Query 034269
Match_columns 100
No_of_seqs 103 out of 202
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 11:37:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034269.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034269hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02704 GASA: Gibberellin reg 100.0 1.1E-37 2.4E-42 202.1 5.2 60 41-100 1-60 (60)
2 PF07172 GRP: Glycine rich pro 89.9 0.58 1.3E-05 32.3 3.9 10 1-11 1-11 (95)
3 PF15128 T_cell_tran_alt: T-ce 88.5 0.56 1.2E-05 33.0 3.1 21 2-22 26-46 (92)
4 PF09257 BCMA-Tall_bind: BCMA, 63.3 6.5 0.00014 23.8 1.9 21 45-65 16-36 (39)
5 PF03058 Sar8_2: Sar8.2 family 46.2 30 0.00066 24.5 3.3 22 6-27 8-30 (93)
6 PF15240 Pro-rich: Proline-ric 43.4 23 0.00049 27.5 2.5 17 7-23 2-18 (179)
7 PF10690 Myticin-prepro: Mytic 37.8 17 0.00036 26.0 0.9 14 40-53 23-37 (98)
8 PF11912 DUF3430: Protein of u 37.1 29 0.00062 25.2 2.1 17 5-21 2-18 (212)
9 PLN02708 Probable pectinestera 32.6 1.1E+02 0.0023 27.2 5.2 21 42-62 43-63 (553)
10 PF07699 GCC2_GCC3: GCC2 and G 32.1 57 0.0012 19.0 2.5 28 69-96 10-41 (48)
11 PF10731 Anophelin: Thrombin i 31.5 96 0.0021 20.7 3.7 21 1-23 1-21 (65)
12 PF07127 Nodulin_late: Late no 30.5 52 0.0011 20.0 2.2 19 1-19 1-20 (54)
13 PF12454 Ecm33: GPI-anchored c 30.4 65 0.0014 19.4 2.6 13 1-13 1-13 (40)
14 PF10868 DUF2667: Protein of u 25.3 37 0.00081 23.7 1.0 19 72-90 63-81 (90)
15 COG4537 ComGC Competence prote 24.8 72 0.0016 23.1 2.4 13 7-19 20-32 (107)
16 PF02532 PsbI: Photosystem II 24.8 1.3E+02 0.0029 17.9 3.2 20 1-20 1-20 (36)
17 PF01826 TIL: Trypsin Inhibito 23.8 3.3 7.1E-05 24.7 -4.0 39 40-82 8-46 (55)
18 PF06873 SerH: Cell surface im 23.8 46 0.001 28.6 1.5 20 4-23 3-22 (403)
19 PLN03161 Probable xyloglucan e 23.3 70 0.0015 26.3 2.4 18 1-18 1-18 (291)
20 PF15144 DUF4576: Domain of un 23.2 1.8E+02 0.0039 20.4 4.0 25 1-25 1-25 (88)
21 PHA02849 putative transmembran 23.0 1.1E+02 0.0024 21.2 2.9 17 6-22 23-39 (82)
22 PF15330 SIT: SHP2-interacting 21.9 1.1E+02 0.0023 21.6 2.8 12 81-92 43-54 (107)
23 PRK14750 kdpF potassium-transp 21.7 1.4E+02 0.0031 17.0 2.8 17 7-23 10-26 (29)
24 PF09889 DUF2116: Uncharacteri 20.1 1.3E+02 0.0028 19.3 2.7 15 6-20 40-54 (59)
25 PF07359 LEAP-2: Liver-express 20.0 35 0.00075 23.4 0.0 18 7-24 6-23 (77)
No 1
>PF02704 GASA: Gibberellin regulated protein; InterPro: IPR003854 This is the GASA gibberellin regulated cysteine rich protein family. The expression of these proteins is up-regulated by the plant hormone gibberellin, most of these proteins have some role in plant development. There are 12 cysteine residues conserved within the alignment giving the potential for these proteins to posses 6 disulphide bonds.
