pred CCCEEEEEECCCCcCCCCCCchHHHHHhcccCCCCCCEEEEEE
Confidence 489999999998887 5889998765
No 67
>PLN02344 chorismate mutase
Probab=30.78 E-value=20 Score=26.73 Aligned_cols=13 Identities=46% Similarity=0.785 Sum_probs=9.2
Q ss_pred CCCCCCcCCccCC
Q 034263 88 SGHSGFAGSTQSC 100 (100)
Q Consensus 88 ~~~~g~~~~~~~~ 100 (100)
.|..|..||+..|
T Consensus 157 ~Gdd~NyGSta~c 169 (284)
T PLN02344 157 EGDDGNYGSTAVC 169 (284)
T ss_pred CCCccccHHHHHH
Confidence 4666778887766
No 68
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=30.07 E-value=88 Score=23.28 Aligned_cols=25 Identities=12% Similarity=0.252 Sum_probs=21.1
Q ss_pred CCEEEEEEEcCCCCC------------------CCCCeEEEec
Q 034263 56 GGYFPLTLYFSEDYP------------------SKPPKWVETC 80 (100)
Q Consensus 56 gg~f~~~i~fp~~YP------------------~~pP~v~f~t 80 (100)
.|.|.|+-..|.-|| ..||.|.|.-
T Consensus 176 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~V 218 (282)
T cd03460 176 DGRYRFRSIMPSGYGVPPGGPTQQLLNALGRHGNRPAHIHFFV 218 (282)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhhcCCCCCCCeEEEEE
Confidence 399999999999997 6789998765
No 69
>PF09458 H_lectin: H-type lectin domain; InterPro: IPR019019 The H-type lectin domain is a unit of six beta chains, combined into a homo-hexamer. It is involved in self/non-self recognition of cells, through binding with carbohydrates []. It is sometimes found in association with the C-terminal domain of coagulation factor F5/8 (IPR000421 from INTERPRO). ; GO: 0005529 sugar binding, 0007155 cell adhesion; PDB: 2CGY_A 2CGZ_A 2CCV_A 2CE6_A 2VME_B 2VMC_A 2VMD_A 2VM9_A 2W94_A 2WN3_C ....
Probab=29.79 E-value=85 Score=17.57 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=12.7
Q ss_pred EEEEEEEcCCCCCCCCCeEEEecc
Q 034263 58 YFPLTLYFSEDYPSKPPKWVETCH 81 (100)
Q Consensus 58 ~f~~~i~fp~~YP~~pP~v~f~t~ 81 (100)
.+...|.|+..|.. ||+|.+--.
T Consensus 2 ~~~~~I~F~~~F~~-~P~V~~~i~ 24 (72)
T PF09458_consen 2 EYSQTITFSKPFSS-PPQVIVSIN 24 (72)
T ss_dssp EEEEEEE-SS--SS---EEEEEEE
T ss_pred ceEEEeEcChhcCC-CCEEEEEEE
Confidence 35678999999984 999965443
No 70
>PF05709 Sipho_tail: Phage tail protein; InterPro: IPR008841 This family consists of several Siphovirus and other phage tail component proteins as well as some bacterial proteins of unknown function. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 4DIV_X 2X8K_C.
Probab=29.68 E-value=1.9e+02 Score=19.79 Aligned_cols=60 Identities=12% Similarity=0.148 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEEeCCCCCCCCcceEEEEEeCC---CCCCCCCCEEEEEEEcCCCCCCC
Q 034263 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGK---TGTDWEGGYFPLTLYFSEDYPSK 72 (100)
Q Consensus 7 a~~RL~~El~~l~~~~~~~~~~~~~~~~g~~~l~~w~~~i~gp---~~t~y~gg~f~~~i~fp~~YP~~ 72 (100)
...++.+++.++..... ...+...++ .-..|.+.+.+. +.. ...+.+.+.+.+|+-|-..
