BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034273
(99 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297821194|ref|XP_002878480.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297324318|gb|EFH54739.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 109
Score = 185 bits (470), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 93/109 (85%), Positives = 97/109 (88%), Gaps = 10/109 (9%)
Query: 1 MSRAMDEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNM 50
MS+ M+EDTT GKTEEEEFNTGPLSVLMMSVKNNTQ LLGRVRAFDRHCNM
Sbjct: 1 MSKPMEEDTTQGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNM 60
Query: 51 VLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
VLENVREMWTE+PKTGKGKKKALPVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 61 VLENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 109
>gi|18407411|ref|NP_566107.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|145331435|ref|NP_001078076.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|145339793|ref|NP_567134.3| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|20196966|gb|AAM14847.1| putative small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|20197310|gb|AAC63620.2| putative small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|330255773|gb|AEC10867.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|330255776|gb|AEC10870.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|332646879|gb|AEE80400.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
Length = 109
Score = 183 bits (465), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 92/109 (84%), Positives = 96/109 (88%), Gaps = 10/109 (9%)
Query: 1 MSRAMDEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNM 50
MS+ M+EDT GKTEEEEFNTGPLSVLMMSVKNNTQ LLGRVRAFDRHCNM
Sbjct: 1 MSKPMEEDTNQGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNM 60
Query: 51 VLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
VLENVREMWTE+PKTGKGKKKALPVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 61 VLENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 109
>gi|297824871|ref|XP_002880318.1| hypothetical protein ARALYDRAFT_483945 [Arabidopsis lyrata subsp.
lyrata]
gi|21554692|gb|AAM63661.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
gi|21592784|gb|AAM64733.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
gi|297326157|gb|EFH56577.1| hypothetical protein ARALYDRAFT_483945 [Arabidopsis lyrata subsp.
lyrata]
Length = 105
Score = 179 bits (454), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 90/105 (85%), Positives = 93/105 (88%), Gaps = 10/105 (9%)
Query: 5 MDEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLEN 54
M+EDT GKTEEEEFNTGPLSVLMMSVKNNTQ LLGRVRAFDRHCNMVLEN
Sbjct: 1 MEEDTNQGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLEN 60
Query: 55 VREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
VREMWTE+PKTGKGKKKALPVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 61 VREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 105
>gi|30690747|ref|NP_850477.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|42571273|ref|NP_973710.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|145332931|ref|NP_001078331.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|7362764|emb|CAB83134.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
gi|28466881|gb|AAO44049.1| At2g47640 [Arabidopsis thaliana]
gi|110743879|dbj|BAE99774.1| putative small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|330255774|gb|AEC10868.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|330255775|gb|AEC10869.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|332646880|gb|AEE80401.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
Length = 108
Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/109 (84%), Positives = 96/109 (88%), Gaps = 11/109 (10%)
Query: 1 MSRAMDEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNM 50
MS+ M+EDT GKTEEEEFNTGPLSVLMMSVKNNTQ LLGRVRAFDRHCNM
Sbjct: 1 MSKPMEEDT-NGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNM 59
Query: 51 VLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
VLENVREMWTE+PKTGKGKKKALPVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 60 VLENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 108
>gi|356513032|ref|XP_003525218.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Glycine max]
Length = 108
Score = 177 bits (449), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 92/109 (84%), Positives = 94/109 (86%), Gaps = 11/109 (10%)
