Query 034267
Match_columns 100
No_of_seqs 75 out of 77
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 19:58:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034267.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034267hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j5y_A GA module, peptostrepto 51.1 9.6 0.00033 24.3 2.2 23 77-99 5-31 (61)
2 4fm4_B NitrIle hydratase beta 30.8 42 0.0014 25.0 3.4 47 39-95 13-59 (206)
3 2wwb_H 60S ribosomal protein L 29.4 17 0.0006 29.6 1.1 28 8-42 71-103 (362)
4 1vr4_A Hypothetical protein AP 22.3 40 0.0014 22.4 1.7 18 80-97 51-68 (103)
5 1cn3_F Fragment of coat protei 21.4 56 0.0019 17.8 1.9 15 49-63 13-27 (29)
6 1pyv_A ATP synthase beta chain 20.5 27 0.00094 21.4 0.5 30 12-41 14-50 (54)
7 2ju4_A GMP-PDE gamma, retinal 20.0 38 0.0013 22.8 1.2 23 32-54 31-53 (87)
8 1pw4_A Glycerol-3-phosphate tr 18.1 74 0.0025 22.7 2.4 27 54-80 184-210 (451)
9 2yue_A Protein neuralized; str 17.8 47 0.0016 23.7 1.3 18 33-50 34-51 (168)
10 2lat_A Dolichyl-diphosphooligo 17.7 80 0.0027 18.0 2.1 15 62-76 13-27 (37)
No 1
>2j5y_A GA module, peptostreptococcal albumin-binding protein; protein binding, cell WALL, peptidoglycan-anchor; 1.4A {Peptostreptococcus magnus} SCOP: a.8.1.2 PDB: 2vdb_B* 1gab_A 1prb_A 1tf0_B*
Probab=51.06 E-value=9.6 Score=24.29 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=17.4
Q ss_pred CCCCCHHHHHHHHHHH----HHhhccC
Q 034267 77 KPDLTIETWAHQKALE----RLQMEKS 99 (100)
Q Consensus 77 KPDtsIqtWA~~eA~~----RLe~e~~ 99 (100)
-|..||..||+.+|++ .|.+.|+
T Consensus 5 ~~~~t~~~~~L~eAKe~Ai~el~~~GI 31 (61)
T 2j5y_A 5 GSHMTIDQWLLKNAKEDAIAELKKAGI 31 (61)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHcCC
Confidence 5889999999988765 5555554
No 2
>4fm4_B NitrIle hydratase beta subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=30.81 E-value=42 Score=24.99 Aligned_cols=47 Identities=19% Similarity=0.362 Sum_probs=27.8
Q ss_pred cccCCCCCCCCCCccccchhHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHh
Q 034267 39 FNRTPPPPGQSRKWEDWELPCYITSFLTVVILGVGLNAKPDLTIETWAHQKALERLQ 95 (100)
Q Consensus 39 Fge~P~~PGqkrk~E~WE~p~Y~~~~g~~v~l~v~l~~KPDtsIqtWA~~eA~~RLe 95 (100)
||--|+.+.+.-=.++||.--+ . +++.+..+=-.|+..|.+ |+++|.
T Consensus 13 ~GpI~~~~~epvF~~~WE~raf---A-----l~~al~~~G~~~~De~R~--a~E~l~ 59 (206)
T 4fm4_B 13 FGPVIKTHNAKAFHEEWEVKMN---A-----ISGALVSKGIYNMDEYRH--GIERME 59 (206)
T ss_dssp CCCCCCCTTCCSCCSHHHHHHH---H-----HHHHHHHHTSSCHHHHHH--HHHTSC
T ss_pred CCCCCCCCCCCCccchHHHHHH---H-----HHHHHHhcCCcCHHHHHH--HHhcCC
Confidence 4555666777767789997533 1 222333344468888854 566654
No 3
>2wwb_H 60S ribosomal protein L4-B; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 2wwa_H 2ww9_H 3izc_D 3izs_D 3o58_D 3o5h_D 3u5e_C 3u5i_C 1s1i_D 3jyw_D
Probab=29.45 E-value=17 Score=29.59 Aligned_cols=28 Identities=18% Similarity=0.153 Sum_probs=18.4
Q ss_pred HHhhhhhcCCCCCCCCC-----CCCCCCCCCCCccccccC
Q 034267 8 RQRLFARFGSTHAGPSR-----WTTPGHQEKPNGYLFNRT 42 (100)
Q Consensus 8 r~~~~r~rGg~~~g~~r-----~~s~g~~e~P~G~LFge~ 42 (100)
|+|++|++|||.+-... | .-.|..|+-+
T Consensus 71 raripRv~g~Gs~RSp~ga~~~~-------~gGG~~fgP~ 103 (362)
T 2wwb_H 71 VARIPRVGGGGTGRSGQGAFGNM-------CRGGRMFAPT 103 (362)
T ss_dssp SCSCSCCCSCSSSSCSSTTTSSS-------CSSSCCSSSS
T ss_pred eeecccccCCCCCCCcccccCCc-------cCCeEECCCC
Confidence 56778999886543333 4 3478888864
No 4
>1vr4_A Hypothetical protein APC22750; structural genomics, pentamer, PSI, PR structure initiative, the midwest center for structural GEN MCSG; 2.09A {Bacillus cereus} SCOP: d.230.5.1 PDB: 2gtc_A