Probab=100.00 E-value=1.1e-37 Score=202.13 Aligned_cols=60 Identities=67% Similarity=1.515 Sum_probs=59.4
Q ss_pred CchHHhhHHhhcCCCCchHHHHhhHhcCcccccCCCCCCCCCCCCccccccccCCCCCCC
Q 034269 41 DCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 100 (100)
Q Consensus 41 ~C~~~C~~RC~~~~~~~~C~~~C~~CC~~C~CVP~Gt~Gn~~~CpCY~~~~t~~g~~KCP 100 (100)
||+++|++||++++++++|||+||+||++|+|||||||||+|+||||+||+||+|+||||
T Consensus 1 ~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~GT~gn~~~CpCY~~m~t~~g~pKCP 60 (60)
T PF02704_consen 1 DCGGACSVRCSKASRKKRCMRACGTCCAKCKCVPPGTYGNKEECPCYRDMKTHGGKPKCP 60 (60)
T ss_pred CcchHHHHHHhccCCchHHHHHHHHHhccCcccCCCCCCCCccCCChhhhhccCCCCCCc
Confidence 799999999999999999999999999999999999999999999999999999999999
No 2
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=89.85 E-value=0.58 Score=32.33 Aligned_cols=10 Identities=50% Similarity=0.587 Sum_probs=5.3
Q ss_pred ChhHH-HHHHHH
Q 034269 1 MAISK-ALIASV 11 (100)
Q Consensus 1 MA~~k-~l~~~l 11 (100)
|| || +||+.|
T Consensus 1 Ma-SK~~llL~l 11 (95)
T PF07172_consen 1 MA-SKAFLLLGL 11 (95)
T ss_pred Cc-hhHHHHHHH
Confidence 89 66 344433
No 3
>PF15128 T_cell_tran_alt: T-cell leukemia translocation-altered
Probab=88.51 E-value=0.56 Score=33.01 Aligned_cols=21 Identities=38% Similarity=0.469 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 034269 2 AISKALIASVLLSLVVFHLVE 22 (100)
Q Consensus 2 A~~k~l~~~ll~sll~l~lv~ 22 (100)
+++|+|+.+|++||+.++++=
T Consensus 26 ~ifkllL~WlvlsLl~I~lAW 46 (92)
T PF15128_consen 26 QIFKLLLGWLVLSLLAIHLAW 46 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999764
No 4
>PF09257 BCMA-Tall_bind: BCMA, TALL-1 binding; InterPro: IPR015337 Cytokines can be grouped into a family on the basis of sequence, functional and structural similarities [, , ]. Tumor necrosis factor (TNF) (also known as TNF-alpha or cachectin) is a monocyte-derived cytotoxin that has been implicated in tumour regression, septic shock and cachexia [, ]. The protein is synthesised as a prohormone with an unusually long and atypical signal sequence, which is absent from the mature secreted cytokine []. A short hydrophobic stretch of amino acids serves to anchor the prohormone in lipid bilayers []. Both the mature protein and a partially-processed form of the hormone are secreted after cleavage of the propeptide []. There are a number of different families of TNF, but all these cytokines seem to form homotrimeric (or heterotrimeric in the case of LT-alpha/beta) complexes that are recognised by their specific receptors. Members of this entry, which are predominantly found in the tumour necrosis factor receptor superfamily member 17, BCMA, are required for binding to tumour necrosis factor ligand TALL-1 []. ; PDB: 2KN1_A 1OQD_R 1XU2_T.
Probab=63.31 E-value=6.5 Score=23.80 Aligned_cols=21 Identities=33% Similarity=0.893 Sum_probs=16.6
Q ss_pred HhhHHhhcCCCCchHHHHhhH
Q 034269 45 ACQARCRLSSRPNLCHRACGT 65 (100)
Q Consensus 45 ~C~~RC~~~~~~~~C~~~C~~ 65 (100)
-|--|||+..-+-.|.+||+.
T Consensus 16 PChLRCsn~tPP~~Cq~YCna 36 (39)
T PF09257_consen 16 PCHLRCSNNTPPLPCQRYCNA 36 (39)
T ss_dssp EHHHHHTSSS--TTTHHHHHH
T ss_pred cceeecCCCCCCccchhhccc
Confidence 388999998888899999985
No 5
>PF03058 Sar8_2: Sar8.2 family; InterPro: IPR004297 Members of this family are found in Solanaceae spp. plants, a taxonomic group (family) that includes pepper and tobacco plant species. Synthesis of these proteins is induced by Tobacco mosaic virus and salicylic acid []; indeed they are thought to be involved in the development of systemic acquired resistance (SAR) after an initial hypersensitive response to microbial infection [, ]. SAR is characterised by long-lasting resistance to infection by a wide range of pathogens, extending to plant tissues distant from the initial infection site [].