Query: 1 MSRAMDEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNM 50
MSR M+EDT G K EEEEFNTGPLSVLMMSVKNNTQ LLGRVRAFDRHCNM
Sbjct: 1 MSRPMEEDTVG-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNM 59
Query: 51 VLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
VLENVREMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 60 VLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
>gi|351727138|ref|NP_001238430.1| uncharacterized protein LOC100500203 [Glycine max]
gi|255629692|gb|ACU15195.1| unknown [Glycine max]
Length = 117
Score = 176 bits (447), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/109 (83%), Positives = 94/109 (86%), Gaps = 11/109 (10%)
Query: 1 MSRAMDEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNM 50
MSR M+EDT GK EEEEFNTGPLSVLMMSVKNNTQ LLGRVRAFDRHCNM
Sbjct: 1 MSRPMEEDT-AGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNM 59
Query: 51 VLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
VLENVREMWTE+PKTGKGKKK+ PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 60 VLENVREMWTEVPKTGKGKKKSQPVNKDRFISKMFLRGDSVIIVLRNPK 108
>gi|359806642|ref|NP_001241022.1| uncharacterized protein LOC100793233 [Glycine max]
gi|255633912|gb|ACU17317.1| unknown [Glycine max]
Length = 108
Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/109 (83%), Positives = 93/109 (85%), Gaps = 11/109 (10%)
Query: 1 MSRAMDEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNM 50
MSR M+ED GK EEEEFNTGPLSVLMMSVKNNTQ LLGRVRAFDRHCNM
Sbjct: 1 MSRPMEEDA-AGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNM 59
Query: 51 VLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
VLENVREMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 60 VLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
>gi|192910682|gb|ACF06449.1| small nuclear ribonucleoprotein-like protein [Elaeis guineensis]
Length = 105
Score = 176 bits (446), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 88/105 (83%), Positives = 91/105 (86%), Gaps = 10/105 (9%)
Query: 5 MDEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLEN 54
M++D GK EEEEFNTGPLSVLMMSVKNNTQ LLGRVRAFDRHCNMVLEN
Sbjct: 1 MEDDANAGKKEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 60
Query: 55 VREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
VREMWTE+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61 VREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 105
>gi|357521397|ref|XP_003630987.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
gi|355525009|gb|AET05463.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
gi|388506390|gb|AFK41261.1| unknown [Medicago truncatula]
Length = 108
Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/109 (83%), Positives = 93/109 (85%), Gaps = 11/109 (10%)
Query: 1 MSRAMDEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNM 50
MSR M+ED G K EEEEFNTGPLSVLMMSVKNNTQ LLGRVRAFDRHCNM
Sbjct: 1 MSRPMEEDAVG-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNM 59
Query: 51 VLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
VLENVREMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 60 VLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
>gi|449457536|ref|XP_004146504.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Cucumis sativus]
gi|449499984|ref|XP_004160970.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Cucumis sativus]
Length = 107
Score = 175 bits (444), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 91/109 (83%), Positives = 94/109 (86%), Gaps = 12/109 (11%)
Query: 1 MSRAMDEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNM 50
MSR M+EDT+ K EEEEFNTGPLSVLMMSVKNNTQ LLGRVRAFDRHCNM
Sbjct: 1 MSRPMEEDTS--KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNM 58
Query: 51 VLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
VLENVREMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 59 VLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107
>gi|297604251|ref|NP_001055168.2| Os05g0314100 [Oryza sativa Japonica Group]
gi|54291778|gb|AAV32147.1| putative small nuclear ribonucleoprotein D2 [Oryza sativa Japonica
Group]
gi|215768148|dbj|BAH00377.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768714|dbj|BAH00943.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218196532|gb|EEC78959.1| hypothetical protein OsI_19425 [Oryza sativa Indica Group]
gi|222631079|gb|EEE63211.1| hypothetical protein OsJ_18021 [Oryza sativa Japonica Group]
