Citrus Sinensis ID: 034268

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100
Protein Sequence
MATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNTVAQSHSSTA
Secondary Structure (PSIPRED)
ccEEcccEEcccccccHHHHHHHHHHHHHHHccccccEEEEEEEEEEEEEEEcEEEEEEEEEcccccEEEEEEEEEEcccccEEEEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccEEccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEEEEEcEEEEEEEEEEcccccEEEEEEEEEEccHcHHEHEEcccccccccccc
Coil and Loop (DISEMBL)
matvggvrEVEATANNQEIVNLARFAVDehnkkqnsNLQFVKVVSAKQQVVSGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNTVAQSHSSTA
Flexible Loop (DISEMBL)
matvggvreveatannqeiVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKelkefntvaqshssta
Low Complexity Region (SEG)
MATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFvkvvsakqqvvsGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNTVAQSHSSTA
Disordered region (IsUnstruct)
*****************EIVNLARFAVDE******SNLQFVKVVSAKQQVVSGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEF***********
Disordered Region (DISOPRED)
MATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEF***********
Disordered Region (DISEMBL)
MATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEF***********
Disordered Region (DISPRO)
*ATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNT*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNTVAQSHSSTA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	100	2.2.26 [Sep-21-2011]
Q06445	97	Cysteine proteinase inhib	N/A	no	0.95	0.979	0.663	2e-30
Q8H0X6	234	Cysteine proteinase inhib	yes	no	1.0	0.427	0.59	8e-29
Q0JNR2	250	Cysteine proteinase inhib	yes	no	0.96	0.384	0.552	3e-26
P09229	140	Cysteine proteinase inhib	no	no	0.92	0.657	0.623	2e-25
Q41906	125	Cysteine proteinase inhib	no	no	0.86	0.688	0.593	3e-24
P31726	135	Cystatin-1 OS=Zea mays GN	N/A	no	0.94	0.696	0.531	1e-22
Q10992	82	Cysteine proteinase inhib	N/A	no	0.8	0.975	0.65	4e-22
Q945Q1	101	Cysteine proteinase inhib	no	no	0.87	0.861	0.494	2e-20
Q8LC76	232	Cysteine proteinase inhib	no	no	0.94	0.405	0.463	5e-20
Q6I570	184	Cysteine proteinase inhib	no	no	0.83	0.451	0.518	2e-19

>sp|Q06445|CYTI_VIGUN Cysteine proteinase inhibitor OS=Vigna unguiculata PE=3 SV=1

 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/95 (66%), Positives = 78/95 (82%)

Query: 1  MATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITL 60
          MA +GG R+V    N+ EI +LARFAV+EHNKKQN+ L+F +VVSA+QQVVSGTLY ITL
Sbjct: 1  MAALGGNRDVAGNQNSLEIDSLARFAVEEHNKKQNALLEFGRVVSAQQQVVSGTLYTITL 60

Query: 61 EAVEGGQKKLFEAKVWEKPWMQFKELKEFNTVAQS 95
          EA +GGQKK++EAKVWEKPW+ FKEL+EF  V  +
Sbjct: 61 EAKDGGQKKVYEAKVWEKPWLNFKELQEFKHVGDA 95

Vigna unguiculata (taxid: 3917)

>sp|Q8H0X6|CYT6_ARATH Cysteine proteinase inhibitor 6 OS=Arabidopsis thaliana GN=CYS6 PE=1 SV=2

 Score =  125 bits (314), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 59/100 (59%), Positives = 79/100 (79%)

Query: 1   MATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITL 60
           MA VGGV +V A  N+ E+ +LARFAVDEHNKK+N+ L+F +VV AK+QVV+GTL+ +TL
Sbjct: 34  MALVGGVGDVPANQNSGEVESLARFAVDEHNKKENALLEFARVVKAKEQVVAGTLHHLTL 93

Query: 61  EAVEGGQKKLFEAKVWEKPWMQFKELKEFNTVAQSHSSTA 100
           E +E GQKKL+EAKVW KPW+ FKEL+EF   + + + T+
Sbjct: 94  EILEAGQKKLYEAKVWVKPWLNFKELQEFKPASDAPAITS 133

Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0JNR2|CYT12_ORYSJ Cysteine proteinase inhibitor 12 OS=Oryza sativa subsp. japonica GN=Os01g0270100 PE=2 SV=1

 Score =  116 bits (291), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 53/96 (55%), Positives = 74/96 (77%)

Query: 4   VGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITLEAV 63
           +GG  +  + AN+ E   LARFAVDEHNK++N+ L+FV+VV AK+QVV+GTL+ +TLEA+
Sbjct: 48  LGGAHDAPSAANSVETDALARFAVDEHNKRENALLEFVRVVEAKEQVVAGTLHHLTLEAL 107

Query: 64  EGGQKKLFEAKVWEKPWMQFKELKEFNTVAQSHSST 99
           E G+KK++EAKVW KPW+ FKEL+EF     + + T
Sbjct: 108 EAGRKKVYEAKVWVKPWLDFKELQEFRNTGDATTFT 143

Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P09229|CYT1_ORYSJ Cysteine proteinase inhibitor 1 OS=Oryza sativa subsp. japonica GN=Os01g0803200 PE=1 SV=2

 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/93 (62%), Positives = 68/93 (73%), Gaps = 1/93 (1%)

Query: 3   TVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITLEA 62
            +GGV  V    N+  +V+LARFAV EHNKK NS L+F K+VS KQQVV+GTLY  T+E 
Sbjct: 46  VLGGVEPV-GNENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTIEV 104

Query: 63  VEGGQKKLFEAKVWEKPWMQFKELKEFNTVAQS 95
            EG  KKL+EAKVWEKPWM FKEL+EF  V  S
Sbjct: 105 KEGDAKKLYEAKVWEKPWMDFKELQEFKPVDAS 137

There are two distinct cystatins in rice seeds (Oryzacystatin-1 and -2) with different specificities against cysteine proteinases. May be involved in the control of germination by inhibition of endogenous cysteine proteinases. May play a role in defense by inhibiting exogenous proteases such as those present in digestive tracks of insects and nematodes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q41906|CYT3_ARATH Cysteine proteinase inhibitor 3 OS=Arabidopsis thaliana GN=CYS3 PE=2 SV=2

 Score =  110 bits (275), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 67/86 (77%)

Query: 4   VGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITLEAV 63
           +GGV ++    N+ EI +LARFA+ EHNK+QN  L+F K+V A++QVV+GT+Y +TLEA 
Sbjct: 35  LGGVHDLRGNQNSGEIESLARFAIQEHNKQQNKILEFKKIVKAREQVVAGTMYHLTLEAK 94

Query: 64  EGGQKKLFEAKVWEKPWMQFKELKEF 89
           EG Q K FEAKVW KPWM FK+L+EF
Sbjct: 95  EGDQTKNFEAKVWVKPWMNFKQLQEF 120

Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens.

Arabidopsis thaliana (taxid: 3702)

>sp|P31726|CYT1_MAIZE Cystatin-1 OS=Zea mays GN=RAMDAZC7 PE=2 SV=1

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/94 (53%), Positives = 70/94 (74%)

Query: 5   GGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITLEAVE 64
           GG+++V A  N+ ++  LARFAV+EHN+K N+ L F K+V AK QVV+GT+Y +T+E  +
Sbjct: 42  GGIKDVPANENDLQLQELARFAVNEHNQKANALLGFEKLVKAKTQVVAGTMYYLTIEVKD 101

Query: 65  GGQKKLFEAKVWEKPWMQFKELKEFNTVAQSHSS 98
           G  KKL+EAKVWEKPW  FK+L+EF  V +  S+
Sbjct: 102 GEVKKLYEAKVWEKPWENFKQLQEFKPVEEGASA 135

Zea mays (taxid: 4577)

>sp|Q10992|CYTA_HELAN Cysteine proteinase inhibitor A OS=Helianthus annuus PE=1 SV=1

 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 52/80 (65%), Positives = 61/80 (76%)

Query: 18 EIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITLEAVEGGQKKLFEAKVWE 77
          EI  LARFAVDEHNKKQN+ L+F KVV+ K+QVV+G +Y ITLEA  GG KK +EAKVW 
Sbjct: 3  EIDELARFAVDEHNKKQNALLEFGKVVNTKEQVVAGKMYYITLEATNGGVKKTYEAKVWV 62

Query: 78 KPWMQFKELKEFNTVAQSHS 97
          KPW  FKEL+EF  V  + S
Sbjct: 63 KPWENFKELQEFKPVDAATS 82

Strong inhibitor of papain and ficin but poor inhibitor of cathepsin H, B and L.

Helianthus annuus (taxid: 4232)

>sp|Q945Q1|CYT1_ARATH Cysteine proteinase inhibitor 1 OS=Arabidopsis thaliana GN=CYS1 PE=1 SV=2

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/87 (49%), Positives = 66/87 (75%)

Query: 4  VGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITLEAV 63
          VGGVR+++A AN+ ++ +LARFAVDEHNK +N  L++ +++ AK QVV+GT++ +T+E  
Sbjct: 10 VGGVRDIDANANDLQVESLARFAVDEHNKNENLTLEYKRLLGAKTQVVAGTMHHLTVEVA 69

Query: 64 EGGQKKLFEAKVWEKPWMQFKELKEFN 90
          +G   K++EAKV EK W   K+L+ FN
Sbjct: 70 DGETNKVYEAKVLEKAWENLKQLESFN 96

Involved in suppression of hypersensitive cell death activated by either avirulent pathogen or oxidative stress.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LC76|CYT7_ARATH Cysteine proteinase inhibitor 7 OS=Arabidopsis thaliana GN=CYS7 PE=2 SV=2

 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 44/95 (46%), Positives = 68/95 (71%), Gaps = 1/95 (1%)

Query: 4   VGGVREVEATANN-QEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITLEA 62
           +GG  + +   N  +EI ++A FAV EHN+++N+ L+  +V+ A +QVV+G LY +TLE 
Sbjct: 45  LGGFSDSKNDWNGGKEIDDIALFAVQEHNRRENAVLELARVLKATEQVVAGKLYRLTLEV 104

Query: 63  VEGGQKKLFEAKVWEKPWMQFKELKEFNTVAQSHS 97
           +E G+KK++EAKVW KPWM FK+L+EF  +  S +
Sbjct: 105 IEAGEKKIYEAKVWVKPWMNFKQLQEFKNIIPSFT 139

Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6I570|CYT3_ORYSJ Cysteine proteinase inhibitor 3 OS=Oryza sativa subsp. japonica GN=Os05g0409300 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/83 (51%), Positives = 59/83 (71%)

Query: 18  EIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITLEAVEGGQKKLFEAKVWE 77
           E  + ARFAV E+NK Q + L+F ++V AK+QVV+GTL+D+ LE V+ G+K L+ AKVW 
Sbjct: 59  EAEDAARFAVAEYNKNQGAELEFARIVKAKRQVVTGTLHDLMLEVVDSGKKSLYSAKVWV 118

Query: 78  KPWMQFKELKEFNTVAQSHSSTA 100
           KPW+ FK + EF  V  S S +A
Sbjct: 119 KPWLDFKAVVEFRHVGDSQSQSA 141

Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
8099682	101	cysteine protease inhibitor [Manihot esc	0.99	0.980	0.616	6e-30
110631504	98	cysteine proteinase inhibitor [Pelargoni	0.98	1.0	0.653	1e-29
268321205	101	latex cystatin [Hevea brasiliensis]	0.99	0.980	0.606	1e-29
255564458	101	Cysteine proteinase inhibitor, putative	1.0	0.990	0.59	2e-29
224054226	101	predicted protein [Populus trichocarpa]	1.0	0.990	0.62	2e-29
1169196	97	RecName: Full=Cysteine proteinase inhibi	0.95	0.979	0.663	9e-29
42600879	95	cysteine proteinase inhibitor [Aegiceras	0.95	1.0	0.663	9e-29
282848226	106	multicystatin/cysteine protease inhibito	0.99	0.933	0.585	1e-28
110748606	247	cystatin [Amaranthus hypochondriacus]	1.0	0.404	0.6	1e-28
388506102	98	unknown [Lotus japonicus]	0.97	0.989	0.639	2e-28

>gi|8099682|gb|AAF72202.1|AF265551_1 cysteine protease inhibitor [Manihot esculenta]

 Score =  134 bits (337), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 61/99 (61%), Positives = 82/99 (82%)

Query: 1  MATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITL 60
          MAT+GG++EVE +AN+ EI NLARFAVD++NKKQN+ L+F +VVS KQQVV+GT+Y ITL
Sbjct: 1  MATLGGIKEVEESANSVEIDNLARFAVDDYNKKQNALLEFKRVVSTKQQVVAGTMYYITL 60

Query: 61 EAVEGGQKKLFEAKVWEKPWMQFKELKEFNTVAQSHSST 99
          E  +GGQ K++EAKVWEKPW+ FKE++EF  +  + S +
Sbjct: 61 EVADGGQTKVYEAKVWEKPWLNFKEVQEFKPIGVAPSDS 99

Source: Manihot esculenta

Species: Manihot esculenta

Genus: Manihot

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110631504|gb|ABG81097.1| cysteine proteinase inhibitor [Pelargonium x hortorum]

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 64/98 (65%), Positives = 77/98 (78%)

Query: 1  MATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITL 60
          M TVGG+ E   T N+ +I  LARFAVDEHNKKQN+ LQF  VVS KQQVV+GT+Y ITL
Sbjct: 1  MTTVGGISETPGTQNSLQIDALARFAVDEHNKKQNTLLQFGGVVSVKQQVVAGTMYYITL 60

Query: 61 EAVEGGQKKLFEAKVWEKPWMQFKELKEFNTVAQSHSS 98
          EA++G +KKL+EAKVWEKPWM FKEL+EF  V  + S+
Sbjct: 61 EAMDGDKKKLYEAKVWEKPWMNFKELQEFKPVGDASSA 98

Source: Pelargonium x hortorum

Species: Pelargonium x hortorum

Genus: Pelargonium

Family: Geraniaceae

Order: Geraniales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|268321205|gb|ACZ02398.1| latex cystatin [Hevea brasiliensis]

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 60/99 (60%), Positives = 84/99 (84%)

Query: 1  MATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITL 60
          MA +GGV+EVE +AN+ EI +LAR+AVD++N+KQN+ L+F KVV+AKQQVV+GT+Y ITL
Sbjct: 1  MAKLGGVKEVEGSANSVEINSLARYAVDDYNQKQNALLEFKKVVNAKQQVVAGTIYYITL 60

Query: 61 EAVEGGQKKLFEAKVWEKPWMQFKELKEFNTVAQSHSST 99
          E ++GGQKK++EAKVWEKPW+ FKE++EF  +  + S +
Sbjct: 61 EVIDGGQKKVYEAKVWEKPWLNFKEVQEFKLIGDAPSDS 99

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564458|ref|XP_002523225.1| Cysteine proteinase inhibitor, putative [Ricinus communis] gi|223537521|gb|EEF39146.1| Cysteine proteinase inhibitor, putative [Ricinus communis]

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 59/100 (59%), Positives = 84/100 (84%)

Query: 1   MATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITL 60
           MAT GG++EV+ +AN+ EI +LARFAVD++NKKQN+ L++ KVV+AKQQVV+GT+Y ITL
Sbjct: 1   MATAGGIQEVQGSANSVEIDSLARFAVDDYNKKQNALLEYKKVVNAKQQVVAGTMYYITL 60

Query: 61  EAVEGGQKKLFEAKVWEKPWMQFKELKEFNTVAQSHSSTA 100
           E ++GG KK++EAK+WEKPW+ FKE++EF  +  + S T+
Sbjct: 61  EVMDGGHKKVYEAKIWEKPWLNFKEVQEFKLIGDAPSETS 100

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054226|ref|XP_002298154.1| predicted protein [Populus trichocarpa] gi|222845412|gb|EEE82959.1| predicted protein [Populus trichocarpa]

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/100 (62%), Positives = 81/100 (81%)

Query: 1   MATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITL 60
           MATVGG+ EVE TAN+ EI +LARFAVD++NKKQNS L+F +V++AKQQVV+GT+Y IT 
Sbjct: 1   MATVGGITEVEGTANSLEIDSLARFAVDDYNKKQNSVLEFKRVLNAKQQVVAGTIYYITF 60

Query: 61  EAVEGGQKKLFEAKVWEKPWMQFKELKEFNTVAQSHSSTA 100
           E  EGG KK++EAKVW KPW+ FKE++EF  VA +   ++
Sbjct: 61  EVTEGGHKKVYEAKVWVKPWLNFKEVQEFKLVADAPCDSS 100

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1169196|sp|Q06445.1|CYTI_VIGUN RecName: Full=Cysteine proteinase inhibitor; AltName: Full=Cystatin gi|288188|emb|CAA79954.1| cysteine proteinase inhibitor [Vigna unguiculata]

 Score =  130 bits (327), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 63/95 (66%), Positives = 78/95 (82%)

Query: 1  MATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITL 60
          MA +GG R+V    N+ EI +LARFAV+EHNKKQN+ L+F +VVSA+QQVVSGTLY ITL
Sbjct: 1  MAALGGNRDVAGNQNSLEIDSLARFAVEEHNKKQNALLEFGRVVSAQQQVVSGTLYTITL 60

Query: 61 EAVEGGQKKLFEAKVWEKPWMQFKELKEFNTVAQS 95
          EA +GGQKK++EAKVWEKPW+ FKEL+EF  V  +
Sbjct: 61 EAKDGGQKKVYEAKVWEKPWLNFKELQEFKHVGDA 95

Source: Vigna unguiculata

Species: Vigna unguiculata

Genus: Vigna

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42600879|gb|AAS21216.1| cysteine proteinase inhibitor [Aegiceras corniculatum]

 Score =  130 bits (327), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 63/95 (66%), Positives = 77/95 (81%)

