Query 034264
Match_columns 100
No_of_seqs 113 out of 987
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 11:34:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034264.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034264hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00042 CY Substituted updates 99.9 2.5E-25 5.4E-30 140.2 11.3 85 5-91 1-105 (105)
2 smart00043 CY Cystatin-like do 99.9 1.5E-25 3.2E-30 141.7 8.3 88 3-92 2-107 (107)
3 PF00031 Cystatin: Cystatin do 99.9 8.7E-22 1.9E-26 121.6 10.9 74 5-80 1-94 (94)
4 PF07430 PP1: Phloem filament 99.6 1.5E-14 3.3E-19 99.5 11.4 82 4-87 114-199 (202)
5 PF07430 PP1: Phloem filament 99.1 9.2E-11 2E-15 80.9 5.8 89 2-91 5-98 (202)
6 TIGR01638 Atha_cystat_rel Arab 99.1 5.5E-10 1.2E-14 69.1 6.8 65 14-78 10-77 (92)
7 PF06907 Latexin: Latexin; In 97.5 0.0046 1E-07 43.8 11.2 81 14-95 4-92 (220)
8 TIGR01572 A_thl_para_3677 Arab 96.2 0.035 7.5E-07 40.4 7.4 75 19-94 42-119 (265)
9 PF05679 CHGN: Chondroitin N-a 83.3 6.7 0.00014 31.0 7.1 50 15-64 159-210 (499)
10 PF00666 Cathelicidins: Cathel 73.1 4 8.7E-05 23.8 2.3 47 18-65 3-53 (67)
11 COG3360 Uncharacterized conser 68.2 22 0.00048 20.9 5.9 44 19-63 19-64 (71)
12 KOG2650 Zinc carboxypeptidase 60.2 24 0.00053 27.6 5.0 62 4-66 318-389 (418)
13 PF12274 DUF3615: Protein of u 51.6 53 0.0011 19.9 8.8 63 30-93 1-74 (96)
14 PF07311 Dodecin: Dodecin; In 51.0 48 0.001 19.2 7.2 47 16-63 13-61 (66)
15 cd01781 AF6_RA_repeat2 Ubiquit 46.7 40 0.00086 21.2 3.5 30 15-44 24-55 (100)
16 PRK15344 type III secretion sy 43.5 38 0.00082 20.0 2.9 21 13-33 29-49 (71)
17 PF13028 DUF3889: Protein of u 43.3 81 0.0018 19.7 11.1 69 14-83 18-88 (97)
18 KOG3205 Rho GDP-dissociation i 39.4 67 0.0015 22.6 4.1 29 33-61 102-130 (200)
19 PF09151 DUF1936: Domain of un 33.6 45 0.00098 16.6 1.8 16 80-95 16-31 (36)
20 KOG1693 emp24/gp25L/p24 family 33.2 1E+02 0.0023 21.9 4.3 24 41-64 44-67 (209)
21 TIGR02105 III_needle type III 30.1 80 0.0017 18.5 2.9 21 13-33 30-50 (72)
22 cd01783 DAGK_delta_RA Ubiquiti 29.3 1.2E+02 0.0027 18.9 3.8 30 15-44 25-56 (97)
23 PF07353 Uroplakin_II: Uroplak 29.3 1.3E+02 0.0028 20.8 4.1 16 50-65 109-124 (184)
24 PF06157 DUF973: Protein of un 29.2 1E+02 0.0022 22.9 3.9 29 48-79 257-285 (285)
25 PF08522 DUF1735: Domain of un 28.4 71 0.0015 18.7 2.5 30 26-55 15-49 (86)
26 cd06247 M14_CPO Peptidase M14 28.0 1.1E+02 0.0023 22.7 3.9 51 14-65 208-268 (298)
27 PF02995 DUF229: Protein of un 27.9 68 0.0015 25.4 3.0 28 4-33 451-478 (497)
28 PF02115 Rho_GDI: RHO protein 26.2 64 0.0014 22.7 2.3 29 33-61 104-132 (200)
29 PF11606 AlcCBM31: Family 31 c 23.4 1.9E+02 0.0041 17.8 4.5 13 52-64 60-72 (93)
30 PLN00042 photosystem II oxygen 23.0 2.6E+02 0.0056 20.6 5.0 41 41-81 185-243 (260)
31 cd00153 RalGDS_RA Ubiquitin do 22.7 1.4E+02 0.0031 18.3 3.0 28 19-46 29-58 (87)
32 KOG1594 Uncharacterized enzyme 22.5 48 0.001 24.7 1.1 25 70-95 241-274 (305)
33 PF14730 DUF4468: Domain of un 20.8 2E+02 0.0043 17.1 3.8 57 14-75 11-83 (91)
34 KOG4238 Bifunctional ATP sulfu 20.7 94 0.002 24.6 2.4 45 46-90 510-564 (627)
35 PF13149 DUF3988: Protein of u 20.6 2.8E+02 0.0061 19.1 4.8 27 52-81 257-283 (284)
No 1
>cd00042 CY Substituted updates: Jan 30, 2002
Probab=99.93 E-value=2.5e-25 Score=140.16 Aligned_cols=85 Identities=56% Similarity=0.859 Sum_probs=80.0
Q ss_pred ceeEEcCCCCCcHHHHHHHHHHHHHhhhcCCCc-eeEEEEEEEEEEeccceEEEEEEEEeeC------------------
Q 034264 5 GGVREVEATANNQEIVNLARFAVDEHNKKQNSN-LQFVKVVSAKQQVVSGTLYDITLEAVEG------------------ 65 (100)
Q Consensus 5 GG~~~~~~~~~d~~v~~~a~~Av~~~n~~~~~~-~~~~~V~~a~~QVVaG~nY~i~v~~~~~------------------ 65 (100)
|||.+++ .+||++++++++|+.+||+++++. |.+.+|++|++|||+|++|+|+|++.++
T Consensus 1 gg~~~~~--~~d~~~~~~~~~a~~~~N~~~~~~~~~~~~i~~~~~QvvaG~~y~i~~~~~~t~C~k~~~~~~~~~c~~~~ 78 (105)
T cd00042 1 GGPSDIP--ANDPEVQELADFAVAEYNKKSNDKYLEFFKVLSAKSQVVAGTNYYITVEAGDTNCKKSSVPLDCPDCKLLE 78 (105)
T ss_pred CCCccCC--CCCHHHHHHHHHHHHHHHhhcCccceeEEEEEEEEEEEEeeeEEEEEEEEecccccccCcccccccccccc
Confidence 8999996 999999999999999999998887 7889999999999999999999999863
Q ss_pred -CeeEEEEEEEEEecCCCceeeEEEEe
Q 034264 66 -GQKKLFEAKVWEKPWMQFKELKEFNT 91 (100)
Q Consensus 66 -~~~~~c~~~V~~~pW~~~~~l~~f~~ 91 (100)
+....|.+.||.+||.+..+|++++|
T Consensus 79 ~~~~~~C~~~V~~~pw~~~~~l~~~~C 105 (105)
T cd00042 79 EGKKKFCTAKVWEKPWENFKELLSFKC 105 (105)
T ss_pred cCCCEEEEEEEEecCCCCceeeeeccC
Confidence 56889999999999999999999988
No 2
>smart00043 CY Cystatin-like domain. Cystatins are a family of cysteine protease inhibitors that occur mainly as single domain proteins. However some extracellular proteins such as kininogen, His-rich glycoprotein and fetuin also contain these domains.
