Query 034271
Match_columns 99
No_of_seqs 107 out of 209
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 20:02:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034271.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034271hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wtp_A ORF131 protein, CZCE; m 15.9 1.2E+02 0.004 21.5 3.0 37 8-46 56-97 (131)
2 1as5_A Conotoxin Y-PIIIE; neur 14.9 31 0.0011 18.7 -0.2 12 58-69 3-14 (26)
3 2lvc_A Obscurin-like protein 1 13.8 2.2E+02 0.0076 16.7 3.6 28 16-43 14-41 (91)
4 1zlh_B Carboxypeptidase inhibi 13.1 53 0.0018 21.7 0.5 9 55-63 66-74 (75)
5 2bcg_Y Protein YP2, GTP-bindin 11.3 51 0.0017 21.4 0.0 8 53-60 199-206 (206)
6 1vg8_A RAS-related protein RAB 9.5 65 0.0022 20.6 0.0 8 53-60 200-207 (207)
7 4dkx_A RAS-related protein RAB 9.1 70 0.0024 22.3 0.0 12 53-64 201-212 (216)
8 2gf0_A GTP-binding protein DI- 8.4 77 0.0026 20.1 0.0 8 54-61 191-198 (199)
9 2lu7_A Obscurin-like protein 1 8.3 2.1E+02 0.0073 16.6 2.0 19 26-44 14-32 (84)
10 3gv3_A CXCL12 protein; SDF, ch 8.2 80 0.0027 18.7 0.0 11 56-66 3-13 (63)
No 1
>2wtp_A ORF131 protein, CZCE; metal binding protein, heavy metal, copper binding; HET: TRS; 1.50A {Ralstonia metallidurans CH34} PDB: 2wto_A*
Probab=15.93 E-value=1.2e+02 Score=21.54 Aligned_cols=37 Identities=24% Similarity=0.330 Sum_probs=24.5
Q ss_pred CCCCcceeeEecCCCC-----CceeEEEecCCCCCeeeecCCcc
Q 034271 8 PSSSVSNTITLQEPGS-----SQQTLVLRLNPRKKKVTWKEGTV 46 (99)
Q Consensus 8 psss~stTvTv~~~~~-----qq~~L~LR~~~~~~~V~W~edvV 46 (99)
+.+..+|||+|+-... .-+++++.+. .+.|.|.=++.
T Consensus 56 ~aa~asRTI~V~m~~k~InV~~GETVrF~v~--nkt~~W~F~~~ 97 (131)
T 2wtp_A 56 GQSQASRIIDVKPGMRYVNVDSGETVAFRAG--EKIVAWTFAQM 97 (131)
T ss_dssp CGGGCSCEEECCTTCCEEEEETTCEEEEEET--TEEEEEEECCC
T ss_pred CcccCceEEEEccCCeEEEecCCCEEEEEeC--CcEEEEEEecc
Confidence 4456788999987321 2356666665 57899986653
No 2
>1as5_A Conotoxin Y-PIIIE; neurotoxin, acetylcholine; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.4 PDB: 1jlo_A*
Probab=14.86 E-value=31 Score=18.72 Aligned_cols=12 Identities=25% Similarity=0.996 Sum_probs=10.1
Q ss_pred eeeEeccCCCCC
Q 034271 58 KCCIFHKQKPFD 69 (99)
Q Consensus 58 ~CCIyhK~r~f~ 69 (99)
-||.|-+=|.|-
T Consensus 3 pcclyg~cr~~p 14 (26)
T 1as5_A 3 PCCLYGKCRRYP 14 (26)
T ss_dssp CSSSTTCCCCCT
T ss_pred CceeccccccCC
Confidence 499999998884
No 3
>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=13.83 E-value=2.2e+02 Score=16.75 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=16.6
Q ss_pred eEecCCCCCceeEEEecCCCCCeeeecC
Q 034271 16 ITLQEPGSSQQTLVLRLNPRKKKVTWKE 43 (99)
Q Consensus 16 vTv~~~~~qq~~L~LR~~~~~~~V~W~e 43 (99)
++|+....+..+|.-.+..+...|+|--
T Consensus 14 ~~v~~~~g~~v~l~C~v~~p~~~v~W~k 41 (91)
T 2lvc_A 14 VFVHAITSECVMLACEVDREDAPVRWYK 41 (91)
T ss_dssp EEEECCTTCCEEEEEECSCTTSCCEEEE
T ss_pred eEEEEECCCcEEEEEEECCCCcEEEEEE
Confidence 3444333334566666665667899974
No 4