gi|255676234|dbj|BAF17082.2| Os05g0314100 [Oryza sativa Japonica Group]
Length = 105
Score = 174 bits (442), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 88/105 (83%), Positives = 91/105 (86%), Gaps = 10/105 (9%)
Query: 5 MDEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLEN 54
M E+ T GK EEEEF+TGPLSVLMMSVKNNTQ LLGRVRAFDRHCNMVLEN
Sbjct: 1 MAEEATQGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 60
Query: 55 VREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
VREMWTE+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61 VREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 105
>gi|116780023|gb|ABK21523.1| unknown [Picea sitchensis]
Length = 108
Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/109 (82%), Positives = 93/109 (85%), Gaps = 11/109 (10%)
Query: 1 MSRAMDEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNM 50
MS+ MDED KTEEEEFNTGPLSVLMMSVKNNTQ LLGRVRAFDRHCNM
Sbjct: 1 MSKPMDEDMPE-KTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNM 59
Query: 51 VLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
VLENV+EMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 60 VLENVKEMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
>gi|224068340|ref|XP_002302713.1| predicted protein [Populus trichocarpa]
gi|224128478|ref|XP_002320342.1| predicted protein [Populus trichocarpa]
gi|118481477|gb|ABK92681.1| unknown [Populus trichocarpa]
gi|222844439|gb|EEE81986.1| predicted protein [Populus trichocarpa]
gi|222861115|gb|EEE98657.1| predicted protein [Populus trichocarpa]
Length = 108
Score = 172 bits (435), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 89/109 (81%), Positives = 92/109 (84%), Gaps = 11/109 (10%)
Query: 1 MSRAMDEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNM 50
MSR M+ED K EEEEF+TGPLSVLMMSVKNNTQ LLGRVRAFDRHCNM
Sbjct: 1 MSRPMEEDAPS-KNEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNM 59
Query: 51 VLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
VLENVREMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 60 VLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
>gi|212722184|ref|NP_001131740.1| uncharacterized protein LOC100193106 [Zea mays]
gi|194692396|gb|ACF80282.1| unknown [Zea mays]
gi|195629728|gb|ACG36505.1| small nuclear ribonucleoprotein Sm D2 [Zea mays]
gi|413918934|gb|AFW58866.1| Small nuclear ribonucleoprotein Sm D2 isoform 1 [Zea mays]
gi|413918935|gb|AFW58867.1| Small nuclear ribonucleoprotein Sm D2 isoform 2 [Zea mays]
Length = 105
Score = 172 bits (435), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 86/105 (81%), Positives = 90/105 (85%), Gaps = 10/105 (9%)
Query: 5 MDEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLEN 54
M ++ GK EEEEF+TGPLSVLMMSVKNNTQ LLGRVRAFDRHCNMVLEN
Sbjct: 1 MADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 60
Query: 55 VREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
VREMWTE+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61 VREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 105
>gi|413918936|gb|AFW58868.1| hypothetical protein ZEAMMB73_850141 [Zea mays]
Length = 104
Score = 171 bits (433), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 86/102 (84%), Positives = 88/102 (86%), Gaps = 10/102 (9%)
Query: 8 DTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVRE 57
D GK EEEEF+TGPLSVLMMSVKNNTQ LLGRVRAFDRHCNMVLENVRE
Sbjct: 3 DENAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 62
Query: 58 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
MWTE+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 63 MWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 104
>gi|217075318|gb|ACJ86019.1| unknown [Medicago truncatula]
Length = 108
Score = 171 bits (433), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 89/109 (81%), Positives = 91/109 (83%), Gaps = 11/109 (10%)
Query: 1 MSRAMDEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNM 50
MSR M+ED G K EEEEFNTGPLSVLMMSVKNNTQ LLGRV AFDRHCNM
Sbjct: 1 MSRPMEEDAVG-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVGAFDRHCNM 59
Query: 51 VLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
VLENVREMW E+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 60 VLENVREMWAEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
>gi|212720721|ref|NP_001132149.1| uncharacterized protein LOC100193568 [Zea mays]
gi|194693576|gb|ACF80872.1| unknown [Zea mays]
gi|414586342|tpg|DAA36913.1| TPA: hypothetical protein ZEAMMB73_879106 [Zea mays]
