Query 034267
Match_columns 100
No_of_seqs 75 out of 77
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 11:36:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034267.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034267hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02453 complex I subunit 100.0 3.5E-54 7.6E-59 304.9 8.6 96 2-99 7-105 (105)
2 PF10183 ESSS: ESSS subunit of 100.0 3.8E-31 8.3E-36 183.5 7.1 76 21-96 22-100 (105)
3 PF14990 DUF4516: Domain of un 83.4 1.4 3.1E-05 27.6 2.8 12 72-83 28-39 (47)
4 KOG4808 Uncharacterized conser 60.2 13 0.00027 28.4 3.4 54 46-99 62-123 (151)
5 TIGR01583 formate-DH-gamm form 59.5 14 0.0003 27.5 3.5 32 34-66 87-118 (204)
6 KOG3251 Golgi SNAP receptor co 53.2 5.9 0.00013 31.5 0.7 28 48-76 184-211 (213)
7 PF14962 AIF-MLS: Mitochondria 49.8 5.4 0.00012 31.0 0.0 45 32-83 27-71 (180)
8 PF12955 DUF3844: Domain of un 47.1 21 0.00046 25.4 2.7 28 46-73 55-82 (103)
9 PF06697 DUF1191: Protein of u 45.0 13 0.00028 30.5 1.5 29 45-73 201-229 (278)
10 PF14316 DUF4381: Domain of un 43.3 18 0.0004 25.6 1.9 11 86-96 50-60 (146)
11 PRK10077 xylE D-xylose transpo 41.4 49 0.0011 25.8 4.1 40 53-94 433-472 (479)
12 TIGR02332 HpaX 4-hydroxyphenyl 38.0 41 0.0009 26.5 3.3 29 53-81 165-193 (412)
13 PF05814 DUF843: Baculovirus p 37.9 69 0.0015 22.3 4.0 19 74-92 44-62 (83)
14 PF05360 YiaAB: yiaA/B two hel 37.6 48 0.001 20.4 2.9 23 56-78 2-24 (53)
15 TIGR00880 2_A_01_02 Multidrug 37.5 57 0.0012 19.8 3.3 29 52-80 113-141 (141)
16 TIGR01606 holin_BlyA holin, Bl 35.3 30 0.00064 23.1 1.8 20 60-79 20-39 (63)
17 COG4980 GvpP Gas vesicle prote 32.8 66 0.0014 23.3 3.4 27 59-85 8-34 (115)
18 PF11027 DUF2615: Protein of u 32.7 83 0.0018 22.4 3.8 23 57-79 53-75 (103)
19 PF07584 BatA: Aerotolerance r 31.9 66 0.0014 20.5 3.0 42 54-95 3-45 (77)
20 KOG1639 Steroid reductase requ 30.3 41 0.00088 28.2 2.2 60 32-96 223-282 (297)
21 PF07177 Neuralized: Neuralize 29.7 20 0.00043 23.1 0.3 17 34-50 29-45 (69)
22 PRK11677 hypothetical protein; 29.5 1.4E+02 0.0031 21.8 4.8 25 55-80 3-27 (134)
23 PF05102 Holin_BlyA: holin, Bl 29.4 42 0.00091 22.2 1.7 19 61-79 21-39 (61)
24 PRK10639 formate dehydrogenase 28.8 69 0.0015 24.0 3.0 31 35-68 93-123 (211)
25 PF08285 DPM3: Dolichol-phosph 27.8 1.6E+02 0.0034 20.2 4.4 45 54-99 37-89 (91)
26 PHA02691 hypothetical protein; 27.2 1.2E+02 0.0026 22.2 3.9 26 58-83 4-29 (110)
27 PF15061 DUF4538: Domain of un 26.6 1.8E+02 0.0039 19.0 4.3 28 72-99 23-52 (58)
28 PF04868 PDE6_gamma: Retinal c 26.4 36 0.00078 23.7 1.1 24 31-54 26-49 (83)
29 COG4839 FtsL Protein required 26.3 66 0.0014 23.7 2.5 24 54-77 35-58 (120)
30 PRK07353 F0F1 ATP synthase sub 26.1 62 0.0013 22.3 2.2 26 54-79 5-30 (140)
31 TIGR02106 cyd_oper_ybgT cyd op 25.1 75 0.0016 18.3 2.0 13 58-70 1-13 (30)
32 PF10346 Con-6: Conidiation pr 25.0 60 0.0013 19.3 1.7 22 75-98 14-35 (36)
33 PF06181 DUF989: Protein of un 24.9 81 0.0018 26.5 3.0 31 48-80 77-107 (300)
34 COG2864 FdnI Cytochrome b subu 24.6 1.7E+02 0.0037 23.4 4.7 31 56-86 114-150 (218)
35 PRK11874 petL cytochrome b6-f 24.5 97 0.0021 17.8 2.5 19 58-76 4-22 (30)
36 PF08173 YbgT_YccB: Membrane b 24.3 80 0.0017 17.9 2.0 13 58-70 1-13 (28)
37 PF04550 Phage_holin_2: Phage 24.2 78 0.0017 22.3 2.4 22 61-83 41-62 (89)
38 KOG1314 DHHC-type Zn-finger pr 24.0 1.7E+02 0.0036 25.7 4.8 21 77-97 216-236 (414)
39 PRK09705 cynX putative cyanate 23.5 84 0.0018 24.4 2.8 35 54-88 358-392 (393)
40 PF06305 DUF1049: Protein of u 23.5 1.2E+02 0.0026 18.3 3.0 12 57-68 18-29 (68)
41 PTZ00428 60S ribosomal protein 23.1 47 0.001 28.5 1.4 32 7-42 71-104 (381)
42 KOG2533 Permease of the major 22.7 50 0.0011 28.4 1.5 42 50-91 200-241 (495)
43 TIGR00782 ccoP cytochrome c ox 22.6 1.8E+02 0.0038 22.9 4.4 24 54-78 29-52 (285)
44 KOG2532 Permease of the major 22.1 1.2E+02 0.0025 25.8 3.5 52 45-96 183-236 (466)
45 PF10815 ComZ: ComZ; InterPro 21.8 72 0.0016 20.8 1.7 15 86-100 13-27 (56)
46 PF06129 Chordopox_G3: Chordop 21.6 1.1E+02 0.0023 22.2 2.7 26 58-83 3-28 (109)