Probab=99.93 E-value=1.5e-25 Score=141.71 Aligned_cols=88 Identities=47% Similarity=0.674 Sum_probs=80.0
Q ss_pred ccceeEEcCCCCCcHHHHHHHHHHHHHhhhcCCCcee--EEEEEEEEEEeccceEEEEEEEEeeCCee------------
Q 034264 3 TVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQ--FVKVVSAKQQVVSGTLYDITLEAVEGGQK------------ 68 (100)
Q Consensus 3 ~~GG~~~~~~~~~d~~v~~~a~~Av~~~n~~~~~~~~--~~~V~~a~~QVVaG~nY~i~v~~~~~~~~------------ 68 (100)
++|||++++ .+||++++++++|+.+||+++++.|. +++|++|++|||+|++|+|+|++.++.-.
T Consensus 2 ~~Gg~~~~~--~~d~~~~~~~~~a~~~~N~~~~~~~~~~~~~v~~a~~QvvaG~~y~l~~~v~~t~C~k~~~~~~~C~~~ 79 (107)
T smart00043 2 CLGGPSDVP--PNDPEVQEAADFAVAEYNKKSNDKYELRVIKVVSAKSQVVAGTNYYLKVEVGETNCKKLSVDLENCPFL 79 (107)
T ss_pred CCCCCccCC--CCCHHHHHHHHHHHHHHHHhcccchhhhhhhhheeeeeeecceEEEEEEEEEeceeccCCcccccCCCC
Confidence 689999997 89999999999999999999988876 79999999999999999999999974211
Q ss_pred ----EEEEEEEEEecCCCceeeEEEEec
Q 034264 69 ----KLFEAKVWEKPWMQFKELKEFNTV 92 (100)
Q Consensus 69 ----~~c~~~V~~~pW~~~~~l~~f~~~ 92 (100)
..|.++||.+||+++.++++|+|.
T Consensus 80 ~~~~~~C~~~V~~~pw~~~~~~~~~~C~ 107 (107)
T smart00043 80 DQGEKFCTAKVWEKPWENKIKLVEFKCT 107 (107)
T ss_pred CCCccEEEEEEEecCCCCccCccceecC
Confidence 589999999999999999999983
No 3
>PF00031 Cystatin: Cystatin domain; InterPro: IPR000010 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The cystatins are cysteine proteinase inhibitors belonging to MEROPS inhibitor family I25, clan IH [, , ]. They mainly inhibit peptidases belonging to peptidase families C1 (papain family) and C13 (legumain family). The cystatin family includes: The Type 1 cystatins, which are intracellular cystatins that are present in the cytosol of many cell types, but can also appear in body fluids at significant concentrations. They are single-chain polypeptides of about 100 residues, which have neither disulphide bonds nor carbohydrate side chains. The Type 2 cystatins, which are mainly extracellular secreted polypeptides synthesised with a 19-28 residue signal peptide. They are broadly distributed and found in most body fluids. The Type 3 cystatins, which are multidomain proteins. The mammalian representatives of this group are the kininogens. There are three different kininogens in mammals: H- (high molecular mass, IPR002395 from INTERPRO) and L- (low molecular mass) kininogen which are found in a number of species, and T-kininogen that is found only in rat. Unclassified cystatins. These are cystatin-like proteins found in a range of organisms: plant phytocystatins, fetuin in mammals, insect cystatins and a puff adder venom cystatin which inhibits metalloproteases of the MEROPS peptidase family M12 (astacin/adamalysin). Also a number of the cystatins-like proteins have been shown to be devoid of inhibitory activity. All true cystatins inhibit cysteine peptidases of the papain family (MEROPS peptidase family C1), and some also inhibit legumain family enzymes (MEROPS peptidase family C13). These peptidases play key roles in physiological processes, such as intracellular protein degradation (cathepsins B, H and L), are pivotal in the remodelling of bone (cathepsin K), and may be important in the control of antigen presentation (cathepsin S, mammalian legumain). Moreover, the activities of such peptidases are increased in pathophysiological conditions, such as cancer metastasis and inflammation. Additionally, such peptidases are essential for several pathogenic parasites and bacteria. Thus in animals cystatins not only have capacity to regulate normal body processes and perhaps cause disease when down-regulated, but in other organisms may also participate in defence against biotic and abiotic stress. ; GO: 0004869 cysteine-type endopeptidase inhibitor activity; PDB: 3L0R_B 2W9P_K 2W9Q_A 3S67_A 3QRD_D 1R4C_G 3GAX_A 1TIJ_B 1G96_A 3NX0_A ....
Probab=99.88 E-value=8.7e-22 Score=121.63 Aligned_cols=74 Identities=42% Similarity=0.706 Sum_probs=67.6
Q ss_pred ceeEEcCCCCCcHHHHHHHHHHHHHhhhcCCC--ceeEEEEEEEEEEeccceEEEEEEEEeeC-----------------
Q 034264 5 GGVREVEATANNQEIVNLARFAVDEHNKKQNS--NLQFVKVVSAKQQVVSGTLYDITLEAVEG----------------- 65 (100)
Q Consensus 5 GG~~~~~~~~~d~~v~~~a~~Av~~~n~~~~~--~~~~~~V~~a~~QVVaG~nY~i~v~~~~~----------------- 65 (100)
|||++++ ++||++++++++|+.+||+++++ .|.+.+|++|++|||+|++|+|+|.++++
T Consensus 1 Gg~~~~~--~~dp~v~~~~~~al~~~N~~~~~~~~~~~~~v~~a~~QvV~G~~Y~i~~~~~~t~C~k~~~~~~~C~~~~~ 78 (94)
T PF00031_consen 1 GGPSPVD--PNDPEVQEAAEFALDKFNEQSNSGYKFKLVKVISATTQVVAGINYYIEFEVGETNCKKSSKDFENCPFQEE 78 (94)
T ss_dssp SSEEEEC--TTSHHHHHHHHHHHHHHHHHSTTSEEEEEEEEEEEEEEESSSEEEEEEEEEEEEEEETCEEEEEECEBEST
T ss_pred CCCccCC--CCCHHHHHHHHHHHHHHHHhCcccCcceeeeeeEEEEeecCCceEEEEEEEEcccccccccccccCCcccc
Confidence 9999997 89999999999999999999855 46789999999999999999999999862
Q ss_pred -CeeEEEEEEEEEecC
Q 034264 66 -GQKKLFEAKVWEKPW 80 (100)
Q Consensus 66 -~~~~~c~~~V~~~pW 80 (100)
.....|.++||.+||
T Consensus 79 ~~~~~~C~~~v~~~pW 94 (94)
T PF00031_consen 79 QPWTKFCKFTVWERPW 94 (94)
T ss_dssp TSSEEEEEEEEEEECG
T ss_pred CCceeeEEEEEEECCC
Confidence 567789999999999
No 4
>PF07430 PP1: Phloem filament protein PP1; InterPro: IPR009994 This domain represents a conserved region approximately 200 residues long, four copies of which are found within the plant phloem filament protein PP1. This is one of the constituents of the proteinaceous filaments found in the sieve elements of Cucurbita phloem [].
