Query 034271
Match_columns 99
No_of_seqs 107 out of 209
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 20:02:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034271.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034271hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fwoa_ g.3.16.1 (A:) Oryzain 34.8 7.5 0.00055 21.1 1.2 21 44-64 2-22 (35)
2 d2ngra_ c.37.1.8 (A:) CDC42 {H 27.6 8.2 0.0006 24.1 0.7 11 51-61 180-190 (191)
3 d1m1sa_ b.1.11.2 (A:) WR4 {Nem 9.6 1.4E+02 0.01 17.8 3.3 40 10-49 16-56 (109)
4 d1cfba1 b.1.2.1 (A:610-709) Ne 5.3 2.3E+02 0.017 14.9 2.5 24 21-44 5-28 (100)
5 d1wica_ b.1.11.2 (A:) MSP doma 4.9 3.2E+02 0.023 16.9 3.4 36 13-48 38-74 (152)
6 d1ueya_ b.1.2.1 (A:) KIAA0343 4.7 3E+02 0.022 14.9 3.8 31 14-44 9-40 (127)
7 d1x44a1 b.1.1.4 (A:8-97) Myosi 4.6 2E+02 0.014 15.2 1.9 19 26-44 18-36 (90)
8 d1wfoa1 b.1.2.1 (A:8-124) Side 4.3 3E+02 0.021 14.8 2.5 32 18-49 17-49 (117)
9 d2giya1 b.1.1.1 (A:218-394) Al 3.9 64 0.0047 22.3 -0.9 27 38-65 42-68 (177)
10 d1olma2 b.132.1.1 (A:275-393) 3.7 4.4E+02 0.032 15.4 3.5 30 14-45 6-35 (119)
No 1
>d1fwoa_ g.3.16.1 (A:) Oryzain beta chain {Rice (Oryza sativa) [TaxId: 4530]}
Probab=34.81 E-value=7.5 Score=21.12 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=14.0
Q ss_pred CccccccCCCccCceeeEecc
Q 034271 44 GTVDNEFMGKKSSKKCCIFHK 64 (99)
Q Consensus 44 dvVDNE~mnKKkSK~CCIyhK 64 (99)
.|-|+-.-=--.+-+||||.-
T Consensus 2 ~vCD~~~sCp~~~TCCC~~e~ 22 (35)
T d1fwoa_ 2 HVCDDNFSCPAGSTCSSAFGF 22 (35)
T ss_dssp CCSSSSCCCCSSSEECCCCCS
T ss_pred ccccCcccCCCCCcEEEEecc
Confidence 344555555567889999963
No 2
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.56 E-value=8.2 Score=24.14 Aligned_cols=11 Identities=27% Similarity=0.649 Sum_probs=7.9
Q ss_pred CCCccCceeeE
Q 034271 51 MGKKSSKKCCI 61 (99)
Q Consensus 51 mnKKkSK~CCI 61 (99)
...|++++|||
T Consensus 180 ~~~k~~~~C~i 190 (191)
T d2ngra_ 180 PEPKKSRRCVL 190 (191)
T ss_dssp CSTTCCCSCCC
T ss_pred cCCCCCCCCeE
Confidence 35577888887
No 3
>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=9.65 E-value=1.4e+02 Score=17.85 Aligned_cols=40 Identities=15% Similarity=0.158 Sum_probs=25.7
Q ss_pred CCcceeeEecCCCCCceeEEEecCCC-CCeeeecCCccccc
Q 034271 10 SSVSNTITLQEPGSSQQTLVLRLNPR-KKKVTWKEGTVDNE 49 (99)
Q Consensus 10 ss~stTvTv~~~~~qq~~L~LR~~~~-~~~V~W~edvVDNE 49 (99)
..++++++|.+........+++-..+ +=+|+..-++|+.-
T Consensus 16 ~~g~~~~~l~N~s~~~vafKiktt~~~~y~V~P~~G~I~P~ 56 (109)
T d1m1sa_ 16 TGGNSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAK 56 (109)
T ss_dssp TCEEEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTT
T ss_pred CCCcEEEEEECCCCCcEEEEEEcCCCCeEEEeCCeeEECCC
Confidence 34667888888765444556665433 33677777777754
No 4
>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}
Probab=5.32 E-value=2.3e+02 Score=14.91 Aligned_cols=24 Identities=8% Similarity=0.261 Sum_probs=11.8
Q ss_pred CCCCceeEEEecCCCCCeeeecCC
Q 034271 21 PGSSQQTLVLRLNPRKKKVTWKEG 44 (99)
Q Consensus 21 ~~~qq~~L~LR~~~~~~~V~W~ed 44 (99)
.+..+..|.+......=.|+|...
T Consensus 5 vP~~P~~~~v~~~~~sv~lsW~pp 28 (100)
T d1cfba1 5 VPNAPKLTGITCQADKAEIHWEQQ 28 (100)
T ss_dssp CCCCCEEEEEEECSSEEEEEEECC
T ss_pred CCCcCcCcEEEEcCCEEEEEEcCC
Confidence 333334455554433345778643
No 5
>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.90 E-value=3.2e+02 Score=16.91 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=23.5
Q ss_pred ceeeEecCCCCCceeEEEecCCC-CCeeeecCCcccc
Q 034271 13 SNTITLQEPGSSQQTLVLRLNPR-KKKVTWKEGTVDN 48 (99)
Q Consensus 13 stTvTv~~~~~qq~~L~LR~~~~-~~~V~W~edvVDN 48 (99)
+.+++|++...+....+++-..+ +=+|+...++|+.
