Query 034267
Match_columns 100
No_of_seqs 75 out of 77
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 19:58:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034267.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034267hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gjsa_ a.8.1.2 (A:) IgG bindi 61.6 2 0.00015 26.2 1.9 28 72-99 5-36 (65)
2 d1mv8a3 c.26.3.1 (A:301-436) G 47.8 0.75 5.5E-05 29.1 -1.9 12 70-81 17-28 (136)
3 d1dlja3 c.26.3.1 (A:295-402) U 36.3 1.4 0.0001 27.3 -1.9 30 69-98 18-48 (108)
4 d1vr4a1 d.230.5.1 (A:1-103) Hy 30.2 13 0.00096 22.8 2.1 19 79-97 50-68 (103)
5 d2j5ya1 a.8.1.2 (A:1-53) PAB { 26.9 23 0.0017 20.4 2.6 19 81-99 1-23 (53)
6 d1smye_ a.143.1.1 (E:) RNA pol 22.6 16 0.0011 23.3 1.3 15 76-90 53-67 (95)
7 d2e74e1 f.23.24.1 (E:1-32) Pet 19.2 47 0.0034 17.1 2.6 18 58-75 6-23 (32)
8 d1y2ia_ d.230.5.1 (A:) Hypothe 19.2 20 0.0015 22.2 1.3 18 80-97 51-68 (109)
9 d2hs5a1 a.4.5.6 (A:25-93) Puta 17.8 28 0.002 19.4 1.6 13 87-99 42-54 (69)
10 d1rjja_ d.58.4.4 (A:) Hypothet 14.7 34 0.0025 20.5 1.6 23 72-96 10-32 (111)
No 1
>d1gjsa_ a.8.1.2 (A:) IgG binding protein G {Streptococcus sp., group G [TaxId: 1306]}
Probab=61.61 E-value=2 Score=26.22 Aligned_cols=28 Identities=21% Similarity=0.153 Sum_probs=21.5
Q ss_pred hHhhcCCCCCHHHHHHHHHH----HHHhhccC
Q 034267 72 VGLNAKPDLTIETWAHQKAL----ERLQMEKS 99 (100)
Q Consensus 72 v~l~~KPDtsIqtWA~~eA~----~RLe~e~~ 99 (100)
+++..||+-.|..|++.+|+ +.|.+-|+
T Consensus 5 ~v~~~k~ed~v~~~~L~~AKe~Ai~Elk~yGi 36 (65)
T d1gjsa_ 5 FVLNAQHDEAVDANSLAEAKVLANRELDKYGV 36 (65)
T ss_dssp CSSCSSCCSSCTHHHHHHHHHHHHHHHHHHTC
T ss_pred eeeccCcHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 46789999999999877765 55666554
No 2
>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=47.81 E-value=0.75 Score=29.13 Aligned_cols=12 Identities=25% Similarity=0.127 Sum_probs=9.9
Q ss_pred HHhHhhcCCCCC
Q 034267 70 LGVGLNAKPDLT 81 (100)
Q Consensus 70 l~v~l~~KPDts 81 (100)
+.+|+.|||||+
T Consensus 17 ~ilGlafK~~t~ 28 (136)
T d1mv8a3 17 GLLGLSFKAGTD 28 (136)
T ss_dssp EEECCSSSTTCC
T ss_pred EEEEEEECCCCc
Confidence 467899999975
No 3
>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}
Probab=36.33 E-value=1.4 Score=27.32 Aligned_cols=30 Identities=13% Similarity=0.077 Sum_probs=16.5
Q ss_pred HHHhHhhcCCCCC-HHHHHHHHHHHHHhhcc
Q 034267 69 ILGVGLNAKPDLT-IETWAHQKALERLQMEK 98 (100)
Q Consensus 69 ~l~v~l~~KPDts-IqtWA~~eA~~RLe~e~ 98 (100)
++..||.|||||+ +..=+--+-.+.|...|
T Consensus 18 I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g 48 (108)
T d1dlja3 18 VGVYRLIMKSNSDNFRESAIKDVIDILKSKD 48 (108)
T ss_dssp EEEECCCSSTTCSCCTTCHHHHHHHHHHTSS
T ss_pred EEEEEEEECCCCcchhhhhHHHHHHHHhccc
Confidence 3467899999964 22222233344555444
No 4
>d1vr4a1 d.230.5.1 (A:1-103) Hypothetical protein BC1012 {Bacillus cereus [TaxId: 1396]}
Probab=30.22 E-value=13 Score=22.84 Aligned_cols=19 Identities=11% Similarity=-0.060 Sum_probs=16.4
Q ss_pred CCCHHHHHHHHHHHHHhhc
Q 034267 79 DLTIETWAHQKALERLQME 97 (100)
Q Consensus 79 DtsIqtWA~~eA~~RLe~e 97 (100)
-+.....|++||.+||+++