47 PRK14749 hypothetical protein; 21.3 94 0.002 18.0 2.0 13 58-70 1-13 (30)
48 KOG0624 dsRNA-activated protei 20.8 81 0.0018 28.0 2.4 16 14-29 472-487 (504)
49 TIGR02209 ftsL_broad cell divi 20.8 1.1E+02 0.0023 19.3 2.4 20 57-76 2-21 (85)
50 PF14715 FixP_N: N-terminal do 20.7 1.1E+02 0.0024 19.0 2.4 11 60-70 25-35 (51)
51 PRK10179 formate dehydrogenase 20.4 1.2E+02 0.0026 23.1 3.0 33 36-70 94-127 (217)
52 PHA03066 Hypothetical protein; 20.1 2.2E+02 0.0047 20.8 4.1 27 58-84 4-30 (110)
No 1
>PLN02453 complex I subunit
Probab=100.00 E-value=3.5e-54 Score=304.88 Aligned_cols=96 Identities=74% Similarity=1.312 Sum_probs=92.0
Q ss_pred chHHHHHHhh---hhhcCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCccccchhHHHHHHHHHHHHHhHhhcCC
Q 034267 2 SFNSMLRQRL---FARFGSTHAGPSRWTTPGHQEKPNGYLFNRTPPPPGQSRKWEDWELPCYITSFLTVVILGVGLNAKP 78 (100)
Q Consensus 2 ~~~~~lr~~~---~r~rGg~~~g~~r~~s~g~~e~P~G~LFge~P~~PGqkrk~E~WE~p~Y~~~~g~~v~l~v~l~~KP 78 (100)
.+++|||+|+ .|+|||| |+++|.+|||+|+||||||||+||+|||+|||||||+|||++||+++||++|+|+|||
T Consensus 7 ~a~~~lr~~~~~~~r~rggg--~~g~w~~pG~~e~p~G~LFg~~Pp~PGq~rkwEdWE~p~Y~~~~~t~vil~Vgl~aKP 84 (105)
T PLN02453 7 AASRMLRGRQRSQLRSRGAG--GPGRWFAPGHEEGPNGYLFNETPPPPGQSRKWEDWELPCYITSFLTIVILGVGLNAKP 84 (105)
T ss_pred HHHHHHHHHHhhhhccccCC--CCCCCcCCCccCCCCeeeeCCCCCCCCcccccccchhhHHHHHHHHHHHHheeeeccC
Confidence 4679999999 5899987 8889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhccC
Q 034267 79 DLTIETWAHQKALERLQMEKS 99 (100)
Q Consensus 79 DtsIqtWA~~eA~~RLe~e~~ 99 (100)
|||||||||+||++|||+|++
T Consensus 85 DtsIqtWA~~eA~~RLe~e~~ 105 (105)
T PLN02453 85 DTRIETWAHQKALERLEAEEL 105 (105)
T ss_pred CCcHHHHHHHHHHHHHHhccC
Confidence 999999999999999999984
No 2
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=99.97 E-value=3.8e-31 Score=183.53 Aligned_cols=76 Identities=43% Similarity=0.864 Sum_probs=67.9
Q ss_pred CCCCCCCCC---CCCCCCccccccCCCCCCCCCCccccchhHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHhh
Q 034267 21 GPSRWTTPG---HQEKPNGYLFNRTPPPPGQSRKWEDWELPCYITSFLTVVILGVGLNAKPDLTIETWAHQKALERLQM 96 (100)
Q Consensus 21 g~~r~~s~g---~~e~P~G~LFge~P~~PGqkrk~E~WE~p~Y~~~~g~~v~l~v~l~~KPDtsIqtWA~~eA~~RLe~ 96 (100)
..++...++ ++++|||+||+++|++|||+++||+||++||++|++++|+++|+++|||||||++||++||.+||+.
T Consensus 22 ~~a~~~~~~~~~~~~~p~g~l~~~~p~~~G~~~d~e~we~~~f~~~~~~~v~~~~~~~y~PD~~i~~WA~rEA~~rl~~ 100 (105)
T PF10183_consen 22 SAARRGVAGHGEHYDPPNGWLFGKNPPSPGEKRDWEGWELPFFFGFSGSLVFGGVFLAYKPDTSIQTWARREAYRRLER 100 (105)
T ss_pred cccccccCCCCCcCCCCCccccCCCCCcCCCcchHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhH
Confidence 444555444 4559999999999999999999999999999999999999999999999999999999999999543
No 3
>PF14990 DUF4516: Domain of unknown function (DUF4516)
Probab=83.43 E-value=1.4 Score=27.62 Aligned_cols=12 Identities=58% Similarity=0.542 Sum_probs=9.5
Q ss_pred hHhhcCCCCCHH
Q 034267 72 VGLNAKPDLTIE 83 (100)
Q Consensus 72 v~l~~KPDtsIq 83 (100)
|=++||||.||-
T Consensus 28 VH~~ykPdltiP 39 (47)
T PF14990_consen 28 VHNIYKPDLTIP 39 (47)
T ss_pred HHHHhCccCCCC
Confidence 446799999984
No 4
>KOG4808 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.22 E-value=13 Score=28.42 Aligned_cols=54 Identities=17% Similarity=0.078 Sum_probs=33.0
Q ss_pred CCCCCCccccchhHHHHHHHHHHHHH----hHhhcCCCCC-HHHHHHHHHHHH---HhhccC
Q 034267 46 PGQSRKWEDWELPCYITSFLTVVILG----VGLNAKPDLT-IETWAHQKALER---LQMEKS 99 (100)
Q Consensus 46 PGqkrk~E~WE~p~Y~~~~g~~v~l~----v~l~~KPDts-IqtWA~~eA~~R---Le~e~~ 99 (100)
|--+-+.+||-++=--+|..-.|+.+ ....|.||+. ...||+.||... -|+.|+
T Consensus 62 ~d~~De~~d~k~~~s~~f~~~tvl~vW~~s~~~aylPD~~~~ReWA~rea~levkrRE~agl 123 (151)
T KOG4808|consen 62 PDPEDENKDEKNPDSHAFDKDTVLDVWNTSTFVAYLPDYRMMREWALREAELEVKRREAAGL 123 (151)
T ss_pred CChhhhhhhhhCcccceeeechHhhhhcceeeeeecCCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33345777888763333322222222 3456999999 999999999644 455444
No 5
>TIGR01583 formate-DH-gamm formate dehydrogenase, gamma subunit. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model.