Query: 1  MATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITL 60
          MA VGG+ E E +AN+ E+  LARFAVD+HNKKQN+ L+FVKVV+ K+QVVSGTLY ITL
Sbjct: 1  MAKVGGIHEKEGSANSVEMDELARFAVDQHNKKQNALLEFVKVVNVKEQVVSGTLYYITL 60

Query: 61 EAVEGGQKKLFEAKVWEKPWMQFKELKEFNTVAQS 95
          EA  GGQKKL+EAKVW KPWM FKEL++F   + +
Sbjct: 61 EATGGGQKKLYEAKVWVKPWMNFKELQDFQLASDA 95

Source: Aegiceras corniculatum

Species: Aegiceras corniculatum

Genus: Aegiceras

Family: Primulaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|282848226|gb|ADB02894.1| multicystatin/cysteine protease inhibitor [Jatropha curcas]

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/99 (58%), Positives = 82/99 (82%)

Query: 1  MATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITL 60
          MATVGG++EVE  AN+ EI  LARFAVD++NKKQN+ L++ +VV+AKQQVV+GT+Y ITL
Sbjct: 1  MATVGGIKEVEGFANSVEIDGLARFAVDDYNKKQNALLEYKRVVNAKQQVVAGTIYYITL 60

Query: 61 EAVEGGQKKLFEAKVWEKPWMQFKELKEFNTVAQSHSST 99
          E  +GGQKK++EAK+WEKPW+ FK+++EF  +  + + +
Sbjct: 61 EVEDGGQKKVYEAKIWEKPWLNFKDVQEFKLIGDAPTQS 99

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110748606|gb|ABG89856.1| cystatin [Amaranthus hypochondriacus]

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/100 (60%), Positives = 80/100 (80%)

Query: 1   MATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITL 60
           MAT+GG+RE +  AN+ EI +LARFAVDEHNKK+N+ L+F +VV AK+QVV+GTL+  T+
Sbjct: 42  MATLGGLRESQGAANDAEIESLARFAVDEHNKKENALLEFARVVKAKEQVVAGTLHHFTI 101

Query: 61  EAVEGGQKKLFEAKVWEKPWMQFKELKEFNTVAQSHSSTA 100
           EA++ G+KKL++AKVW KPWM FKEL+EF     S S T+
Sbjct: 102 EAIDAGKKKLYDAKVWVKPWMNFKELQEFKHTEDSPSFTS 141

Source: Amaranthus hypochondriacus

Species: Amaranthus hypochondriacus

Genus: Amaranthus

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506102|gb|AFK41117.1| unknown [Lotus japonicus]

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/97 (63%), Positives = 77/97 (79%)

Query: 1  MATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITL 60
          MA VGG  EV    N+ EI NLARFAV+EHNKKQN+ L+F KVVSA QQVV+GTLY I L
Sbjct: 1  MAAVGGASEVPGNQNSLEIENLARFAVEEHNKKQNTLLEFGKVVSATQQVVAGTLYKIKL 60

Query: 61 EAVEGGQKKLFEAKVWEKPWMQFKELKEFNTVAQSHS 97
          EA +GG+K+++EAK+WEKPW+ FKEL+EFN V  + +
Sbjct: 61 EANDGGKKQVYEAKIWEKPWLNFKELQEFNLVGDASA 97

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
TAIR|locus:2092492	234	CYSB "cystatin B" [Arabidopsis	1.0	0.427	0.52	1.8e-23
TAIR|locus:2058515	125	CYSA "cystatin A" [Arabidopsis	0.86	0.688	0.523	7.2e-20
TAIR|locus:2177063	101	CYS1 "cystatin-1" [Arabidopsis	0.87	0.861	0.436	3.2e-17
TAIR|locus:2175294	232	AT5G05110 [Arabidopsis thalian	0.92	0.396	0.419	1.1e-16
UNIPROTKB|Q6TPK4	116	Q6TPK4 "Cysteine proteinase in	0.91	0.784	0.369	4.4e-13
TAIR|locus:2168973	122	AT5G47550 [Arabidopsis thalian	0.87	0.713	0.348	3.2e-10
TAIR|locus:2130709	117	AT4G16500 [Arabidopsis thalian	0.87	0.743	0.329	2.2e-09
TAIR|locus:2045537	147	CYS2 "PHYTOCYSTATIN 2" [Arabid	0.57	0.387	0.288	2e-05

TAIR|locus:2092492 CYSB "cystatin B" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 52/100 (52%), Positives = 69/100 (69%)

Query:     1 MATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITL 60
             MA VGGV +V A  N+ E+ +LARFAVDEHNKK+N+ L+F            GTL+ +TL
Sbjct:    34 MALVGGVGDVPANQNSGEVESLARFAVDEHNKKENALLEFARVVKAKEQVVAGTLHHLTL 93

Query:    61 EAVEGGQKKLFEAKVWEKPWMQFKELKEFNTVAQSHSSTA 100
             E +E GQKKL+EAKVW KPW+ FKEL+EF   + + + T+
Sbjct:    94 EILEAGQKKLYEAKVWVKPWLNFKELQEFKPASDAPAITS 133

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA;ISS;IDA

GO:0005576 "extracellular region" evidence=ISM

GO:0006972 "hyperosmotic response" evidence=IMP

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0009409 "response to cold" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2058515 CYSA "cystatin A" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 45/86 (52%), Positives = 57/86 (66%)

Query:     4 VGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAV 63
             +GGV ++    N+ EI +LARFA+ EHNK+QN  L+F            GT+Y +TLEA 
Sbjct:    35 LGGVHDLRGNQNSGEIESLARFAIQEHNKQQNKILEFKKIVKAREQVVAGTMYHLTLEAK 94

Query:    64 EGGQKKLFEAKVWEKPWMQFKELKEF 89
             EG Q K FEAKVW KPWM FK+L+EF
Sbjct:    95 EGDQTKNFEAKVWVKPWMNFKQLQEF 120

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA;ISS;IDA

GO:0005576 "extracellular region" evidence=ISM

GO:0006972 "hyperosmotic response" evidence=IMP

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0009409 "response to cold" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

TAIR|locus:2177063 CYS1 "cystatin-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 38/87 (43%), Positives = 57/87 (65%)

Query:     4 VGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAV 63
             VGGVR+++A AN+ ++ +LARFAVDEHNK +N  L++            GT++ +T+E  
Sbjct:    10 VGGVRDIDANANDLQVESLARFAVDEHNKNENLTLEYKRLLGAKTQVVAGTMHHLTVEVA 69

Query:    64 EGGQKKLFEAKVWEKPWMQFKELKEFN 90
             +G   K++EAKV EK W   K+L+ FN
Sbjct:    70 DGETNKVYEAKVLEKAWENLKQLESFN 96

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

GO:0034605 "cellular response to heat" evidence=IEP

GO:0042631 "cellular response to water deprivation" evidence=IEP

GO:0070417 "cellular response to cold" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2175294 AT5G05110 [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 39/93 (41%), Positives = 58/93 (62%)

Query:     4 VGGVREVEATANN-QEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEA 62
             +GG  + +   N  +EI ++A FAV EHN+++N+ L+             G LY +TLE 
Sbjct:    45 LGGFSDSKNDWNGGKEIDDIALFAVQEHNRRENAVLELARVLKATEQVVAGKLYRLTLEV 104

Query:    63 VEGGQKKLFEAKVWEKPWMQFKELKEFNTVAQS 95
             +E G+KK++EAKVW KPWM FK+L+EF  +  S
Sbjct:   105 IEAGEKKIYEAKVWVKPWMNFKQLQEFKNIIPS 137

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

UNIPROTKB|Q6TPK4 Q6TPK4 "Cysteine proteinase inhibitor 1" [Actinidia deliciosa (taxid:3627)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 34/92 (36%), Positives = 50/92 (54%)

Query:     1 MATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITL 60
             +   GG R +E+  N+ E+ ++A+FAV EHNK+ N  LQ+            GT Y + +
Sbjct:    26 LVAAGGWRPIESL-NSAEVQDVAQFAVSEHNKQANDELQYQSVVRGYTQVVAGTNYRLVI 84

Query:    61 EAVEGGQKKLFEAKVWEKPWMQFKELKEFNTV 92
              A +G     +EA VW+KPWM F+ L  F  V
Sbjct:    85 AAKDGAVVGNYEAVVWDKPWMHFRNLTSFRKV 116

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IDA

TAIR|locus:2168973 AT5G47550 [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 31/89 (34%), Positives = 47/89 (52%)

Query:     2 ATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLE 61
             A VGG   + +   + ++V +  FAV E+NK+  S L+F            GT Y + + 
Sbjct:    26 ARVGGWSPI-SNVTDPQVVEIGEFAVSEYNKRSESGLKFETVVSGETQVVSGTNYRLKVA 84

Query:    62 AVEG-GQKKLFEAKVWEKPWMQFKELKEF 89
             A +G G  K + A VW+KPWM+F+ L  F
Sbjct:    85 ANDGDGVSKNYLAIVWDKPWMKFRNLTSF 113

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IDA

TAIR|locus:2130709 AT4G16500 [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 29/88 (32%), Positives = 47/88 (53%)

Query:     6 GVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEG 65
             G R+     ++ ++V +A++A++EHNK+    L F            GT YD+ + A +G
Sbjct:    30 GSRKPIKNVSDPDVVAVAKYAIEEHNKESKEKLVFVKVVEGTTQVVSGTKYDLKIAAKDG 89

Query:    66 GQK-KLFEAKVWEKPWMQFKELKEFNTV 92
             G K K +EA V EK W+  K L+ F  +
Sbjct:    90 GGKIKNYEAVVVEKLWLHSKSLESFKAL 117

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0030234 "enzyme regulator activity" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2045537 CYS2 "PHYTOCYSTATIN 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 65 (27.9 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
 Identities = 17/59 (28%), Positives = 27/59 (45%)

Query:    36 SN-LQFXXXXXXXXXXXXGTLYDITLEAVE-GGQKKLFEAKVWEKPWMQFKELKEFNTV 92
             SN LQF            G  Y + +E  +  G  ++F++ V  +PW+  K+L  F  V
Sbjct:    84 SNPLQFSRVVSAQKQVVAGLKYYLRIEVTQPNGSTRMFDSVVVIQPWLHSKQLLGFTPV 142

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0009062 "fatty acid catabolic process" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q06445	CYTI_VIGUN	No assigned EC number	0.6631	0.95	0.9793	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00011145 hypothetical protein (102 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	100
cd00042	105	cd00042, CY, Cystatin-like domain; Cystatins are a	1e-22
smart00043	107	smart00043, CY, Cystatin-like domain	1e-21
pfam00031	92	pfam00031, Cystatin, Cystatin domain	7e-13

>gnl|CDD|238002 cd00042, CY, Cystatin-like domain; Cystatins are a family of cysteine protease inhibitors that occur mainly as single domain proteins

 Score = 84.1 bits (208), Expect = 1e-22
 Identities = 48/107 (44%), Positives = 59/107 (55%), Gaps = 22/107 (20%)

Query: 5   GGVREVEATANNQEIVNLARFAVDEHNKKQN-SNLQFVKVVSAKQQVVSGTLYDITLEAV 63
           GG  ++ A  N+ E+  LA FAV E+NKK N   L+F KV+SAK QVV+GT Y IT+EA 
Sbjct: 1   GGPSDIPA--NDPEVQELADFAVAEYNKKSNDKYLEFFKVLSAKSQVVAGTNYYITVEAG 58

Query: 64  EG-------------------GQKKLFEAKVWEKPWMQFKELKEFNT 91
           +                    G+KK   AKVWEKPW  FKEL  F  
Sbjct: 59  DTNCKKSSVPLDCPDCKLLEEGKKKFCTAKVWEKPWENFKELLSFKC 105

However some extracellular proteins such as kininogen, His-rich glycoprotein and fetuin also contain these domains. Length = 105

>gnl|CDD|214484 smart00043, CY, Cystatin-like domain

 Score = 80.9 bits (200), Expect = 1e-21
 Identities = 43/105 (40%), Positives = 54/105 (51%), Gaps = 20/105 (19%)

Query: 4   VGGVREVEATANNQEIVNLARFAVDEHNKKQNSN--LQFVKVVSAKQQVVSGTLYDITLE 61
           +GG  +V    N+ E+   A FAV E+NKK N    L+ +KVVSAK QVV+GT Y + +E
Sbjct: 3   LGGPSDVPP--NDPEVQEAADFAVAEYNKKSNDKYELRVIKVVSAKSQVVAGTNYYLKVE 60

Query: 62  AVEGGQKKL----------------FEAKVWEKPWMQFKELKEFN 90
             E   KKL                  AKVWEKPW    +L EF 
Sbjct: 61  VGETNCKKLSVDLENCPFLDQGEKFCTAKVWEKPWENKIKLVEFK 105

Cystatins are a family of cysteine protease inhibitors that occur mainly as single domain proteins. However some extracellular proteins such as kininogen, His-rich glycoprotein and fetuin also contain these domains. Length = 107

>gnl|CDD|215667 pfam00031, Cystatin, Cystatin domain

 Score = 58.5 bits (142), Expect = 7e-13
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 7/93 (7%)

Query: 5  GGVREVEATANNQEIVNLARFAVDEHNKK-QNSNLQFVKVVSAKQQVVSGTLYDITLEAV 63
          GG+       N+ E+     FA+ ++N K  N   + V+V+ AK QVV+G  Y I +E  
Sbjct: 1  GGLSPAND--NDPEVQEALDFALAKYNAKSNNYYFELVEVLRAKSQVVAGMNYYIKVEVG 58

Query: 64 EG---GQKKLFEAKVW-EKPWMQFKELKEFNTV 92
          E      KK  E     ++    F + + F   
Sbjct: 59 ETNCSKSKKDLEDCPLLDEKQEGFCKAQVFKKP 91

Very diverse family. Attempts to define separate sub-families failed. Typically, either the N-terminal or C-terminal end is very divergent. But splitting into two domains would make very short families. pfam00666 are related to this family but have not been included. Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	100
cd00042	105	CY Substituted updates: Jan 30, 2002	99.93
smart00043	107	CY Cystatin-like domain. Cystatins are a family of	99.93
PF00031	94	Cystatin: Cystatin domain; InterPro: IPR000010 Pep	99.88
PF07430	202	PP1: Phloem filament protein PP1; InterPro: IPR009	99.61
PF07430	202	PP1: Phloem filament protein PP1; InterPro: IPR009	99.15
TIGR01638	92	Atha_cystat_rel Arabidopsis thaliana cystatin-rela	99.08
PF06907	220	Latexin: Latexin; InterPro: IPR009684 This family	97.46
TIGR01572	265	A_thl_para_3677 Arabidopsis paralogous family TIGR	96.2
PF05679	499	CHGN: Chondroitin N-acetylgalactosaminyltransferas	83.33

>cd00042 CY Substituted updates: Jan 30, 2002

Probab=99.93  E-value=2.5e-25  Score=140.16  Aligned_cols=85  Identities=56%  Similarity=0.859  Sum_probs=80.0

Q ss_pred             ceeEEcCCCCCcHHHHHHHHHHHHHhhhcCCCc-eeEEEEEEEEEEeccceEEEEEEEEeeC------------------
Q 034268            5 GGVREVEATANNQEIVNLARFAVDEHNKKQNSN-LQFVKVVSAKQQVVSGTLYDITLEAVEG------------------   65 (100)
Q Consensus         5 GG~~~~~~~~~d~~v~~~a~~Av~~~n~~~~~~-~~~~~V~~a~~QVVaG~nY~i~v~~~~~------------------   65 (100)
                      |||.+++  .+||++++++++|+.+||+++++. |.+.+|++|++|||+|++|+|+|++.++                  
T Consensus         1 gg~~~~~--~~d~~~~~~~~~a~~~~N~~~~~~~~~~~~i~~~~~QvvaG~~y~i~~~~~~t~C~k~~~~~~~~~c~~~~   78 (105)
T cd00042           1 GGPSDIP--ANDPEVQELADFAVAEYNKKSNDKYLEFFKVLSAKSQVVAGTNYYITVEAGDTNCKKSSVPLDCPDCKLLE   78 (105)
T ss_pred             CCCccCC--CCCHHHHHHHHHHHHHHHhhcCccceeEEEEEEEEEEEEeeeEEEEEEEEecccccccCcccccccccccc
Confidence            8999996  999999999999999999998887 7889999999999999999999999863                  


Q ss_pred             -CeeEEEEEEEEEecCCCceeeEEEEe
Q 034268           66 -GQKKLFEAKVWEKPWMQFKELKEFNT   91 (100)
Q Consensus        66 -~~~~~c~~~V~~~pW~~~~~l~~f~~   91 (100)
                       +....|.+.||.+||.+..+|++++|
T Consensus        79 ~~~~~~C~~~V~~~pw~~~~~l~~~~C  105 (105)
T cd00042          79 EGKKKFCTAKVWEKPWENFKELLSFKC  105 (105)
T ss_pred             cCCCEEEEEEEEecCCCCceeeeeccC
Confidence             56889999999999999999999988

>smart00043 CY Cystatin-like domain

Probab=99.93  E-value=1.5e-25  Score=141.71  Aligned_cols=88  Identities=47%  Similarity=0.674  Sum_probs=80.0

Q ss_pred             ccceeEEcCCCCCcHHHHHHHHHHHHHhhhcCCCcee--EEEEEEEEEEeccceEEEEEEEEeeCCee------------
Q 034268            3 TVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQ--FVKVVSAKQQVVSGTLYDITLEAVEGGQK------------   68 (100)
Q Consensus         3 ~~GG~~~~~~~~~d~~v~~~a~~Av~~~n~~~~~~~~--~~~V~~a~~QVVaG~nY~i~v~~~~~~~~------------   68 (100)
                      ++|||++++  .+||++++++++|+.+||+++++.|.  +++|++|++|||+|++|+|+|++.++.-.            
T Consensus         2 ~~Gg~~~~~--~~d~~~~~~~~~a~~~~N~~~~~~~~~~~~~v~~a~~QvvaG~~y~l~~~v~~t~C~k~~~~~~~C~~~   79 (107)
T smart00043        2 CLGGPSDVP--PNDPEVQEAADFAVAEYNKKSNDKYELRVIKVVSAKSQVVAGTNYYLKVEVGETNCKKLSVDLENCPFL   79 (107)
T ss_pred             CCCCCccCC--CCCHHHHHHHHHHHHHHHHhcccchhhhhhhhheeeeeeecceEEEEEEEEEeceeccCCcccccCCCC
Confidence            689999997  89999999999999999999988876  79999999999999999999999974211            


Q ss_pred             ----EEEEEEEEEecCCCceeeEEEEec
Q 034268           69 ----KLFEAKVWEKPWMQFKELKEFNTV   92 (100)
Q Consensus        69 ----~~c~~~V~~~pW~~~~~l~~f~~~   92 (100)
                          ..|.++||.+||+++.++++|+|.
T Consensus        80 ~~~~~~C~~~V~~~pw~~~~~~~~~~C~  107 (107)
T smart00043       80 DQGEKFCTAKVWEKPWENKIKLVEFKCT  107 (107)
T ss_pred             CCCccEEEEEEEecCCCCccCccceecC
Confidence                589999999999999999999983

Cystatins are a family of cysteine protease inhibitors that occur mainly as single domain proteins. However some extracellular proteins such as kininogen, His-rich glycoprotein and fetuin also contain these domains.