Probab=46.21 E-value=30 Score=24.45 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=10.2
Q ss_pred HHHHHHHHHHH-HHHHHhhhhcc
Q 034269 6 ALIASVLLSLV-VFHLVEAEHTI 27 (100)
Q Consensus 6 ~l~~~ll~sll-~l~lv~a~~~~ 27 (100)
+|.++|.|.|+ ..+.|.|-+|+
T Consensus 8 fl~lSLailLmIISSqv~AREms 30 (93)
T PF03058_consen 8 FLCLSLAILLMIISSQVDAREMS 30 (93)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHh
Confidence 45555533333 33455554443
No 6
>PF15240 Pro-rich: Proline-rich
Probab=43.36 E-value=23 Score=27.49 Aligned_cols=17 Identities=12% Similarity=0.313 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHhh
Q 034269 7 LIASVLLSLVVFHLVEA 23 (100)
Q Consensus 7 l~~~ll~sll~l~lv~a 23 (100)
||++|.++||+|..++.
T Consensus 2 LlVLLSvALLALSSAQ~ 18 (179)
T PF15240_consen 2 LLVLLSVALLALSSAQS 18 (179)
T ss_pred hhHHHHHHHHHhhhccc
Confidence 45555556666665553
No 7
>PF10690 Myticin-prepro: Myticin pre-proprotein from the mussel; InterPro: IPR019631 Myticin is a cysteine-rich peptide produced in three isoforms, A, B and C, by Mytilus galloprovincialis (Mediterranean mussel). Isoforms A and B show antibacterial activity against Gram-positive bacteria, while isoform B is additionally active against the fungus Fusarium oxysporum and a Gram-negative bacterium, Escherichia coli (streptomycin resistant strain D31) []. Myticin-prepro is the precursor peptide. The mature molecule, named myticin, consists of 40 residues, with four intramolecular disulphide bridges and a cysteine array in the primary structure different from that of previously characterised cysteine-rich antimicrobial peptides. The first 20 amino acids are a putative signal peptide, and the antimicrobial peptide sequence is a 36-residue C-terminal extension. Such a structure suggests that myticins are synthesised as prepro-proteins that are then processed by various proteolytic events before storage in the haemocytes as the active peptide. Myticin precursors are expressed mainly in the haemocytes. ; PDB: 2EEM_A.
Probab=37.83 E-value=17 Score=25.97 Aligned_cols=14 Identities=29% Similarity=0.762 Sum_probs=8.8
Q ss_pred CCchHH-hhHHhhcC
Q 034269 40 IDCGGA-CQARCRLS 53 (100)
Q Consensus 40 ~~C~~~-C~~RC~~~ 53 (100)
+.|.+. |+.+|..+
T Consensus 23 ~~CtS~yC~~fCgsa 37 (98)
T PF10690_consen 23 ISCTSYYCKKFCGSA 37 (98)
T ss_dssp --HHHH-HHHHHHHT
T ss_pred cccchhHHHHhcCCC
Confidence 468887 88877754
No 8
>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.
Probab=37.11 E-value=29 Score=25.23 Aligned_cols=17 Identities=35% Similarity=0.596 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034269 5 KALIASVLLSLVVFHLV 21 (100)
Q Consensus 5 k~l~~~ll~sll~l~lv 21 (100)
|+|+.+|||.++++.++
T Consensus 2 Kll~~lilli~~~~~~~ 18 (212)
T PF11912_consen 2 KLLISLILLILLIINFS 18 (212)
T ss_pred cHHHHHHHHHHHHHhhh
Confidence 45555555555555543
No 9
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=32.55 E-value=1.1e+02 Score=27.19 Aligned_cols=21 Identities=14% Similarity=0.306 Sum_probs=16.1
Q ss_pred chHHhhHHhhcCCCCchHHHH
Q 034269 42 CGGACQARCRLSSRPNLCHRA 62 (100)
Q Consensus 42 C~~~C~~RC~~~~~~~~C~~~ 62 (100)
=+..=..-|+.+.+++.|...
T Consensus 43 ~~~~I~s~C~~T~YP~lC~sS 63 (553)
T PLN02708 43 TPPQILLACNATRFPDTCVSS 63 (553)
T ss_pred ccHHHHHhccCCCCcHHHHHH
Confidence 344556779999999999875
No 10
>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. This entry represents various ephrin type A and B receptors, which have tyrosine kinase activity.