Probab=59.52 E-value=14 Score=27.49 Aligned_cols=32 Identities=25% Similarity=0.365 Sum_probs=22.3
Q ss_pred CCccccccCCCCCCCCCCccccchhHHHHHHHH
Q 034267 34 PNGYLFNRTPPPPGQSRKWEDWELPCYITSFLT 66 (100)
Q Consensus 34 P~G~LFge~P~~PGqkrk~E~WE~p~Y~~~~g~ 66 (100)
-.+|+|+++.|.|- ..|.-..+...|+.++..
T Consensus 87 ~~~y~~~~~~~~p~-~~kyN~~Qk~~y~~i~~~ 118 (204)
T TIGR01583 87 VGGYLSKIKRPVPS-AGKYNAGQKSWYWILVLG 118 (204)
T ss_pred hchHhcCCCCCCCC-CCCCChHHHHHHHHHHHH
Confidence 45789998654442 346788889999877653
No 6
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.21 E-value=5.9 Score=31.53 Aligned_cols=28 Identities=29% Similarity=0.140 Sum_probs=21.0
Q ss_pred CCCCccccchhHHHHHHHHHHHHHhHhhc
Q 034267 48 QSRKWEDWELPCYITSFLTVVILGVGLNA 76 (100)
Q Consensus 48 qkrk~E~WE~p~Y~~~~g~~v~l~v~l~~ 76 (100)
++|..|||= +||+|.+.++|++..+|.|
T Consensus 184 eRR~~~Dk~-iF~~G~i~~~v~~yl~~~w 211 (213)
T KOG3251|consen 184 ERRVREDKI-IFYGGVILTLVIMYLFYRW 211 (213)
T ss_pred HHHHHhhHH-HHHHHHHHHHHHHHHHHHH
Confidence 368888985 4888888888877776654
No 7
>PF14962 AIF-MLS: Mitochondria Localisation Sequence; PDB: 1M6I_A.
Probab=49.79 E-value=5.4 Score=31.01 Aligned_cols=45 Identities=16% Similarity=-0.031 Sum_probs=0.0
Q ss_pred CCCCccccccCCCCCCCCCCccccchhHHHHHHHHHHHHHhHhhcCCCCCHH
Q 034267 32 EKPNGYLFNRTPPPPGQSRKWEDWELPCYITSFLTVVILGVGLNAKPDLTIE 83 (100)
Q Consensus 32 e~P~G~LFge~P~~PGqkrk~E~WE~p~Y~~~~g~~v~l~v~l~~KPDtsIq 83 (100)
|.|.-++-.-. .||.+. +++.|+.++|..++.+..|.||=-+|=|
T Consensus 27 na~~R~msS~g--~pG~sG-----sN~~Y~l~vG~t~~gag~YaYkTv~~dq 71 (180)
T PF14962_consen 27 NAPLRQMSSSG--VPGGSG-----SNMVYYLVVGVTVSGAGYYAYKTVKSDQ 71 (180)
T ss_dssp ----------------------------------------------------
T ss_pred CchhHHHhcCC--CCCCCC-----ceEEEEEEECeEEEeeEEEEEEeecchh
Confidence 44555554433 577643 6889999999999999999999665433
No 8
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=47.05 E-value=21 Score=25.41 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=22.0
Q ss_pred CCCCCCccccchhHHHHHHHHHHHHHhH
Q 034267 46 PGQSRKWEDWELPCYITSFLTVVILGVG 73 (100)
Q Consensus 46 PGqkrk~E~WE~p~Y~~~~g~~v~l~v~ 73 (100)
-|...+++|.--+|++.++.++++++++
T Consensus 55 ~G~aCqKkDvS~~F~L~~~~ti~lv~~~ 82 (103)
T PF12955_consen 55 GGPACQKKDVSVPFWLFAGFTIALVVLV 82 (103)
T ss_pred cccccccccccchhhHHHHHHHHHHHHH
Confidence 5778899999999998887777665543
No 9
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=45.00 E-value=13 Score=30.54 Aligned_cols=29 Identities=28% Similarity=0.470 Sum_probs=15.7
Q ss_pred CCCCCCCccccchhHHHHHHHHHHHHHhH
Q 034267 45 PPGQSRKWEDWELPCYITSFLTVVILGVG 73 (100)
Q Consensus 45 ~PGqkrk~E~WE~p~Y~~~~g~~v~l~v~ 73 (100)
++++..++..|-+.+-+++.+++++|++.
T Consensus 201 ~~~~~~~~~~~~W~iv~g~~~G~~~L~ll 229 (278)
T PF06697_consen 201 PPGAPPRKRSWWWKIVVGVVGGVVLLGLL 229 (278)
T ss_pred CcccccCCcceeEEEEEEehHHHHHHHHH
Confidence 34444455556555555556666555544
No 10
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=43.32 E-value=18 Score=25.64 Aligned_cols=11 Identities=27% Similarity=0.338 Sum_probs=7.2
Q ss_pred HHHHHHHHHhh
Q 034267 86 AHQKALERLQM 96 (100)
Q Consensus 86 A~~eA~~RLe~ 96 (100)
.+.+|++.|.+
T Consensus 50 yrr~Al~~L~~ 60 (146)
T PF14316_consen 50 YRREALRELAQ 60 (146)
T ss_pred HHHHHHHHHHH
Confidence 45677777754
No 11
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=41.44 E-value=49 Score=25.80 Aligned_cols=40 Identities=10% Similarity=-0.031 Sum_probs=26.1
Q ss_pred cccchhHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHH
Q 034267 53 EDWELPCYITSFLTVVILGVGLNAKPDLTIETWAHQKALERL 94 (100)
Q Consensus 53 E~WE~p~Y~~~~g~~v~l~v~l~~KPDtsIqtWA~~eA~~RL 94 (100)
-+|...|++.....++.+.+.+.+.|+|+=++ .+|..+..
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~--~~~~~~~~ 472 (479)
T PRK10077 433 FHNGFSYWIYGCMGVLAALFMWKFVPETKGKT--LEEMEALW 472 (479)
T ss_pred ccCccHHHHHHHHHHHHHHHHHhccccCCCCC--HHHHHHHH
Confidence 35667777776666776777777888877554 34554443
No 12
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=37.99 E-value=41 Score=26.48 Aligned_cols=29 Identities=14% Similarity=0.201 Sum_probs=21.1
Q ss_pred cccchhHHHHHHHHHHHHHhHhhcCCCCC
Q 034267 53 EDWELPCYITSFLTVVILGVGLNAKPDLT 81 (100)
Q Consensus 53 E~WE~p~Y~~~~g~~v~l~v~l~~KPDts 81 (100)
.+|...|++....+++++.+.+.+-||+.