>PF00031 Cystatin: Cystatin domain; InterPro: IPR000010 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively

Probab=99.88  E-value=8.7e-22  Score=121.63  Aligned_cols=74  Identities=42%  Similarity=0.706  Sum_probs=67.6

Q ss_pred             ceeEEcCCCCCcHHHHHHHHHHHHHhhhcCCC--ceeEEEEEEEEEEeccceEEEEEEEEeeC-----------------
Q 034268            5 GGVREVEATANNQEIVNLARFAVDEHNKKQNS--NLQFVKVVSAKQQVVSGTLYDITLEAVEG-----------------   65 (100)
Q Consensus         5 GG~~~~~~~~~d~~v~~~a~~Av~~~n~~~~~--~~~~~~V~~a~~QVVaG~nY~i~v~~~~~-----------------   65 (100)
                      |||++++  ++||++++++++|+.+||+++++  .|.+.+|++|++|||+|++|+|+|.++++                 
T Consensus         1 Gg~~~~~--~~dp~v~~~~~~al~~~N~~~~~~~~~~~~~v~~a~~QvV~G~~Y~i~~~~~~t~C~k~~~~~~~C~~~~~   78 (94)
T PF00031_consen    1 GGPSPVD--PNDPEVQEAAEFALDKFNEQSNSGYKFKLVKVISATTQVVAGINYYIEFEVGETNCKKSSKDFENCPFQEE   78 (94)
T ss_dssp             SSEEEEC--TTSHHHHHHHHHHHHHHHHHSTTSEEEEEEEEEEEEEEESSSEEEEEEEEEEEEEEETCEEEEEECEBEST
T ss_pred             CCCccCC--CCCHHHHHHHHHHHHHHHHhCcccCcceeeeeeEEEEeecCCceEEEEEEEEcccccccccccccCCcccc
Confidence            9999997  89999999999999999999855  46789999999999999999999999862                 


Q ss_pred             -CeeEEEEEEEEEecC
Q 034268           66 -GQKKLFEAKVWEKPW   80 (100)
Q Consensus        66 -~~~~~c~~~V~~~pW   80 (100)
                       .....|.++||.+||
T Consensus        79 ~~~~~~C~~~v~~~pW   94 (94)
T PF00031_consen   79 QPWTKFCKFTVWERPW   94 (94)
T ss_dssp             TSSEEEEEEEEEEECG
T ss_pred             CCceeeEEEEEEECCC
Confidence             567789999999999

In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The cystatins are cysteine proteinase inhibitors belonging to MEROPS inhibitor family I25, clan IH [, , ]. They mainly inhibit peptidases belonging to peptidase families C1 (papain family) and C13 (legumain family). The cystatin family includes: The Type 1 cystatins, which are intracellular cystatins that are present in the cytosol of many cell types, but can also appear in body fluids at significant concentrations. They are single-chain polypeptides of about 100 residues, which have neither disulphide bonds nor carbohydrate side chains. The Type 2 cystatins, which are mainly extracellular secreted polypeptides synthesised with a 19-28 residue signal peptide. They are broadly distributed and found in most body fluids. The Type 3 cystatins, which are multidomain proteins. The mammalian representatives of this group are the kininogens. There are three different kininogens in mammals: H- (high molecular mass, IPR002395 from INTERPRO) and L- (low molecular mass) kininogen which are found in a number of species, and T-kininogen that is found only in rat. Unclassified cystatins. These are cystatin-like proteins found in a range of organisms: plant phytocystatins, fetuin in mammals, insect cystatins and a puff adder venom cystatin which inhibits metalloproteases of the MEROPS peptidase family M12 (astacin/adamalysin). Also a number of the cystatins-like proteins have been shown to be devoid of inhibitory activity. All true cystatins inhibit cysteine peptidases of the papain family (MEROPS peptidase family C1), and some also inhibit legumain family enzymes (MEROPS peptidase family C13). These peptidases play key roles in physiological processes, such as intracellular protein degradation (cathepsins B, H and L), are pivotal in the remodelling of bone (cathepsin K), and may be important in the control of antigen presentation (cathepsin S, mammalian legumain). Moreover, the activities of such peptidases are increased in pathophysiological conditions, such as cancer metastasis and inflammation. Additionally, such peptidases are essential for several pathogenic parasites and bacteria. Thus in animals cystatins not only have capacity to regulate normal body processes and perhaps cause disease when down-regulated, but in other organisms may also participate in defence against biotic and abiotic stress. ; GO: 0004869 cysteine-type endopeptidase inhibitor activity; PDB: 3L0R_B 2W9P_K 2W9Q_A 3S67_A 3QRD_D 1R4C_G 3GAX_A 1TIJ_B 1G96_A 3NX0_A ....

>PF07430 PP1: Phloem filament protein PP1; InterPro: IPR009994 This domain represents a conserved region approximately 200 residues long, four copies of which are found within the plant phloem filament protein PP1

Probab=99.61  E-value=1.5e-14  Score=99.46  Aligned_cols=82  Identities=32%  Similarity=0.408  Sum_probs=73.3

Q ss_pred             cceeEEcCCCCCcHHHHHHHHHHHHHhhhcCCCceeEEEEEEEEEEecc--ceEEEEEEEEeeC-CeeEEEEEEEEEe-c
Q 034268            4 VGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVS--GTLYDITLEAVEG-GQKKLFEAKVWEK-P   79 (100)
Q Consensus         4 ~GG~~~~~~~~~d~~v~~~a~~Av~~~n~~~~~~~~~~~V~~a~~QVVa--G~nY~i~v~~~~~-~~~~~c~~~V~~~-p   79 (100)
                      ..+|.+++ |.++|.+|++++||+.+|| +.++.++|.+|.+++.|=++  |++|+|++.+.|+ ++...|+|.||+. +
T Consensus       114 ~~~Wi~I~-nin~p~VQeLgkFAV~EhN-K~gd~LkF~KV~eGw~q~l~~d~ikYrLhI~AkDg~G~~~~YeAvV~~k~~  191 (202)
T PF07430_consen  114 SKKWIPIP-NINNPFVQELGKFAVIEHN-KAGDKLKFEKVYEGWYQDLGNDGIKYRLHIVAKDGLGRLGNYEAVVWEKQF  191 (202)
T ss_pred             cCCCEECC-CCCcHHHHHHHHHHHHHHh-hcCCceEEEEEeeEEEEeccCCCceEEEEEEeecCCCCcCceEEEEEEecc
Confidence            35799998 9999999999999999999 67889999999999999885  6999999999997 8999999999998 5


Q ss_pred             CCCceeeE
Q 034268           80 WMQFKELK   87 (100)
Q Consensus        80 W~~~~~l~   87 (100)
                      |.+..+++
T Consensus       192 ~sk~i~i~  199 (202)
T PF07430_consen  192 LSKKIKIL  199 (202)
T ss_pred             CcceEEEE
Confidence            77665554

This is one of the constituents of the proteinaceous filaments found in the sieve elements of Cucurbita phloem [].

>PF07430 PP1: Phloem filament protein PP1; InterPro: IPR009994 This domain represents a conserved region approximately 200 residues long, four copies of which are found within the plant phloem filament protein PP1

Probab=99.15  E-value=9.2e-11  Score=80.88  Aligned_cols=89  Identities=17%  Similarity=0.271  Sum_probs=80.6

Q ss_pred             cccceeEEcCCCCCcHHHHHHHHHHHHHhhhcCCCceeEEEEEEEE--EEeccceEEEEEEEEee-CCeeEEEEEEEEEe
Q 034268            2 ATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAK--QQVVSGTLYDITLEAVE-GGQKKLFEAKVWEK   78 (100)
Q Consensus         2 ~~~GG~~~~~~~~~d~~v~~~a~~Av~~~n~~~~~~~~~~~V~~a~--~QVVaG~nY~i~v~~~~-~~~~~~c~~~V~~~   78 (100)
                      ...+||.+++ |..+|.+|+++++|+.+++.+.+..++|..|.+++  .|.+.+++|++++++.| -++...|.+.|+++
T Consensus         5 ~~~~~w~~ip-~v~~~~~q~v~~~~veq~k~~~~~~l~~~~v~egwy~el~~~~~~yrlhv~a~d~l~r~l~~e~ii~e~   83 (202)
T PF07430_consen    5 PFSPKWIKIP-DVKEPCLQEVAKFAVEQFKIQYGDSLKFRSVVEGWYFELCPNSLKYRLHVKAIDFLGRSLKYEAIIIEE   83 (202)
T ss_pred             ccCcccccCC-cccchHHHHHHHHHHHHHhhhcccceeeeeeeeceeecccccceeEEEeehhhhhhccccceeeeeeeh
Confidence            3468999999 99999999999999999999999999999999999  67889999999999988 47889999999998


Q ss_pred             c--CCCceeeEEEEe
Q 034268           79 P--WMQFKELKEFNT   91 (100)
Q Consensus        79 p--W~~~~~l~~f~~   91 (100)
                      -  |++.++|.|+.-
T Consensus        84 ~~~~~~~~kl~s~l~   98 (202)
T PF07430_consen   84 KPQLTRIRKLASILA   98 (202)
T ss_pred             hhhhhhhhhhheeeE
Confidence            5  999999888753

This is one of the constituents of the proteinaceous filaments found in the sieve elements of Cucurbita phloem [].

>TIGR01638 Atha_cystat_rel Arabidopsis thaliana cystatin-related protein

Probab=99.08  E-value=5.5e-10  Score=69.10  Aligned_cols=65  Identities=25%  Similarity=0.161  Sum_probs=56.2

Q ss_pred             CCcHHHHHHHHHHHHHhhhcCCCceeEEEEEEEEEEeccceEEEEEEEEeeC---CeeEEEEEEEEEe
Q 034268           14 ANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITLEAVEG---GQKKLFEAKVWEK   78 (100)
Q Consensus        14 ~~d~~v~~~a~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~nY~i~v~~~~~---~~~~~c~~~V~~~   78 (100)
                      .+..-+++++..|+++||+..+..++|++|++|..|..+|.+|+|+|.+.|.   ...+.+++.||..
T Consensus        10 T~rd~~~~la~~al~k~N~~~~t~lEfV~vVrAn~~~~~g~~~yITF~Ard~~d~p~~e~~q~~v~~~   77 (92)
T TIGR01638        10 TNRDLLERLSYVASKKYNDTKFLNLELVEVVRANYRGGAKSKSYITFEARDKPDGPLGEYQQAAVVYL   77 (92)
T ss_pred             CHHHHHHHHHHHHHHHhhhhcCceEEEEEEEEEEeeccceEEEEEEEEEecCCCCCHHHhhheeeEec
Confidence            5666788999999999999999999999999999999999999999999982   3445667777663

This model represents a family similar in sequence and probably homologous to a large family of cysteine proteinase inhibitors, or cystatins, as described by pfam model pfam00031. Cystatins may help plants resist attack by insects.

>PF06907 Latexin: Latexin; InterPro: IPR009684 This family consists of several animal specific latexin and proteins related to latexin that belong to MEROPS proteinase inhibitor family I47, clan I- []

Probab=97.46  E-value=0.0046  Score=43.82  Aligned_cols=81  Identities=19%  Similarity=0.174  Sum_probs=57.4

Q ss_pred             CCcHHHHHHHHHHHHHhhhcCCCce---eEEEEEEEEEEecc--ceEEEEEEEEee---CCeeEEEEEEEEEecCCCcee
Q 034268           14 ANNQEIVNLARFAVDEHNKKQNSNL---QFVKVVSAKQQVVS--GTLYDITLEAVE---GGQKKLFEAKVWEKPWMQFKE   85 (100)
Q Consensus        14 ~~d~~v~~~a~~Av~~~n~~~~~~~---~~~~V~~a~~QVVa--G~nY~i~v~~~~---~~~~~~c~~~V~~~pW~~~~~   85 (100)
                      ++.=..+++|+.|+.-+|-..|+.+   .+.+|.+|...+++  |-+|.|+|.+.+   +.....|.|+|+-. -.+..-
T Consensus         4 p~h~~a~rAA~va~hy~N~~~GSP~~l~~l~~V~~a~~e~ip~~G~Ky~L~FSte~~~~~e~~g~CsA~V~f~-~qkp~P   82 (220)
T PF06907_consen    4 PSHRPAQRAARVAQHYINYRAGSPSRLFVLQQVQKARAEDIPGEGCKYDLVFSTEEYIEGEHLGNCSAEVFFK-NQKPRP   82 (220)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHH-BTTB-EEEEEEEEEEEEEETTTEEEEEEEEEEEETTT---EEEEEEEEEET-T-----
T ss_pred             CcchHHHHHHHHHHHHhccccCCCceeeehhhhhhhhheeccCCCCEEEEEEEhHHhhcCCceeEeEEEEEec-CCCCCC
Confidence            4444578999999999999988754   46899999999885  679999999987   56888999999982 233345


Q ss_pred             eEEEEecCCC
Q 034268           86 LKEFNTVAQS   95 (100)
Q Consensus        86 l~~f~~~~~~   95 (100)
                      -..+.|.+-.
T Consensus        83 ~V~vtc~~~~   92 (220)
T PF06907_consen   83 AVNVTCTGLI   92 (220)
T ss_dssp             EEEEEECS--
T ss_pred             cEEEEEEecc
Confidence            6788887643

Latexin, a protein possessing inhibitory activity against rat carboxypeptidase A1 (CPA1) and CPA2 (MEROPS peptidase family M14A), is expressed in a neuronal subset in the cerebral cortex and cells in other neural and non-neural tissues of rat [, ]. OCX-32, the 32 kDa eggshell matrix protein, is present at high levels in the uterine fluid during the terminal phase of eggshell formation, and is localised predominantly in the outer eggshell. The timing of OCX-32 secretion into the uterine fluid suggests that it may play a role in the termination of mineral deposition []. OCX-32 protein possesses limited identity (32%) to two unrelated proteins: latexin and to a skin protein that is encoded by a retinoic acid receptor-responsive gene, TIG1. Tazarotene Induced Gene 1 (TIG1) is a putative 228 transmembrane protein with a small N-terminal intracellular region, a single membrane-spanning hydrophobic region, and a large C-terminal extracellular region containing a glycosylation signal. TIG1 is up-regulated by retinoic acid receptor but not by retinoid X receptor-specific synthetic retinoids []. TIG1 may be a tumour suppressor gene whose diminished expression is involved in the malignant progression of prostate cancer [].; PDB: 1WNH_A 2BO9_B.

>TIGR01572 A_thl_para_3677 Arabidopsis paralogous family TIGR01572

Probab=96.20  E-value=0.035  Score=40.45  Aligned_cols=75  Identities=21%  Similarity=0.203  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHhhhcCCCceeEEEEEEEEEEeccceEEEEEEEEeeC---CeeEEEEEEEEEecCCCceeeEEEEecCC
Q 034268           19 IVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITLEAVEG---GQKKLFEAKVWEKPWMQFKELKEFNTVAQ   94 (100)
Q Consensus        19 v~~~a~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~nY~i~v~~~~~---~~~~~c~~~V~~~pW~~~~~l~~f~~~~~   94 (100)
                      ++-.|+.++--||-..|++|+|..|.+.-++..+-+.|.|++.+.|.   +..+.|+..|.++- .++..|+-.-|.+-
T Consensus        42 vklyAr~GLH~YN~~~GTNlel~~v~K~N~~~~~~~syyITL~A~DP~s~~s~qTFQtrV~e~~-~~~L~ltt~iaRpK  119 (265)
T TIGR01572        42 VKIYARVGLHRYNFLEGTNLELDHVDKFNKRMCALSSYYITLLAVDPDSRFLQQTFQVRVDEQK-LETLDLTVEIARPK  119 (265)
T ss_pred             HHHHHHhhhhhhhhccCccceehhhhhhccchhhheeeeEEEEEecCCccccceEEEEEEEecc-CCcEEEEEEEEeeC
Confidence            68899999999999999999999999999999999999999999983   57888999997753 34455555555433

This model describes a paralogous family of hypothetical proteins in Arabidopsis thaliana. No homologs are detected from other species. Length heterogeneity within the family is attributable partly to a 21-residue repeat present in from zero to three tandem copies. The central region of the repeat resembles the pattern [VIF][FY][QK]GX[LM]P[DEK]XXXDDAL.