Probab=32.07 E-value=57 Score=19.01 Aligned_cols=28 Identities=32% Similarity=0.659 Sum_probs=20.3
Q ss_pred cccccCCCCCCCC---CCC-CccccccccCCC
Q 034269 69 RCNCVPPGTAGNT---EVC-PCYANMTTHHGR 96 (100)
Q Consensus 69 ~C~CVP~Gt~Gn~---~~C-pCY~~~~t~~g~ 96 (100)
.|.=.|.|||-+. .+| +|-++..|..-+
T Consensus 10 ~C~~Cp~GtYq~~~g~~~C~~Cp~g~~T~~~G 41 (48)
T PF07699_consen 10 KCQPCPKGTYQDEEGQTSCTPCPPGSTTSSEG 41 (48)
T ss_pred ccCCCCCCccCCccCCccCccCcCCCccCCcC
Confidence 4555689999854 579 899998875543
No 11
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=31.49 E-value=96 Score=20.66 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=10.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhh
Q 034269 1 MAISKALIASVLLSLVVFHLVEA 23 (100)
Q Consensus 1 MA~~k~l~~~ll~sll~l~lv~a 23 (100)
||.-.++|++|-+.|++ ++|+
T Consensus 1 MA~Kl~vialLC~aLva--~vQ~ 21 (65)
T PF10731_consen 1 MASKLIVIALLCVALVA--IVQS 21 (65)
T ss_pred CcchhhHHHHHHHHHHH--HHhc
Confidence 66543444455555544 5554
No 12
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=30.51 E-value=52 Score=19.98 Aligned_cols=19 Identities=21% Similarity=0.196 Sum_probs=10.1
Q ss_pred Chh-HHHHHHHHHHHHHHHH
Q 034269 1 MAI-SKALIASVLLSLVVFH 19 (100)
Q Consensus 1 MA~-~k~l~~~ll~sll~l~ 19 (100)
||- .|++-+.+++.+|++.
T Consensus 1 Ma~ilKFvY~mIiflslflv 20 (54)
T PF07127_consen 1 MAKILKFVYAMIIFLSLFLV 20 (54)
T ss_pred CccchhhHHHHHHHHHHHHh
Confidence 554 6666665555444443
No 13
>PF12454 Ecm33: GPI-anchored cell wall organization protein
Probab=30.39 E-value=65 Score=19.45 Aligned_cols=13 Identities=38% Similarity=0.475 Sum_probs=9.9
Q ss_pred ChhHHHHHHHHHH
Q 034269 1 MAISKALIASVLL 13 (100)
Q Consensus 1 MA~~k~l~~~ll~ 13 (100)
||++|.++..|.+
T Consensus 1 Ma~~Ky~lpAlaa 13 (40)
T PF12454_consen 1 MAFSKYLLPALAA 13 (40)
T ss_pred CchHHHHHHHHHH
Confidence 8999988877543
No 14
>PF10868 DUF2667: Protein of unknown function (DUF2667); InterPro: IPR022618 This family of proteins with unknown function appears to be restricted to Arabidopsis thaliana.
Probab=25.29 E-value=37 Score=23.72 Aligned_cols=19 Identities=37% Similarity=0.815 Sum_probs=10.9
Q ss_pred ccCCCCCCCCCCCCccccc
Q 034269 72 CVPPGTAGNTEVCPCYANM 90 (100)
Q Consensus 72 CVP~Gt~Gn~~~CpCY~~~ 90 (100)
|+|-|-..-...|-|..+-
T Consensus 63 C~~~~~~~~~~~C~Cc~~~ 81 (90)
T PF10868_consen 63 CVPVGPPPGDGVCYCCYYV 81 (90)
T ss_pred eccCCCCCCCcEEEEeccC
Confidence 5665544446777665553
No 15
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=24.78 E-value=72 Score=23.10 Aligned_cols=13 Identities=23% Similarity=0.567 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHH
Q 034269 7 LIASVLLSLVVFH 19 (100)
Q Consensus 7 l~~~ll~sll~l~ 19 (100)
|+++++||+|+|.