T Consensus 165 ~gwr~~f~~~~~~~l~~~~~~~~~~~~~p 193 (412)
T TIGR02332 165 KGWQWLFLLEGFPSVILGVMTWFWLDDSP 193 (412)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 47999999877777666666666667654
No 13
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=37.92 E-value=69 Score=22.29 Aligned_cols=19 Identities=21% Similarity=0.134 Sum_probs=13.6
Q ss_pred hhcCCCCCHHHHHHHHHHH
Q 034267 74 LNAKPDLTIETWAHQKALE 92 (100)
Q Consensus 74 l~~KPDtsIqtWA~~eA~~ 92 (100)
|+-|||.+.|-=..++++.
T Consensus 44 yy~kteS~~~dL~t~k~K~ 62 (83)
T PF05814_consen 44 YYIKTESTPQDLQTEKAKS 62 (83)
T ss_pred HHcCCCCcHHHHhhhhhhh
Confidence 4559999887776666654
No 14
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=37.64 E-value=48 Score=20.44 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=18.7
Q ss_pred chhHHHHHHHHHHHHHhHhhcCC
Q 034267 56 ELPCYITSFLTVVILGVGLNAKP 78 (100)
Q Consensus 56 E~p~Y~~~~g~~v~l~v~l~~KP 78 (100)
-..+++.|+.++++..||+.+-|
T Consensus 2 ~~~~~~~f~i~~~~~~iGl~~~~ 24 (53)
T PF05360_consen 2 VGQSWISFGISIVLMLIGLWNAP 24 (53)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCC
Confidence 34578889999999999888666
No 15
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=37.52 E-value=57 Score=19.81 Aligned_cols=29 Identities=14% Similarity=0.288 Sum_probs=18.5
Q ss_pred ccccchhHHHHHHHHHHHHHhHhhcCCCC
Q 034267 52 WEDWELPCYITSFLTVVILGVGLNAKPDL 80 (100)
Q Consensus 52 ~E~WE~p~Y~~~~g~~v~l~v~l~~KPDt 80 (100)
..+|...+++.....++.+.+.+...|++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 113 FLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 44677777777666666555565556653
No 16
>TIGR01606 holin_BlyA holin, BlyA family. This family represents a BlyA, a small holin found in Borrelia circular plasmids that prove to be temperate phage. This protein was previously proposed to be an hemolysin. BlyA is small (67 residues) and contains two largely hydrophobic helices and a highly charged C-terminus.
Probab=35.25 E-value=30 Score=23.08 Aligned_cols=20 Identities=35% Similarity=0.607 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhHhhcCCC
Q 034267 60 YITSFLTVVILGVGLNAKPD 79 (100)
Q Consensus 60 Y~~~~g~~v~l~v~l~~KPD 79 (100)
-++.|.+++++.+++.+||-
T Consensus 20 ~lmifi~~~IL~~~l~~kP~ 39 (63)
T TIGR01606 20 KLMIFISIFILSLGLIFKPV 39 (63)
T ss_pred HHHHHHHHHHHHHHHHhhHH
Confidence 35678899999999999995
No 17
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=32.82 E-value=66 Score=23.34 Aligned_cols=27 Identities=11% Similarity=-0.055 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhHhhcCCCCCHHHH
Q 034267 59 CYITSFLTVVILGVGLNAKPDLTIETW 85 (100)
Q Consensus 59 ~Y~~~~g~~v~l~v~l~~KPDtsIqtW 85 (100)
+|-.+.|++|.++++|.+-|+..-++-
T Consensus 8 l~G~liGgiiGa~aaLL~AP~sGkelR 34 (115)
T COG4980 8 LFGILIGGIIGAAAALLFAPKSGKELR 34 (115)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccHHHH
Confidence 444566777778889999999988775
No 18
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=32.75 E-value=83 Score=22.40 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHhHhhcCCC
Q 034267 57 LPCYITSFLTVVILGVGLNAKPD 79 (100)
Q Consensus 57 ~p~Y~~~~g~~v~l~v~l~~KPD 79 (100)
..+++.+++-+|++.+.|.++|.
T Consensus 53 ~~~~~~~~~w~~~A~~ly~~RP~ 75 (103)
T PF11027_consen 53 NSMFMMMMLWMVLAMALYLLRPS 75 (103)
T ss_pred ccHHHHHHHHHHHHHHHHHcCch
Confidence 44566667788888899999997
No 19
>PF07584 BatA: Aerotolerance regulator N-terminal; InterPro: IPR024163 The Batl operon appears to be important in pathogenicity and aerotolerance. BatA ensures bacterial survival in the early stages of the infection process, when the infected sites are aerobic, and is produced under conditions of oxidative stress []. Proteins produced by the Batl operon share a highly-conserved sequence at their N terminus and the full length proteins carry multiple membrane-spanning domains []. This entry represents the conserved N-terminal domain, which is also found in some uncharacterised proteins.
Probab=31.88 E-value=66 Score=20.46 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=23.6
Q ss_pred ccchhHHHHHHHHHHH-HHhHhhcCCCCCHHHHHHHHHHHHHh
Q 034267 54 DWELPCYITSFLTVVI-LGVGLNAKPDLTIETWAHQKALERLQ 95 (100)
Q Consensus 54 ~WE~p~Y~~~~g~~v~-l~v~l~~KPDtsIqtWA~~eA~~RLe 95 (100)
..++|+|....+.+.+ +.+.|..+....-..++.-+..+++.
T Consensus 3 ~F~~P~~L~~Llllp~~i~~~~~~~~~~~~~~fs~~~~l~~~~ 45 (77)
T PF07584_consen 3 SFLNPWYLWLLLLLPLPIIIHYFLRRRRRRVRFSSLRLLKRLP 45 (77)
T ss_pred chHhHHHHHHHHHHHHHHHHHHHhcccCCCcccCCHHHHHHhC
Confidence 3578888877776666 44555555553333554444444443
No 20
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=30.32 E-value=41 Score=28.15 Aligned_cols=60 Identities=18% Similarity=0.224 Sum_probs=37.1
Q ss_pred CCCCccccccCCCCCCCCCCccccchhHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHhh
Q 034267 32 EKPNGYLFNRTPPPPGQSRKWEDWELPCYITSFLTVVILGVGLNAKPDLTIETWAHQKALERLQM 96 (100)
Q Consensus 32 e~P~G~LFge~P~~PGqkrk~E~WE~p~Y~~~~g~~v~l~v~l~~KPDtsIqtWA~~eA~~RLe~ 96 (100)
--|.|+|||-..=| -+--|-|.++++-.+.=++ ++++..+---+-+..||..+-++=|++
T Consensus 223 p~~~g~lFnlvscp---NYt~Ev~sWi~F~i~tq~l--~a~lFl~vg~aqMtiWA~~Kh~~ylKe 282 (297)
T KOG1639|consen 223 PLPDGFLFNLVSCP---NYTYEVGSWIGFAIMTQCL--AAYLFLTVGAAQMTIWAKGKHRRYLKE 282 (297)
T ss_pred ecCCccEEEEEecC---CcceehHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhHhHhhh
Confidence 35789999975322 4667888888876655442 222222222345778999887765543
No 21
>PF07177 Neuralized: Neuralized; InterPro: IPR006573 NEUZ is a domain of unknown function found in neuralized proteins, i.e. proteins involved in the specification of the neuroblast during cellular differentiation. ; PDB: 2YUE_A 2E63_A.