T Consensus 38 ~~~l~l~N~s~~~vaFKiktt~p~~y~V~P~~G~i~p 74 (152)
T d1wica_ 38 KTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDP 74 (152)
T ss_dssp CEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECT
T ss_pred EEEEEEECCCCCeEEEEEEcCCCccEEEECCceEECC
Confidence 45677777765545556666543 3378888888876
No 6
>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.66 E-value=3e+02 Score=14.91 Aligned_cols=31 Identities=13% Similarity=0.281 Sum_probs=14.0
Q ss_pred eeeEecCCCCCceeEEEecC-CCCCeeeecCC
Q 034271 14 NTITLQEPGSSQQTLVLRLN-PRKKKVTWKEG 44 (99)
Q Consensus 14 tTvTv~~~~~qq~~L~LR~~-~~~~~V~W~ed 44 (99)
..+.+.+.+..+.-|++... ...=.|+|...
T Consensus 9 ~~~~v~d~P~~P~~~~v~~~~~~sv~l~W~~p 40 (127)
T d1ueya_ 9 TPAPVYDVPNPPFDLELTDQLDKSVQLSWTPG 40 (127)
T ss_dssp CCCCCCCSCCCCEEEEEECCSSSCEEEEEECC
T ss_pred ccccccccCcCCCCcEEEEecCCeEEEEEeCC
Confidence 33444444433344444332 23346777643
No 7
>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.58 E-value=2e+02 Score=15.23 Aligned_cols=19 Identities=16% Similarity=0.321 Sum_probs=12.3
Q ss_pred eeEEEecCCCCCeeeecCC
Q 034271 26 QTLVLRLNPRKKKVTWKEG 44 (99)
Q Consensus 26 ~~L~LR~~~~~~~V~W~ed 44 (99)
.+|.-++..+...|.|--+
T Consensus 18 v~l~C~v~~p~~~v~W~k~ 36 (90)
T d1x44a1 18 VELECEVSEDDANVKWFKN 36 (90)
T ss_dssp EEEEEECSSSSCCCEEEET
T ss_pred EEEEEEECCCCceEEEEEe
Confidence 4555555556678999843
No 8
>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.25 E-value=3e+02 Score=14.85 Aligned_cols=32 Identities=9% Similarity=0.259 Sum_probs=16.2
Q ss_pred ecCCCCCceeEEEec-CCCCCeeeecCCccccc
Q 034271 18 LQEPGSSQQTLVLRL-NPRKKKVTWKEGTVDNE 49 (99)
Q Consensus 18 v~~~~~qq~~L~LR~-~~~~~~V~W~edvVDNE 49 (99)
.+..+..+..|.+.. ....=.|.|..-.-+|.
T Consensus 17 ~~~~P~~P~~~~~~~~~~~sv~v~W~~P~~~~g 49 (117)
T d1wfoa1 17 LDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNG 49 (117)
T ss_dssp SCCCCCCCCCCEEEEECSSEEEEECCCCSCCCS
T ss_pred CCCCCcCCCCcEEEEecCCEEEEEEECCCCCCC
Confidence 333333334444443 33344799987655553
No 9
>d2giya1 b.1.1.1 (A:218-394) Alphaherpesvirus glycoprotein E {Human herpesvirus 1 [TaxId: 10298]}
Probab=3.91 E-value=64 Score=22.27 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=13.2
Q ss_pred eeeecCCccccccCCCccCceeeEeccC
Q 034271 38 KVTWKEGTVDNEFMGKKSSKKCCIFHKQ 65 (99)
Q Consensus 38 ~V~W~edvVDNE~mnKKkSK~CCIyhK~ 65 (99)
.|.|----+ +....-..---=||||+.
T Consensus 42 ~i~Wy~~~~-~~~C~~~rIYEtCIfHP~ 68 (177)
T d2giya1 42 DVVWLRFDV-PTSCAEMRIYESCLYHPQ 68 (177)
T ss_dssp EEEEEEECC-CTTCSCEEEEHHHHHCTT
T ss_pred EEEEEEccC-CCCCceEEEeeeeccCCC
Confidence 366653333 232222222334999985
No 10
>d1olma2 b.132.1.1 (A:275-393) Supernatant protein factor (SPF), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.74 E-value=4.4e+02 Score=15.41 Aligned_cols=30 Identities=3% Similarity=0.120 Sum_probs=18.2
Q ss_pred eeeEecCCCCCceeEEEecCCCCCeeeecCCc
Q 034271 14 NTITLQEPGSSQQTLVLRLNPRKKKVTWKEGT 45 (99)
Q Consensus 14 tTvTv~~~~~qq~~L~LR~~~~~~~V~W~edv 45 (99)
.||+|.... ...|.+....+...+.|.=-+
T Consensus 6 ~tvtV~~G~--~~~v~~~v~~~Gs~l~WeF~t 35 (119)
T d1olma2 6 HSVQISRGS--SHQVEYEILFPGCVLRWQFMS 35 (119)
T ss_dssp EEEEECTTC--EEEEEEEECSTTCEEEEEEEE
T ss_pred EEEEECCCC--EEEEEEEEeCCCcEEEEEEEe
Confidence 467775553 245555555567778887544
Done!