Query 034269
Match_columns 100
No_of_seqs 103 out of 202
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 20:00:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034269.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034269hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xu2_R Tumor necrosis factor r 38.7 12 0.00041 22.6 1.2 20 46-65 20-39 (47)
2 2h9e_C Anti-coagulant protein 36.9 3.4 0.00012 26.5 -1.6 50 40-93 13-79 (84)
3 4b7j_A Neuraminidase; hydrolas 33.4 14 0.00047 31.3 1.1 12 76-87 271-282 (469)
4 2htq_A Neuraminidase; zanamivi 31.7 19 0.00064 29.9 1.7 17 74-90 187-203 (390)
5 4gdi_A Neuraminidase; influenz 25.6 15 0.00051 30.3 0.0 16 74-89 190-205 (373)
6 1f8d_A Neuraminidase; hydrolas 25.5 16 0.00053 30.3 0.1 17 74-90 188-204 (388)
7 1v0z_A Neuraminidase; glycosid 25.4 16 0.00054 30.3 0.1 17 74-90 188-204 (389)
8 1nmb_N N9 neuraminidase; compl 23.1 25 0.00085 29.8 0.9 8 80-87 276-283 (470)
9 3b7e_A Neuraminidase; 6-bladed 21.9 21 0.00071 29.6 0.2 17 74-90 187-203 (385)
10 3tje_F Tumor necrosis factor r 21.7 30 0.001 24.3 1.0 23 64-89 41-72 (156)
11 3arc_I Photosystem II reaction 21.1 1.2E+02 0.0041 17.5 3.3 16 1-16 1-16 (38)
12 3sal_A Neuraminidase; 6-bladed 21.0 19 0.00064 30.0 -0.2 17 73-89 187-203 (395)
No 1
>1xu2_R Tumor necrosis factor receptor superfamily member; TNFSF, cytokine, CRD, jelly-roll, cysteine-rich, H growth factor receptor complex; 2.35A {Homo sapiens} SCOP: g.24.1.2 PDB: 2kn1_A* 1oqd_K
Probab=38.70 E-value=12 Score=22.64 Aligned_cols=20 Identities=40% Similarity=0.989 Sum_probs=17.2
Q ss_pred hhHHhhcCCCCchHHHHhhH
Q 034269 46 CQARCRLSSRPNLCHRACGT 65 (100)
Q Consensus 46 C~~RC~~~~~~~~C~~~C~~ 65 (100)
|..||+.++.+..|-.+|..
T Consensus 20 C~l~Cs~~~~p~tC~~fC~~ 39 (47)
T 1xu2_R 20 CQLRCSSNTPPLTCQRYCNA 39 (47)
T ss_dssp GGGTTTSSSCCGGGHHHHHC
T ss_pred hhcccCCCCCcchHHHHHhh
Confidence 88999988888999999863
No 2
>2h9e_C Anti-coagulant protein C2; factor XA, NAPC2, hydrolase-hydrolase inhibitor C blood clotting; HET: DTY; 2.20A {Ancylostoma caninum} SCOP: g.22.1.1 PDB: 1cou_A
Probab=36.88 E-value=3.4 Score=26.50 Aligned_cols=50 Identities=26% Similarity=0.561 Sum_probs=21.5
Q ss_pred CCchH-HhhHHhhcC-------CC-CchH-HHHhhHhcCcccccCCCCCCCC-------CCCCcccccccc
Q 034269 40 IDCGG-ACQARCRLS-------SR-PNLC-HRACGTCCARCNCVPPGTAGNT-------EVCPCYANMTTH 93 (100)
Q Consensus 40 ~~C~~-~C~~RC~~~-------~~-~~~C-~~~C~~CC~~C~CVP~Gt~Gn~-------~~CpCY~~~~t~ 93 (100)
.+|++ +|...|+.. .+ ...| .+.|. .-|.|. +|++-|. ++|||+.+-...