Probab=29.74 E-value=20 Score=23.14 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=11.2
Q ss_pred CCccccccCCCCCCCCC
Q 034267 34 PNGYLFNRTPPPPGQSR 50 (100)
Q Consensus 34 P~G~LFge~P~~PGqkr 50 (100)
-+|..|...|..+||+-
T Consensus 29 ~~giVFS~rPl~~~E~~ 45 (69)
T PF07177_consen 29 NNGIVFSSRPLRIGEKF 45 (69)
T ss_dssp SS-EEEESS-B-TT-EE
T ss_pred CceEEEecCCccCCCEE
Confidence 48999999999999963
No 22
>PRK11677 hypothetical protein; Provisional
Probab=29.48 E-value=1.4e+02 Score=21.85 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=15.0
Q ss_pred cchhHHHHHHHHHHHHHhHhhcCCCC
Q 034267 55 WELPCYITSFLTVVILGVGLNAKPDL 80 (100)
Q Consensus 55 WE~p~Y~~~~g~~v~l~v~l~~KPDt 80 (100)
|.. +-++++.++||..++.-+....
T Consensus 3 W~~-a~i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 3 WEY-ALIGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred HHH-HHHHHHHHHHHHHHHHhhccch
Confidence 543 4577777777666666664443
No 23
>PF05102 Holin_BlyA: holin, BlyA family; InterPro: IPR006493 This family is represented by BlyA, a small holin found in Borrelia circular plasmids that prove to be temperate phage []. This protein was previously proposed to be a haemolysin. BlyA is small (67 residues) and contains two largely hydrophobic helices and a highly charged C terminus.
Probab=29.35 E-value=42 Score=22.15 Aligned_cols=19 Identities=37% Similarity=0.571 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhHhhcCCC
Q 034267 61 ITSFLTVVILGVGLNAKPD 79 (100)
Q Consensus 61 ~~~~g~~v~l~v~l~~KPD 79 (100)
++.|.+++++++++.+||-
T Consensus 21 ~~ifI~v~IL~~iii~Kp~ 39 (61)
T PF05102_consen 21 LMIFITVLILPLIIIIKPQ 39 (61)
T ss_pred HHHHHHHHHHHHHHHhhHH
Confidence 4567788999999999996
No 24
>PRK10639 formate dehydrogenase-O subunit gamma; Provisional
Probab=28.83 E-value=69 Score=24.02 Aligned_cols=31 Identities=10% Similarity=0.159 Sum_probs=18.7
Q ss_pred CccccccCCCCCCCCCCccccchhHHHHHHHHHH
Q 034267 35 NGYLFNRTPPPPGQSRKWEDWELPCYITSFLTVV 68 (100)
Q Consensus 35 ~G~LFge~P~~PGqkrk~E~WE~p~Y~~~~g~~v 68 (100)
.++++++++|+.| |.-..|...|++++..++
T Consensus 93 ~~~~~~~~~p~~~---kyN~~qk~~y~~~~~~~~ 123 (211)
T PRK10639 93 RKIVVNEEVGDTG---RYNFGQKCVFWAAIIFLV 123 (211)
T ss_pred hhhcCCCCCCCCC---CcCHHHHHHHHHHHHHHH
Confidence 4566666544333 445578888887766443
No 25
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=27.77 E-value=1.6e+02 Score=20.25 Aligned_cols=45 Identities=20% Similarity=0.229 Sum_probs=23.2
Q ss_pred ccchhHHH-HHHHHHHHHHhHhh-----cCCC--CCHHHHHHHHHHHHHhhccC
Q 034267 54 DWELPCYI-TSFLTVVILGVGLN-----AKPD--LTIETWAHQKALERLQMEKS 99 (100)
Q Consensus 54 ~WE~p~Y~-~~~g~~v~l~v~l~-----~KPD--tsIqtWA~~eA~~RLe~e~~ 99 (100)
=|=+|+|. .+||+-.++.|++. =+|+ .++| =--+||++.|.++|+
T Consensus 37 i~~lP~~~Lv~fG~Ysl~~lgy~v~tFnDcpeA~~eL~-~eI~eAK~dLr~kGv 89 (91)
T PF08285_consen 37 IPYLPFYALVSFGCYSLFTLGYGVATFNDCPEAAKELQ-KEIKEAKADLRKKGV 89 (91)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHH-HHHHHHHHHHHHcCC
Confidence 34456665 55666666656543 2232 1111 123567777777775
No 26
>PHA02691 hypothetical protein; Provisional
Probab=27.18 E-value=1.2e+02 Score=22.15 Aligned_cols=26 Identities=12% Similarity=0.119 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHhHhhcCCCCCHH
Q 034267 58 PCYITSFLTVVILGVGLNAKPDLTIE 83 (100)
Q Consensus 58 p~Y~~~~g~~v~l~v~l~~KPDtsIq 83 (100)
..|+.||..++++...++|+|.--+|
T Consensus 4 l~~l~fFi~FL~l~Y~~ny~PTNKlq 29 (110)
T PHA02691 4 ALEVALFAAFLAAAYVLTFLPTNKMQ 29 (110)
T ss_pred HHHHHHHHHHHHHHHHHhhccchhHH
Confidence 37999999999999999999976544
No 27
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=26.63 E-value=1.8e+02 Score=18.95 Aligned_cols=28 Identities=14% Similarity=0.356 Sum_probs=21.6
Q ss_pred hHhhcCCCCCHHHHHHHHHHHH--HhhccC
Q 034267 72 VGLNAKPDLTIETWAHQKALER--LQMEKS 99 (100)
Q Consensus 72 v~l~~KPDtsIqtWA~~eA~~R--Le~e~~ 99 (100)
.-..+.|-+..+..-.+++..| +.+|++
T Consensus 23 Ypi~~~Pmm~~eeYk~~Q~~nR~gI~qedv 52 (58)
T PF15061_consen 23 YPIYFRPMMNPEEYKKEQKINRAGIKQEDV 52 (58)
T ss_pred hhhhcccccChHHHHHHHHHHHhcccHhhc
Confidence 3556899999999888888888 666654
No 28
>PF04868 PDE6_gamma: Retinal cGMP phosphodiesterase, gamma subunit; InterPro: IPR006952 Retinal rod and cone cGMP phosphodiesterases function as the effector enzymes in the vertebrate visual transduction cascade. This family represents the inhibitory gamma subunit [], which is also expressed outside retinal tissues and has been shown to interact with the G-protein-coupled receptor kinase 2 signalling system to regulate the epidermal growth factor- and thrombin-dependent stimulation of p42/p44 mitogen-activated protein kinase in human embryonic kidney 293 cells [].; GO: 0004114 3',5'-cyclic-nucleotide phosphodiesterase activity, 0030553 cGMP binding, 0007601 visual perception; PDB: 2JU4_A 1FQJ_C 3JWR_D.