Probab=99.61 E-value=1.5e-14 Score=99.46 Aligned_cols=82 Identities=32% Similarity=0.408 Sum_probs=73.3
Q ss_pred cceeEEcCCCCCcHHHHHHHHHHHHHhhhcCCCceeEEEEEEEEEEecc--ceEEEEEEEEeeC-CeeEEEEEEEEEe-c
Q 034264 4 VGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVS--GTLYDITLEAVEG-GQKKLFEAKVWEK-P 79 (100)
Q Consensus 4 ~GG~~~~~~~~~d~~v~~~a~~Av~~~n~~~~~~~~~~~V~~a~~QVVa--G~nY~i~v~~~~~-~~~~~c~~~V~~~-p 79 (100)
..+|.+++ |.++|.+|++++||+.+|| +.++.++|.+|.+++.|=++ |++|+|++.+.|+ ++...|+|.||+. +
T Consensus 114 ~~~Wi~I~-nin~p~VQeLgkFAV~EhN-K~gd~LkF~KV~eGw~q~l~~d~ikYrLhI~AkDg~G~~~~YeAvV~~k~~ 191 (202)
T PF07430_consen 114 SKKWIPIP-NINNPFVQELGKFAVIEHN-KAGDKLKFEKVYEGWYQDLGNDGIKYRLHIVAKDGLGRLGNYEAVVWEKQF 191 (202)
T ss_pred cCCCEECC-CCCcHHHHHHHHHHHHHHh-hcCCceEEEEEeeEEEEeccCCCceEEEEEEeecCCCCcCceEEEEEEecc
Confidence 35799998 9999999999999999999 67889999999999999885 6999999999997 8999999999998 5
Q ss_pred CCCceeeE
Q 034264 80 WMQFKELK 87 (100)
Q Consensus 80 W~~~~~l~ 87 (100)
|.+..+++
T Consensus 192 ~sk~i~i~ 199 (202)
T PF07430_consen 192 LSKKIKIL 199 (202)
T ss_pred CcceEEEE
Confidence 77665554
No 5
>PF07430 PP1: Phloem filament protein PP1; InterPro: IPR009994 This domain represents a conserved region approximately 200 residues long, four copies of which are found within the plant phloem filament protein PP1. This is one of the constituents of the proteinaceous filaments found in the sieve elements of Cucurbita phloem [].
Probab=99.15 E-value=9.2e-11 Score=80.88 Aligned_cols=89 Identities=17% Similarity=0.271 Sum_probs=80.6
Q ss_pred cccceeEEcCCCCCcHHHHHHHHHHHHHhhhcCCCceeEEEEEEEE--EEeccceEEEEEEEEee-CCeeEEEEEEEEEe
Q 034264 2 ATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAK--QQVVSGTLYDITLEAVE-GGQKKLFEAKVWEK 78 (100)
Q Consensus 2 ~~~GG~~~~~~~~~d~~v~~~a~~Av~~~n~~~~~~~~~~~V~~a~--~QVVaG~nY~i~v~~~~-~~~~~~c~~~V~~~ 78 (100)
...+||.+++ |..+|.+|+++++|+.+++.+.+..++|..|.+++ .|.+.+++|++++++.| -++...|.+.|+++
T Consensus 5 ~~~~~w~~ip-~v~~~~~q~v~~~~veq~k~~~~~~l~~~~v~egwy~el~~~~~~yrlhv~a~d~l~r~l~~e~ii~e~ 83 (202)
T PF07430_consen 5 PFSPKWIKIP-DVKEPCLQEVAKFAVEQFKIQYGDSLKFRSVVEGWYFELCPNSLKYRLHVKAIDFLGRSLKYEAIIIEE 83 (202)
T ss_pred ccCcccccCC-cccchHHHHHHHHHHHHHhhhcccceeeeeeeeceeecccccceeEEEeehhhhhhccccceeeeeeeh
Confidence 3468999999 99999999999999999999999999999999999 67889999999999988 47889999999998
Q ss_pred c--CCCceeeEEEEe
Q 034264 79 P--WMQFKELKEFNT 91 (100)
Q Consensus 79 p--W~~~~~l~~f~~ 91 (100)
- |++.++|.|+.-
T Consensus 84 ~~~~~~~~kl~s~l~ 98 (202)
T PF07430_consen 84 KPQLTRIRKLASILA 98 (202)
T ss_pred hhhhhhhhhhheeeE
Confidence 5 999999888753
No 6
>TIGR01638 Atha_cystat_rel Arabidopsis thaliana cystatin-related protein. This model represents a family similar in sequence and probably homologous to a large family of cysteine proteinase inhibitors, or cystatins, as described by pfam model pfam00031. Cystatins may help plants resist attack by insects.
Probab=99.08 E-value=5.5e-10 Score=69.10 Aligned_cols=65 Identities=25% Similarity=0.161 Sum_probs=56.2
Q ss_pred CCcHHHHHHHHHHHHHhhhcCCCceeEEEEEEEEEEeccceEEEEEEEEeeC---CeeEEEEEEEEEe
Q 034264 14 ANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITLEAVEG---GQKKLFEAKVWEK 78 (100)
Q Consensus 14 ~~d~~v~~~a~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~nY~i~v~~~~~---~~~~~c~~~V~~~ 78 (100)
.+..-+++++..|+++||+..+..++|++|++|..|..+|.+|+|+|.+.|. ...+.+++.||..
T Consensus 10 T~rd~~~~la~~al~k~N~~~~t~lEfV~vVrAn~~~~~g~~~yITF~Ard~~d~p~~e~~q~~v~~~ 77 (92)
T TIGR01638 10 TNRDLLERLSYVASKKYNDTKFLNLELVEVVRANYRGGAKSKSYITFEARDKPDGPLGEYQQAAVVYL 77 (92)
T ss_pred CHHHHHHHHHHHHHHHhhhhcCceEEEEEEEEEEeeccceEEEEEEEEEecCCCCCHHHhhheeeEec
Confidence 5666788999999999999999999999999999999999999999999982 3445667777663
No 7
>PF06907 Latexin: Latexin; InterPro: IPR009684 This family consists of several animal specific latexin and proteins related to latexin that belong to MEROPS proteinase inhibitor family I47, clan I- []. Latexin, a protein possessing inhibitory activity against rat carboxypeptidase A1 (CPA1) and CPA2 (MEROPS peptidase family M14A), is expressed in a neuronal subset in the cerebral cortex and cells in other neural and non-neural tissues of rat [, ]. OCX-32, the 32 kDa eggshell matrix protein, is present at high levels in the uterine fluid during the terminal phase of eggshell formation, and is localised predominantly in the outer eggshell. The timing of OCX-32 secretion into the uterine fluid suggests that it may play a role in the termination of mineral deposition []. OCX-32 protein possesses limited identity (32%) to two unrelated proteins: latexin and to a skin protein that is encoded by a retinoic acid receptor-responsive gene, TIG1. Tazarotene Induced Gene 1 (TIG1) is a putative 228 transmembrane protein with a small N-terminal intracellular region, a single membrane-spanning hydrophobic region, and a large C-terminal extracellular region containing a glycosylation signal. TIG1 is up-regulated by retinoic acid receptor but not by retinoid X receptor-specific synthetic retinoids []. TIG1 may be a tumour suppressor gene whose diminished expression is involved in the malignant progression of prostate cancer [].; PDB: 1WNH_A 2BO9_B.