T Consensus 20 LiVLlIISiLlLl 32 (107)
T COG4537 20 LIVLLIISILLLL 32 (107)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555443
No 16
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=24.76 E-value=1.3e+02 Score=17.90 Aligned_cols=20 Identities=20% Similarity=0.359 Sum_probs=10.7
Q ss_pred ChhHHHHHHHHHHHHHHHHH
Q 034269 1 MAISKALIASVLLSLVVFHL 20 (100)
Q Consensus 1 MA~~k~l~~~ll~sll~l~l 20 (100)
|.+.|+++-.++++++.|.+
T Consensus 1 M~~LK~~Vy~vV~ffv~LFi 20 (36)
T PF02532_consen 1 MLTLKIFVYTVVIFFVSLFI 20 (36)
T ss_dssp -HHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeehhhHHHHHHHHh
Confidence 67778766555444444433
No 17
>PF01826 TIL: Trypsin Inhibitor like cysteine rich domain; InterPro: IPR002919 This domain is found in proteinase inhibitors as well as in many extracellular proteins. The domain typically contains ten cysteine residues that form five disulphide bonds. The cysteine residues that form the disulphide bonds are 1-7, 2-6, 3-5, 4-10 and 8-9. This inhibitor domain belongs to MEROPS inhibitor family I8 (clan IA). Proteins containing this domain inhibit peptidases belonging to families S1 (IPR001254 from INTERPRO), S8 (IPR000209 from INTERPRO), and M4 (IPR001570 from INTERPRO) [] and are restricted to the chordata, nematoda, arthropoda and echinodermata. Examples of proteins containing this domain are: chymotrypsin/elastase inhibitor from Ascaris suum (pig roundworm) Acp62F protein from Drosophila melanogaster Bombina trypsin inhibitor from Bombina maxima (large-webbed bell toad) Bombyx subtilisin inhibitor from Bombyx mori (silk moth) von Willebrand factor ; PDB: 2P3F_N 1HX2_A 1CCV_A 1EAI_D 2H9E_C 1COU_A 1ATE_A 1ATB_A 1ATD_A 1ATA_A ....
Probab=23.84 E-value=3.3 Score=24.71 Aligned_cols=39 Identities=33% Similarity=0.959 Sum_probs=26.2
Q ss_pred CCchHHhhHHhhcCCCCchHHHHhhHhcCcccccCCCCCCCCC
Q 034269 40 IDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTE 82 (100)
Q Consensus 40 ~~C~~~C~~RC~~~~~~~~C~~~C~~CC~~C~CVP~Gt~Gn~~ 82 (100)
.+|++.|...|+.......|... |=.-|.| |+|++-|.+
T Consensus 8 ~~C~~~C~~tC~~~~~~~~C~~~---C~~gC~C-~~G~v~~~~ 46 (55)
T PF01826_consen 8 SECGSPCPRTCDNPNNPEPCSEP---CVEGCFC-PPGYVRNDN 46 (55)
T ss_dssp ESSETSTTCBSSCTTTSSSCSSS----ESEEEE-TTTEEEETT
T ss_pred CcccCCcCCcCCCCCCCcCcCCC---CCccCCC-CCCeeEcCC
Confidence 37888999999987777766633 3344667 567765444
No 18
>PF06873 SerH: Cell surface immobilisation antigen SerH; InterPro: IPR009670 This entry consists of several cell surface immobilisation antigen SerH proteins which seem to be specific to Tetrahymena thermophila. The SerH locus of T. thermophila is one of several paralogous loci with genes encoding variants of the major cell surface protein known as the immobilisation antigen (i-ag) [].