T Consensus 50 y~~~l~~aR~eA~~rl~~~ 68 (103)
T d1vr4a1 50 YESKLKEARDIAMDEMKEL 68 (103)
T ss_dssp SSCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3677889999999999876
No 5
>d2j5ya1 a.8.1.2 (A:1-53) PAB {Peptostreptococcus magnus [TaxId: 1260]}
Probab=26.87 E-value=23 Score=20.41 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=12.5
Q ss_pred CHHHHHHH----HHHHHHhhccC
Q 034267 81 TIETWAHQ----KALERLQMEKS 99 (100)
Q Consensus 81 sIqtWA~~----eA~~RLe~e~~ 99 (100)
+|..|-++ +|.+.|++.||
T Consensus 1 tid~~~Lk~AKe~AI~eLK~~GI 23 (53)
T d2j5ya1 1 TIDQWLLKNAKEDAIAELKKAGI 23 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ChhHHHHHHHHHHHHHHHHHcCc
Confidence 47778555 45567777776
No 6
>d1smye_ a.143.1.1 (E:) RNA polymerase omega subunit {Thermus thermophilus [TaxId: 274]}
Probab=22.60 E-value=16 Score=23.35 Aligned_cols=15 Identities=33% Similarity=0.441 Sum_probs=12.6
Q ss_pred cCCCCCHHHHHHHHH
Q 034267 76 AKPDLTIETWAHQKA 90 (100)
Q Consensus 76 ~KPDtsIqtWA~~eA 90 (100)
-|||-...|||.+|-
T Consensus 53 ~~~dpN~vt~AMkEL 67 (95)
T d1smye_ 53 LFDDPNAETWAMKEL 67 (95)
T ss_dssp GGTSSCSHHHHHHHH
T ss_pred cCCCCcHHHHHHHHH
Confidence 378889999999884
No 7
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=19.22 E-value=47 Score=17.13 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHhHhh
Q 034267 58 PCYITSFLTVVILGVGLN 75 (100)
Q Consensus 58 p~Y~~~~g~~v~l~v~l~ 75 (100)
.||+-|..-+..+.|+..
T Consensus 6 vfyivfialffgiavgii 23 (32)
T d2e74e1 6 VFYIVFIALFFGIAVGII 23 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHhhhe
Confidence 577766655555555544
No 8
>d1y2ia_ d.230.5.1 (A:) Hypothetical protein YbjQ {Shigella flexneri [TaxId: 623]}
Probab=19.18 E-value=20 Score=22.25 Aligned_cols=18 Identities=22% Similarity=0.047 Sum_probs=15.3
Q ss_pred CCHHHHHHHHHHHHHhhc
Q 034267 80 LTIETWAHQKALERLQME 97 (100)
Q Consensus 80 tsIqtWA~~eA~~RLe~e 97 (100)
+..-..|+++|.+||+++
T Consensus 51 ~~~l~~aR~~Al~rl~~~ 68 (109)
T d1y2ia_ 51 EKELRKAREIAFEELGSQ 68 (109)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566788999999999875
No 9
>d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=17.77 E-value=28 Score=19.41 Aligned_cols=13 Identities=15% Similarity=0.202 Sum_probs=10.5
Q ss_pred HHHHHHHHhhccC
Q 034267 87 HQKALERLQMEKS 99 (100)
Q Consensus 87 ~~eA~~RLe~e~~ 99 (100)
-.+|.++|+++|+
T Consensus 42 vr~Al~~L~~~Gl 54 (69)
T d2hs5a1 42 VREAFQILIEDRL 54 (69)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCc
Confidence 4688899998885
No 10
>d1rjja_ d.58.4.4 (A:) Hypothetical protein AT5G22580 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=14.72 E-value=34 Score=20.50 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=17.0
Q ss_pred hHhhcCCCCCHHHHHHHHHHHHHhh
Q 034267 72 VGLNAKPDLTIETWAHQKALERLQM 96 (100)
Q Consensus 72 v~l~~KPDtsIqtWA~~eA~~RLe~ 96 (100)
|.+.+|||++++.. .++.+.|..
T Consensus 10 Vlfklk~~~~~e~i--~~~l~~L~~ 32 (111)
T d1rjja_ 10 VVVKFKEDTKVDEI--LKGLENLVS 32 (111)
T ss_dssp EEEECSSCCCHHHH--HHHHHHHHG
T ss_pred EEEEECCCCCHHHH--HHHHHHHHh
Confidence 56679999999864 566777754
Done!