Probab=97.46 E-value=0.0046 Score=43.82 Aligned_cols=81 Identities=19% Similarity=0.174 Sum_probs=57.4
Q ss_pred CCcHHHHHHHHHHHHHhhhcCCCce---eEEEEEEEEEEecc--ceEEEEEEEEee---CCeeEEEEEEEEEecCCCcee
Q 034264 14 ANNQEIVNLARFAVDEHNKKQNSNL---QFVKVVSAKQQVVS--GTLYDITLEAVE---GGQKKLFEAKVWEKPWMQFKE 85 (100)
Q Consensus 14 ~~d~~v~~~a~~Av~~~n~~~~~~~---~~~~V~~a~~QVVa--G~nY~i~v~~~~---~~~~~~c~~~V~~~pW~~~~~ 85 (100)
++.=..+++|+.|+.-+|-..|+.+ .+.+|.+|...+++ |-+|.|+|.+.+ +.....|.|+|+-. -.+..-
T Consensus 4 p~h~~a~rAA~va~hy~N~~~GSP~~l~~l~~V~~a~~e~ip~~G~Ky~L~FSte~~~~~e~~g~CsA~V~f~-~qkp~P 82 (220)
T PF06907_consen 4 PSHRPAQRAARVAQHYINYRAGSPSRLFVLQQVQKARAEDIPGEGCKYDLVFSTEEYIEGEHLGNCSAEVFFK-NQKPRP 82 (220)
T ss_dssp TTSHHHHHHHHHHHHHHHHHH-BTTB-EEEEEEEEEEEEEETTTEEEEEEEEEEEETTT---EEEEEEEEEET-T-----
T ss_pred CcchHHHHHHHHHHHHhccccCCCceeeehhhhhhhhheeccCCCCEEEEEEEhHHhhcCCceeEeEEEEEec-CCCCCC
Confidence 4444578999999999999988754 46899999999885 679999999987 56888999999982 233345
Q ss_pred eEEEEecCCC
Q 034264 86 LKEFNTVAQS 95 (100)
Q Consensus 86 l~~f~~~~~~ 95 (100)
-..+.|.+-.
T Consensus 83 ~V~vtc~~~~ 92 (220)
T PF06907_consen 83 AVNVTCTGLI 92 (220)
T ss_dssp EEEEEECS--
T ss_pred cEEEEEEecc
Confidence 6788887643
No 8
>TIGR01572 A_thl_para_3677 Arabidopsis paralogous family TIGR01572. This model describes a paralogous family of hypothetical proteins in Arabidopsis thaliana. No homologs are detected from other species. Length heterogeneity within the family is attributable partly to a 21-residue repeat present in from zero to three tandem copies. The central region of the repeat resembles the pattern [VIF][FY][QK]GX[LM]P[DEK]XXXDDAL.
Probab=96.20 E-value=0.035 Score=40.45 Aligned_cols=75 Identities=21% Similarity=0.203 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhhhcCCCceeEEEEEEEEEEeccceEEEEEEEEeeC---CeeEEEEEEEEEecCCCceeeEEEEecCC
Q 034264 19 IVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITLEAVEG---GQKKLFEAKVWEKPWMQFKELKEFNTVAQ 94 (100)
Q Consensus 19 v~~~a~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~nY~i~v~~~~~---~~~~~c~~~V~~~pW~~~~~l~~f~~~~~ 94 (100)
++-.|+.++--||-..|++|+|..|.+.-++..+-+.|.|++.+.|. +..+.|+..|.++- .++..|+-.-|.+-
T Consensus 42 vklyAr~GLH~YN~~~GTNlel~~v~K~N~~~~~~~syyITL~A~DP~s~~s~qTFQtrV~e~~-~~~L~ltt~iaRpK 119 (265)
T TIGR01572 42 VKIYARVGLHRYNFLEGTNLELDHVDKFNKRMCALSSYYITLLAVDPDSRFLQQTFQVRVDEQK-LETLDLTVEIARPK 119 (265)
T ss_pred HHHHHHhhhhhhhhccCccceehhhhhhccchhhheeeeEEEEEecCCccccceEEEEEEEecc-CCcEEEEEEEEeeC
Confidence 68899999999999999999999999999999999999999999983 57888999997753 34455555555433
No 9
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=83.33 E-value=6.7 Score=31.05 Aligned_cols=50 Identities=18% Similarity=0.313 Sum_probs=43.0
Q ss_pred CcHHHHHHHHHHHHHhhhcCCCceeEEEEEEEEEEe--ccceEEEEEEEEee
Q 034264 15 NNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQV--VSGTLYDITLEAVE 64 (100)
Q Consensus 15 ~d~~v~~~a~~Av~~~n~~~~~~~~~~~V~~a~~QV--VaG~nY~i~v~~~~ 64 (100)
.-.++.++...|+...|+.....++|.+++.+-..+ .-|+.|.|++.+..
T Consensus 159 ~~~dl~~vi~~a~~~ln~~~~~~~~~~~l~~GY~R~dp~rG~~Y~Ldl~l~~ 210 (499)
T PF05679_consen 159 DREDLDDVIEQAMEELNRKSRRVLEFRDLINGYRRFDPTRGMDYILDLLLKY 210 (499)
T ss_pred hHHHHHHHHHHHHHHHhccccccEEeeeeeeEEEEecCCCCceEEEEEEEee
Confidence 346788999999999999987889999999998775 57999999998765
No 10
>PF00666 Cathelicidins: Cathelicidin; InterPro: IPR001894 The precursor sequences of a number of antimicrobial peptides secreted by neutrophils (polymorphonuclear leukocytes) upon activation have been found to be evolutionarily related and are collectively known as cathelicidins []. Structurally, these proteins consist of three domains: a signal sequence, a conserved region of about 100 residues that contains four cysteines involved in two disulphide bonds, and a highly divergent C-terminal section of variable size. It is in this C-terminal section that the antibacterial peptides are found; they are proteolytically processed from their precursor by enzymes such as elastase. This structure is shown in the following schematic representation: +---+--------------------------------+--------------------+ |Sig| Propeptide C C C C | Antibacterial pep. | +---+----------------|--|--|--|------+--------------------+ | | | | +--+ +--+ 'C': conserved cysteine involved in a disulphide bond. ; GO: 0006952 defense response, 0005576 extracellular region; PDB: 1KWI_A 1PFP_A 1LXE_A 1N5P_A 1N5H_A.
Probab=73.13 E-value=4 Score=23.83 Aligned_cols=47 Identities=13% Similarity=0.070 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhhhcCCCceeEEEEEEEEEEec----cceEEEEEEEEeeC
Q 034264 18 EIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVV----SGTLYDITLEAVEG 65 (100)
Q Consensus 18 ~v~~~a~~Av~~~n~~~~~~~~~~~V~~a~~QVV----aG~nY~i~v~~~~~ 65 (100)
.|+++...||+.||+++.+. .+.+++.+.-+.- .++.--+.|.+.++
T Consensus 3 sY~eav~~Av~~yN~~s~~~-nlfRLLe~~p~P~~~~~~~~~~pl~FtIkET 53 (67)
T PF00666_consen 3 SYEEAVLRAVDFYNQGSSGE-NLFRLLELDPPPGWDEDPSTPKPLNFTIKET 53 (67)
T ss_dssp CCHHHHHHHHHHHHHCS-SS-EEEEEEEE---SSSSSSSSS-EEEEEEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCcc-CceeeeeccCCCCCCCCcCcceeeEEEEeec
Confidence 36899999999999987653 3556666665542 22345555555553
No 11
>COG3360 Uncharacterized conserved protein [Function unknown]
Probab=68.19 E-value=22 Score=20.89 Aligned_cols=44 Identities=27% Similarity=0.385 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhhhcCCCceeEEEEEEEEEEeccce--EEEEEEEEe
Q 034264 19 IVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGT--LYDITLEAV 63 (100)
Q Consensus 19 v~~~a~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~--nY~i~v~~~ 63 (100)
+..++.-|+..-.+ +-+.+...+|+.-+-+|+.|- .|.++++++
T Consensus 19 ~d~Ai~~Ai~RA~~-t~~~l~wfeV~~~rg~v~~g~v~hyqv~lkVg 64 (71)
T COG3360 19 IDAAIANAIARAAD-TLDNLDWFEVVETRGHVVDGAVAHYQVTLKVG 64 (71)
T ss_pred HHHHHHHHHHHHHh-hhhcceEEEEEeecccEeecceEEEEEEEEEE
Confidence 55566666665422 234578899999999999884 588888875
No 12
>KOG2650 consensus Zinc carboxypeptidase [Function unknown]
Probab=60.20 E-value=24 Score=27.57 Aligned_cols=62 Identities=18% Similarity=0.174 Sum_probs=42.7
Q ss_pred cceeEEcCCCCCcHHHHHHHHHHHHHhhhcCCCceeEEEEEE------EE----EEeccceEEEEEEEEeeCC
Q 034264 4 VGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVS------AK----QQVVSGTLYDITLEAVEGG 66 (100)
Q Consensus 4 ~GG~~~~~~~~~d~~v~~~a~~Av~~~n~~~~~~~~~~~V~~------a~----~QVVaG~nY~i~v~~~~~~ 66 (100)
|=|++... ..+-++++++|+.|++...+..++.|++-..-. +. .+=+.|++|-+++++.|.+
T Consensus 318 Pyg~~~~~-~~~~~dl~~va~~a~~ai~~~~gt~Y~~G~~~~~~y~asG~S~Dway~~~gi~~~ft~ELrd~g 389 (418)
T KOG2650|consen 318 PYGYTNDL-PEDYEDLQEVARAAADALKSVYGTKYTVGSSADTLYPASGGSDDWAYDVLGIPYAFTFELRDTG 389 (418)
T ss_pred cccccCCC-CCCHHHHHHHHHHHHHHHHHHhCCEEEeccccceeeccCCchHHHhhhccCCCEEEEEEeccCC
Confidence 33554433 256677899999999999998888887632211 11 3346788999999998653
No 13
>PF12274 DUF3615: Protein of unknown function (DUF3615); InterPro: IPR022059 This domain family is found in bacteria and eukaryotes, and is typically between 86 and 97 amino acids in length. There is a conserved FAE sequence motif. There is a single completely conserved residue F that may be functionally important.