T Consensus 53 ~~~~~~~~l~~~l~~~~-~~~l~f~d~----p~~~y~~~~~~~~~~~~~-~~~~~~ti~f~c~dPy~y~ 115 (249)
T PF05709_consen 53 DFEQKRRELASWLNPKE-PVKLIFDDD----PDKYYYAKVSGSPDPDEG-NNSGTFTITFTCPDPYAYS 115 (249)
T ss_dssp HHHHHHHHHHHHH--SS--EEEEETTS----TT-EEEEEEEEEEE--SS-SSCEEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhhCcCC-CEEEEEECC----CCEEEEEEECCccccccc-ceeEEEEEEEEECCceeee
Confidence 45677888888875443 367776666 557888888774 222 3345788888876555444
No 71
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.93 E-value=52 Score=25.98 Aligned_cols=23 Identities=43% Similarity=0.784 Sum_probs=15.2
Q ss_pred EEEEEcCCCCCCC-CCeEEEecccc
Q 034263 60 PLTLYFSEDYPSK-PPKWVETCHYC 83 (100)
Q Consensus 60 ~~~i~fp~~YP~~-pP~v~f~t~i~ 83 (100)
.+...+|++||.. ||++ ++...|
T Consensus 77 vlkf~LP~~YPs~spP~f-~l~s~W 100 (445)
T KOG1814|consen 77 VLKFHLPNDYPSVSPPKF-ELKSYW 100 (445)
T ss_pred eeeeecCCccccCCCCce-eeehcc
Confidence 4677899999966 5554 444333
No 72
>PF12627 PolyA_pol_RNAbd: Probable RNA and SrmB- binding site of polymerase A; PDB: 1OU5_B 3H38_A 3H3A_B 3H39_B 3H37_A 3AQN_A 3AQK_A 3AQM_B 3AQL_B 1MIY_A ....
Probab=28.69 E-value=63 Score=17.62 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHcCC
Q 034263 5 GIARGRLTEERKAWRKNHP 23 (100)
Q Consensus 5 ~~a~~RL~~El~~l~~~~~ 23 (100)
..+..||..|+..+...+.
T Consensus 21 ~is~ERi~~El~kil~~~~ 39 (64)
T PF12627_consen 21 KISKERIREELEKILSSPN 39 (64)
T ss_dssp GS-HHHHHHHHHHHHTSTT
T ss_pred cCCHHHHHHHHHHHHcCCC
Confidence 3577899999999987654
No 73
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=27.75 E-value=87 Score=15.37 Aligned_cols=14 Identities=7% Similarity=-0.095 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHH
Q 034263 5 GIARGRLTEERKAW 18 (100)
Q Consensus 5 ~~a~~RL~~El~~l 18 (100)
...+++|++|+++.
T Consensus 16 P~la~~iR~~ie~~ 29 (30)
T PF14824_consen 16 PRLARLIRKEIERL 29 (30)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh
Confidence 45678888888764
No 74
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=27.26 E-value=1.1e+02 Score=22.25 Aligned_cols=25 Identities=12% Similarity=0.208 Sum_probs=20.8
Q ss_pred CCEEEEEEEcCCCCC------------------CCCCeEEEec
Q 034263 56 GGYFPLTLYFSEDYP------------------SKPPKWVETC 80 (100)
Q Consensus 56 gg~f~~~i~fp~~YP------------------~~pP~v~f~t 80 (100)
.|.|.|+-..|.-|| ..||.|.|.-
T Consensus 150 ~G~y~F~Ti~P~~YpiP~dgp~g~lL~~~grh~~RpaHIH~~V 192 (246)
T TIGR02465 150 DGSYEVRTTMPVPYQIPDAGPTGALLETMGRHSWRPAHVHYKV 192 (246)
T ss_pred CCCEEEEEECCCCCCCCCCCchHHHHHhcccCCCCCCeEEEEE
Confidence 489999999999997 4689997765
No 75
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=25.54 E-value=86 Score=19.06 Aligned_cols=15 Identities=27% Similarity=0.302 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHH
Q 034263 6 IARGRLTEERKAWRK 20 (100)
Q Consensus 6 ~a~~RL~~El~~l~~ 20 (100)
.+.+||.+|.....+
T Consensus 7 ~~vkRL~KE~~~Y~k 21 (90)
T PF02970_consen 7 GVVKRLLKEEASYEK 21 (90)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 578999999887754
No 76
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.38 E-value=81 Score=17.48 Aligned_cols=16 Identities=31% Similarity=0.237 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHc
Q 034263 6 IARGRLTEERKAWRKN 21 (100)
Q Consensus 6 ~a~~RL~~El~~l~~~ 21 (100)
...+|+++|++++++.
T Consensus 48 ~~~~~~~k~l~~le~e 63 (68)
T PF06305_consen 48 RRIRRLRKELKKLEKE 63 (68)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3567788888877764
No 77
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=24.63 E-value=1.2e+02 Score=15.98 Aligned_cols=17 Identities=29% Similarity=0.178 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHc
Q 034263 5 GIARGRLTEERKAWRKN 21 (100)
Q Consensus 5 ~~a~~RL~~El~~l~~~ 21 (100)
+.+.|-|..|+..+.++
T Consensus 26 ~~alkELIeELvNITqn 42 (43)
T PF03487_consen 26 STALKELIEELVNITQN 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHhhccC
Confidence 56888999999888764
No 78
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=24.47 E-value=38 Score=22.70 Aligned_cols=18 Identities=22% Similarity=0.433 Sum_probs=13.8
Q ss_pred EEEEEEEcCCCCCCCCCe
Q 034263 58 YFPLTLYFSEDYPSKPPK 75 (100)
Q Consensus 58 ~f~~~i~fp~~YP~~pP~ 75 (100)
.|+-.-.+|.|||+..|.