Probab=22.29 E-value=40 Score=22.39 Aligned_cols=18 Identities=11% Similarity=-0.012 Sum_probs=13.8
Q ss_pred CCHHHHHHHHHHHHHhhc
Q 034267 80 LTIETWAHQKALERLQME 97 (100)
Q Consensus 80 tsIqtWA~~eA~~RLe~e 97 (100)
++.-.=|+++|.+||+++
T Consensus 51 ~~~l~~aR~~A~~rm~~~ 68 (103)
T 1vr4_A 51 ESKLKEARDIAMDEMKEL 68 (103)
T ss_dssp SCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455999999999875
No 5
>1cn3_F Fragment of coat protein VP2; viral coat protein VP1, viral coat protein VP2, viral entry, viral protein; 2.20A {Polyomavirus}
Probab=21.36 E-value=56 Score=17.80 Aligned_cols=15 Identities=33% Similarity=0.559 Sum_probs=10.0
Q ss_pred CCCccccchhHHHHH
Q 034267 49 SRKWEDWELPCYITS 63 (100)
Q Consensus 49 krk~E~WE~p~Y~~~ 63 (100)
.|..-||-+|.-+++
T Consensus 13 qrvtpdwmlplilgl 27 (29)
T 1cn3_F 13 QRVTPDWMLPLILGL 27 (29)
T ss_dssp CCCEEGGGHHHHHHT
T ss_pred cccCchhhHHHHHhc
Confidence 456678888865544
No 6
>1pyv_A ATP synthase beta chain, mitochondrial precursor; hydrolase; NMR {Nicotiana plumbaginifolia} SCOP: j.36.4.1
Probab=20.54 E-value=27 Score=21.41 Aligned_cols=30 Identities=30% Similarity=0.438 Sum_probs=16.3
Q ss_pred hhhcCCCCC----CCCCC--CCCC-CCCCCCcccccc
Q 034267 12 FARFGSTHA----GPSRW--TTPG-HQEKPNGYLFNR 41 (100)
Q Consensus 12 ~r~rGg~~~----g~~r~--~s~g-~~e~P~G~LFge 41 (100)
..+||||-- |.+-- ++-. ....|+|||.|.
T Consensus 14 saqrggglisrslgnsipksasrassraspkgfllnr 50 (54)
T 1pyv_A 14 SAQRGGGLISRSLGNSIPKSASRASSRASPKGFLLNR 50 (54)
T ss_dssp HHTTSSCSSSSTGGGGTTTTSTTTSTTCSHHHHHHHH
T ss_pred HHHhCCceeehhhcccCcchhhhhhcccCccchhhhh
Confidence 578888632 22211 1111 345688998875
No 7
>2ju4_A GMP-PDE gamma, retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic phosphodiesterase subunit gamma...; intrinsic disordered protein; HET: RCY; NMR {Bos taurus}
Probab=20.04 E-value=38 Score=22.76 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=16.6
Q ss_pred CCCCccccccCCCCCCCCCCccc
Q 034267 32 EKPNGYLFNRTPPPPGQSRKWED 54 (100)
Q Consensus 32 e~P~G~LFge~P~~PGqkrk~E~ 54 (100)
.+-.-.-|..|||++|++---+|
T Consensus 31 KQR~TRqFKSKpPKkGvkGfgdd 53 (87)
T 2ju4_A 31 KQRQTRQCKSKPPKKGVQGCGDD 53 (87)
T ss_dssp SSCSSSSCCSSCSCSSSSCCCCS
T ss_pred chhhccccccCCCCCCccccccc
Confidence 33455679999999999865443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=18.08 E-value=74 Score=22.71 Aligned_cols=27 Identities=19% Similarity=0.490 Sum_probs=18.8
Q ss_pred ccchhHHHHHHHHHHHHHhHhhcCCCC
Q 034267 54 DWELPCYITSFLTVVILGVGLNAKPDL 80 (100)
Q Consensus 54 ~WE~p~Y~~~~g~~v~l~v~l~~KPDt 80 (100)
+|..+|++....+++.+.+.+.+-||+
T Consensus 184 ~w~~~f~~~~~~~~~~~~~~~~~~~~~ 210 (451)
T 1pw4_A 184 DWHAALYMPAFCAILVALFAFAMMRDT 210 (451)
T ss_dssp CSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 499999988877776666555555553
No 9
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=17.82 E-value=47 Score=23.66 Aligned_cols=18 Identities=11% Similarity=0.026 Sum_probs=15.7
Q ss_pred CCCccccccCCCCCCCCC
Q 034267 33 KPNGYLFNRTPPPPGQSR 50 (100)
Q Consensus 33 ~P~G~LFge~P~~PGqkr 50 (100)
--+|..|...|..+||+-
T Consensus 34 f~~givFS~RPl~~~E~~ 51 (168)
T 2yue_A 34 FCRAITFSARPVRINERI 51 (168)
T ss_dssp SSCCEEEESSCCCSSCCE
T ss_pred CCceEEEECCCCcCCCEE
Confidence 458999999999999974
No 10
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=17.65 E-value=80 Score=18.02 Aligned_cols=15 Identities=13% Similarity=-0.024 Sum_probs=7.8
Q ss_pred HHHHHHHHHHhHhhc
Q 034267 62 TSFLTVVILGVGLNA 76 (100)
Q Consensus 62 ~~~g~~v~l~v~l~~ 76 (100)
+++.+++++.|+|.|
T Consensus 13 ~lG~~~~~LIVlYH~ 27 (37)
T 2lat_A 13 MLGVSLFLLVVLYHY 27 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555666654
Done!