T Consensus 13 ~~Cgs~~C~~tC~~~~~~~~~~~~~~~~C~~~~C~---~GC~C~-~G~vr~~~g~CV~~~~Cpc~~~~~~y 79 (84)
T 2h9e_C 13 DSCGSKECDKKCKYDGVEEEDDEEPNVPCLVRVCH---QDCVCE-EGFYRNKDDKCVSAEDCELDNMDFIY 79 (84)
T ss_dssp C-------CCBCCCTTCC----------------------CEEC-SSCEECTTCCEECHHHHGGGGEEEEC
T ss_pred CCCCCCccchhhCccccccccccCCCCCCCCCCCC---cCCCCC-CCeEEcCCCCEECHHHCCCCcCCeEC
Confidence 47999 999999863 22 3678 66665 678885 4888773 568887655443
No 3
>4b7j_A Neuraminidase; hydrolase, NAI, NAIS, oseltamivir, zanamivir, antiviral resistance, immunocompromised, H275Y; HET: 5AX G39; 2.42A {Influenza a virus} PDB: 4b7m_A* 4b7n_A* 4b7q_A*
Probab=33.45 E-value=14 Score=31.34 Aligned_cols=12 Identities=33% Similarity=0.791 Sum_probs=5.1
Q ss_pred CCCCCCCCCCcc
Q 034269 76 GTAGNTEVCPCY 87 (100)
Q Consensus 76 Gt~Gn~~~CpCY 87 (100)
|+.+|.|||.||
T Consensus 271 gs~~HiEECSCY 282 (469)
T 4b7j_A 271 APNYHYEECSCY 282 (469)
T ss_dssp CTTCCCCSCEEE
T ss_pred CCcccceeeeec
Confidence 344444444444
No 4
>2htq_A Neuraminidase; zanamivir, hydrolase; HET: ZMR; 2.20A {Influenza a virus} PDB: 2ht7_A* 2ht8_A* 2ht5_A* 2htr_A* 2htu_A*
Probab=31.74 E-value=19 Score=29.88 Aligned_cols=17 Identities=35% Similarity=0.683 Sum_probs=14.3
Q ss_pred CCCCCCCCCCCCccccc
Q 034269 74 PPGTAGNTEVCPCYANM 90 (100)
Q Consensus 74 P~Gt~Gn~~~CpCY~~~ 90 (100)
.+|+.+|.|||.||-+.
T Consensus 187 l~gsa~HiEECSCYp~~ 203 (390)
T 2htq_A 187 ISFNGGHIEECSCYPND 203 (390)
T ss_dssp ECCTTCCCCSCCCCEET
T ss_pred cCCCcCceEeeeEecCC
Confidence 46889999999999754
No 5
>4gdi_A Neuraminidase; influenza virus, beta-propeller, EC viral protein; HET: NAG BMA FUC FUL GOL MAN; 1.95A {Influenza a virus} PDB: 4gez_A* 4fvk_A* 4gdj_A*
Probab=25.55 E-value=15 Score=30.31 Aligned_cols=16 Identities=31% Similarity=0.326 Sum_probs=13.3
Q ss_pred CCCCCCCCCCCCcccc
Q 034269 74 PPGTAGNTEVCPCYAN 89 (100)
Q Consensus 74 P~Gt~Gn~~~CpCY~~ 89 (100)
.+|+..|.|||.||.+
T Consensus 190 l~~s~~HiEECSCYp~ 205 (373)
T 4gdi_A 190 LNTTGINFEYSTCYTI 205 (373)
T ss_dssp CCCTTCCCEEEEEEEE
T ss_pred cCCCCCCceeeeecCC
Confidence 3688899999999964
No 6
>1f8d_A Neuraminidase; hydrolase, influenza protein, glycosylated PR amino-DANA, hydrolase-hydrolase inhibitor complex; HET: NAG MAN 9AM; 1.40A {Influenza a virus} SCOP: b.68.1.1 PDB: 1a14_N* 1bji_A* 1f8b_A* 1f8c_A* 1f8e_A* 1l7f_A* 1mwe_A* 1nmc_N* 1nnc_A* 2c4a_A* 2c4l_A* 2qwi_A* 2qwj_A* 2qwk_A* 7nn9_A* 1nca_N* 2qwc_A* 1l7h_A* 2qwb_A* 2qwa_A* ...
Probab=25.50 E-value=16 Score=30.35 Aligned_cols=17 Identities=41% Similarity=0.815 Sum_probs=14.4
Q ss_pred CCCCCCCCCCCCccccc
Q 034269 74 PPGTAGNTEVCPCYANM 90 (100)
Q Consensus 74 P~Gt~Gn~~~CpCY~~~ 90 (100)
.+|+.+|.|||.||-+.
T Consensus 188 l~gs~~HiEECSCYp~~ 204 (388)
T 1f8d_A 188 LAGTAKHIEECSCYGER 204 (388)
T ss_dssp CCSSCCCCEEEEEEEET
T ss_pred cCCCcCceEeeeEecCC
Confidence 46889999999999765
No 7
>1v0z_A Neuraminidase; glycosidase, hydrolase; HET: NAG MAN BMA; 1.84A {Influenza a virus} PDB: 1w1x_A* 1w20_A* 1w21_A* 2cml_A*
Probab=25.39 E-value=16 Score=30.34 Aligned_cols=17 Identities=35% Similarity=0.720 Sum_probs=14.5
Q ss_pred CCCCCCCCCCCCccccc
Q 034269 74 PPGTAGNTEVCPCYANM 90 (100)
Q Consensus 74 P~Gt~Gn~~~CpCY~~~ 90 (100)
.+|+.+|.|||.||-+.