>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase

Probab=83.33  E-value=6.7  Score=31.05  Aligned_cols=50  Identities=18%  Similarity=0.313  Sum_probs=43.0

Q ss_pred             CcHHHHHHHHHHHHHhhhcCCCceeEEEEEEEEEEe--ccceEEEEEEEEee
Q 034268           15 NNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQV--VSGTLYDITLEAVE   64 (100)
Q Consensus        15 ~d~~v~~~a~~Av~~~n~~~~~~~~~~~V~~a~~QV--VaG~nY~i~v~~~~   64 (100)
                      .-.++.++...|+...|+.....++|.+++.+-..+  .-|+.|.|++.+..
T Consensus       159 ~~~dl~~vi~~a~~~ln~~~~~~~~~~~l~~GY~R~dp~rG~~Y~Ldl~l~~  210 (499)
T PF05679_consen  159 DREDLDDVIEQAMEELNRKSRRVLEFRDLINGYRRFDPTRGMDYILDLLLKY  210 (499)
T ss_pred             hHHHHHHHHHHHHHHHhccccccEEeeeeeeEEEEecCCCCceEEEEEEEee
Confidence            346788999999999999987889999999998775  57999999998765

Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	100
1eqk_A	102	Solution Structure Of Oryzacystatin-I, A Cysteine P		7e-21
3ima_B	91	Complex Strcuture Of Tarocystatin And Papain Length		2e-19
3ul5_A	139	Saccharum Officinarum Canecystatin-1 In Space Group		7e-15
2l4v_A	135	Three Dimensional Structure Of Pineapple Cystatin L		9e-13
2w9p_A	87	Crystal Structure Of Potato Multicystatin Length =		9e-12

>pdb|1EQK|A Chain A, Solution Structure Of Oryzacystatin-I, A Cysteine Proteinase Inhibitor Of The Rice, Oryza Sativa L. Japonica Length = 102

Iteration: 1
 Score = 95.5 bits (236), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 50/94 (53%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 2  ATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLE 61
            +GGV  V    N+  +V+LARFAV EHNKK NS L+F            GTLY  T+E
Sbjct: 7  PVLGGVEPV-GNENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTIE 65
Query: 62 AVEGGQKKLFEAKVWEKPWMQFKELKEFNTVAQS 95
            EG  KKL+EAKVWEKPWM FKEL+EF  V  S
Sbjct: 66 VKEGDAKKLYEAKVWEKPWMDFKELQEFKPVDAS 99

>pdb|3IMA|B Chain B, Complex Strcuture Of Tarocystatin And Papain Length = 91

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 41/91 (45%), Positives = 61/91 (67%)
Query: 2  ATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLE 61
          A +GG+ +VE   N+ E+  LARFAVDEHNKK+N+ LQF            G ++ +T+E
Sbjct: 1  ALMGGIVDVEGAQNSAEVEELARFAVDEHNKKENALLQFSRLVKAKQQVVSGIMHHLTVE 60
Query: 62 AVEGGQKKLFEAKVWEKPWMQFKELKEFNTV 92
           +EGG+KK++EAKVW + W+  K+L EF+ +
Sbjct: 61 VIEGGKKKVYEAKVWVQAWLNSKKLHEFSPI 91

>pdb|3UL5|A Chain A, Saccharum Officinarum Canecystatin-1 In Space Group C2221 Length = 139

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 56/97 (57%), Gaps = 2/97 (2%)
Query: 1   MATVGGVREVEATA-NNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDIT 59
           +  VG VR+  A   N+ E + LARFAV EHN K N+ L+F            GT++  T
Sbjct: 43  VGMVGDVRDAPAGHENDLEAIELARFAVAEHNSKTNAMLEFERLVKVRHQVVAGTMHHFT 102
Query: 60  LEAVE-GGQKKLFEAKVWEKPWMQFKELKEFNTVAQS 95
           ++  E GG KKL+EAKVWEK W  FK+L+ F  V  +
Sbjct: 103 VQVKEAGGGKKLYEAKVWEKVWENFKQLQSFQPVGDA 139

>pdb|2L4V|A Chain A, Three Dimensional Structure Of Pineapple Cystatin Length = 135

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 58/97 (59%), Gaps = 5/97 (5%)
Query: 2   ATVGGVREVEATANNQ---EIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDI 58
             +GG+   +A  NN+   +  +LARFAV E+N K N+ L+F            G ++ +
Sbjct: 41  PIMGGI--YDAPLNNENGFDKEDLARFAVREYNNKNNALLEFVRVVKAKEQVVSGMMHYL 98
Query: 59  TLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNTVAQS 95
           T+E  + G+KKL+EAKVWE+ WM F++L+EF  +  +
Sbjct: 99  TVEVNDAGKKKLYEAKVWEQVWMNFRQLQEFTYLGDA 135

>pdb|2W9P|A Chain A, Crystal Structure Of Potato Multicystatin Length = 87

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 15 NNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAV-EGGQKKLFEA 73
          NN +   LARFA+ ++NKKQN++L+F            G +Y ITL A  + G+KK+++A
Sbjct: 9  NNTKFQELARFAIQDYNKKQNAHLEFVENLNVKEQVVAGIMYYITLAATDDAGKKKIYKA 68
Query: 74 KVWEKPWMQFKELKEFNTV 92
          K+W K W  FK++ EF  V
Sbjct: 69 KIWVKEWEDFKKVVEFKLV 87

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	100
3ima_B	91	Cysteine proteinase inhibitor; cystatin, tarocysta	7e-35
2l4v_A	135	Cystatin; protease inhibitor, hydrolase inhibitor;	1e-34
1eqk_A	102	Oryzacystatin-I; alpha and beta proteins, cystatin	2e-33
2w9q_A	87	Multicystatin; protease inhibitor, thiol protease	2e-31
3l0r_A	115	Cystatin-2, OMC2; SOFT TICK, protease inhibitor, t	1e-22
3mwz_A	115	Sialostatin L2; antiparallel beta-sheet, hydrolase	2e-17
2ch9_A	131	Cystatin F; inhibitor, cysteine protease inhibitor	2e-17
3gax_A	120	Cystatin-C; cysteine protease inhibitor, 3D domain	5e-17
1yvb_I	111	Cystatin; cysteine protease-inhibitor complex, hyd	2e-16
1roa_A	122	Cystatin D; inhibitor of cysteine pepidases, prote	5e-16
2kxg_A	95	Aspartic protease inhibitor; sqapi, protein, hydro	2e-09
1cyu_A	98	Cystatin A, stefin A; proteinase inhibitor (cystei	2e-04
2oct_A	98	Cystatin B; stefin, amyloid, domain-swapping, hand	3e-04

>3ima_B Cysteine proteinase inhibitor; cystatin, tarocystatin, cecpi, papain, phytocystatin, allergen, disulfide bond, hydrolase, protease; 2.03A {Colocasia esculenta} Length = 91

 Score =  113 bits (285), Expect = 7e-35
 Identities = 49/91 (53%), Positives = 71/91 (78%)

Query: 2  ATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITLE 61
          A +GG+ +VE   N+ E+  LARFAVDEHNKK+N+ LQF ++V AKQQVVSG ++ +T+E
Sbjct: 1  ALMGGIVDVEGAQNSAEVEELARFAVDEHNKKENALLQFSRLVKAKQQVVSGIMHHLTVE 60

Query: 62 AVEGGQKKLFEAKVWEKPWMQFKELKEFNTV 92
           +EGG+KK++EAKVW + W+  K+L EF+ +
Sbjct: 61 VIEGGKKKVYEAKVWVQAWLNSKKLHEFSPI 91

>2l4v_A Cystatin; protease inhibitor, hydrolase inhibitor; NMR {Ananas comosus} Length = 135

 Score =  114 bits (286), Expect = 1e-34
 Identities = 43/96 (44%), Positives = 66/96 (68%), Gaps = 1/96 (1%)

Query: 1   MATVGGVREVEAT-ANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDIT 59
              +GG+ +      N  +  +LARFAV E+N K N+ L+FV+VV AK+QVVSG ++ +T
Sbjct: 40  HPIMGGIYDAPLNNENGFDKEDLARFAVREYNNKNNALLEFVRVVKAKEQVVSGMMHYLT 99

Query: 60  LEAVEGGQKKLFEAKVWEKPWMQFKELKEFNTVAQS 95
           +E  + G+KKL+EAKVWE+ WM F++L+EF  +  +
Sbjct: 100 VEVNDAGKKKLYEAKVWEQVWMNFRQLQEFTYLGDA 135

>1eqk_A Oryzacystatin-I; alpha and beta proteins, cystatin-like fold, cystatin/monellin superfamily, phytocystatin family; NMR {Oryza sativa japonica group} SCOP: d.17.1.2 Length = 102

 Score =  110 bits (276), Expect = 2e-33
 Identities = 58/98 (59%), Positives = 70/98 (71%), Gaps = 1/98 (1%)

Query: 1   MATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITL 60
              +GGV  V    N+  +V+LARFAV EHNKK NS L+F K+VS KQQVV+GTLY  T+
Sbjct: 6   GPVLGGVEPVGN-ENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTI 64

Query: 61  EAVEGGQKKLFEAKVWEKPWMQFKELKEFNTVAQSHSS 98
           E  EG  KKL+EAKVWEKPWM FKEL+EF  V  S ++
Sbjct: 65  EVKEGDAKKLYEAKVWEKPWMDFKELQEFKPVDASANA 102

>2w9q_A Multicystatin; protease inhibitor, thiol protease inhibitor, hydrolase inhibitor; 2.50A {Solanum tuberosum} PDB: 2w9p_A Length = 87

 Score =  104 bits (261), Expect = 2e-31
 Identities = 38/80 (47%), Positives = 59/80 (73%), Gaps = 1/80 (1%)

Query: 14 ANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITLEAVE-GGQKKLFE 72
           NN +   LARFA+ ++NKKQN++L+FV+ ++ K+QVV+G +Y ITL A +  G+KK+++
Sbjct: 8  PNNTKFQELARFAIQDYNKKQNAHLEFVENLNVKEQVVAGIMYYITLAATDDAGKKKIYK 67

Query: 73 AKVWEKPWMQFKELKEFNTV 92
          AK+W K W  FK++ EF  V
Sbjct: 68 AKIWVKEWEDFKKVVEFKLV 87

>3l0r_A Cystatin-2, OMC2; SOFT TICK, protease inhibitor, thiol protease INHI hydrolase inhibitor; 2.45A {Ornithodoros moubata} Length = 115

 Score = 83.3 bits (205), Expect = 1e-22
 Identities = 21/108 (19%), Positives = 34/108 (31%), Gaps = 21/108 (19%)

Query: 2   ATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITLE 61
           +  GG    +        + LA FA     + +      V V   + QVV+G  Y +T+E
Sbjct: 2   SIPGGWTRQDP--TEARFLELAHFATSSQTEGREFYDTVVTVKEVETQVVAGMNYKLTIE 59

Query: 62  AVE-------------------GGQKKLFEAKVWEKPWMQFKELKEFN 90
                                   QK    A ++  PW   K +  + 
Sbjct: 60  ISPSVCKIGEVQYSAEQCVPKDAQQKSTCVAVIYHVPWQNQKSVTSYR 107

>3mwz_A Sialostatin L2; antiparallel beta-sheet, hydrolase inhibitor; HET: MSE; 1.52A {Ixodes scapularis} PDB: 3lh4_A 3li7_A Length = 115

 Score = 70.5 bits (172), Expect = 2e-17
 Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 23/111 (20%)

Query: 1   MATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQF---VKVVSAKQQVVSGTLYD 57
           +A  GG RE     ++ E + +A +A    + +Q     F   V+V+  + Q V+GT Y 
Sbjct: 3   LALRGGYRERSNQ-DDPEYLEMAHYATSTWSAQQPGKTHFDTVVEVMKVETQTVAGTNYR 61

Query: 58  ITLEAVE------------------GGQKKLFEAKVWEKPWMQFKELKEFN 90
           +TL+  E                     ++     ++       K +  F 
Sbjct: 62  LTLKVAESTCELTSTYNKDTCQANANAAQRTCTTVIYR-NMQGEKSINSFE 111

>2ch9_A Cystatin F; inhibitor, cysteine protease inhibitor, glycoprotein; HET: NAG FUL; 2.10A {Homo sapiens} Length = 131

 Score = 70.6 bits (172), Expect = 2e-17
 Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 25/110 (22%)

Query: 4   VGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQF--VKVVSAKQQVVSGTLYDITLE 61
            G  + +    N+  ++  AR++V++ N   N    F   ++  A  Q+V G  Y + +E
Sbjct: 17  PGFPKTI--KTNDPGVLQAARYSVEKFNNCTNDMFLFKESRITRALVQIVKGLKYMLEVE 74

Query: 62  AVE---------------------GGQKKLFEAKVWEKPWMQFKELKEFN 90
                                     Q     ++VW  PW+Q  E+    
Sbjct: 75  IGRTTCKKNQHLRLDDCDFQTNHTLKQTLSCYSEVWVVPWLQHFEVPVLR 124

>3gax_A Cystatin-C; cysteine protease inhibitor, 3D domain swapping, protein AGG amyloid, protein engineering, twinning; 1.70A {Homo sapiens} PDB: 1g96_A 1tij_A 3qrd_A 3ps8_A 3nx0_A 1r4c_A Length = 120

 Score = 69.4 bits (169), Expect = 5e-17
 Identities = 22/109 (20%), Positives = 38/109 (34%), Gaps = 24/109 (22%)

Query: 4   VGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQF--VKVVSAKQQVVSGTLYDITLE 61
           VGG  +       + +     FAV E+NK  N        +VV A++Q+V+G  Y + +E
Sbjct: 10  VGGPMDASV--EEEGVRRALDFAVGEYNKASNDMYHSRACQVVRARKQIVAGVNYFLDVE 67

Query: 62  AVE--------------------GGQKKLFEAKVWEKPWMQFKELKEFN 90
                                    +K     +++  PW     L +  
Sbjct: 68  LCRTTCTKTQPNLDNCPFHDQPHLKRKAFCSFQIYAVPWQGTMTLSKST 116

>1yvb_I Cystatin; cysteine protease-inhibitor complex, hydrolase-hydrolase INH complex; 2.70A {Gallus gallus} SCOP: d.17.1.2 PDB: 1a67_A 1cew_I 1a90_A Length = 111

 Score = 67.9 bits (165), Expect = 2e-16
 Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 24/109 (22%)

Query: 4   VGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQF--VKVVSAKQQVVSGTLYDITLE 61
           +G    V+   N++ +    +FA+ E+N+  N       V+V+SAK+Q+VSG  Y + +E
Sbjct: 3   LGAPVPVDE--NDEGLQRALQFAMAEYNRASNDKYSSRVVRVISAKRQLVSGIKYILQVE 60

Query: 62  AV--------------------EGGQKKLFEAKVWEKPWMQFKELKEFN 90
                                 E  +       V+  PW+   +L E  
Sbjct: 61  IGRTTCPKSSGDLQSCEFHDEPEMAKYTTCTFVVYSIPWLNQIKLLESK 109

>1roa_A Cystatin D; inhibitor of cysteine pepidases, protein binding; 1.80A {Homo sapiens} SCOP: d.17.1.2 PDB: 1rn7_A Length = 122

 Score = 66.8 bits (162), Expect = 5e-16
 Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 25/110 (22%)

Query: 4   VGGVREVEATANNQEIVNLARFAVDEHNKKQNSNL---QFVKVVSAKQQVVSGTLYDITL 60
            GG+   +   N++ +     FA+ E+NK  N +    + ++V++A QQ+V G  Y   +
Sbjct: 11  AGGIHATDL--NDKSVQRALDFAISEYNKVINKDEYYSRPLQVMAAYQQIVGGVNYYFNV 68

Query: 61  EAVEGGQKKLFE--------------------AKVWEKPWMQFKELKEFN 90
           +       K                        ++ E PW     +  + 
Sbjct: 69  KFGRTTCTKSQPNLDNCPFNDQPKLKEEEFCSFQINEVPWEDKISILNYK 118

>2kxg_A Aspartic protease inhibitor; sqapi, protein, hydrolase inhib; NMR {Cucurbita maxima} Length = 95

 Score = 49.1 bits (116), Expect = 2e-09
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 12/82 (14%)

Query: 15 NNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSG-----TLYDITLEAVEGGQK- 68
          N+  +  +A FA+ +H +    NL    V +   Q++ G       Y++ L A     + 
Sbjct: 15 NDPRVKEIAEFALKQHAE---QNLILAGVDAG--QIIKGIPHWDNYYNLILSAKHSPHEF 69

Query: 69 -KLFEAKVWEKPWMQFKELKEF 89
           K +   V EK      +L  F
Sbjct: 70 SKFYNVVVLEKASDNSLKLVAF 91

>1cyu_A Cystatin A, stefin A; proteinase inhibitor (cysteine); NMR {Homo sapiens} SCOP: d.17.1.2 PDB: 1cyv_A 1gd3_A 1dvc_A 1dvd_A 1n9j_A 1nb3_I* 1nb5_I* 3k9m_C 3kfq_C 3kse_D* 1gd4_A Length = 98

 Score = 36.0 bits (83), Expect = 2e-04
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 7/76 (9%)

Query: 4  VGGVREV-EATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITLEA 62
           GG+ E   AT   QEIV+  +    +  +K N     ++ V  K QVV+GT Y I    
Sbjct: 3  PGGLSEAKPATPEIQEIVDKVK---PQLEEKTNETYGKLEAVQYKTQVVAGTNYYIK--- 56

Query: 63 VEGGQKKLFEAKVWEK 78
          V  G  K    KV++ 
Sbjct: 57 VRAGDNKYLHLKVFKS 72

>2oct_A Cystatin B; stefin, amyloid, domain-swapping, hand shaking, PR isomerization, protein binding; 1.40A {Homo sapiens} PDB: 1stf_I* Length = 98

 Score = 35.6 bits (82), Expect = 3e-04
 Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 7/76 (9%)

Query: 4  VGGVREV-EATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITLEA 62
           G       ATA  Q I +  R  ++E   K N      K VS K QVV+GT Y I    
Sbjct: 3  SGAPSATQPATAETQHIADQVRSQLEE---KYNKKFPVFKAVSFKSQVVAGTNYFIK--- 56