T Consensus 103 ~YR~KW~LP~dYPMvAPn 120 (148)
T COG4957 103 EYRAKWGLPPDYPMVAPN 120 (148)
T ss_pred HHHHhcCCCCCCCccchH
Confidence 355566789999998885
No 79
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=23.77 E-value=91 Score=20.95 Aligned_cols=16 Identities=31% Similarity=0.279 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHH
Q 034263 5 GIARGRLTEERKAWRK 20 (100)
Q Consensus 5 ~~a~~RL~~El~~l~~ 20 (100)
.....+|++||..|..
T Consensus 10 ~eg~~~L~~EL~~L~~ 25 (158)
T PRK05892 10 PAARDHLEAELARLRA 25 (158)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5677788888887764
No 80
>COG3470 Tpd Uncharacterized protein probably involved in high-affinity Fe2+ transport [Inorganic ion transport and metabolism]
Probab=23.37 E-value=86 Score=21.64 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=19.4
Q ss_pred CEEEEEEEcCCCCCCCCCeEEEecccccCCCCCCCCC
Q 034263 57 GYFPLTLYFSEDYPSKPPKWVETCHYCEANFSGHSGF 93 (100)
Q Consensus 57 g~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~~g~ 93 (100)
|.|++++.+. +|+-. .||-+||++||.
T Consensus 133 G~YKl~~~Is------~Ps~~----~~~rHvDeeTGV 159 (179)
T COG3470 133 GNYKLTFEIS------APSKA----GYGRHVDEETGV 159 (179)
T ss_pred ccEEEEEEec------CCCcc----ccceecccccCc
Confidence 6777777764 33322 789999999997
No 81
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=22.98 E-value=2.5e+02 Score=23.22 Aligned_cols=44 Identities=14% Similarity=0.068 Sum_probs=25.8
Q ss_pred CcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCC-CCeEEEec-ccccCCCCCC
Q 034263 38 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSK-PPKWVETC-HYCEANFSGH 90 (100)
Q Consensus 38 ~l~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~-pP~v~f~t-~i~HPnv~~~ 90 (100)
....|.+++.|++.+|+.-- ..=|.+ +|.++|+. .-.|+-.+-.
T Consensus 109 ~~~~w~~~l~~~~~~p~~p~---------~~~p~~~~p~~rvlhltDiH~D~~Y~ 154 (577)
T KOG3770|consen 109 LENNWNLTLPGPPKPPRLPK---------LPLPLKNNPTFRVLHLTDIHLDPDYS 154 (577)
T ss_pred hhhcceeeccCCCCCCCCCC---------CCCCCCCCCceeEEEeeccccCcccc
Confidence 45679999999888886320 122333 47777654 3345444433
No 82
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=22.79 E-value=1.5e+02 Score=21.76 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=20.2
Q ss_pred CEEEEEEEcCCCCC------------------CCCCeEEEec
Q 034263 57 GYFPLTLYFSEDYP------------------SKPPKWVETC 80 (100)
Q Consensus 57 g~f~~~i~fp~~YP------------------~~pP~v~f~t 80 (100)
|.|.|.-..|.-|| ..||.|.|.-
T Consensus 157 G~y~f~Ti~P~~Ypip~dGp~g~lL~~~grh~~RpaHIHf~V 198 (256)
T cd03458 157 GRYRFRTIRPVPYPIPPDGPTGELLEALGRHPWRPAHIHFMV 198 (256)
T ss_pred CCEEEEEECCCCccCCCCCcHHHHHHhcccCCCCCCeEEEEE
Confidence 89999999999886 5789887765
No 83
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=22.58 E-value=1.9e+02 Score=17.36 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=23.7
Q ss_pred ceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecc
Q 034263 40 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKWVETCH 81 (100)
Q Consensus 40 ~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~ 81 (100)
.+|.+-|.++++.-...-+=++...+-+.|+. |...+..+
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~p 41 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKP 41 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSST
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCC
Confidence 47888888877654444566677777777764 55444443
No 84
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=22.23 E-value=1e+02 Score=20.30 Aligned_cols=16 Identities=19% Similarity=0.150 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHH
Q 034263 5 GIARGRLTEERKAWRK 20 (100)
Q Consensus 5 ~~a~~RL~~El~~l~~ 20 (100)
....+||++||..|..