T Consensus 188 l~gs~~HiEECSCYp~~ 204 (389)
T 1v0z_A 188 LAGNAQHIEECSCYGAG 204 (389)
T ss_dssp CCSSCCCCEEEEEEEET
T ss_pred cCCCccceEEeeeccCC
Confidence 46889999999999765
No 8
>1nmb_N N9 neuraminidase; complex (hydrolase-immunoglobulin), complex (hydrolase- immunoglobulin) complex; HET: NAG BMA MAN; 2.20A {Influenza a virus} SCOP: b.68.1.1
Probab=23.07 E-value=25 Score=29.82 Aligned_cols=8 Identities=50% Similarity=1.393 Sum_probs=2.9
Q ss_pred CCCCCCcc
Q 034269 80 NTEVCPCY 87 (100)
Q Consensus 80 n~~~CpCY 87 (100)
+.|||.||
T Consensus 276 HiEECscy 283 (470)
T 1nmb_N 276 HIEECSCY 283 (470)
T ss_dssp CCCSCEEE
T ss_pred ceEeeeEe
Confidence 33333333
No 9
>3b7e_A Neuraminidase; 6-bladed beta-propeller, glycosidase, hydrolase, membrane, transmembrane, virion; HET: NAG FUC ZMR; 1.45A {Influenza a virus} PDB: 3beq_A* 3cye_A* 2hty_A* 2hu0_A* 2hu4_A* 3cl2_A* 3ckz_A* 3cl0_A* 3ti4_A* 3nss_A* 3ti3_A* 3ti5_A* 3ti6_A* 2htv_A* 2htw_A*
Probab=21.85 E-value=21 Score=29.59 Aligned_cols=17 Identities=24% Similarity=0.534 Sum_probs=14.3
Q ss_pred CCCCCCCCCCCCccccc
Q 034269 74 PPGTAGNTEVCPCYANM 90 (100)
Q Consensus 74 P~Gt~Gn~~~CpCY~~~ 90 (100)
.+|+.+|.|||.||-+.
T Consensus 187 l~gs~~HiEECSCYp~~ 203 (385)
T 3b7e_A 187 LNAPNYHYEECSCYPDT 203 (385)
T ss_dssp CCCTTCCCEEEEEEEET
T ss_pred cCCCccceEeeeEecCC
Confidence 46889999999999754
No 10
>3tje_F Tumor necrosis factor receptor superfamily member; agonistic antibody, FAB fragment, antibody-receptor complex, cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo sapiens} PDB: 3thm_F*
Probab=21.67 E-value=30 Score=24.34 Aligned_cols=23 Identities=35% Similarity=0.944 Sum_probs=14.1
Q ss_pred hHhcCcccccCCCCCC--------CCCCC-Ccccc
Q 034269 64 GTCCARCNCVPPGTAG--------NTEVC-PCYAN 89 (100)
Q Consensus 64 ~~CC~~C~CVP~Gt~G--------n~~~C-pCY~~ 89 (100)
+.||.+| |||||= ..-+| ||-.+
T Consensus 41 ~~CC~~C---ppG~~v~~~Ct~~~~~t~C~pC~~g 72 (156)
T 3tje_F 41 QFCHKPC---PPGERKARDCTVNGDEPDCVPCQEG 72 (156)
T ss_dssp TTCSSCB---CTTEEESSCCCSSSCCCCEEECCTT
T ss_pred CeECCCC---CCCCeECCcCCCCCCCCcceeCCCC
Confidence 4567666 678772 13567 67655
No 11
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=21.09 E-value=1.2e+02 Score=17.48 Aligned_cols=16 Identities=25% Similarity=0.175 Sum_probs=9.3
Q ss_pred ChhHHHHHHHHHHHHH
Q 034269 1 MAISKALIASVLLSLV 16 (100)
Q Consensus 1 MA~~k~l~~~ll~sll 16 (100)
|.+.|+++-.+++.++
T Consensus 1 MltLKi~Vy~vV~ffv 16 (38)
T 3arc_I 1 METLKITVYIVVTFFV 16 (38)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CeeEEeeehhHHHHHH
Confidence 7777876554444333
No 12
>3sal_A Neuraminidase; 6-bladed beta-propeller, hydrolase, calcium binding, glycosy; HET: NAG BMA; 1.50A {Influenza a virus} PDB: 3san_A* 3ti8_A* 4gb1_A* 3o9j_A* 3o9k_A*
Probab=21.05 E-value=19 Score=29.96 Aligned_cols=17 Identities=35% Similarity=0.710 Sum_probs=14.1
Q ss_pred cCCCCCCCCCCCCcccc
Q 034269 73 VPPGTAGNTEVCPCYAN 89 (100)
Q Consensus 73 VP~Gt~Gn~~~CpCY~~ 89 (100)
.++|..+|.|||.||-+
T Consensus 187 ~l~~~~qHiEECSCYp~ 203 (395)
T 3sal_A 187 EVSFQGGHIEECSCYPN 203 (395)
T ss_dssp EECCTTCCCEEEEEEEE
T ss_pred ecCCCCccceeeeecCC
Confidence 35788899999999965
Done!