Probab=26.39 E-value=36 Score=23.72 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=11.9
Q ss_pred CCCCCccccccCCCCCCCCCCccc
Q 034267 31 QEKPNGYLFNRTPPPPGQSRKWED 54 (100)
Q Consensus 31 ~e~P~G~LFge~P~~PGqkrk~E~ 54 (100)
+-+-.-.-|.-|||++|+|.--+|
T Consensus 26 FKQR~tRqFKSKpPKkGvkGf~~~ 49 (83)
T PF04868_consen 26 FKQRQTRQFKSKPPKKGVKGFGDD 49 (83)
T ss_dssp -SS-SSSS--SS-S-SSSS--TTS
T ss_pred hhhhhhhhcccCCCCCcccCccCc
Confidence 334456789999999999876554
No 29
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=26.32 E-value=66 Score=23.73 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=19.0
Q ss_pred ccchhHHHHHHHHHHHHHhHhhcC
Q 034267 54 DWELPCYITSFLTVVILGVGLNAK 77 (100)
Q Consensus 54 ~WE~p~Y~~~~g~~v~l~v~l~~K 77 (100)
.=|..||+++..+++++.|.+.+.
T Consensus 35 ~~EKvly~~~~va~L~vai~ii~~ 58 (120)
T COG4839 35 KVEKVLYTTLAVAALVVAISIISV 58 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999998888887766654
No 30
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=26.11 E-value=62 Score=22.28 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=18.4
Q ss_pred ccchhHHHHHHHHHHHHHhHhhcCCC
Q 034267 54 DWELPCYITSFLTVVILGVGLNAKPD 79 (100)
Q Consensus 54 ~WE~p~Y~~~~g~~v~l~v~l~~KPD 79 (100)
||-.++.+.-|+-++++.--+.|||=
T Consensus 5 ~~t~~~~~i~flil~~ll~~~l~~pi 30 (140)
T PRK07353 5 DATLPLMAVQFVLLTFILNALFYKPV 30 (140)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777666666666667789994
No 31
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=25.06 E-value=75 Score=18.29 Aligned_cols=13 Identities=15% Similarity=0.258 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHH
Q 034267 58 PCYITSFLTVVIL 70 (100)
Q Consensus 58 p~Y~~~~g~~v~l 70 (100)
+||+..++++.++
T Consensus 1 MWYfaWilG~~lA 13 (30)
T TIGR02106 1 MWYFAWILGTLLA 13 (30)
T ss_pred ChhHHHHHHHHHH
Confidence 4676666655443
No 32
>PF10346 Con-6: Conidiation protein 6; InterPro: IPR018824 This entry represents a conserved region found in fungal conidiation-specific protein 6 []. This protein is expressed approximately 6 hours after the induction of development and is induced just prior to major constriction-chain growth [].
Probab=25.03 E-value=60 Score=19.28 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=16.7
Q ss_pred hcCCCCCHHHHHHHHHHHHHhhcc
Q 034267 75 NAKPDLTIETWAHQKALERLQMEK 98 (100)
Q Consensus 75 ~~KPDtsIqtWA~~eA~~RLe~e~ 98 (100)
.--|++|=+ |++.|+++|++.|
T Consensus 14 l~NPnvSee--aK~~A~~~Le~~g 35 (36)
T PF10346_consen 14 LHNPNVSEE--AKQHAREKLEEMG 35 (36)
T ss_pred hcCCCcCHH--HHHHHHHHHHHcc
Confidence 345777755 7899999999865
No 33
>PF06181 DUF989: Protein of unknown function (DUF989); InterPro: IPR010389 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.89 E-value=81 Score=26.45 Aligned_cols=31 Identities=26% Similarity=0.413 Sum_probs=26.0
Q ss_pred CCCCccccchhHHHHHHHHHHHHHhHhhcCCCC
Q 034267 48 QSRKWEDWELPCYITSFLTVVILGVGLNAKPDL 80 (100)
Q Consensus 48 qkrk~E~WE~p~Y~~~~g~~v~l~v~l~~KPDt 80 (100)
+.=.|--||. |.|..-+++++.|.|++.||+
T Consensus 77 ~~LhWfkWes--Y~TWlSGfaLl~~~Yy~~a~~ 107 (300)
T PF06181_consen 77 EHLHWFKWES--YTTWLSGFALLIVVYYFNAEL 107 (300)
T ss_pred ccceeehhHh--HHHHHHHHHHHHHHHHhCCce
Confidence 4556777887 999999999999999998873
No 34
>COG2864 FdnI Cytochrome b subunit of formate dehydrogenase [Energy production and conversion]
Probab=24.64 E-value=1.7e+02 Score=23.37 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=20.6
Q ss_pred chhHHHHHHHHHHHHH---hHh---hcCCCCCHHHHH
Q 034267 56 ELPCYITSFLTVVILG---VGL---NAKPDLTIETWA 86 (100)
Q Consensus 56 E~p~Y~~~~g~~v~l~---v~l---~~KPDtsIqtWA 86 (100)
+..+|++...+++++. +++ ++-|++||.+=+
T Consensus 114 qKl~fw~~~l~~~~l~iTGivmw~~y~~~~~~i~~~r 150 (218)
T COG2864 114 QKLLFWTAILAIVLLLITGIVIWRPYFAPYFSIPLLR 150 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHH
Confidence 4567777666665554 344 788999988644
No 35
>PRK11874 petL cytochrome b6-f complex subunit PetL; Reviewed
Probab=24.54 E-value=97 Score=17.82 Aligned_cols=19 Identities=11% Similarity=0.134 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHhHhhc
Q 034267 58 PCYITSFLTVVILGVGLNA 76 (100)