Query: 63 VEGGQKKLFEAKVWEK 78
          V  G +     +V++ 
Sbjct: 57 VHVGDEDFVHLRVFQS 72

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	100
1eqk_A	102	Oryzacystatin-I; alpha and beta proteins, cystatin	100.0
3ima_B	91	Cysteine proteinase inhibitor; cystatin, tarocysta	100.0
3ul5_A	139	Canecystatin-1; defense, hydrolase inhibitor; 2.30	100.0
2l4v_A	135	Cystatin; protease inhibitor, hydrolase inhibitor;	100.0
2w9q_A	87	Multicystatin; protease inhibitor, thiol protease	99.97
1yvb_I	111	Cystatin; cysteine protease-inhibitor complex, hyd	99.96
2kxg_A	95	Aspartic protease inhibitor; sqapi, protein, hydro	99.96
1roa_A	122	Cystatin D; inhibitor of cysteine pepidases, prote	99.96
3l0r_A	115	Cystatin-2, OMC2; SOFT TICK, protease inhibitor, t	99.96
3gax_A	120	Cystatin-C; cysteine protease inhibitor, 3D domain	99.96
2o9u_X	97	Monellin chain B and monellin chain A; alternative	99.96
2ch9_A	131	Cystatin F; inhibitor, cysteine protease inhibitor	99.96
3mwz_A	115	Sialostatin L2; antiparallel beta-sheet, hydrolase	99.95
2oct_A	98	Cystatin B; stefin, amyloid, domain-swapping, hand	99.91
1cyu_A	98	Cystatin A, stefin A; proteinase inhibitor (cystei	99.9
2bo9_B	222	Human latexin, MUM; metallocarboxypeptidase, X-RAY	97.4
1kwi_A	101	Protegrin-3 precursor; cathelicidin motif, disulfi	95.46

>1eqk_A Oryzacystatin-I; alpha and beta proteins, cystatin-like fold, cystatin/monellin superfamily, phytocystatin family; NMR {Oryza sativa japonica group} SCOP: d.17.1.2

Probab=100.00  E-value=1.1e-35  Score=186.74  Aligned_cols=95  Identities=61%  Similarity=0.940  Sum_probs=91.2

Q ss_pred             cccceeEEcCCCCCcHHHHHHHHHHHHHhhhcCCCceeEEEEEEEEEEeccceEEEEEEEEeeCCeeEEEEEEEEEecCC
Q 034268            2 ATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITLEAVEGGQKKLFEAKVWEKPWM   81 (100)
Q Consensus         2 ~~~GG~~~~~~~~~d~~v~~~a~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~nY~i~v~~~~~~~~~~c~~~V~~~pW~   81 (100)
                      +++|||++++ +.+||+++++++||+.+||+++++.|.|.+|+++++|||||+||+|+|+++++++.+.|+++||++||+
T Consensus         7 ~~~GG~~~~~-~~~~~~v~~~a~~Av~~~n~~~n~~~~~~~Vv~a~~QVVaG~~Y~l~v~~~~~~~~~~c~~~V~~~PW~   85 (102)
T 1eqk_A            7 PVLGGVEPVG-NENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTIEVKEGDAKKLYEAKVWEKPWM   85 (102)
T ss_dssp             SCSSSSEEEC-CTTCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEEEESSSEEEEEEEEEEETTCCEEEEEEEEEBTTT
T ss_pred             CCCcccccCC-CCCCHHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEEEeccEEEEEEEEEecCCCcEEEEEEEEEeeCC
Confidence            5799999975 689999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeeEEEEecCCCCC
Q 034268           82 QFKELKEFNTVAQSHS   97 (100)
Q Consensus        82 ~~~~l~~f~~~~~~~~   97 (100)
                      ++++|++|+|.+++|+
T Consensus        86 ~~~~l~~f~c~~~~~~  101 (102)
T 1eqk_A           86 DFKELQEFKPVDASAN  101 (102)
T ss_dssp             TBCCEEEEECCCCCCC
T ss_pred             CceEEEEEEcCCCCCC
Confidence            9999999999999975

>3ima_B Cysteine proteinase inhibitor; cystatin, tarocystatin, cecpi, papain, phytocystatin, allergen, disulfide bond, hydrolase, protease; 2.03A {Colocasia esculenta} SCOP: d.17.1.0

Probab=100.00  E-value=2e-34  Score=177.97  Aligned_cols=91  Identities=54%  Similarity=0.909  Sum_probs=81.9

Q ss_pred             cccceeEEcCCCCCcHHHHHHHHHHHHHhhhcCCCceeEEEEEEEEEEeccceEEEEEEEEeeCCeeEEEEEEEEEecCC
Q 034268            2 ATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITLEAVEGGQKKLFEAKVWEKPWM   81 (100)
Q Consensus         2 ~~~GG~~~~~~~~~d~~v~~~a~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~nY~i~v~~~~~~~~~~c~~~V~~~pW~   81 (100)
                      +|+|||++++++++||+++++++||+.+||+++++.|.|.+|+++++|||||+||+|+|+++++++.+.|++.||++||+
T Consensus         1 ~~~GG~~~~~~~~~d~~v~~~a~fav~~~n~~~n~~~~~~~Vv~a~~QVVaG~nY~l~v~~~~~~~~~~y~a~V~~~pW~   80 (91)
T 3ima_B            1 ALMGGIVDVEGAQNSAEVEELARFAVDEHNKKENALLQFSRLVKAKQQVVSGIMHHLTVEVIEGGKKKVYEAKVWVQAWL   80 (91)
T ss_dssp             CCBTCEEC------CHHHHHHHHHHHHHHHHHHTCCCEEEEEEEEEEEESSSEEEEEEEEEEETTEEEEEEEEEEEEGGG
T ss_pred             CCCcccccCcCCCCCHHHHHHHHHHHHHHHHhcCCceEEEEEEEEEEEEeccEEEEEEEEEecCCceEEEEEEEEEeeCC
Confidence            47999999943489999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeeEEEEec
Q 034268           82 QFKELKEFNTV   92 (100)
Q Consensus        82 ~~~~l~~f~~~   92 (100)
                      ++++|++|+++
T Consensus        81 ~~~~l~~F~~~   91 (91)
T 3ima_B           81 NSKKLHEFSPI   91 (91)
T ss_dssp             TEEEEEEEEC-
T ss_pred             CcEEEEEEEeC
Confidence            99999999974

>3ul5_A Canecystatin-1; defense, hydrolase inhibitor; 2.30A {Saccharum officinarum} PDB: 3ul6_A*

Probab=100.00  E-value=2.1e-33  Score=184.88  Aligned_cols=95  Identities=47%  Similarity=0.818  Sum_probs=78.8

Q ss_pred             CcccceeEEc-CCCCCcHHHHHHHHHHHHHhhhcCCCceeEEEEEEEEEEeccceEEEEEEEEee-CCeeEEEEEEEEEe
Q 034268            1 MATVGGVREV-EATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITLEAVE-GGQKKLFEAKVWEK   78 (100)
Q Consensus         1 ~~~~GG~~~~-~~~~~d~~v~~~a~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~nY~i~v~~~~-~~~~~~c~~~V~~~   78 (100)
                      |.++|||+++ +++++||+++++|+||+.+||+++++.|+|.+|++|++|||||+||+|+|++.+ +++.+.|+|+||++
T Consensus        43 ~~~~GG~~~i~~~~~ndpeVqela~fAV~e~Nkksn~~l~~~kVv~a~sQVVAG~nY~L~V~a~d~~g~~~~y~a~Vwek  122 (139)
T 3ul5_A           43 VGMVGDVRDAPAGHENDLEAIELARFAVAEHNSKTNAMLEFERLVKVRHQVVAGTMHHFTVQVKEAGGGKKLYEAKVWEK  122 (139)
T ss_dssp             -------------CTTCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEEEEEEEEEEEECSSCCEEEEEEEEEEE
T ss_pred             CCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHhCCCceeEEEEEEEEEEEecCEEEEEEEEEecCCCCeEEEEEEEEEe
Confidence            4689999999 223899999999999999999999999999999999999999999999999999 88999999999999


Q ss_pred             cCCCceeeEEEEecCCC
Q 034268           79 PWMQFKELKEFNTVAQS   95 (100)
Q Consensus        79 pW~~~~~l~~f~~~~~~   95 (100)
                      ||+++++|++|+++.+|
T Consensus       123 PW~n~k~L~sF~p~~~~  139 (139)
T 3ul5_A          123 VWENFKQLQSFQPVGDA  139 (139)
T ss_dssp             TTTTEEEEEEEEECC--
T ss_pred             eCCCceEEEEEEEcCCC
Confidence            99999999999999874

>2l4v_A Cystatin; protease inhibitor, hydrolase inhibitor; NMR {Ananas comosus}

Probab=100.00  E-value=1.7e-32  Score=180.08  Aligned_cols=94  Identities=46%  Similarity=0.779  Sum_probs=89.5

Q ss_pred             cccceeEEcC-CCCCcHHHHHHHHHHHHHhhhcCCCceeEEEEEEEEEEeccceEEEEEEEEeeCCeeEEEEEEEEEecC
Q 034268            2 ATVGGVREVE-ATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITLEAVEGGQKKLFEAKVWEKPW   80 (100)
Q Consensus         2 ~~~GG~~~~~-~~~~d~~v~~~a~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~nY~i~v~~~~~~~~~~c~~~V~~~pW   80 (100)
                      +++|||++++ ++.+|++++++++||+.+||+++++.|.|.+|+++++|||+|+||+|+|+++++++.+.|+++||++||
T Consensus        41 ~~~GG~~~i~~~~~nd~evqe~a~fAv~e~N~~sn~~~~f~kVv~a~~QVVAG~nY~l~vev~~~~~~~~c~a~Vw~kPW  120 (135)
T 2l4v_A           41 PIMGGIYDAPLNNENGFDKEDLARFAVREYNNKNNALLEFVRVVKAKEQVVSGMMHYLTVEVNDAGKKKLYEAKVWEQVW  120 (135)
T ss_dssp             CCCCCSSCCCCTTTTSHHHHHHHHHHHHHHHHHTSCCCEEEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEEECSS
T ss_pred             CCCCccCcCCCCCCCCHHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEEEecCEEEEEEEEEecCCceEEEEEEEEEecC
Confidence            4789999996 458999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeeEEEEecCCC
Q 034268           81 MQFKELKEFNTVAQS   95 (100)
Q Consensus        81 ~~~~~l~~f~~~~~~   95 (100)
                      +++++|++|+|++++
T Consensus       121 ~n~~~L~~f~~~~~~  135 (135)
T 2l4v_A          121 MNFRQLQEFTYLGDA  135 (135)
T ss_dssp             SCCEEEEEEEECSCC
T ss_pred             CCceEEEEEEecCCC
Confidence            999999999999874

>2w9q_A Multicystatin; protease inhibitor, thiol protease inhibitor, hydrolase inhibitor; 2.50A {Solanum tuberosum} PDB: 2w9p_A

Probab=99.97  E-value=1e-30  Score=159.75  Aligned_cols=86  Identities=47%  Similarity=0.830  Sum_probs=82.1

Q ss_pred             eeEEcCCCCCcHHHHHHHHHHHHHhhhcCCCceeEEEEEEEEEEeccceEEEEEEEEee-CCeeEEEEEEEEEecCCCce
Q 034268            6 GVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITLEAVE-GGQKKLFEAKVWEKPWMQFK   84 (100)
Q Consensus         6 G~~~~~~~~~d~~v~~~a~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~nY~i~v~~~~-~~~~~~c~~~V~~~pW~~~~   84 (100)
                      ||+++. |++||+++++++||+.+||+++++.|++.+|+++++|||||+||+|++++++ +++...|+++||++||++++
T Consensus         1 G~~~~~-~~~d~~v~~~~~fAv~~~n~~~n~~~~~~~vv~a~~QVVaG~~Y~l~v~~~~~~~~~~~c~~~V~~~PW~~~~   79 (87)
T 2w9q_A            1 GIVNVP-NPNNTKFQELARFAIQDYNKKQNAHLEFVENLNVKEQVVAGIMYYITLAATDDAGKKKIYKAKIWVKEWEDFK   79 (87)
T ss_dssp             CCEECS-STTSHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEEEEESSSEEEEEEEEEEETTTEEEEEEEEEEEEGGGTEE
T ss_pred             CcccCC-CCCCHHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEEEeccEEEEEEEEEecCCCCeEEEEEEEEEeeCCCce
Confidence            799997 7999999999999999999999999999999999999999999999999998 68889999999999999999


Q ss_pred             eeEEEEec
Q 034268           85 ELKEFNTV   92 (100)
Q Consensus        85 ~l~~f~~~   92 (100)
                      +|++|+++
T Consensus        80 ~l~~f~~~   87 (87)
T 2w9q_A           80 KVVEFKLV   87 (87)
T ss_dssp             EEEEEEEC
T ss_pred             EEEeeccC
Confidence            99999874

>1yvb_I Cystatin; cysteine protease-inhibitor complex, hydrolase-hydrolase INH complex; 2.70A {Gallus gallus} SCOP: d.17.1.2 PDB: 1a67_A 1cew_I 1a90_A

Probab=99.96  E-value=1.5e-29  Score=160.15  Aligned_cols=88  Identities=27%  Similarity=0.411  Sum_probs=82.7

Q ss_pred             ccceeEEcCCCCCcHHHHHHHHHHHHHhhhcCCCce--eEEEEEEEEEEeccceEEEEEEEEeeC---------------
Q 034268            3 TVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNL--QFVKVVSAKQQVVSGTLYDITLEAVEG---------------   65 (100)
Q Consensus         3 ~~GG~~~~~~~~~d~~v~~~a~~Av~~~n~~~~~~~--~~~~V~~a~~QVVaG~nY~i~v~~~~~---------------   65 (100)
                      |+|||++++  .+||+++++++||+.+||+++++.|  ++.+|++|++|||+|++|+|+|+++++               
T Consensus         2 ~~Gg~~~~~--~~d~~v~~~~~~av~~~N~~s~~~~~~~l~~v~~a~~QvVaG~~y~l~v~v~~t~C~k~~~~~~~C~~~   79 (111)
T 1yvb_I            2 LLGAPVPVD--ENDEGLQRALQFAMAEYNRASNDKYSSRVVRVISAKRQLVSGIKYILQVEIGRTTCPKSSGDLQSCEFH   79 (111)
T ss_dssp             CTTCEECCC--TTCHHHHHHHHHHHHHHHHHCCCSSCEEEEEECCCEEEESSSEEEEEEEEEEEBSSCSSSSCSSCCCBC
T ss_pred             CCCCceECC--CCCHHHHHHHHHHHHHHHHhCCCcceeEEEEEEEEEEEEECCeEEEEEEEEEccccCCCCCCcccCCCC
Confidence            689999997  9999999999999999999988876  899999999999999999999999985               


Q ss_pred             -----CeeEEEEEEEEEecCCCceeeEEEEec
Q 034268           66 -----GQKKLFEAKVWEKPWMQFKELKEFNTV   92 (100)
Q Consensus        66 -----~~~~~c~~~V~~~pW~~~~~l~~f~~~   92 (100)
                           ++...|.++||.+||+++++|++|+|.
T Consensus        80 ~~~~~~~~~~C~~~V~~~pW~~~~~l~~~~C~  111 (111)
T 1yvb_I           80 DEPEMAKYTTCTFVVYSIPWLNQIKLLESKCQ  111 (111)
T ss_dssp             SSTTTSCCEEEEEEEEEEGGGTEEEEEEEEEC
T ss_pred             CCcccccccEEEEEEEecCCCCccEeeccccC
Confidence                 367899999999999999999999994

>2kxg_A Aspartic protease inhibitor; sqapi, protein, hydrolase inhib; NMR {Cucurbita maxima}

Probab=99.96  E-value=6.1e-29  Score=154.54  Aligned_cols=84  Identities=25%  Similarity=0.426  Sum_probs=79.8

Q ss_pred             cccceeEEcCCCCCcHHHHHHHHHHHHHhhhcCCCceeEEEEEEEEEEeccce-----EEEEEEEEeeC--CeeEEEEEE
Q 034268            2 ATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGT-----LYDITLEAVEG--GQKKLFEAK   74 (100)
Q Consensus         2 ~~~GG~~~~~~~~~d~~v~~~a~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~-----nY~i~v~~~~~--~~~~~c~~~   74 (100)
                      +++|||++++  .+||+++++|+||+.+||++   .++|.+|++|  |||+|+     ||+|++++.++  ++.+.|+++
T Consensus         4 ~~~Gg~~~i~--~nd~~v~e~a~fAv~e~N~~---~l~~~~Vv~a--QVVaG~~~~~~~Y~L~l~~~~~~~~~~~~y~a~   76 (95)
T 2kxg_A            4 PAIGEVIGIS--VNDPRVKEIAEFALKQHAEQ---NLILAGVDAG--QIIKGIPHWDNYYNLILSAKHSPHEFSKFYNVV   76 (95)
T ss_dssp             CSSCCCCCCC--TTCHHHHHHHHHHHHHCCTT---CCEEEEEEEE--EEECSSCSSCCEEEEEEEEESCTTSCCEEEEEE
T ss_pred             CCCCcceECC--CCCHHHHHHHHHHHHHHHhh---CcEEEEEEEE--eEecCccccCccEEEEEEEecCCCCCceEEEEE
Confidence            5789999996  99999999999999999987   6899999999  999999     99999999998  888999999


Q ss_pred             EEEecCCCceeeEEEEec
Q 034268           75 VWEKPWMQFKELKEFNTV   92 (100)
Q Consensus        75 V~~~pW~~~~~l~~f~~~   92 (100)
                      ||++||+++++|++|++.
T Consensus        77 Vw~kpW~n~~~L~sF~~~   94 (95)
T 2kxg_A           77 VLEKASDNSLKLVAFVPL   94 (95)
T ss_dssp             EEEETTTTEEEEEEEEEC
T ss_pred             EEEccCCCcEEEEEeEec
Confidence            999999999999999974