>1zlh_B Carboxypeptidase inhibitor; inhibitor-metallocarboxypeptidase complex, beta-defensin fold (TCI); 1.70A {Rhipicephalus bursa} SCOP: g.9.1.3 g.9.1.3 PDB: 1zli_B 2jto_A 2k2x_A 3d4u_B 3lms_B 3osl_B 2k2y_A 2k2z_A
Probab=13.13 E-value=53 Score=21.68 Aligned_cols=9 Identities=33% Similarity=1.221 Sum_probs=6.3
Q ss_pred cCceeeEec
Q 034271 55 SSKKCCIFH 63 (99)
Q Consensus 55 kSK~CCIyh 63 (99)
+-+.||||-
T Consensus 66 ~~qKCCi~l 74 (75)
T 1zlh_B 66 KGQKCCVWL 74 (75)
T ss_dssp TTEEEECCC
T ss_pred CCCeeEEee
Confidence 346899983
No 5
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=11.34 E-value=51 Score=21.37 Aligned_cols=8 Identities=25% Similarity=0.912 Sum_probs=0.0
Q ss_pred CccCceee
Q 034271 53 KKSSKKCC 60 (99)
Q Consensus 53 KKkSK~CC 60 (99)
+++++|||
T Consensus 199 ~~~~~cc~ 206 (206)
T 2bcg_Y 199 TNTGGCCC 206 (206)
T ss_dssp --------
T ss_pred ccCCCCCC
Confidence 34455555
No 6
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=9.54 E-value=65 Score=20.65 Aligned_cols=8 Identities=13% Similarity=0.414 Sum_probs=0.0
Q ss_pred CccCceee
Q 034271 53 KKSSKKCC 60 (99)
Q Consensus 53 KKkSK~CC 60 (99)
++++.|||
T Consensus 200 ~~~~~c~c 207 (207)
T 1vg8_A 200 ASAESCSC 207 (207)
T ss_dssp --------
T ss_pred cCCCCCCC
Confidence 44444555
No 7
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=9.05 E-value=70 Score=22.33 Aligned_cols=12 Identities=17% Similarity=0.340 Sum_probs=0.0
Q ss_pred CccCceeeEecc
Q 034271 53 KKSSKKCCIFHK 64 (99)
Q Consensus 53 KKkSK~CCIyhK 64 (99)
++++.|||+=|-
T Consensus 201 ~~~~~C~Cl~~~ 212 (216)
T 4dkx_A 201 VSEGGCSCLEHH 212 (216)
T ss_dssp ------------
T ss_pred CCCCCCceeCcc
Confidence 456778898663
No 8
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=8.40 E-value=77 Score=20.07 Aligned_cols=8 Identities=25% Similarity=0.738 Sum_probs=0.0
Q ss_pred ccCceeeE
Q 034271 54 KSSKKCCI 61 (99)
Q Consensus 54 KkSK~CCI 61 (99)
|+.++|||
T Consensus 191 ~~k~~C~~ 198 (199)
T 2gf0_A 191 RVKGKCTL 198 (199)
T ss_dssp --------
T ss_pred CCCCceee
Confidence 34455776
No 9
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=8.28 E-value=2.1e+02 Score=16.55 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=12.0
Q ss_pred eeEEEecCCCCCeeeecCC
Q 034271 26 QTLVLRLNPRKKKVTWKEG 44 (99)
Q Consensus 26 ~~L~LR~~~~~~~V~W~ed 44 (99)
.+|.-++..+...|+|--|
T Consensus 14 v~l~C~vs~p~p~v~W~k~ 32 (84)
T 2lu7_A 14 LELVVHLSGPGGPVRWYKD 32 (84)
T ss_dssp EEEECCCSCCSTTCEEEET
T ss_pred EEEEEEECCCCcEEEEEEC
Confidence 4555555556677999753
No 10
>3gv3_A CXCL12 protein; SDF, chemokine, disulfide bond, cytokine; 1.60A {Homo sapiens} SCOP: d.9.1.1 PDB: 2nwg_A* 2kee_A 2kec_A 2ked_A 3hp3_A 2j7z_A 1qg7_A 1sdf_A 2sdf_A 1a15_A 2kol_A 2k01_A 2k03_A* 2k04_A 2k05_A*
Probab=8.23 E-value=80 Score=18.67 Aligned_cols=11 Identities=18% Similarity=0.392 Sum_probs=0.0
Q ss_pred CceeeEeccCC
Q 034271 56 SKKCCIFHKQK 66 (99)
Q Consensus 56 SK~CCIyhK~r 66 (99)
..|||+|...+
T Consensus 3 ~~Cc~~~~~~~ 13 (63)
T 3gv3_A 3 YRCPCRFFESH 13 (63)
T ss_dssp TSCSCSSCBSC
T ss_pred ceeeeeeeCCC
Done!