Q Consensus 58 p~Y~~~~g~~v~l~v~l~~ 76 (100)
.+|+++.+.+..+.+++++
T Consensus 4 v~y~~~l~~~~g~A~gl~f 22 (30)
T PRK11874 4 VFFLGYLGVFTGIALGLYF 22 (30)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4688888877777777764
No 36
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=24.31 E-value=80 Score=17.86 Aligned_cols=13 Identities=23% Similarity=0.344 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHH
Q 034267 58 PCYITSFLTVVIL 70 (100)
Q Consensus 58 p~Y~~~~g~~v~l 70 (100)
+||+..++++.++
T Consensus 1 MWYfaWilG~~lA 13 (28)
T PF08173_consen 1 MWYFAWILGVLLA 13 (28)
T ss_pred ChhHHHHHHHHHH
Confidence 4666666655443
No 37
>PF04550 Phage_holin_2: Phage holin family 2 ; InterPro: IPR007633 This entry represents the Bacteriophage P2, GpY, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=24.17 E-value=78 Score=22.26 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhHhhcCCCCCHH
Q 034267 61 ITSFLTVVILGVGLNAKPDLTIE 83 (100)
Q Consensus 61 ~~~~g~~v~l~v~l~~KPDtsIq 83 (100)
++.+.++ +++++|.+.||.+.-
T Consensus 41 lGs~~S~-~Aga~Li~~Pdl~pl 62 (89)
T PF04550_consen 41 LGSAVSV-VAGAALIQFPDLPPL 62 (89)
T ss_pred HhhHHHH-HHHHHHhcCCCCCHH
Confidence 4455555 488899999998853
No 38
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=23.96 E-value=1.7e+02 Score=25.70 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=18.1
Q ss_pred CCCCCHHHHHHHHHHHHHhhc
Q 034267 77 KPDLTIETWAHQKALERLQME 97 (100)
Q Consensus 77 KPDtsIqtWA~~eA~~RLe~e 97 (100)
+=-|.|++|--++|.-|++..
T Consensus 216 ~nrt~IE~wi~~Ka~~rr~~~ 236 (414)
T KOG1314|consen 216 NNRTGIESWIVEKAMDRREYY 236 (414)
T ss_pred cCCcchHHHHHHHHHHHHHhh
Confidence 556999999999999999753
No 39
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=23.52 E-value=84 Score=24.43 Aligned_cols=35 Identities=11% Similarity=0.257 Sum_probs=29.7
Q ss_pred ccchhHHHHHHHHHHHHHhHhhcCCCCCHHHHHHH
Q 034267 54 DWELPCYITSFLTVVILGVGLNAKPDLTIETWAHQ 88 (100)
Q Consensus 54 ~WE~p~Y~~~~g~~v~l~v~l~~KPDtsIqtWA~~ 88 (100)
+|...||+..+...+++++.+.+-|.|+-+-|-+|
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK09705 358 NYLMDWAFHALCVVGLMIITLRFAPARFPQLWVKE 392 (393)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhccccccchhccc
Confidence 58889999888888888888899999999888654
No 40
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.47 E-value=1.2e+02 Score=18.32 Aligned_cols=12 Identities=17% Similarity=0.365 Sum_probs=5.9
Q ss_pred hhHHHHHHHHHH
Q 034267 57 LPCYITSFLTVV 68 (100)
Q Consensus 57 ~p~Y~~~~g~~v 68 (100)
.|.++-++++++
T Consensus 18 ~pl~l~il~~f~ 29 (68)
T PF06305_consen 18 LPLGLLILIAFL 29 (68)
T ss_pred chHHHHHHHHHH
Confidence 455554444444
No 41
>PTZ00428 60S ribosomal protein L4; Provisional
Probab=23.13 E-value=47 Score=28.52 Aligned_cols=32 Identities=16% Similarity=0.124 Sum_probs=18.2
Q ss_pred HHHhhhhhcCCCCCCCCC--CCCCCCCCCCCccccccC
Q 034267 7 LRQRLFARFGSTHAGPSR--WTTPGHQEKPNGYLFNRT 42 (100)
Q Consensus 7 lr~~~~r~rGg~~~g~~r--~~s~g~~e~P~G~LFge~ 42 (100)
-|+|++|+.|||.+-... + ++- .-.|..|+-+
T Consensus 71 A~aripR~kg~GT~Rs~qGa~-~n~---~rGG~~FgP~ 104 (381)
T PTZ00428 71 AVARIPRVSGGGTHRSGQGAF-GNM---CRGGRMFAPT 104 (381)
T ss_pred CccccccccCCCCCcCccccc-CCc---CCCceEcCCC
Confidence 366789999886442211 1 111 2367788863
No 42
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=22.73 E-value=50 Score=28.42 Aligned_cols=42 Identities=19% Similarity=0.223 Sum_probs=36.3
Q ss_pred CCccccchhHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHH
Q 034267 50 RKWEDWELPCYITSFLTVVILGVGLNAKPDLTIETWAHQKAL 91 (100)
Q Consensus 50 rk~E~WE~p~Y~~~~g~~v~l~v~l~~KPDtsIqtWA~~eA~ 91 (100)
....+|..+|-|..+.++++..|++.+=||---++|=+++-.
T Consensus 200 ~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~e 241 (495)
T KOG2533|consen 200 GGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEE 241 (495)
T ss_pred CCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHH
Confidence 578899999999999999999999999999777777776665
No 43
>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III. This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.