>1roa_A Cystatin D; inhibitor of cysteine pepidases, protein binding; 1.80A {Homo sapiens} SCOP: d.17.1.2 PDB: 1rn7_A

Probab=99.96  E-value=1e-28  Score=158.98  Aligned_cols=89  Identities=20%  Similarity=0.369  Sum_probs=80.9

Q ss_pred             ccceeEEcCCCCCcHHHHHHHHHHHHHhhhc-CCCce--eEEEEEEEEEEeccceEEEEEEEEeeCC-------------
Q 034268            3 TVGGVREVEATANNQEIVNLARFAVDEHNKK-QNSNL--QFVKVVSAKQQVVSGTLYDITLEAVEGG-------------   66 (100)
Q Consensus         3 ~~GG~~~~~~~~~d~~v~~~a~~Av~~~n~~-~~~~~--~~~~V~~a~~QVVaG~nY~i~v~~~~~~-------------   66 (100)
                      ++|||++++  .+||+++++++||+.+||++ +++.|  ++.+|++|++|||+|+||+|+|+++++.             
T Consensus        10 ~~Gg~~~~~--~~d~~v~~~a~~Av~~~N~~~s~~~~~~~l~~v~~a~~QVVaG~~Y~l~v~v~~t~C~k~~~~~~~C~~   87 (122)
T 1roa_A           10 LAGGIHATD--LNDKSVQRALDFAISEYNKVINKDEYYSRPLQVMAAYQQIVGGVNYYFNVKFGRTTCTKSQPNLDNCPF   87 (122)
T ss_dssp             --CCEEEEC--TTSHHHHHHHHHHHHHHHHTTCCCSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTSSCCSSCCB
T ss_pred             CCCCCeECC--CCCHHHHHHHHHHHHHHHhcccCCCceeEEEEEEEEEEEEECCeEEEEEEEEEccccCCCCCCcccCCC
Confidence            789999996  99999999999999999999 99887  4599999999999999999999998852             


Q ss_pred             -------eeEEEEEEEEEecCCCceeeEEEEecC
Q 034268           67 -------QKKLFEAKVWEKPWMQFKELKEFNTVA   93 (100)
Q Consensus        67 -------~~~~c~~~V~~~pW~~~~~l~~f~~~~   93 (100)
                             +...|.++||.+||+++++|++|+|.+
T Consensus        88 ~~~~~~~~~~~C~~~V~~~PW~~~~~l~~~~C~~  121 (122)
T 1roa_A           88 NDQPKLKEEEFCSFQINEVPWEDKISILNYKCRK  121 (122)
T ss_dssp             CCSTTCCCCEEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred             CCCcccccceEEEEEEEecccCCccEECcccccC
Confidence                   478999999999999999999999963

>3l0r_A Cystatin-2, OMC2; SOFT TICK, protease inhibitor, thiol protease INHI hydrolase inhibitor; 2.45A {Ornithodoros moubata}

Probab=99.96  E-value=1.8e-28  Score=156.90  Aligned_cols=89  Identities=24%  Similarity=0.430  Sum_probs=80.8

Q ss_pred             cccceeEEcCCCCCcHHHHHHHHHHHHHhhhcCCCce--eEEEEEEEEEEeccceEEEEEEEEee---------------
Q 034268            2 ATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNL--QFVKVVSAKQQVVSGTLYDITLEAVE---------------   64 (100)
Q Consensus         2 ~~~GG~~~~~~~~~d~~v~~~a~~Av~~~n~~~~~~~--~~~~V~~a~~QVVaG~nY~i~v~~~~---------------   64 (100)
                      +|+|||++++  ++||+++++|+||+.  |+++++.|  ++.+|++|++|||||+||+|+|++++               
T Consensus         2 ~~~GG~~~i~--~~d~~v~~~a~~Av~--N~~s~~~~~~~~~kV~~a~~QVVaG~~Y~i~v~v~~t~C~K~~~~~~~~~C   77 (115)
T 3l0r_A            2 SIPGGWTRQD--PTEARFLELAHFATS--SQTEGREFYDTVVTVKEVETQVVAGMNYKLTIEISPSVCKIGEVQYSAEQC   77 (115)
T ss_dssp             -CCCSCEEEC--TTCHHHHHHHHHHHT--TCCTTCSEEEEEEEEEEEEEEESSSEEEEEEEEEEEEEEEBTTBCCCTTTC
T ss_pred             CCcccceeCC--CCCHHHHHHHHHHHh--ccccCCCcceEEEEEEEEEEEEEeeEEEEEEEEEecccccccccccccccC
Confidence            4789999997  799999999999999  88888875  78999999999999999999999975               


Q ss_pred             ----CCeeEEEEEEEEEecCCCceeeEEEEecCC
Q 034268           65 ----GGQKKLFEAKVWEKPWMQFKELKEFNTVAQ   94 (100)
Q Consensus        65 ----~~~~~~c~~~V~~~pW~~~~~l~~f~~~~~   94 (100)
                          +++...|.++||.+||+++++|++|.|.+-
T Consensus        78 ~~~~~~~~~~C~~~V~~~PW~~~~~l~~~~~~~~  111 (115)
T 3l0r_A           78 VPKDAQQKSTCVAVIYHVPWQNQKSVTSYRCEHH  111 (115)
T ss_dssp             CBSCTTSCEEEEEEEEEEGGGTEEEEEEEEECC-
T ss_pred             cccCCCceeEEEEEEEEecCCCeeEEEEEEcccc
Confidence                257889999999999999999999999864

>3gax_A Cystatin-C; cysteine protease inhibitor, 3D domain swapping, protein AGG amyloid, protein engineering, twinning; 1.70A {Homo sapiens} SCOP: d.17.1.2 PDB: 1g96_A 1tij_A 3qrd_A 3ps8_A 3nx0_A 3sva_A 3s67_A 1r4c_A

Probab=99.96  E-value=2.7e-28  Score=156.77  Aligned_cols=90  Identities=24%  Similarity=0.373  Sum_probs=80.3

Q ss_pred             cccceeEEcCCCCCcHHHHHHHHHHHHHhhhcCCCc--eeEEEEEEEEEEeccceEEEEEEEEeeC--------------
Q 034268            2 ATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSN--LQFVKVVSAKQQVVSGTLYDITLEAVEG--------------   65 (100)
Q Consensus         2 ~~~GG~~~~~~~~~d~~v~~~a~~Av~~~n~~~~~~--~~~~~V~~a~~QVVaG~nY~i~v~~~~~--------------   65 (100)
                      +++|||++++  .+||+++++++||+.+||+++++.  |++.+|++|++|||+|++|+|+|+++++              
T Consensus         8 ~~~Gg~~~~~--~~d~~v~~~a~~av~~~N~~sn~~~~~~~~~v~~a~~QvVaG~~Y~l~v~v~~t~C~K~~~~~~~C~~   85 (120)
T 3gax_A            8 RLVGGPMDAS--VEEEGVRRALDFAVGEYNKASNDMYHSRACQVVRARKQIVAGVNYFLDVELCRTTCTKTQPNLDNCPF   85 (120)
T ss_dssp             ----CCEEEC--TTSHHHHHHHHHHHHHHHHHCCCSEEEEEEEEEEEEEEESSSEEEEEEEEEEEEEEESCC--CCCCCB
T ss_pred             ccCCCCEeCC--CCCHHHHHHHHHHHHHHHhccCCcceeeEEEEEEEEEEEecCeEEEEEEEEEeeeccCCCCCcccCCC
Confidence            4689999997  999999999999999999999887  6889999999999999999999999872              


Q ss_pred             ------CeeEEEEEEEEEecCCCceeeEEEEecC
Q 034268           66 ------GQKKLFEAKVWEKPWMQFKELKEFNTVA   93 (100)
Q Consensus        66 ------~~~~~c~~~V~~~pW~~~~~l~~f~~~~   93 (100)
                            ++...|.++||.+||+++++|++++|..
T Consensus        86 ~~~~~~~~~~~C~~~V~~~PW~~~~~l~~~~C~~  119 (120)
T 3gax_A           86 HDQPHLKRKAFCSFQIYAVPWQGTMTLSKSTCQD  119 (120)
T ss_dssp             CSSHHHHCCEEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred             cCCccccCceEEEEEEEecCCCCeEEeccceecC
Confidence                  3578999999999999999999999963

>2o9u_X Monellin chain B and monellin chain A; alternative conformations, 3-10 polyproline II helix, plant protein; 1.15A {Dioscoreophyllum cumminsii} SCOP: d.17.1.1 PDB: 3pxm_A 1m9g_A 3pyj_A 1fa3_A 1iv7_A 3q2p_A 1iv9_A 1mnl_A 1mol_A 1fuw_A 4mon_B 3mon_B 1krl_B 4mon_A 1krl_A 3mon_A 2q33_B* 2q33_A*

Probab=99.96  E-value=2.9e-29  Score=155.71  Aligned_cols=85  Identities=28%  Similarity=0.367  Sum_probs=77.4

Q ss_pred             cceeEEcCCCCCcHHHHHHHHHHHHHhhhcC-CCceeEEEEEEE-----------EEEeccceEEEEEEEEeeCCeeEEE
Q 034268            4 VGGVREVEATANNQEIVNLARFAVDEHNKKQ-NSNLQFVKVVSA-----------KQQVVSGTLYDITLEAVEGGQKKLF   71 (100)
Q Consensus         4 ~GG~~~~~~~~~d~~v~~~a~~Av~~~n~~~-~~~~~~~~V~~a-----------~~QVVaG~nY~i~v~~~~~~~~~~c   71 (100)
                      .|||++++  + ||+++++|+||+++||++. ++.++|.+|+++           ++| |+|+||+|+|++.++    .|
T Consensus         1 ~Ggw~~id--v-~~~iqela~FAV~e~nk~~~~~~L~f~~Vv~~~~~~~~~~~~~~~Q-VaG~nY~Ltlea~d~----~y   72 (97)
T 2o9u_X            1 MGEWEIID--I-GPFTQNLGKFAVDEENKIGQYGRLTFNKVIRPCMKKTIYENEGFRE-IKGYEYQLYVYASDK----LF   72 (97)
T ss_dssp             -CCCEEEC--C-SHHHHHHHHHHHHHHHHHCTTCSCCEEEEEEEEEEEEEECSSSSCS-EEEEEEEEEEEETTE----EC
T ss_pred             CCCceECC--C-CHHHHHHHHHHHHHHhccccCCCcEEEEEEEcccccccccchhhee-eccEEEEEEEEEeCC----ce
Confidence            49999995  7 9999999999999999986 788999999999           999 999999999999887    99


Q ss_pred             EEEEEEecCCCceeeEEEEecCCCC
Q 034268           72 EAKVWEKPWMQFKELKEFNTVAQSH   96 (100)
Q Consensus        72 ~~~V~~~pW~~~~~l~~f~~~~~~~   96 (100)
                      +|.||++||+++++|++|+|.-+.|
T Consensus        73 eA~V~ekpw~n~k~L~sF~~~~~~~   97 (97)
T 2o9u_X           73 RADISEDYKTRGRKLLRFNGPVPPP   97 (97)
T ss_dssp             -CEEEEETTTCCEEEEECCCCCCCC
T ss_pred             EEEEEEecCCCcEEeeEccCCCCCC
Confidence            9999999999999999999765443

>2ch9_A Cystatin F; inhibitor, cysteine protease inhibitor, glycoprotein; HET: NAG FUL; 2.10A {Homo sapiens}

Probab=99.96  E-value=7.1e-28  Score=157.19  Aligned_cols=91  Identities=22%  Similarity=0.367  Sum_probs=82.6

Q ss_pred             cccceeEEcCCCCCcHHHHHHHHHHHHHhhhcCCCce--eEEEEEEEEEEeccceEEEEEEEEeeC--------------
Q 034268            2 ATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNL--QFVKVVSAKQQVVSGTLYDITLEAVEG--------------   65 (100)
Q Consensus         2 ~~~GG~~~~~~~~~d~~v~~~a~~Av~~~n~~~~~~~--~~~~V~~a~~QVVaG~nY~i~v~~~~~--------------   65 (100)
                      +++|||++++  .+||++++++++|+.+||+++++.|  ++.+|++|++|||+|++|+|+|+++++              
T Consensus        15 ~~~Gg~~~~~--~~d~ev~e~a~~Av~~~N~~sn~~~~~~l~~V~~a~~QVVaG~~Y~l~v~v~~t~C~K~~~~~~~~C~   92 (131)
T 2ch9_A           15 VKPGFPKTIK--TNDPGVLQAARYSVEKFNNCTNDMFLFKESRITRALVQIVKGLKYMLEVEIGRTTCKKNQHLRLDDCD   92 (131)
T ss_dssp             SCCCCCEECC--TTCHHHHHHHHHHHHHHHHHSCCSEEEEEEEEEEEEEEESSSEEEEEEEEEEEEEEETTSCCCGGGCC
T ss_pred             cCCCCCeeCC--CCCHHHHHHHHHHHHHHHHhCCCCcceEEEEEEEeeeEecCCeEEEEEEEEEcccccCCCCCccccCC
Confidence            5799999997  8999999999999999999988876  679999999999999999999999863              


Q ss_pred             ----C---eeEEEEEEEEEecCCCceeeEEEEecCC
Q 034268           66 ----G---QKKLFEAKVWEKPWMQFKELKEFNTVAQ   94 (100)
Q Consensus        66 ----~---~~~~c~~~V~~~pW~~~~~l~~f~~~~~   94 (100)
                          +   +...|.++||.+||+++.+|++|.|-+-
T Consensus        93 ~~~~~~~~~~~~C~~~V~~~PW~~~~~l~~f~~~~~  128 (131)
T 2ch9_A           93 FQTNHTLKQTLSCYSEVWVVPWLQHFEVPVLRCHHH  128 (131)
T ss_dssp             BCCSTTTCCEEEEEEEEEEEGGGTEEEEEEEEEECC
T ss_pred             cccCcccccccEEEEEEEEecCCCeeEEEEEecccc
Confidence                1   2358999999999999999999999754

>3mwz_A Sialostatin L2; antiparallel beta-sheet, hydrolase inhibitor; HET: MSE; 1.52A {Ixodes scapularis} PDB: 3lh4_A 3li7_A

Probab=99.95  E-value=2.5e-27  Score=151.22  Aligned_cols=90  Identities=24%  Similarity=0.402  Sum_probs=81.4

Q ss_pred             cccceeEEcCCCCCcHHHHHHHHHHHHHhhhcCC-Cce--eEEEEEEEEEEeccceEEEEEEEEee--------------
Q 034268            2 ATVGGVREVEATANNQEIVNLARFAVDEHNKKQN-SNL--QFVKVVSAKQQVVSGTLYDITLEAVE--------------   64 (100)
Q Consensus         2 ~~~GG~~~~~~~~~d~~v~~~a~~Av~~~n~~~~-~~~--~~~~V~~a~~QVVaG~nY~i~v~~~~--------------   64 (100)
                      .++|||++++ +.+||+++++++||+.+||++++ +.|  ++.+|++|++|||+|+||+|+|++++              
T Consensus         4 ~~~Gg~~~~~-~~~~~~v~~~~~~av~~~N~~sn~~~~~~~~~~V~~a~~QvVaG~~Y~l~v~v~~t~C~K~~~~~~~~C   82 (115)
T 3mwz_A            4 ALRGGYRERS-NQDDPEYLEMAHYATSTWSAQQPGKTHFDTVVEVMKVETQTVAGTNYRLTLKVAESTCELTSTYNKDTC   82 (115)
T ss_dssp             CCSSCCEEEC-TTSCTHHHHHHHHHHHHHHHTSTTCCEEEEEEEEEEEEEEESSSEEEEEEEEEEEEEEETTSCCCTTTC
T ss_pred             ccCCcceECC-CCCCHHHHHHHHHHHHHHHhhcCCcccceeeeeeeEEEeeccCCEEEEEEEEEEeccccCCCcCCcccC
Confidence            5799999998 23999999999999999999987 655  67999999999999999999999964              


Q ss_pred             ----CCeeEEEEEEEEEecCCCceeeEEEEecC
Q 034268           65 ----GGQKKLFEAKVWEKPWMQFKELKEFNTVA   93 (100)
Q Consensus        65 ----~~~~~~c~~~V~~~pW~~~~~l~~f~~~~   93 (100)
                          +++...|.++||.+| +++++|++|+|..
T Consensus        83 ~~~~~~~~~~C~~~V~~~P-~~~~~l~~~~C~~  114 (115)
T 3mwz_A           83 QANANAAQRTCTTVIYRNM-QGEKSINSFECAA  114 (115)
T ss_dssp             CCCTTSCEEEEEEEEEECT-TSCEEEEEEEECC
T ss_pred             CCCCCCCeeEEEEEEEECC-CCEEEEccccccC
Confidence                367899999999999 9999999999964

>2oct_A Cystatin B; stefin, amyloid, domain-swapping, hand shaking, PR isomerization, protein binding; 1.40A {Homo sapiens} PDB: 1stf_I*

Probab=99.91  E-value=3.5e-24  Score=133.66  Aligned_cols=85  Identities=24%  Similarity=0.305  Sum_probs=78.6