T Consensus 4 ~~g~~~L~~el~~L~~ 19 (151)
T TIGR01462 4 QEGYEKLKEELEYLKT 19 (151)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6678889999888864
No 85
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=21.01 E-value=1.1e+02 Score=25.27 Aligned_cols=29 Identities=14% Similarity=0.213 Sum_probs=22.7
Q ss_pred CCCCCCEEEEEEEcCCCCCC---CCCeEEEecc
Q 034263 52 TDWEGGYFPLTLYFSEDYPS---KPPKWVETCH 81 (100)
Q Consensus 52 t~y~gg~f~~~i~fp~~YP~---~pP~v~f~t~ 81 (100)
+||.=|.|.+. .+|+.||+ +-|.+.|+|+
T Consensus 248 GpY~WgryDll-vlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDLL-VLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceEE-EecCCCCcccccCcceeeecc
Confidence 36666888864 46789994 6999999996
No 86
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.96 E-value=1.8e+02 Score=16.49 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=16.0
Q ss_pred CCchhHHHHHHHHHHHHHHHcCCC
Q 034263 1 MSGGGIARGRLTEERKAWRKNHPH 24 (100)
Q Consensus 1 Ms~~~~a~~RL~~El~~l~~~~~~ 24 (100)
||+ .-|..-+.+||++..++...
T Consensus 28 mSs-GEAIa~VA~elRe~hk~~~~ 50 (60)
T COG3140 28 MSS-GEAIALVAQELRENHKGENR 50 (60)
T ss_pred ccc-hhHHHHHHHHHHHHhccccc
Confidence 554 45777888899988876543
No 87
>PF15590 Imm15: Immunity protein 15
Probab=20.94 E-value=1.8e+02 Score=17.06 Aligned_cols=38 Identities=11% Similarity=0.083 Sum_probs=19.5
Q ss_pred HHHHHHHHcCCCCeEEEeCCCCCCCCcceEEEEEeCCCCCCCCCC
Q 034263 13 EERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGG 57 (100)
Q Consensus 13 ~El~~l~~~~~~~~~~~~~~~~g~~~l~~w~~~i~gp~~t~y~gg 57 (100)
+-|+++...+..+-....+.. +-..|.-+ +..+-|+||
T Consensus 13 n~Lqkv~~~~d~We~~y~DP~----D~r~W~~~---~~~s~~hGG 50 (69)
T PF15590_consen 13 NRLQKVASSPDGWETLYQDPR----DGRYWEKS---YPESHMHGG 50 (69)
T ss_pred HHHHHHhcCCcchhhhccCCC----CCceeEEe---cCcccccCC
Confidence 345555555544544444443 33556544 556666665
No 88
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=20.46 E-value=1.5e+02 Score=18.00 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=15.3
Q ss_pred CEEEEEEEcCCCC--CCCCCeEE
Q 034263 57 GYFPLTLYFSEDY--PSKPPKWV 77 (100)
Q Consensus 57 g~f~~~i~fp~~Y--P~~pP~v~ 77 (100)
|.|.|.+.|.+.+ |+.||.+.
T Consensus 62 G~htLtl~~~d~~h~~~~~~v~s 84 (87)
T PF14347_consen 62 GKHTLTLQLGDGDHVPHDPPVMS 84 (87)
T ss_pred CCEEEEEEeCCCCcccCCCceee
Confidence 7888888887644 77787653
No 89
>PF11819 DUF3338: Domain of unknown function (DUF3338); InterPro: IPR021774 This family of proteins are functionally uncharacterised. This family is found in eukaryotes. This presumed domain is about 130 amino acids in length.
Probab=20.21 E-value=54 Score=21.90 Aligned_cols=12 Identities=50% Similarity=0.935 Sum_probs=7.5
Q ss_pred CCCCCC----CCCeEE
Q 034263 66 SEDYPS----KPPKWV 77 (100)
Q Consensus 66 p~~YP~----~pP~v~ 77 (100)
|.+||. +||+|+
T Consensus 70 P~E~PL~pGEk~P~iR 85 (138)
T PF11819_consen 70 PPEYPLEPGEKPPKIR 85 (138)
T ss_pred CCccCCCCCCCCCccc
Confidence 566664 377774
No 90
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=20.11 E-value=1.8e+02 Score=21.22 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=20.4
Q ss_pred CCEEEEEEEcCCCCC------------------CCCCeEEEec
Q 034263 56 GGYFPLTLYFSEDYP------------------SKPPKWVETC 80 (100)
Q Consensus 56 gg~f~~~i~fp~~YP------------------~~pP~v~f~t 80 (100)
.|.|.|+-..|.-|| ..||.|.|.-
T Consensus 151 ~G~y~F~Ti~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~V 193 (247)
T cd03462 151 DGRYEVRTTVPVPYQIPNDGPTGALLEAMGGHSWRPAHVHFKV 193 (247)
T ss_pred CCCEEEEEECCCCcCCCCCCcHHHHHHhcccCCCCCCeEEEEE
Confidence 488999999998885 4789998765
Done!