gi|414586343|tpg|DAA36914.1| TPA: hypothetical protein ZEAMMB73_879106 [Zea mays]
Length = 105
Score = 171 bits (433), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 86/105 (81%), Positives = 90/105 (85%), Gaps = 10/105 (9%)
Query: 5 MDEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLEN 54
M ++ GK EEEEF+TGPLSVLMMSVKNNTQ LLGRVRAFDRHCNMVLEN
Sbjct: 1 MADENEAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 60
Query: 55 VREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
VREMWTE+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61 VREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 105
>gi|255573198|ref|XP_002527528.1| small nuclear ribonucleoprotein sm d2, putative [Ricinus communis]
gi|223533078|gb|EEF34837.1| small nuclear ribonucleoprotein sm d2, putative [Ricinus communis]
Length = 103
Score = 171 bits (432), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 88/105 (83%), Positives = 91/105 (86%), Gaps = 12/105 (11%)
Query: 5 MDEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLEN 54
M+ED T K EEEEFNTGPLSVLMMSVKNNTQ LLGRVRAFDRHCNMVLEN
Sbjct: 1 MEEDVT--KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 58
Query: 55 VREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
VREMWTE+PKTGKGKKKA+PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 59 VREMWTEVPKTGKGKKKAMPVNKDRFISKMFLRGDSVIIVLRNPK 103
>gi|357521399|ref|XP_003630988.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
gi|355525010|gb|AET05464.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
Length = 104
Score = 170 bits (431), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 88/105 (83%), Positives = 90/105 (85%), Gaps = 11/105 (10%)
Query: 5 MDEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLEN 54
M+ED G K EEEEFNTGPLSVLMMSVKNNTQ LLGRVRAFDRHCNMVLEN
Sbjct: 1 MEEDAVG-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 59
Query: 55 VREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
VREMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 60 VREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 104
>gi|242076520|ref|XP_002448196.1| hypothetical protein SORBIDRAFT_06g022770 [Sorghum bicolor]
gi|241939379|gb|EES12524.1| hypothetical protein SORBIDRAFT_06g022770 [Sorghum bicolor]
Length = 105
Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/104 (81%), Positives = 89/104 (85%), Gaps = 10/104 (9%)
Query: 5 MDEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLEN 54
M ++ GK EEEEF+TGPLSVLMMSVKNNTQ LLGRVRAFDRHCNMVLEN
Sbjct: 1 MADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 60
Query: 55 VREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
VREMWTE+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP
Sbjct: 61 VREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 104
>gi|414586344|tpg|DAA36915.1| TPA: hypothetical protein ZEAMMB73_879106 [Zea mays]
Length = 102
Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 85/99 (85%), Positives = 87/99 (87%), Gaps = 10/99 (10%)
Query: 11 GGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWT 60
GK EEEEF+TGPLSVLMMSVKNNTQ LLGRVRAFDRHCNMVLENVREMWT
Sbjct: 4 AGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 63
Query: 61 ELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
E+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 64 EVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 102
>gi|225424416|ref|XP_002285043.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Vitis vinifera]
Length = 107
Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 88/109 (80%), Positives = 92/109 (84%), Gaps = 12/109 (11%)
Query: 1 MSRAMDEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNM 50
MS M+ED+ K EEE+FNTGPLSVLMMSVKNNTQ LLGRVRAFDRHCNM
Sbjct: 1 MSGPMEEDS--AKNEEEDFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNM 58
Query: 51 VLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
VLENVREMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 59 VLENVREMWTEVPKTGKGKKKANPVNKDRFISKMFLRGDSVIIVLRNPK 107
>gi|357126948|ref|XP_003565149.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
isoform 1 [Brachypodium distachyon]
gi|357126950|ref|XP_003565150.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
isoform 2 [Brachypodium distachyon]
Length = 105
Score = 168 bits (425), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 85/105 (80%), Positives = 89/105 (84%), Gaps = 10/105 (9%)
Query: 5 MDEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLEN 54