Q ss_pred             cccceeEEcCCCCCcHHHHHHHHHHHHHhhhcCCCceeEEEEEEEEEEeccceEEEEEEEEeeCCeeEEEEEEEEEe-c-
Q 034268            2 ATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITLEAVEGGQKKLFEAKVWEK-P-   79 (100)
Q Consensus         2 ~~~GG~~~~~~~~~d~~v~~~a~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~nY~i~v~~~~~~~~~~c~~~V~~~-p-   79 (100)
                      ||+|||++++  .+||++++++++|+.++|++.+..|.+.+++++++|||||+||+|++++++++   .+++.||.. | 
T Consensus         1 mm~GG~~~~~--~~~~evq~i~~~a~~~~n~~~~~~~~~~~vv~~~tQVVAG~NY~ikv~v~~~~---~~h~~vy~~lp~   75 (98)
T 2oct_A            1 MMSGAPSATQ--PATAETQHIADQVRSQLEEKYNKKFPVFKAVSFKSQVVAGTNYFIKVHVGDED---FVHLRVFQSLPH   75 (98)
T ss_dssp             -CCSSCCCCE--ECCHHHHHHHHHHHHHHHHHHTSCCSCCEEEEEEEEEEEEEEEEEEEECSTTC---EEEEEEEEESST
T ss_pred             CCcccCcCCC--CCCHHHHHHHHHHHHHHHhhcCCccceeEEEEEEEEEeCCEEEEEEEEECCCc---EEEEEEEecCCC
Confidence            3699999997  79999999999999999999999999999999999999999999999999874   789999997 4 


Q ss_pred             CCCceeeEEEEe
Q 034268           80 WMQFKELKEFNT   91 (100)
Q Consensus        80 W~~~~~l~~f~~   91 (100)
                      |.+..+|++|++
T Consensus        76 ~~~~~~l~~~q~   87 (98)
T 2oct_A           76 ENKSLTLSNYQT   87 (98)
T ss_dssp             TCCCEEEEEEEE
T ss_pred             CCCceEEEEEec
Confidence            788999999987

>1cyu_A Cystatin A, stefin A; proteinase inhibitor (cysteine); NMR {Homo sapiens} SCOP: d.17.1.2 PDB: 1cyv_A 1gd3_A 1dvc_A 1dvd_A 1n9j_A 1nb3_I* 1nb5_I* 3k9m_C 3kfq_C 3kse_D* 1gd4_A

Probab=99.90  E-value=1.4e-24  Score=135.21  Aligned_cols=85  Identities=24%  Similarity=0.279  Sum_probs=78.7

Q ss_pred             cccceeEEcCCCCCcHHHHHHHHHHHHHhhhcCCCceeEEEEEEEEEEeccceEEEEEEEEeeCCeeEEEEEEEEEec--
Q 034268            2 ATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITLEAVEGGQKKLFEAKVWEKP--   79 (100)
Q Consensus         2 ~~~GG~~~~~~~~~d~~v~~~a~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~nY~i~v~~~~~~~~~~c~~~V~~~p--   79 (100)
                      ||+|||++++  .+||+++++++||+.++|+++++.|++.+|++|++|||||+||+|+++++++.   ..++.||...  
T Consensus         1 ~~~GG~~~~~--~~d~ev~~~a~~av~~~n~~~n~~~~~~~vv~a~~QVVaG~nY~l~v~~~~~~---c~~~~V~~~l~~   75 (98)
T 1cyu_A            1 MIPGGLSEAK--PATPEIQEIVDKVKPQLEEKTNETYGKLEAVQYKTQVVAGTNYYIKVRAGDNK---YLHLKVFKSLPG   75 (98)
T ss_dssp             CCCSSCSSEE--ESCTTHHHHHHHTCTTTTTSSCCSSSCEEEEEEEEECSSSCEEEEEEEECSSC---BCEEEEECCCSS
T ss_pred             CCCcccccCC--CCCHHHHHHHHHHHHHHHhhcCCCcceEEEEEEEEEEecceEEEEEEEEcCCc---EEEEEEecCCCC
Confidence            3699999997  89999999999999999999999999999999999999999999999999974   6789999874  


Q ss_pred             CCCceeeEEEEe
Q 034268           80 WMQFKELKEFNT   91 (100)
Q Consensus        80 W~~~~~l~~f~~   91 (100)
                      |.+.++|.+|+.
T Consensus        76 ~~~~~~l~~~q~   87 (98)
T 1cyu_A           76 QNEDLVLTGYQV   87 (98)
T ss_dssp             SCCCCEEEEEEC
T ss_pred             CCCCeEEEEEec
Confidence            788999999986

>2bo9_B Human latexin, MUM; metallocarboxypeptidase, X-RAY endogenous protein inhibitor, metalloprotease carboxypeptidase, hydrolase; HET: NAG; 1.6A {Homo sapiens} SCOP: d.17.1.5 d.17.1.5 PDB: 1wnh_A

Probab=97.40  E-value=0.0079  Score=41.66  Aligned_cols=82  Identities=18%  Similarity=0.105  Sum_probs=64.4

Q ss_pred             CCcHHHHHHHHHHHHHhhhcCCCce---eEEEEEEEEEEecc--ceEEEEEEEEee---CCeeEEEEEEEEEec-CCCce
Q 034268           14 ANNQEIVNLARFAVDEHNKKQNSNL---QFVKVVSAKQQVVS--GTLYDITLEAVE---GGQKKLFEAKVWEKP-WMQFK   84 (100)
Q Consensus        14 ~~d~~v~~~a~~Av~~~n~~~~~~~---~~~~V~~a~~QVVa--G~nY~i~v~~~~---~~~~~~c~~~V~~~p-W~~~~   84 (100)
                      ++-=..+++|+.|+.-+|-..++.+   .+.+|.+|+..+++  |-+|.|+|.+.+   ++....|.|+|+-.+ -.+..
T Consensus         5 psh~~a~rAA~vA~hy~N~~~gSP~~l~~L~~V~~a~a~~ip~~G~Ky~l~Fs~e~~~~~~~~~~CsA~Vlf~~~~qk~~   84 (222)
T 2bo9_B            5 PTNYPASRAALVAQNYINYQQGTPHRVFEVQKVKQASMEDIPGRGHKYRLKFAVEEIIQKQVKVNCTAEVLYPSTGQETA   84 (222)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHCBTTBCEEEEEEEEEEEEEETTTEEEEEEEEEEEETTTCCCEEEEEEEEEEECTTCCCC
T ss_pred             CcchHHHHHHHHHHHHhhcccCCCceeeehhhhhhhhhhhccCCCcEEEEEEEeeeeecCCceeEEEEEEEEccCCCCCC
Confidence            4444577899999999999988754   56889999999986  579999999998   467889999999864 33456


Q ss_pred             eeEEEEecCCC
Q 034268           85 ELKEFNTVAQS   95 (100)
Q Consensus        85 ~l~~f~~~~~~   95 (100)
                      --..|.|.+-.
T Consensus        85 P~Vn~tc~~~~   95 (222)
T 2bo9_B           85 PEVNFTFEGET   95 (222)
T ss_dssp             CEEEEEESSCC
T ss_pred             CceEEEEeccc
Confidence            67778887543

>1kwi_A Protegrin-3 precursor; cathelicidin motif, disulfide, MAD, selenocystine, antimicrobial protein; 2.19A {Sus scrofa} SCOP: d.17.1.3 PDB: 1lxe_A 1n5h_A 1n5p_A 1pfp_A

Probab=95.46  E-value=0.11  Score=31.92  Aligned_cols=73  Identities=15%  Similarity=0.123  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHhhhcCCCceeEEEEEEEEEEec----cceEEEEEEEEee------------------CCeeEEEEEE
Q 034268           17 QEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVV----SGTLYDITLEAVE------------------GGQKKLFEAK   74 (100)
Q Consensus        17 ~~v~~~a~~Av~~~n~~~~~~~~~~~V~~a~~QVV----aG~nY~i~v~~~~------------------~~~~~~c~~~   74 (100)
                      -.|++++..||+.||+++... .+.+++.+.-+-.    .|+.+.+.|.+.+                  +|-.+.|.-+
T Consensus         3 lsY~EAv~~Av~~~N~~S~~~-nlFRLl~~~p~p~~~~d~~~~~~v~FtIkETvC~~~~~~~p~~CdFke~G~vk~C~Gt   81 (101)
T 1kwi_A            3 LSYREAVLRAVDRLNEQSSEA-NLYRLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGT   81 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSS-EEEEEEEEC---------CCCEEEEEEEEEEEEESSCCSCGGGSCBCTTCCEEEEEEE
T ss_pred             cCHHHHHHHHHHHHhcCCCcc-ceeeeecccCCCccCCCCCCcceeEEEEeeeecCCCCCCCcccCCccCCCeeeeceEE
Confidence            358999999999999997653 3334444443332    3567888888875                  3677789998


Q ss_pred             EEEecCCCceeeEEEEecC
Q 034268           75 VWEKPWMQFKELKEFNTVA   93 (100)
Q Consensus        75 V~~~pW~~~~~l~~f~~~~   93 (100)
                      |...+..   ....+.|-+
T Consensus        82 v~~~~~~---~~~~i~C~~   97 (101)
T 1kwi_A           82 VTLDQIK---DPLDITCNE   97 (101)
T ss_dssp             ECCC-------CCEEEEEE
T ss_pred             EEecCCC---ceEEeeccC
Confidence            8765433   334444543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	100
d1eqka_	102	d.17.1.2 (A:) Phytocystatin {Japanese rice (Oryza	3e-30
d1roaa_	111	d.17.1.2 (A:) Cystatin D {Human (Homo sapiens) [Ta	7e-20
d1r4ca_	110	d.17.1.2 (A:) Cystatin C {Human (Homo sapiens) [Ta	4e-17
d1cewi_	108	d.17.1.2 (I:) Cystatin {Chicken (Gallus gallus) [T	6e-17
d1kwia_	98	d.17.1.3 (A:) Cathelicidin motif of protegrin-3 {P	2e-04

>d1eqka_ d.17.1.2 (A:) Phytocystatin {Japanese rice (Oryza sativa), subsp. japonica, oryzacystatin-I [TaxId: 4530]} Length = 102

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Phytocystatin
species: Japanese rice (Oryza sativa), subsp. japonica, oryzacystatin-I [TaxId: 4530]

 Score =  101 bits (253), Expect = 3e-30
 Identities = 58/95 (61%), Positives = 70/95 (73%), Gaps = 1/95 (1%)

Query: 4   VGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITLEAV 63
           +GGV  V    N+  +V+LARFAV EHNKK NS L+F K+VS KQQVV+GTLY  T+E  
Sbjct: 9   LGGVEPVG-NENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTIEVK 67

Query: 64  EGGQKKLFEAKVWEKPWMQFKELKEFNTVAQSHSS 98
           EG  KKL+EAKVWEKPWM FKEL+EF  V  S ++
Sbjct: 68  EGDAKKLYEAKVWEKPWMDFKELQEFKPVDASANA 102

>d1roaa_ d.17.1.2 (A:) Cystatin D {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.4 bits (185), Expect = 7e-20
 Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 25/109 (22%)

Query: 5   GGVREVEATANNQEIVNLARFAVDEHNKKQNSN---LQFVKVVSAKQQVVSGTLYDITLE 61
           GG+   +   N++ +     FA+ E+NK  N +    + ++V++A QQ+V G  Y   ++
Sbjct: 1   GGIHATDL--NDKSVQRALDFAISEYNKVINKDEYYSRPLQVMAAYQQIVGGVNYYFNVK 58

Query: 62  AVEGGQKKLFE--------------------AKVWEKPWMQFKELKEFN 90
                  K                        ++ E PW     +  + 
Sbjct: 59  FGRTTCTKSQPNLDNCPFNDQPKLKEEEFCSFQINEVPWEDKISILNYK 107

>d1r4ca_ d.17.1.2 (A:) Cystatin C {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin C
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.2 bits (166), Expect = 4e-17
 Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 24/108 (22%)

Query: 5   GGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQF--VKVVSAKQQVVSGTLYDITLEA 62
           GG  +   +   + +     FAV E+NK  N       ++VV A++Q+V+G  Y + +E 
Sbjct: 1   GGPMDA--SVEEEGVRRALDFAVGEYNKASNDMYHSRALQVVRARKQIVAGVNYFLDVEL 58

Query: 63  VEGGQKKLFE--------------------AKVWEKPWMQFKELKEFN 90
                 K                        +++  PW     L +  
Sbjct: 59  GRTTCTKTQPNLDNCPFHDQPHLKRKAFCSFQIYAVPWQGTMTLSKST 106

>d1cewi_ d.17.1.2 (I:) Cystatin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 108

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 67.8 bits (165), Expect = 6e-17
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 22/103 (21%)

Query: 10  VEATANNQEIVNLARFAVDEHNKKQNSNLQF--VKVVSAKQQVVSGTLYDITLEAVEGGQ 67
           V    N++ +    +FA+ E+N+  N       V+V+SAK+Q+VSG  Y + +E      
Sbjct: 4   VPVDENDEGLQRALQFAMAEYNRASNDKYSSRVVRVISAKRQLVSGIKYILQVEIGRTTC 63

Query: 68  KKLFE--------------------AKVWEKPWMQFKELKEFN 90
            K                         V+  PW+   +L E  
Sbjct: 64  PKSSGDLQSCEFHDEPEMAKYTTCTFVVYSIPWLNQIKLLESK 106

>d1kwia_ d.17.1.3 (A:) Cathelicidin motif of protegrin-3 {Pig (Sus scrofa) [TaxId: 9823]} Length = 98

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cathelicidin motif
domain: Cathelicidin motif of protegrin-3
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 35.0 bits (80), Expect = 2e-04
 Identities = 10/79 (12%), Positives = 21/79 (26%), Gaps = 21/79 (26%)

Query: 23 ARFAVDEHNKKQNSNLQF--VKVVSAKQQVV-SGTLYDITLEAVE--------------- 64
             AVD  N++ +    +  +++    +     GT   ++    E               
Sbjct: 8  VLRAVDRLNEQSSEANLYRLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCD 67

Query: 65 ---GGQKKLFEAKVWEKPW 80
              G+ K     V     
Sbjct: 68 FKENGRVKQCVGTVTLDQI 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	100
d1eqka_	102	Phytocystatin {Japanese rice (Oryza sativa), subsp	100.0
d1roaa_	111	Cystatin D {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1cewi_	108	Cystatin {Chicken (Gallus gallus) [TaxId: 9031]}	99.95
d1r4ca_	110	Cystatin C {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1stfi_	98	Cystatin B (stefin B) {Human (Homo sapiens) [TaxId	99.79
d1nb5i_	98	Cystatin A (stefin A) {Human (Homo sapiens) [TaxId	99.76
d1kwia_	98	Cathelicidin motif of protegrin-3 {Pig (Sus scrofa	99.59
d2bo9b1	98	Latexin {Human (Homo sapiens) [TaxId: 9606]}	97.93
d2o9ux1	96	Monellin, B & A chains together {Serendipity berry	87.27

>d1eqka_ d.17.1.2 (A:) Phytocystatin {Japanese rice (Oryza sativa), subsp. japonica, oryzacystatin-I [TaxId: 4530]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Phytocystatin
species: Japanese rice (Oryza sativa), subsp. japonica, oryzacystatin-I [TaxId: 4530]

Probab=100.00  E-value=1.6e-35  Score=184.84  Aligned_cols=95  Identities=61%  Similarity=0.940  Sum_probs=91.9

Q ss_pred             cccceeEEcCCCCCcHHHHHHHHHHHHHhhhcCCCceeEEEEEEEEEEeccceEEEEEEEEeeCCeeEEEEEEEEEecCC
Q 034268            2 ATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITLEAVEGGQKKLFEAKVWEKPWM   81 (100)
Q Consensus         2 ~~~GG~~~~~~~~~d~~v~~~a~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~nY~i~v~~~~~~~~~~c~~~V~~~pW~   81 (100)
                      .++|||++++ |.+||+++++++||+.+||+++++.|+|++|++|++|||+|+||+|+|++.+++..+.|+++||++||+
T Consensus         7 ~l~GG~~~i~-d~nd~~v~e~a~~Av~~~N~~~~~~~~~vkV~~a~~QVVaG~~Y~i~v~~~~~~~~k~c~~~Vw~~pW~   85 (102)
T d1eqka_           7 PVLGGVEPVG-NENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTIEVKEGDAKKLYEAKVWEKPWM   85 (102)
T ss_dssp             SCSSSSEEEC-CTTCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEEEESSSEEEEEEEEEEETTCCEEEEEEEEEBTTT
T ss_pred             cccCCcccCC-CCCCHHHHHHHHHHHHHHhhcCCCceEEEEEEEEeeeeccceeEEEEEEEccCCccEEEEEEEEEeeCC
Confidence            5899999986 699999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeeEEEEecCCCCC
Q 034268           82 QFKELKEFNTVAQSHS   97 (100)
Q Consensus        82 ~~~~l~~f~~~~~~~~   97 (100)
                      ++++|++|+|.++++|
T Consensus        86 ~~~~l~~f~~~~~~~~  101 (102)
T d1eqka_          86 DFKELQEFKPVDASAN  101 (102)
T ss_dssp             TBCCEEEEECCCCCCC
T ss_pred             CccEEEEEEEcCCCCC
Confidence            9999999999999887

>d1roaa_ d.17.1.2 (A:) Cystatin D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=8.6e-28  Score=151.20  Aligned_cols=87  Identities=22%  Similarity=0.384  Sum_probs=79.0

Q ss_pred             ceeEEcCCCCCcHHHHHHHHHHHHHhhhcCC-Cce--eEEEEEEEEEEeccceEEEEEEEEeeC----------------
Q 034268            5 GGVREVEATANNQEIVNLARFAVDEHNKKQN-SNL--QFVKVVSAKQQVVSGTLYDITLEAVEG----------------   65 (100)
Q Consensus         5 GG~~~~~~~~~d~~v~~~a~~Av~~~n~~~~-~~~--~~~~V~~a~~QVVaG~nY~i~v~~~~~----------------   65 (100)
                      |||++++  .+||+++++++||+.+||++++ +.|  .+.+|++|++|||+|++|+|+++++++                
T Consensus         1 GG~~~~~--~~d~~v~~~~~~Av~~~N~~sn~~~~~~~l~~V~~a~~QVVaG~~Y~l~~~i~~T~C~K~~~~~~~c~~~~   78 (111)
T d1roaa_           1 GGIHATD--LNDKSVQRALDFAISEYNKVINKDEYYSRPLQVMAAYQQIVGGVNYYFNVKFGRTTCTKSQPNLDNCPFND   78 (111)
T ss_dssp             CCEEEEC--TTSHHHHHHHHHHHHHHHHTTCCCSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTSSCCSSCCBCC
T ss_pred             CCCccCC--CCCHHHHHHHHHHHHHHHHhcCCccceeEEEEEEEEEEEEecCcEEEEEEEEEeccccccccccccccccc
Confidence            9999997  9999999999999999999876 444  679999999999999999999999752                