Probab=22.60 E-value=1.8e+02 Score=22.86 Aligned_cols=24 Identities=25% Similarity=0.169 Sum_probs=11.4
Q ss_pred ccchhHHHHHHHHHHHHHhHhhcCC
Q 034267 54 DWELPCYITSFLTVVILGVGLNAKP 78 (100)
Q Consensus 54 ~WE~p~Y~~~~g~~v~l~v~l~~KP 78 (100)
+|=..||++++.+++- .|.|..=|
T Consensus 29 ww~~~f~~~i~~~~~y-~~~yp~~~ 52 (285)
T TIGR00782 29 WWLWTFYATIVWGFGY-LVAYPAWP 52 (285)
T ss_pred HHHHHHHHHHHHHHHH-HHHhcccC
Confidence 3555555555544443 33443444
No 44
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=22.08 E-value=1.2e+02 Score=25.77 Aligned_cols=52 Identities=12% Similarity=0.090 Sum_probs=30.0
Q ss_pred CCCCCCCc-cccchhHHHHHHHHHHHHHh-HhhcCCCCCHHHHHHHHHHHHHhh
Q 034267 45 PPGQSRKW-EDWELPCYITSFLTVVILGV-GLNAKPDLTIETWAHQKALERLQM 96 (100)
Q Consensus 45 ~PGqkrk~-E~WE~p~Y~~~~g~~v~l~v-~l~~KPDtsIqtWA~~eA~~RLe~ 96 (100)
.-|.-.+. -+|+.+||+.-..+++...+ .+.|.-|-+-..+-.++-++.+++
T Consensus 183 ~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~~El~~I~~ 236 (466)
T KOG2532|consen 183 VSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNISEKELKYIEK 236 (466)
T ss_pred hHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHh
Confidence 34444555 78999999887777766555 233442222244545555555544
No 45
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=21.80 E-value=72 Score=20.82 Aligned_cols=15 Identities=27% Similarity=0.149 Sum_probs=12.8
Q ss_pred HHHHHHHHHhhccCC
Q 034267 86 AHQKALERLQMEKSE 100 (100)
Q Consensus 86 A~~eA~~RLe~e~~~ 100 (100)
...||++.|+..|||
T Consensus 13 ~lPEak~~L~k~GIe 27 (56)
T PF10815_consen 13 YLPEAKEELDKKGIE 27 (56)
T ss_pred HhHHHHHHHHHcCcc
Confidence 456899999999986
No 46
>PF06129 Chordopox_G3: Chordopoxvirus G3 protein; InterPro: IPR010367 This family consists of several poxvirus specific G3 proteins. The function of this family is unknown.
Probab=21.64 E-value=1.1e+02 Score=22.17 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHhHhhcCCCCCHH
Q 034267 58 PCYITSFLTVVILGVGLNAKPDLTIE 83 (100)
Q Consensus 58 p~Y~~~~g~~v~l~v~l~~KPDtsIq 83 (100)
..|+.||..++++...++|+|---.|
T Consensus 3 ll~l~ffi~Fl~~~Y~~~y~PTNK~q 28 (109)
T PF06129_consen 3 LLYLIFFILFLVLCYFFNYYPTNKMQ 28 (109)
T ss_pred HHHHHHHHHHHHHHHHHhhccchHHH
Confidence 46888888888888999999974433
No 47
>PRK14749 hypothetical protein; Provisional
Probab=21.31 E-value=94 Score=18.00 Aligned_cols=13 Identities=15% Similarity=0.534 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHH
Q 034267 58 PCYITSFLTVVIL 70 (100)
Q Consensus 58 p~Y~~~~g~~v~l 70 (100)
+||+..++++.++
T Consensus 1 MWYfaWiLG~~lA 13 (30)
T PRK14749 1 MWYLLWFVGILLM 13 (30)
T ss_pred ChHHHHHHHHHHH
Confidence 4677766665543
No 48
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=20.82 E-value=81 Score=27.97 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=9.2
Q ss_pred hcCCCCCCCCCCCCCC
Q 034267 14 RFGSTHAGPSRWTTPG 29 (100)
Q Consensus 14 ~rGg~~~g~~r~~s~g 29 (100)
++||||.++++|.-||
T Consensus 472 q~GGGg~~Hgf~n~hg 487 (504)
T KOG0624|consen 472 QGGGGGPFHGFWNEHG 487 (504)
T ss_pred cCCCCCCCCCCccccC
Confidence 3455555667776555
No 49
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=20.81 E-value=1.1e+02 Score=19.28 Aligned_cols=20 Identities=10% Similarity=0.343 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHHHhHhhc
Q 034267 57 LPCYITSFLTVVILGVGLNA 76 (100)
Q Consensus 57 ~p~Y~~~~g~~v~l~v~l~~ 76 (100)
..+|+.++..++++++++.+
T Consensus 2 ~~l~~~l~~~v~~~~~~~v~ 21 (85)
T TIGR02209 2 KKLYVLLLLAILVSAISVVS 21 (85)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 44666677666666665543
No 50
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=20.67 E-value=1.1e+02 Score=19.00 Aligned_cols=11 Identities=18% Similarity=0.111 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 034267 60 YITSFLTVVIL 70 (100)
Q Consensus 60 Y~~~~g~~v~l 70 (100)
.+.|.+++|++
T Consensus 25 ~~~f~~tivfa 35 (51)
T PF14715_consen 25 LWLFYGTIVFA 35 (51)
T ss_pred HHHHHHHHHHH
Confidence 33333444433
No 51
>PRK10179 formate dehydrogenase-N subunit gamma; Provisional
Probab=20.36 E-value=1.2e+02 Score=23.06 Aligned_cols=33 Identities=9% Similarity=0.057 Sum_probs=19.9
Q ss_pred ccccccCCC-CCCCCCCccccchhHHHHHHHHHHHH
Q 034267 36 GYLFNRTPP-PPGQSRKWEDWELPCYITSFLTVVIL 70 (100)
Q Consensus 36 G~LFge~P~-~PGqkrk~E~WE~p~Y~~~~g~~v~l 70 (100)
+++++.+|+ ||- .|--..+...|++++..++++
T Consensus 94 ~~~~~~~~~~p~~--gk~N~~QKl~y~~i~~~~~~~ 127 (217)
T PRK10179 94 EVLKGNEHKVADV--GKYNAGQKMMFWSIMSMIFVL 127 (217)
T ss_pred HHhcCCCCCCCCc--cccCHHHHHHHHHHHHHHHHH
Confidence 456665543 343 355667999998766655443
No 52
>PHA03066 Hypothetical protein; Provisional
Probab=20.13 E-value=2.2e+02 Score=20.79 Aligned_cols=27 Identities=15% Similarity=0.260 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHhHhhcCCCCCHHH
Q 034267 58 PCYITSFLTVVILGVGLNAKPDLTIET 84 (100)
Q Consensus 58 p~Y~~~~g~~v~l~v~l~~KPDtsIqt 84 (100)
..|+.||..++++...++|+|.--+|-
T Consensus 4 ~~~l~fFi~Fl~~~Y~~n~~PTNKlql 30 (110)
T PHA03066 4 LLYLLFFIIFLCISYYFNYYPTNKLQM 30 (110)
T ss_pred HHHHHHHHHHHHHHHHHhhccChhHHh
Confidence 358899999999999999999855443
Done!