M E+ GK EEEEF+TGPLSVLM+SVKNNTQ LLGRVRAFDRHCNMVLEN
Sbjct: 1 MAEEPATGKKEEEEFSTGPLSVLMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 60
Query: 55 VREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
VREMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61 VREMWTEVPKTGKGKKKAHPVNKDRFISKMFLRGDSVIIVLRNPK 105
>gi|226506222|ref|NP_001147167.1| LOC100280773 [Zea mays]
gi|195607934|gb|ACG25797.1| small nuclear ribonucleoprotein Sm D2 [Zea mays]
gi|195622778|gb|ACG33219.1| small nuclear ribonucleoprotein Sm D2 [Zea mays]
gi|238013460|gb|ACR37765.1| unknown [Zea mays]
gi|413942324|gb|AFW74973.1| Small nuclear ribonucleoprotein Sm D2 isoform 1 [Zea mays]
gi|413942325|gb|AFW74974.1| Small nuclear ribonucleoprotein Sm D2 isoform 2 [Zea mays]
gi|413942326|gb|AFW74975.1| Small nuclear ribonucleoprotein Sm D2 isoform 3 [Zea mays]
Length = 104
Score = 167 bits (423), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 85/102 (83%), Positives = 88/102 (86%), Gaps = 10/102 (9%)
Query: 8 DTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVRE 57
+ T K EEEEF+TGPLSVLMMSVKNNTQ LLGRVRAFDRHCNMVLENVRE
Sbjct: 3 EETNIKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 62
Query: 58 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
MWTE+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 63 MWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 104
>gi|326493364|dbj|BAJ85143.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 107
Score = 167 bits (422), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 83/98 (84%), Positives = 87/98 (88%), Gaps = 10/98 (10%)
Query: 12 GKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTE 61
GK EEEEF+TGPLS+LM+SVKNNTQ LLGRVRAFDRHCNMVLENVREMWTE
Sbjct: 10 GKKEEEEFSTGPLSILMLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 69
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 70 VPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 107
>gi|297737605|emb|CBI26806.3| unnamed protein product [Vitis vinifera]
Length = 103
Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 86/105 (81%), Positives = 90/105 (85%), Gaps = 12/105 (11%)
Query: 5 MDEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLEN 54
M+ED+ K EEE+FNTGPLSVLMMSVKNNTQ LLGRVRAFDRHCNMVLEN
Sbjct: 1 MEEDS--AKNEEEDFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 58
Query: 55 VREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
VREMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 59 VREMWTEVPKTGKGKKKANPVNKDRFISKMFLRGDSVIIVLRNPK 103
>gi|297743892|emb|CBI36862.3| unnamed protein product [Vitis vinifera]
Length = 170
Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 84/103 (81%), Positives = 86/103 (83%), Gaps = 10/103 (9%)
Query: 7 EDTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVR 56
ED K E EEF+TGPLSVLMMSVKNNTQ LLGRVRAFDRHCNMVLENVR
Sbjct: 68 EDDATAKNEGEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 127
Query: 57 EMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
EMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 128 EMWTEVPKTGKGKKKANPVNKDRFISKMFLRGDSVIIVLRNPK 170
>gi|242086617|ref|XP_002439141.1| hypothetical protein SORBIDRAFT_09g001270 [Sorghum bicolor]
gi|190688742|gb|ACE86405.1| putative small nuclear ribonucleoprotein D2 [Sorghum bicolor]
gi|241944426|gb|EES17571.1| hypothetical protein SORBIDRAFT_09g001270 [Sorghum bicolor]
Length = 104
Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 84/101 (83%), Positives = 87/101 (86%), Gaps = 10/101 (9%)
Query: 8 DTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVRE 57
+ T K EEEEF+TGPLSVLMMSVKNNTQ LLGRVRAFDRHCNMVLENVRE
Sbjct: 3 EETNVKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 62
Query: 58 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
MWTE+PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP
Sbjct: 63 MWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 103
>gi|225437378|ref|XP_002268945.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Vitis vinifera]
Length = 104
Score = 164 bits (415), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 84/103 (81%), Positives = 86/103 (83%), Gaps = 10/103 (9%)
Query: 7 EDTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVR 56
ED K E EEF+TGPLSVLMMSVKNNTQ LLGRVRAFDRHCNMVLENVR
Sbjct: 2 EDDATAKNEGEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 61
Query: 57 EMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
EMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 62 EMWTEVPKTGKGKKKANPVNKDRFISKMFLRGDSVIIVLRNPK 104