Q ss_pred             ----CeeEEEEEEEEEecCCCceeeEEEEecC
Q 034268           66 ----GQKKLFEAKVWEKPWMQFKELKEFNTVA   93 (100)
Q Consensus        66 ----~~~~~c~~~V~~~pW~~~~~l~~f~~~~   93 (100)
                          ++...|+++||.+||+++.+|++++|..
T Consensus        79 ~~~~~~~~~C~~~V~~~PW~~~~~v~~~~C~~  110 (111)
T d1roaa_          79 QPKLKEEEFCSFQINEVPWEDKISILNYKCRK  110 (111)
T ss_dssp             STTCCCCEEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred             CccccceEEEEEEEEEcccCCceEEeeccccc
Confidence                4578999999999999999999999963

>d1cewi_ d.17.1.2 (I:) Cystatin {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.95  E-value=2.8e-27  Score=147.98  Aligned_cols=86  Identities=28%  Similarity=0.404  Sum_probs=79.5

Q ss_pred             ceeEEcCCCCCcHHHHHHHHHHHHHhhhcCCCcee--EEEEEEEEEEeccceEEEEEEEEee------------------
Q 034268            5 GGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQ--FVKVVSAKQQVVSGTLYDITLEAVE------------------   64 (100)
Q Consensus         5 GG~~~~~~~~~d~~v~~~a~~Av~~~n~~~~~~~~--~~~V~~a~~QVVaG~nY~i~v~~~~------------------   64 (100)
                      ||+.+++  ++||+++++++||+.+||+++++.|.  +.+|++|++|||+|++|+|++++++                  
T Consensus         1 Gg~~~~~--~~d~~v~~~~~~Av~~~N~~s~~~~~~~~~~V~~a~~QVVaG~~Y~l~~~i~~T~C~k~~~~~~~c~~~~~   78 (108)
T d1cewi_           1 GAPVPVD--ENDEGLQRALQFAMAEYNRASNDKYSSRVVRVISAKRQLVSGIKYILQVEIGRTTCPKSSGDLQSCEFHDE   78 (108)
T ss_dssp             CCCEECC--TTCHHHHHHHHHHTHHHHTTSCCSEEEEEEEEEEEEEEESSSEEEEEEEEEEEEEEETTCTTHHHHHHHHC
T ss_pred             CCCccCC--CCCHHHHHHHHHHHHHHHhcCCCcceEEEEEEEEEEEEeecCcEEEEEEEEEecccccccccccccccccC
Confidence            8999997  99999999999999999999988764  6899999999999999999999975                  


Q ss_pred             --CCeeEEEEEEEEEecCCCceeeEEEEec
Q 034268           65 --GGQKKLFEAKVWEKPWMQFKELKEFNTV   92 (100)
Q Consensus        65 --~~~~~~c~~~V~~~pW~~~~~l~~f~~~   92 (100)
                        .++...|+++||.+||+++.+|++++|.
T Consensus        79 ~~~~~~~~C~~~V~~~pW~~~~~v~~~~Cq  108 (108)
T d1cewi_          79 PEMAKYTTCTFVVYSIPWLNQIKLLESKCQ  108 (108)
T ss_dssp             SSCSCEEEEEEEEEEETTTTEEEEEEEEEC
T ss_pred             cccCceEEEEEEEEEeccCCceEeeecccC
Confidence              1457899999999999999999999994

>d1r4ca_ d.17.1.2 (A:) Cystatin C {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.3e-27  Score=148.77  Aligned_cols=87  Identities=24%  Similarity=0.381  Sum_probs=80.2

Q ss_pred             ceeEEcCCCCCcHHHHHHHHHHHHHhhhcCCCcee--EEEEEEEEEEeccceEEEEEEEEeeC-----------------
Q 034268            5 GGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQ--FVKVVSAKQQVVSGTLYDITLEAVEG-----------------   65 (100)
Q Consensus         5 GG~~~~~~~~~d~~v~~~a~~Av~~~n~~~~~~~~--~~~V~~a~~QVVaG~nY~i~v~~~~~-----------------   65 (100)
                      |||.+++  .+||+++++++||+.+||+++++.|.  +.+|++|++|||+|++|+|+|+++++                 
T Consensus         1 Gg~~~~~--~~d~~v~~~~~~Av~~~N~~s~~~~~~~~~kV~~a~~QvVaG~~Y~l~~~i~~T~C~k~~~~~~~c~~~~~   78 (110)
T d1r4ca_           1 GGPMDAS--VEEEGVRRALDFAVGEYNKASNDMYHSRALQVVRARKQIVAGVNYFLDVELGRTTCTKTQPNLDNCPFHDQ   78 (110)
T ss_dssp             CCCEECC--TTSHHHHHHHHHHHHHHHHHCCCSEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEETTSSCGGGCCBCCS
T ss_pred             CCCccCC--CCCHHHHHHHHHHHHHHHhhCCccceeEEEEEEEEEEEeccCCEEEEEEEEeecccccCccccccCccccC
Confidence            9999997  99999999999999999999888764  69999999999999999999999751                 


Q ss_pred             ---CeeEEEEEEEEEecCCCceeeEEEEecC
Q 034268           66 ---GQKKLFEAKVWEKPWMQFKELKEFNTVA   93 (100)
Q Consensus        66 ---~~~~~c~~~V~~~pW~~~~~l~~f~~~~   93 (100)
                         ++...|+++||.+||+++.+|++++|..
T Consensus        79 ~~~~~~~~C~~~V~~~PW~~~~~l~~~~C~~  109 (110)
T d1r4ca_          79 PHLKRKAFCSFQIYAVPWQGTMTLSKSTCQD  109 (110)
T ss_dssp             TTTCCEEEEEEEEEEEGGGTEEEEEEEEEEE
T ss_pred             ccccceEEEEEEEEEeccCCceEEeeeeccC
Confidence               4577999999999999999999999974

>d1stfi_ d.17.1.2 (I:) Cystatin B (stefin B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin B (stefin B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.1e-19  Score=111.28  Aligned_cols=86  Identities=23%  Similarity=0.303  Sum_probs=78.2

Q ss_pred             cccceeEEcCCCCCcHHHHHHHHHHHHHhhhcCCCceeEEEEEEEEEEeccceEEEEEEEEeeCCeeEEEEEEEEEe-cC
Q 034268            2 ATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITLEAVEGGQKKLFEAKVWEK-PW   80 (100)
Q Consensus         2 ~~~GG~~~~~~~~~d~~v~~~a~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~nY~i~v~~~~~~~~~~c~~~V~~~-pW   80 (100)
                      ||+|||++..  +.+|++|+++.....+.+++.|.+|...++++.++|||||+||+|++.++++   ..+|+.||.. |.
T Consensus         1 mm~GG~s~~~--~at~Eiq~i~d~Vk~~~e~k~~~k~~~f~av~yktQvVaG~NYfIKV~vg~~---~~~HlrV~~~Lp~   75 (98)
T d1stfi_           1 MMSGAPSATQ--PATAETQHIADQVRSQLEEKYNKKFPVFKAVSFKSQVVAGTNYFIKVHVGDE---DFVHLRVFQSLPH   75 (98)
T ss_dssp             CCBSCCCCCE--ECCHHHHHHHHTTHHHHHHHHTCCCSCCEEEEEEEEESSEEEEEEEEECSSS---CEEEEEEEEECGG
T ss_pred             CcCCCCCCCC--CCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEEEEEEcceeEEEEEEeCCC---cEEEEEEeccCCC
Confidence            5689999987  8999999999999999999999999888999999999999999999999998   4899999997 77


Q ss_pred             CCc-eeeEEEEec
Q 034268           81 MQF-KELKEFNTV   92 (100)
Q Consensus        81 ~~~-~~l~~f~~~   92 (100)
                      .+. .+|.++++-
T Consensus        76 ~~~~l~L~~~q~~   88 (98)
T d1stfi_          76 ENKPLTLSNYQTN   88 (98)
T ss_dssp             GCCCCEEEEEEEE
T ss_pred             CCCceEEEEEecC
Confidence            664 799998875

>d1nb5i_ d.17.1.2 (I:) Cystatin A (stefin A) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin A (stefin A)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.9e-18  Score=105.55  Aligned_cols=86  Identities=26%  Similarity=0.314  Sum_probs=77.9

Q ss_pred             cccceeEEcCCCCCcHHHHHHHHHHHHHhhhcCCCceeEEEEEEEEEEeccceEEEEEEEEeeCCeeEEEEEEEEEe-cC
Q 034268            2 ATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFVKVVSAKQQVVSGTLYDITLEAVEGGQKKLFEAKVWEK-PW   80 (100)
Q Consensus         2 ~~~GG~~~~~~~~~d~~v~~~a~~Av~~~n~~~~~~~~~~~V~~a~~QVVaG~nY~i~v~~~~~~~~~~c~~~V~~~-pW   80 (100)
                      ||+|||++..  +.+|++|+++.....+.+++.|..|.-.+.++.++|||||+||+|++.++++   ..+|+.||.. |.
T Consensus         1 mm~GG~s~~~--~at~Eiq~I~d~Vk~~le~k~g~~~~~F~av~yktQvVAGtNYfIKV~vG~~---~~vHlrVf~~Lp~   75 (98)
T d1nb5i_           1 MIPGGLSEAK--PATPEIQEIVDKVKPQLEEKTNETYGKLEAVQYKTQVVAGTNYYIKVRAGDN---KYMHLKVFKSLPG   75 (98)
T ss_dssp             CCTTSCCCCE--ECCHHHHHHHHHHHHHHHHHHCCCCSCCEEEEEEEEESSEEEEEEEEECSSS---CEEEEEEEEECTT
T ss_pred             CccCCCCCCC--CCCHHHHHHHHHHHHHHHHhcCCCcceEEEEEEEEEEEcceeEEEEEEeCCC---cEEEEEEeccCCC
Confidence            5799999887  8999999999999999999999999989999999999999999999999998   4899999997 77


Q ss_pred             CC-ceeeEEEEec
Q 034268           81 MQ-FKELKEFNTV   92 (100)
Q Consensus        81 ~~-~~~l~~f~~~   92 (100)
                      .+ ..+|.++++-
T Consensus        76 ~~~~l~L~~~q~~   88 (98)
T d1nb5i_          76 QNEDLVLTGYQVD   88 (98)
T ss_dssp             SCCCCEEEEEEEE
T ss_pred             CCCccEEEEEEcC
Confidence            65 4799998875

>d1kwia_ d.17.1.3 (A:) Cathelicidin motif of protegrin-3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cathelicidin motif
domain: Cathelicidin motif of protegrin-3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.59  E-value=2.1e-15  Score=91.95  Aligned_cols=69  Identities=14%  Similarity=0.119  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHhhhcCCCc--eeEEEEEEEEEEec-cceEEEEEEEEee------------------CCeeEEEEEEEE
Q 034268           18 EIVNLARFAVDEHNKKQNSN--LQFVKVVSAKQQVV-SGTLYDITLEAVE------------------GGQKKLFEAKVW   76 (100)
Q Consensus        18 ~v~~~a~~Av~~~n~~~~~~--~~~~~V~~a~~QVV-aG~nY~i~v~~~~------------------~~~~~~c~~~V~   76 (100)
                      .+++++.+|+.+||+++++.  |++.+|++++.|+| +|++|+|+|.+++                  ++....|++.||
T Consensus         3 sy~eav~~Al~~~N~~s~~~~~f~l~~v~~a~~q~v~~g~~y~l~f~i~eT~C~k~~~~~~~~C~~~~~~~~~~C~~~V~   82 (98)
T d1kwia_           3 SYREAVLRAVDRLNEQSSEANLYRLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVT   82 (98)
T ss_dssp             HHHHHHHHHHHHHHHHCCSSEEEEEEEEC---------CCCEEEEEEEEEEEEESSCCSCGGGSCBCTTCCEEEEEEEEC
T ss_pred             CHHHHHHHHHHHHHcCCCCcccEEEEEEeecceeeecCCcEEEEEEEEEEeecCCcCCCChHHCccccCCcceEEEEEEE
Confidence            58999999999999998876  46799999999999 8999999999986                  267788999999


Q ss_pred             EecCCCceee
Q 034268           77 EKPWMQFKEL   86 (100)
Q Consensus        77 ~~pW~~~~~l   86 (100)
                      ..||.+...|
T Consensus        83 ~~pw~~~~~v   92 (98)
T d1kwia_          83 LDQIKDPLDI   92 (98)
T ss_dssp             CC----CCEE
T ss_pred             EcCcCCEEEE
Confidence            9999987765

>d2bo9b1 d.17.1.5 (B:1-98) Latexin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Latexin-like
domain: Latexin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=0.00042  Score=40.98  Aligned_cols=81  Identities=19%  Similarity=0.102  Sum_probs=61.8

Q ss_pred             CCcHHHHHHHHHHHHHhhhcCCCce---eEEEEEEEEEEecc--ceEEEEEEEEee---CCeeEEEEEEEEEecC-CCce
Q 034268           14 ANNQEIVNLARFAVDEHNKKQNSNL---QFVKVVSAKQQVVS--GTLYDITLEAVE---GGQKKLFEAKVWEKPW-MQFK   84 (100)
Q Consensus        14 ~~d~~v~~~a~~Av~~~n~~~~~~~---~~~~V~~a~~QVVa--G~nY~i~v~~~~---~~~~~~c~~~V~~~pW-~~~~   84 (100)
                      ++.=...++|+-|+.-+|-..++++   .+.+|.+|..++++  |-+|.|+|.+.+   +.....|.|+|+-..- .+..
T Consensus         5 psh~pA~rAA~vA~hy~N~~~GSP~rl~~L~~V~~a~~e~ip~~G~Ky~L~Fs~e~~~~~e~~~~CsA~Vlfp~~~qk~a   84 (98)
T d2bo9b1           5 PTNYPASRAALVAQNYINYQQGTPHRVFEVQKVKQASMEDIPGRGHKYRLKFAVEEIIQKQVKVNCTAEVLYPSTGQETA   84 (98)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHCBTTBCEEEEEEEEEEEEEETTTEEEEEEEEEEEETTTCCCEEEEEEEEEEECTTCCCC
T ss_pred             CcchHHHHHHHHHHHHhhcccCCCceeeehhHHHhhhhhhccccCcEEEEEEEhhhcccccccceeEEEEEEcCCCCCCC
Confidence            5555577899999999999988754   56899999999996  579999999988   3456689999998432 2335


Q ss_pred             eeEEEEecCC
Q 034268           85 ELKEFNTVAQ   94 (100)
Q Consensus        85 ~l~~f~~~~~   94 (100)
                      --..|.|.+-
T Consensus        85 P~Vn~tceg~   94 (98)
T d2bo9b1          85 PEVNFTFEGE   94 (98)
T ss_dssp             CEEEEEESSC
T ss_pred             CeEEEEEEEe
Confidence            5666777653

>d2o9ux1 d.17.1.1 (X:1001-1096) Monellin, B & A chains together {Serendipity berry (Dioscoreophyllum cumminsii) [TaxId: 3457]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Monellin
domain: Monellin, B & A chains together
species: Serendipity berry (Dioscoreophyllum cumminsii) [TaxId: 3457]

Probab=87.27  E-value=1.4  Score=24.19  Aligned_cols=79  Identities=30%  Similarity=0.399  Sum_probs=52.4

Q ss_pred             ceeEEcCCCCCcHHHHHHHHHHHHHhhhcC-CCceeEEEEEEEEEE--e--------ccceEEEEEEEEeeCCeeEEEEE
Q 034268            5 GGVREVEATANNQEIVNLARFAVDEHNKKQ-NSNLQFVKVVSAKQQ--V--------VSGTLYDITLEAVEGGQKKLFEA   73 (100)
Q Consensus         5 GG~~~~~~~~~d~~v~~~a~~Av~~~n~~~-~~~~~~~~V~~a~~Q--V--------VaG~nY~i~v~~~~~~~~~~c~~   73 (100)
                      |.|.-++   --|.-+.+.+||+++-|+-. -.+++|.+|++--..  +        ..|..|.+-+-+.+.    .+.+
T Consensus         1 geweiid---igpftqnlgkfavdeenkigqygrltfnkvirpcmkktiyenegfreikgyeyqlyvyasdk----lfra   73 (96)
T d2o9ux1           1 GEWEIID---IGPFTQNLGKFAVDEENKIGQYGRLTFNKVIRPCMKKTIYENEGFREIKGYEYQLYVYASDK----LFRA   73 (96)
T ss_dssp             CCCEEEC---CSHHHHHHHHHHHHHHHHHCTTCSCCEEEEEEEEEEEEEECSSSSCSEEEEEEEEEEEETTE----EC-C
T ss_pred             CCceEEE---ecchhhhhcceeecccccccccceeehhHHhHHHhhhhhhcccCceeccCcEEEEEEEecch----hhhh
Confidence            5677774   57899999999999998863 346889888875322  2        345667776666553    5666


Q ss_pred             EEEEecCCCceeeEEEE
Q 034268           74 KVWEKPWMQFKELKEFN   90 (100)
Q Consensus        74 ~V~~~pW~~~~~l~~f~   90 (100)
                      .+-+---...++|+.|.
T Consensus        74 disedyktrgrkllrfn   90 (96)
T d2o9ux1          74 DISEDYKTRGRKLLRFN   90 (96)
T ss_dssp             EEEEETTTCCEEEEECC
T ss_pred             hhhhhhhhccceeEecc
Confidence            66554323446777765