Probab=51.62 E-value=53 Score=19.88 Aligned_cols=63 Identities=17% Similarity=0.213 Sum_probs=38.7
Q ss_pred hhhcC---CCceeEEEEEEEEEEeccce--EEEEEEEEeeC------CeeEEEEEEEEEecCCCceeeEEEEecC
Q 034264 30 HNKKQ---NSNLQFVKVVSAKQQVVSGT--LYDITLEAVEG------GQKKLFEAKVWEKPWMQFKELKEFNTVA 93 (100)
Q Consensus 30 ~n~~~---~~~~~~~~V~~a~~QVVaG~--nY~i~v~~~~~------~~~~~c~~~V~~~pW~~~~~l~~f~~~~ 93 (100)
||++. +..|+|.+|+....=.-.|. =|.+.|.+... +...++-|+|. ..-.....+.-.-++.
T Consensus 1 Yn~~~~~~~~~yeL~~v~~~~~~~e~~~~~y~HvNF~A~~~~~~~~~~~~~LFFAE~~-~~~~~~~~v~~C~~l~ 74 (96)
T PF12274_consen 1 YNEDHPLLGLEYELVDVLHSCFIFERGGWNYYHVNFTAKTKGPDSDDGSPTLFFAEVS-NDCKDEDDVSCCCPLE 74 (96)
T ss_pred CcccCCCCCcCEEEeEEEeeeeeEeCCCcEEEeEEEEEEcCCccCCCCCceEEEEEEe-cCCCCCCEEEEEEEeE
Confidence 45654 56799999987764333333 37788877652 46778999998 2223344555444443
No 14
>PF07311 Dodecin: Dodecin; InterPro: IPR009923 This entry represents proteins with a Dodecin-like topology. Dodecin flavoprotein is a small dodecameric flavin-binding protein from Halobacterium salinarium (Halobacterium halobium) that contains two flavins stacked in a single binding pocket between two tryptophan residues to form an aromatic tetrade []. Dodecin binds riboflavin, although it appears to have a broad specificity for flavins. Lumichrome, a molecule associated with flavin metabolism, appears to be a ligand of dodecin, which could act as a waste-trapping device. ; PDB: 2VYX_L 2DEG_F 2V18_K 2V19_D 2UX9_B 2CZ8_E 2V21_F 2CC8_A 2CCB_A 2VX9_A ....
Probab=50.99 E-value=48 Score=19.20 Aligned_cols=47 Identities=21% Similarity=0.322 Sum_probs=35.8
Q ss_pred cHHHHHHHHHHHHHhhhcCCCceeEEEEEEEEEEeccc--eEEEEEEEEe
Q 034264 16 NQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSG--TLYDITLEAV 63 (100)
Q Consensus 16 d~~v~~~a~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG--~nY~i~v~~~ 63 (100)
....+++++.|+.+-++- =..++.+.|..-+-.|..| ..|+.+++++
T Consensus 13 ~~S~edAv~~Av~~A~kT-l~ni~~~eV~e~~~~v~dg~i~~y~v~lkv~ 61 (66)
T PF07311_consen 13 PKSWEDAVQNAVARASKT-LRNIRWFEVKEQRGHVEDGKITEYQVNLKVS 61 (66)
T ss_dssp SSHHHHHHHHHHHHHHHH-SSSEEEEEEEEEEEEEETTCEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHhhc-hhCcEEEEEEEEEEEEeCCcEEEEEEEEEEE
Confidence 345788888888887654 2357788999888889988 4688888764
No 15
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=46.66 E-value=40 Score=21.18 Aligned_cols=30 Identities=13% Similarity=0.163 Sum_probs=23.8
Q ss_pred CcHHHHHHHHHHHHHhhhcCCC--ceeEEEEE
Q 034264 15 NNQEIVNLARFAVDEHNKKQNS--NLQFVKVV 44 (100)
Q Consensus 15 ~d~~v~~~a~~Av~~~n~~~~~--~~~~~~V~ 44 (100)
.+....++...|+.+|+-+..+ .|++++|+
T Consensus 24 ~~~~a~~vV~eALeKygL~~e~p~~Y~LveV~ 55 (100)
T cd01781 24 INDNADRIVGEALEKYGLEKSDPDDYCLVEVS 55 (100)
T ss_pred CCccHHHHHHHHHHHhCCCccCccceEEEEEe
Confidence 4556889999999999987543 68888775
No 16
>PRK15344 type III secretion system needle protein SsaG; Provisional
Probab=43.46 E-value=38 Score=19.99 Aligned_cols=21 Identities=24% Similarity=0.178 Sum_probs=18.0
Q ss_pred CCCcHHHHHHHHHHHHHhhhc
Q 034264 13 TANNQEIVNLARFAVDEHNKK 33 (100)
Q Consensus 13 ~~~d~~v~~~a~~Av~~~n~~ 33 (100)
+++||+.---++|++.+|+.-
T Consensus 29 ~~~nP~~ml~lQf~i~QyS~~ 49 (71)
T PRK15344 29 DLLNPESMIKAQFALQQYSTF 49 (71)
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 688999988899999998753
No 17
>PF13028 DUF3889: Protein of unknown function (DUF3889)
Probab=43.28 E-value=81 Score=19.66 Aligned_cols=69 Identities=20% Similarity=0.172 Sum_probs=49.8
Q ss_pred CCcHHHHHHHHHHHHHhhhcCCCceeEEEEEEE-EEEeccc-eEEEEEEEEeeCCeeEEEEEEEEEecCCCc
Q 034264 14 ANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSA-KQQVVSG-TLYDITLEAVEGGQKKLFEAKVWEKPWMQF 83 (100)
Q Consensus 14 ~~d~~v~~~a~~Av~~~n~~~~~~~~~~~V~~a-~~QVVaG-~nY~i~v~~~~~~~~~~c~~~V~~~pW~~~ 83 (100)
..+|.+.+.-+.|+++.-++-. ..+++.-... +.|+-.+ +.-.++|.+.++++..-..+.|+--|=.++
T Consensus 18 ~~~p~yaKWgrlA~~~~k~~Yp-~a~v~DY~~vGr~~~~~~~t~e~Fkl~l~~~~kefgV~v~V~f~p~T~k 88 (97)
T PF13028_consen 18 QAQPSYAKWGRLAVQETKEKYP-GAEVVDYLYVGRTKVNDEQTVEKFKLWLREGGKEFGVFVTVSFNPKTEK 88 (97)
T ss_pred cCCCcHHHHHHHHHHHHHHHCC-CCEEeeeeeecceecCCcceEEEEEEEEEcCCeEEEEEEEEEEeCCCCc
Confidence 4568899999999998766521 1233333343 4556666 789999999999999999999988885544
No 18
>KOG3205 consensus Rho GDP-dissociation inhibitor [Signal transduction mechanisms]
Probab=39.40 E-value=67 Score=22.60 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=21.6
Q ss_pred cCCCceeEEEEEEEEEEeccceEEEEEEE
Q 034264 33 KQNSNLQFVKVVSAKQQVVSGTLYDITLE 61 (100)
Q Consensus 33 ~~~~~~~~~~V~~a~~QVVaG~nY~i~v~ 61 (100)
+.|+.|++.-..+++.-||+|..|.=++.