>gi|388501344|gb|AFK38738.1| unknown [Medicago truncatula]
Length = 97
Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 78/95 (82%), Positives = 81/95 (85%), Gaps = 10/95 (10%)
Query: 15 EEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPK 64
+EEEFN GPLSVL MSV+NNTQ LLGRV AFDRHCNMVLENVREMWTE+PK
Sbjct: 3 QEEEFNIGPLSVLYMSVRNNTQVLINCRNNKKLLGRVMAFDRHCNMVLENVREMWTEVPK 62
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
TGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 63 TGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 97
>gi|357495275|ref|XP_003617926.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
gi|355519261|gb|AET00885.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
Length = 159
Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 78/95 (82%), Positives = 81/95 (85%), Gaps = 10/95 (10%)
Query: 15 EEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPK 64
+EEEFN GPLSVL MSV+NNTQ LLGRV AFDRHCNMVLENVREMWTE+PK
Sbjct: 65 QEEEFNIGPLSVLYMSVRNNTQVLINCRNNKKLLGRVMAFDRHCNMVLENVREMWTEVPK 124
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
TGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 125 TGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 159
>gi|380027112|ref|XP_003697276.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Apis florea]
Length = 133
Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 73/90 (81%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTELP+TGKG
Sbjct: 37 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 96
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKKA PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 97 KKKAKPVNKDRFISKMFLRGDSVILVLRNP 126
>gi|328792204|ref|XP_003251694.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Apis mellifera]
Length = 122
Score = 147 bits (372), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 73/90 (81%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTELP+TGKG
Sbjct: 26 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 85
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKKA PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 86 KKKAKPVNKDRFISKMFLRGDSVILVLRNP 115
>gi|66500455|ref|XP_397475.2| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
isoform 1 [Apis mellifera]
gi|340709815|ref|XP_003393496.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Bombus terrestris]
gi|350410361|ref|XP_003489020.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Bombus impatiens]
gi|383861912|ref|XP_003706428.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Megachile rotundata]
Length = 120
Score = 147 bits (372), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 73/90 (81%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTELP+TGKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKKA PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKAKPVNKDRFISKMFLRGDSVILVLRNP 113
>gi|156544546|ref|XP_001607849.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Nasonia vitripennis]
Length = 120
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/90 (80%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTELP+TGKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKKA PVNKDRFISKMFLRGDSVI+V+RNP
Sbjct: 84 KKKAKPVNKDRFISKMFLRGDSVILVVRNP 113
>gi|307177333|gb|EFN66506.1| Probable small nuclear ribonucleoprotein Sm D2 [Camponotus
floridanus]
Length = 137
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/90 (80%), Positives = 76/90 (84%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTELP+TGKG
Sbjct: 41 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 100
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKKA PVNKDRFI KMFLRGDSVI+VLRNP
Sbjct: 101 KKKAKPVNKDRFIPKMFLRGDSVILVLRNP 130
>gi|321460184|gb|EFX71229.1| hypothetical protein DAPPUDRAFT_309154 [Daphnia pulex]
Length = 122
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 71/90 (78%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+P+TGKG
Sbjct: 25 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTGKG 84
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 85 KKKSKPVNKDRFISKMFLRGDSVILVLRNP 114
>gi|307194529|gb|EFN76821.1| Probable small nuclear ribonucleoprotein Sm D2 [Harpegnathos
saltator]
gi|322786953|gb|EFZ13177.1| hypothetical protein SINV_00701 [Solenopsis invicta]
Length = 110
Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 72/90 (80%), Positives = 76/90 (84%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTELP+TGKG