Probab=23.80 E-value=46 Score=28.65 Aligned_cols=20 Identities=25% Similarity=0.429 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 034269 4 SKALIASVLLSLVVFHLVEA 23 (100)
Q Consensus 4 ~k~l~~~ll~sll~l~lv~a 23 (100)
.|+||+.|+|++|++.++.+
T Consensus 3 ~k~lii~Lii~~llv~~i~a 22 (403)
T PF06873_consen 3 NKILIICLIISSLLVSQISA 22 (403)
T ss_pred chhhHHHHHHHHHHHheecc
Confidence 36777777766666665533
No 19
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=23.28 E-value=70 Score=26.25 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=10.8
Q ss_pred ChhHHHHHHHHHHHHHHH
Q 034269 1 MAISKALIASVLLSLVVF 18 (100)
Q Consensus 1 MA~~k~l~~~ll~sll~l 18 (100)
||..+.|++.+++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (291)
T PLN03161 1 MASLKTLLVALFAALAAF 18 (291)
T ss_pred ChhHHHHHHHHHHHHHhc
Confidence 788776666555544443
No 20
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=23.21 E-value=1.8e+02 Score=20.36 Aligned_cols=25 Identities=32% Similarity=0.299 Sum_probs=14.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhhh
Q 034269 1 MAISKALIASVLLSLVVFHLVEAEH 25 (100)
Q Consensus 1 MA~~k~l~~~ll~sll~l~lv~a~~ 25 (100)
||.|.+=+.++|-.|+++.--+|++
T Consensus 1 MAvSvLrltivlGLlvLIltC~Ad~ 25 (88)
T PF15144_consen 1 MAVSVLRLTIVLGLLVLILTCHADD 25 (88)
T ss_pred CchHHHHHHHHHHHHHHHhhhccCC
Confidence 8887654444444444555555553
No 21
>PHA02849 putative transmembrane protein; Provisional
Probab=23.05 E-value=1.1e+02 Score=21.21 Aligned_cols=17 Identities=12% Similarity=0.397 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 034269 6 ALIASVLLSLVVFHLVE 22 (100)
Q Consensus 6 ~l~~~ll~sll~l~lv~ 22 (100)
++++..++.+++++++.
T Consensus 23 ~v~vI~i~~flLlyLvk 39 (82)
T PHA02849 23 FVLVISFLAFMLLYLIK 39 (82)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444445556666665
No 22
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=21.86 E-value=1.1e+02 Score=21.56 Aligned_cols=12 Identities=50% Similarity=0.905 Sum_probs=6.1
Q ss_pred CCCCCccccccc
Q 034269 81 TEVCPCYANMTT 92 (100)
Q Consensus 81 ~~~CpCY~~~~t 92 (100)
.|+=|||.|+..
T Consensus 43 ~E~~p~YgNL~~ 54 (107)
T PF15330_consen 43 TEDDPCYGNLEL 54 (107)
T ss_pred CCCCcccccccc
Confidence 344455555544
No 23
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=21.67 E-value=1.4e+02 Score=17.01 Aligned_cols=17 Identities=35% Similarity=0.626 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHhh
Q 034269 7 LIASVLLSLVVFHLVEA 23 (100)
Q Consensus 7 l~~~ll~sll~l~lv~a 23 (100)
+++.+|+..|+..+.+|
T Consensus 10 llv~lLl~YLvYAL~na 26 (29)
T PRK14750 10 LLVLLLLGYLVYALFNA 26 (29)
T ss_pred HHHHHHHHHHHHHHcCc
Confidence 44444444455555544
No 24
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=20.12 E-value=1.3e+02 Score=19.29 Aligned_cols=15 Identities=0% Similarity=0.257 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 034269 6 ALIASVLLSLVVFHL 20 (100)
Q Consensus 6 ~l~~~ll~sll~l~l 20 (100)
.+++++++.+|++.+
T Consensus 40 ~i~~~~~i~~l~v~~ 54 (59)
T PF09889_consen 40 YIFFGIFILFLAVWI 54 (59)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 25
>PF07359 LEAP-2: Liver-expressed antimicrobial peptide 2 precursor (LEAP-2); InterPro: IPR009955 This family consists of several mammalian liver-expressed antimicrobial peptide 2 (LEAP-2) sequences. LEAP-2 is a cysteine-rich, and cationic protein. LEAP-2 contains a core structure with two disulphide bonds formed by cysteine residues in relative 1-3 and 2-4 positions. LEAP-2 is synthesised as a 77-residue precursor, which is predominantly expressed in the liver and highly conserved among mammals. The largest native LEAP-2 form of 40 amino acid residues is generated from the precursor at a putative cleavage site for a furin-like endoprotease. In contrast to smaller LEAP-2 variants, this peptide exhibits dose-dependent antimicrobial activity against selected microbial model organisms []. The exact function of this family is unclear.; GO: 0042742 defense response to bacterium; PDB: 2L1Q_A.
Probab=20.05 E-value=35 Score=23.43 Aligned_cols=18 Identities=28% Similarity=0.587 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 034269 7 LIASVLLSLVVFHLVEAE 24 (100)
Q Consensus 7 l~~~ll~sll~l~lv~a~ 24 (100)
|++++++.+|+++.|++.
T Consensus 6 l~A~lli~lLL~~QV~~s 23 (77)
T PF07359_consen 6 LFAVLLICLLLLQQVDSS 23 (77)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 556666777777777653
Done!