T Consensus 102 KEGs~Y~lki~F~Vq~eIvSGLrY~q~v~ 130 (200)
T KOG3205|consen 102 KEGSEYRLKISFRVQREIVSGLRYVQTVY 130 (200)
T ss_pred ecCcEEEEEEEEEEeeheeccceeeeEEe
Confidence 34677888777888888888888866553
No 19
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=33.56 E-value=45 Score=16.58 Aligned_cols=16 Identities=25% Similarity=0.300 Sum_probs=10.4
Q ss_pred CCCceeeEEEEecCCC
Q 034264 80 WMQFKELKEFNTVAQS 95 (100)
Q Consensus 80 W~~~~~l~~f~~~~~~ 95 (100)
...+-++.-|.|.++|
T Consensus 16 y~~kgeikvfrcsnpa 31 (36)
T PF09151_consen 16 YNQKGEIKVFRCSNPA 31 (36)
T ss_dssp E-TTS-EEEEEES-TT
T ss_pred ecCCCcEEEEEcCCCc
Confidence 3456788899999887
No 20
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.22 E-value=1e+02 Score=21.88 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=21.0
Q ss_pred EEEEEEEEEeccceEEEEEEEEee
Q 034264 41 VKVVSAKQQVVSGTLYDITLEAVE 64 (100)
Q Consensus 41 ~~V~~a~~QVVaG~nY~i~v~~~~ 64 (100)
.+....+.||..|-+|.+++.+.+
T Consensus 44 ~~~~~~~fqV~tGG~fDVD~~I~a 67 (209)
T KOG1693|consen 44 DDTTSFEFQVQTGGHFDVDYDIEA 67 (209)
T ss_pred CceEEEEEEEEeCCceeeEEEEEC
Confidence 556788999999999999999876
No 21
>TIGR02105 III_needle type III secretion apparatus needle protein. Type III secretion systems translocate proteins, usually virulence factors, out across both inner and outer membranes of certain Gram-negative bacteria and further across the plasma membrane and into the cytoplasm of the host cell. This protein, termed YscF in Yersinia, and EscF, PscF, EprI, etc. in other systems, forms the needle of the injection apparatus.
Probab=30.11 E-value=80 Score=18.54 Aligned_cols=21 Identities=19% Similarity=0.339 Sum_probs=17.4
Q ss_pred CCCcHHHHHHHHHHHHHhhhc
Q 034264 13 TANNQEIVNLARFAVDEHNKK 33 (100)
Q Consensus 13 ~~~d~~v~~~a~~Av~~~n~~ 33 (100)
+++||...-=.+|++.+||.-
T Consensus 30 ~~~nP~~La~~Q~~~~qYs~~ 50 (72)
T TIGR02105 30 LPNDPELMAELQFALNQYSAY 50 (72)
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 468999888889999999853
No 22
>cd01783 DAGK_delta_RA Ubiquitin-like domain of Diacylgylcerol kinase (DAGK). DAGK_delta_RA Diacylgylcerol kinase (DAGK) phosphorylates the second messenger diacylglycerol to phosphatidic acid as part of a protein kinase C pathway. Nine mammalian DAGK isotypes have been identified, which are classified into five subgroups according to their domain architecture and the DAGK-delta and -theta isozymes, which fall into one such group, contain an RA (Ras-associated) domain. DAGKs also contain a conserved catalytic domain (DAGKc), an assesory domain (DAGKa), and an array of conserved motifs that are likely to play a role in lipid-protein and protein-protein interactions in various DAG/PA-dependent signalling pathways.
Probab=29.28 E-value=1.2e+02 Score=18.85 Aligned_cols=30 Identities=3% Similarity=0.184 Sum_probs=24.6
Q ss_pred CcHHHHHHHHHHHHHhhhcCCC--ceeEEEEE
Q 034264 15 NNQEIVNLARFAVDEHNKKQNS--NLQFVKVV 44 (100)
Q Consensus 15 ~d~~v~~~a~~Av~~~n~~~~~--~~~~~~V~ 44 (100)
.|.-++++...|+.+|+.+..+ .|.+++|.
T Consensus 25 ~~tt~~dvv~eaL~kfGl~~~~~~~y~LvEV~ 56 (97)
T cd01783 25 KDTTVQDVILEVLPLFGLQAECPESFRLIEVL 56 (97)
T ss_pred ccchHHHHHHHHHHHhCcccCCccccEEEEEE
Confidence 5667899999999999988544 68888885
No 23
>PF07353 Uroplakin_II: Uroplakin II; InterPro: IPR009952 This family contains uroplakin II, which is approximately 180 residues long and seems to be restricted to mammals. Uroplakin II is an integral membrane protein, and is one of the components of the apical plaques of mammalian urothelium formed by the asymmetric unit membrane - this is believed to play a role in strengthening the urothelial apical surface to prevent the cells from rupturing during bladder distension [].; GO: 0016044 cellular membrane organization, 0030176 integral to endoplasmic reticulum membrane
Probab=29.27 E-value=1.3e+02 Score=20.79 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=13.9
Q ss_pred eccceEEEEEEEEeeC
Q 034264 50 VVSGTLYDITLEAVEG 65 (100)
Q Consensus 50 VVaG~nY~i~v~~~~~ 65 (100)
++.|++|++.+.+.++
T Consensus 109 L~pGTkY~isY~Vtkg 124 (184)
T PF07353_consen 109 LQPGTKYYISYLVTKG 124 (184)
T ss_pred cCCCcEEEEEEEEecC
Confidence 3589999999999886
No 24
>PF06157 DUF973: Protein of unknown function (DUF973); InterPro: IPR009321 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=29.15 E-value=1e+02 Score=22.90 Aligned_cols=29 Identities=31% Similarity=0.500 Sum_probs=18.2
Q ss_pred EEeccceEEEEEEEEeeCCeeEEEEEEEEEec
Q 034264 48 QQVVSGTLYDITLEAVEGGQKKLFEAKVWEKP 79 (100)
Q Consensus 48 ~QVVaG~nY~i~v~~~~~~~~~~c~~~V~~~p 79 (100)
.+.+.|.+|.+++.+.++. ..++.|--+|
T Consensus 257 ~~l~~g~~Y~i~l~l~ng~---~v~v~~~y~p 285 (285)
T PF06157_consen 257 LNLVPGNTYTITLTLSNGQ---TVDVNVIYQP 285 (285)
T ss_pred ccCCCCCEEEEEEEEcCCc---EEEEEEEEeC
Confidence 4467788888888888662 4444444344
No 25
>PF08522 DUF1735: Domain of unknown function (DUF1735); InterPro: IPR013728 This domain of unknown function is found in a number of bacterial proteins including acylhydrolases.; PDB: 3POH_A 4DQA_A 3SOT_D 3NQK_A 3N91_A 3P02_A.
Probab=28.40 E-value=71 Score=18.70 Aligned_cols=30 Identities=17% Similarity=0.285 Sum_probs=19.2
Q ss_pred HHHHhhhcCCCceeE-----EEEEEEEEEeccceE
Q 034264 26 AVDEHNKKQNSNLQF-----VKVVSAKQQVVSGTL 55 (100)
Q Consensus 26 Av~~~n~~~~~~~~~-----~~V~~a~~QVVaG~n 55 (100)
.+..||+..+..|++ ..+-..+..+-+|..
T Consensus 15 ~l~~YN~~~gt~y~~LP~~~y~l~~~~~~i~aG~~ 49 (86)
T PF08522_consen 15 LLDAYNKANGTNYELLPADYYTLPNKTVTIPAGET 49 (86)
T ss_dssp HHHHHHHHHTGBEEE--GGGEEESSSEEEEETTCS
T ss_pred HHHHHHHhcCCccEECCHHHEEEcCCEEEEcCCCE
Confidence 488999988877754 333333455667754
No 26
>cd06247 M14_CPO Peptidase M14 carboxypeptidase (CP) O (CPO, also known as metallocarboxypeptidase C; EC 3.4.17.) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPO has not been well characterized as yet, and little is known about it. Based on modeling studies, CPO has been suggested to have specificity for acidic residues rather than aliphatic/aromatic residues as in A-like enzymes or basic residues as in B-like enzymes. It remains to be demonstrated that CPO is functional as an MCP.
Probab=28.02 E-value=1.1e+02 Score=22.71 Aligned_cols=51 Identities=18% Similarity=0.241 Sum_probs=33.6
Q ss_pred CCcHHHHHHHHHHHHHhhhcCCCceeEEEE---E---EEE----EEeccceEEEEEEEEeeC
Q 034264 14 ANNQEIVNLARFAVDEHNKKQNSNLQFVKV---V---SAK----QQVVSGTLYDITLEAVEG 65 (100)
Q Consensus 14 ~~d~~v~~~a~~Av~~~n~~~~~~~~~~~V---~---~a~----~QVVaG~nY~i~v~~~~~ 65 (100)
+++.++.++++.+++...+..+..|+.-.. + +.. .+ ..|..|-+++++.+.
T Consensus 208 ~n~~~~~~~a~~~~~ai~~~~~~~y~~g~~~~~~y~a~G~s~Dwa~-~~~~~~s~t~El~~~ 268 (298)
T cd06247 208 SNHEEMMLVAQKAAAALKEKHGTEYRVGSSALILYSNSGSSRDWAV-DIGIPFSYTFELRDN 268 (298)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCccCCcccccccCCCChhhhhh-ccCCCEEEEEEeCCC
Confidence 577888899999988888776666655211 1 111 12 247788888888764
No 27
>PF02995 DUF229: Protein of unknown function (DUF229); InterPro: IPR004245 Members of this family are uncharacterised with a long conserved region that may contain several domains.
Probab=27.95 E-value=68 Score=25.42 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=24.4
Q ss_pred cceeEEcCCCCCcHHHHHHHHHHHHHhhhc
Q 034264 4 VGGVREVEATANNQEIVNLARFAVDEHNKK 33 (100)
Q Consensus 4 ~GG~~~~~~~~~d~~v~~~a~~Av~~~n~~ 33 (100)
+.+|.++. .+++.++.+|+++|...|+.
T Consensus 451 C~~~~~~~--~~~~~~~~~a~~~v~~iN~~ 478 (497)
T PF02995_consen 451 CEGWKTIP--TNDSLVQRIAKFLVDHINEY 478 (497)
T ss_pred CcCccccc--cCcHHHHHHHHHHHHHHHHH
Confidence 56788886 88889999999999999986
No 28
>PF02115 Rho_GDI: RHO protein GDP dissociation inhibitor; InterPro: IPR000406 The GDP dissociation inhibitor for rho proteins, rho GDI, regulates GDP/GTP exchange by inhibiting the dissociation of GDP from them. The protein contains 204 amino acids, with a calculated Mr value of 23,421. Hydropathy analysis shows it to be largely hydrophilic, with a single hydrophobic region. Results of database searches suggest rho GDI is a novel protein, currently with no known homologue. The protein plays an important role in the activation of the superoxide (O2-)-generating NADPH oxidase of phagocytes. This process requires the interaction of membrane-associated cytochrome b559 with 3 cytosolic components: p47-phox, p67-phox and a heterodimer of the small G-protein p21rac1 and rho GDI []. The association of p21rac and GDI inhibits dissociation of GDP from p21rac, thereby maintaining it in an inactive form. The proteins are attached via a lipid tail on p21rac that binds to the hydrophobic region of GDI []. Dissociation of these proteins might be mediated by the release of lipids (e.g., arachidonate and phosphatidate) from membranes through the action of phospholipases []. The lipids may then compete with the lipid tail on p21rac for the hydrophobic pocket on GDI.; GO: 0005094 Rho GDP-dissociation inhibitor activity, 0005737 cytoplasm; PDB: 2JHV_A 2JHU_A 2JI0_A 2JHS_A 1RHO_A 2JHW_A 1FT3_A 2JHZ_B 1QVY_C 1FST_B ....
Probab=26.15 E-value=64 Score=22.72 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=17.3
Q ss_pred cCCCceeEEEEEEEEEEeccceEEEEEEE
Q 034264 33 KQNSNLQFVKVVSAKQQVVSGTLYDITLE 61 (100)
Q Consensus 33 ~~~~~~~~~~V~~a~~QVVaG~nY~i~v~ 61 (100)
+.+..|.+.-..+++.++|+|..|.-++.
T Consensus 104 KEGs~Y~l~i~F~V~~~ivsGL~Y~q~Vk 132 (200)
T PF02115_consen 104 KEGSKYRLKITFKVQHEIVSGLKYVQTVK 132 (200)
T ss_dssp ETT-EEEEEEEEEE-SS-EEEEEEEEEEE
T ss_pred cCCCEEEEEEEEEECCccccCcEEEEEEE
Confidence 34556666666677777788877766653
No 29
>PF11606 AlcCBM31: Family 31 carbohydrate binding protein; InterPro: IPR021016 Beta-1,3-xylan is a homopolymer of b-1,3-linked D-xylose and is a polysaccharide peculiar to marine algae. Beta-1,3-xylanase is a beta-1,3-xylan hydrolyzing enzyme [].; GO: 0033905 xylan endo-1,3-beta-xylosidase activity; PDB: 2COV_F.
Probab=23.38 E-value=1.9e+02 Score=17.76 Aligned_cols=13 Identities=31% Similarity=0.567 Sum_probs=10.9
Q ss_pred cceEEEEEEEEee
Q 034264 52 SGTLYDITLEAVE 64 (100)
Q Consensus 52 aG~nY~i~v~~~~ 64 (100)
=|..|+|+|++.|
T Consensus 60 LGqtY~i~FKVeD 72 (93)
T PF11606_consen 60 LGQTYKITFKVED 72 (93)
T ss_dssp TT-EEEEEEEEEE
T ss_pred cCcceeEEEEEec
Confidence 5889999999998
No 30
>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional
Probab=22.96 E-value=2.6e+02 Score=20.61 Aligned_cols=41 Identities=22% Similarity=0.431 Sum_probs=28.6
Q ss_pred EEEEEEEEEeccceE-EEEEEEEe--e---------------CCeeEEEEEEEEEecCC
Q 034264 41 VKVVSAKQQVVSGTL-YDITLEAV--E---------------GGQKKLFEAKVWEKPWM 81 (100)
Q Consensus 41 ~~V~~a~~QVVaG~n-Y~i~v~~~--~---------------~~~~~~c~~~V~~~pW~ 81 (100)
.++++++...+.|.+ |.+++.+. + +|+.-.|.+..-++-|.
T Consensus 185 a~Lleas~re~dGk~YY~lE~~~~~ad~d~~~RH~LatatV~~GkLYtl~aqa~EkRW~ 243 (260)
T PLN00042 185 AAVLESSTQEVGGKPYYYLSVLTRTADGDEGGKHQLITATVSDGKLYICKAQAGDKRWF 243 (260)
T ss_pred eeEEEeeeEEeCCeEEEEEEEEEecCCCCCCCceEEEEEEEECCEEEEEEecCchhhhh
Confidence 478899999999976 67777653 1 35555666666666775
No 31
>cd00153 RalGDS_RA Ubiquitin domain of RalGDS-like factor (RLF) and related proteins. This CD represents the C-terminal Ras-associating (RA) domain of three closely related guanine-nucleotide exchange factors (GEF's), Ral guanine nucleotide dissociation stimulator (RalGDS), RalGDS-like (RGL), and RalGDS-like factor (RLF). The RalGDS proteins are downstream effectors of the Ras-related protein Ral, providing a mechanism for Ral activation by extracellular signals. The RA domain is structurally similar to ubiquitin and exists in a number of other signalling proteins including AF6, rasfadin, SNX27, CYR1, and STE50.
Probab=22.75 E-value=1.4e+02 Score=18.28 Aligned_cols=28 Identities=21% Similarity=0.425 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhhhcCC--CceeEEEEEEE
Q 034264 19 IVNLARFAVDEHNKKQN--SNLQFVKVVSA 46 (100)
Q Consensus 19 v~~~a~~Av~~~n~~~~--~~~~~~~V~~a 46 (100)
--.+.+.|+.++|-+.. +.|+++.++.-
T Consensus 29 tP~VI~ral~Khnl~~~~~~~Y~L~Q~Lp~ 58 (87)
T cd00153 29 APQVIRRAMEKHNLESEVAEDYELVQVLPG 58 (87)
T ss_pred CHHHHHHHHHHhCCCcCCccceEEEEEcCC
Confidence 34678999999998843 57999877763
No 32
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=22.45 E-value=48 Score=24.73 Aligned_cols=25 Identities=32% Similarity=0.659 Sum_probs=18.2
Q ss_pred EEEEEEEEecCCCc---------eeeEEEEecCCC
Q 034264 70 LFEAKVWEKPWMQF---------KELKEFNTVAQS 95 (100)
Q Consensus 70 ~c~~~V~~~pW~~~---------~~l~~f~~~~~~ 95 (100)
.-+++||. ||.++ .+-..|.|+..+
T Consensus 241 ~pDaVVWN-PW~kksk~maD~gde~Y~~mlCVe~a 274 (305)
T KOG1594|consen 241 LPDAVVWN-PWDKKSKTMADFGDEDYKHMLCVESA 274 (305)
T ss_pred CCceEEeC-hhHhhhhhhhhccccccceeEEeccc
Confidence 45688984 99865 466778888766
No 33
>PF14730 DUF4468: Domain of unknown function (DUF4468) with TBP-like fold
Probab=20.84 E-value=2e+02 Score=17.06 Aligned_cols=57 Identities=12% Similarity=0.314 Sum_probs=30.7
Q ss_pred CCcHHHHHHHHHHHHHhhhcCCCceeE------EEEEEEEEEec----------cceEEEEEEEEeeCCeeEEEEEEE
Q 034264 14 ANNQEIVNLARFAVDEHNKKQNSNLQF------VKVVSAKQQVV----------SGTLYDITLEAVEGGQKKLFEAKV 75 (100)
Q Consensus 14 ~~d~~v~~~a~~Av~~~n~~~~~~~~~------~~V~~a~~QVV----------aG~nY~i~v~~~~~~~~~~c~~~V 75 (100)
..+.-+..+..++...|+.. ++...+ .-+.++...++ .-++|.|.++..|| .|.+++
T Consensus 11 sk~~ly~~~~~W~~~~~~~~-~s~I~~~dke~g~I~~~g~~~~~f~~~~ls~~~~~i~y~l~i~~kDg----k~r~~~ 83 (91)
T PF14730_consen 11 SKDQLYDRAKKWLAKNFKSA-NSVIQYSDKEEGTIIAKGEEWLVFSSSFLSLDRTRINYTLIIDCKDG----KYRLTI 83 (91)
T ss_pred CHHHHHHHHHHHHHHhcccc-cceEEEEcCCCCEEEEEEEEEEEEccccccccceEEEEEEEEEEECC----EEEEEE
Confidence 34556677777777777763 333322 22223322222 11467788888887 455444
No 34
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=20.72 E-value=94 Score=24.56 Aligned_cols=45 Identities=27% Similarity=0.432 Sum_probs=25.2
Q ss_pred EEEEeccceEEEEEEEEeeC-----CeeEEEE----EEEEEe-cCCCceeeEEEE
Q 034264 46 AKQQVVSGTLYDITLEAVEG-----GQKKLFE----AKVWEK-PWMQFKELKEFN 90 (100)
Q Consensus 46 a~~QVVaG~nY~i~v~~~~~-----~~~~~c~----~~V~~~-pW~~~~~l~~f~ 90 (100)
+++.++||.||+|.=.=-.| +....|. +.|... |.+...+|+-|.
T Consensus 510 ~rsrm~ag~~~yivgrdpagm~~pe~~~dlye~thgakvlsmapgl~~l~i~pfr 564 (627)
T KOG4238|consen 510 CRSRMIAGANFYIVGRDPAGMPHPETKKDLYEPTHGAKVLSMAPGLTSLEIIPFR 564 (627)
T ss_pred HHHHhhccCeeEEeccCcCCCCCCCCCccccccCCCceeeeecCCcceeeeeeee
Confidence 45678999998774221101 2222443 556665 666666666654
No 35
>PF13149 DUF3988: Protein of unknown function (DUF3988); PDB: 4EPS_A 3T2L_A 3UFI_A 4DGU_B 3SY6_B.
Probab=20.55 E-value=2.8e+02 Score=19.13 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=17.1
Q ss_pred cceEEEEEEEEeeCCeeEEEEEEEEEecCC
Q 034264 52 SGTLYDITLEAVEGGQKKLFEAKVWEKPWM 81 (100)
Q Consensus 52 aG~nY~i~v~~~~~~~~~~c~~~V~~~pW~ 81 (100)
+|..|.++|.+.++ ....-.+.| .+|.
T Consensus 257 ~G~~y~~~lt~~~~-~~~~~~~sv--~~W~ 283 (284)
T PF13149_consen 257 AGKHYTYTLTVSGD-GIIIGTVSV--EDWD 283 (284)
T ss_dssp TT-EEEEEEEEESS-EEEEEEEEE--ESSS
T ss_pred CCeEEEEEEEEcCC-eeEECccEe--CCcC
Confidence 89999999988887 223333333 6775
Done!