Sbjct: 14 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 73
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKKA PVNKDRFI KMFLRGDSVI+VLRNP
Sbjct: 74 KKKAKPVNKDRFIPKMFLRGDSVILVLRNP 103
>gi|145343983|ref|XP_001416522.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576747|gb|ABO94815.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 103
Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 73/102 (71%), Positives = 78/102 (76%), Gaps = 10/102 (9%)
Query: 8 DTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVRE 57
D G EE EF TGPLSVL SVK NTQ LL RV+AFDRHCNMVLENV+E
Sbjct: 2 DARDGDKEENEFVTGPLSVLTASVKANTQVLINCRNNRKLLARVKAFDRHCNMVLENVKE 61
Query: 58 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
+WTE+PKTGKG KA PVNKDRFISKMFLRGDSVI+VLRNPK
Sbjct: 62 IWTEVPKTGKGAAKAKPVNKDRFISKMFLRGDSVILVLRNPK 103
>gi|302766595|ref|XP_002966718.1| hypothetical protein SELMODRAFT_439675 [Selaginella moellendorffii]
gi|300166138|gb|EFJ32745.1| hypothetical protein SELMODRAFT_439675 [Selaginella moellendorffii]
Length = 1249
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/108 (75%), Positives = 88/108 (81%), Gaps = 14/108 (12%)
Query: 2 SRAMDEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMV 51
+RAM+EDT +EEEFN GPLSVL SVK NTQ LLGRV+AFDRHCNMV
Sbjct: 1025 ARAMEEDTK----KEEEFNIGPLSVLTSSVKQNTQVLINCRNNRKLLGRVKAFDRHCNMV 1080
Query: 52 LENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
LENVREMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVL+NPK
Sbjct: 1081 LENVREMWTEVPKTGKGKKKAKPVNKDRFISKMFLRGDSVIIVLKNPK 1128
>gi|115629150|ref|XP_001178435.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like
[Strongylocentrotus purpuratus]
gi|115918091|ref|XP_001177365.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like
[Strongylocentrotus purpuratus]
Length = 118
Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 68/90 (75%), Positives = 75/90 (83%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE PK GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTETPKAGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KK++ PVNKDR+I+KMFLRGDSVI+VLRNP
Sbjct: 84 KKRSKPVNKDRYITKMFLRGDSVILVLRNP 113
>gi|384247738|gb|EIE21224.1| small nuclear ribonucleo protein Sm D2 [Coccomyxa subellipsoidea
C-169]
Length = 110
Score = 140 bits (354), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 69/97 (71%), Positives = 79/97 (81%), Gaps = 10/97 (10%)
Query: 13 KTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTEL 62
K EEE F TGPLSVL SVK+N+Q LLGRV+AFDRHCNM+LENV+EMWTE+
Sbjct: 14 KREEELFRTGPLSVLTTSVKSNSQVLINCRNNRKLLGRVKAFDRHCNMILENVKEMWTEI 73
Query: 63 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
PKTGKGKK + PVNKDRFI K+F+RGDSVI+VLRNPK
Sbjct: 74 PKTGKGKKGSTPVNKDRFIPKLFIRGDSVILVLRNPK 110
>gi|168057690|ref|XP_001780846.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667702|gb|EDQ54325.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 99
Score = 140 bits (353), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 80/97 (82%), Positives = 85/97 (87%), Gaps = 10/97 (10%)
Query: 13 KTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTEL 62
KTEEEEF+TGPLSVL MSVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+
Sbjct: 3 KTEEEEFSTGPLSVLAMSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEV 62
Query: 63 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
PKTGKGKKKA PVNKDRFISKMFLRG+SVIIVLRNPK
Sbjct: 63 PKTGKGKKKAKPVNKDRFISKMFLRGESVIIVLRNPK 99
>gi|328768266|gb|EGF78313.1| hypothetical protein BATDEDRAFT_90808 [Batrachochytrium
dendrobatidis JAM81]
Length = 115
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/93 (72%), Positives = 75/93 (80%), Gaps = 10/93 (10%)
Query: 15 EEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPK 64
EE EF TGPLS+L +VKN++Q LL RV+AFDRHCNMVLENV+EMWTE P+
Sbjct: 21 EEAEFQTGPLSILTQAVKNSSQVLVVCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPQ 80
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 97
TGKG KKA PVNKDRFISKMFLRGDSVI+VLRN
Sbjct: 81 TGKGIKKAKPVNKDRFISKMFLRGDSVILVLRN 113
>gi|218189807|gb|EEC72234.1| hypothetical protein OsI_05349 [Oryza sativa Indica Group]
Length = 96
Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 64/73 (87%), Positives = 71/73 (97%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
++++ +NN +LLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKALPVNKDRFISKMFL
Sbjct: 24 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFL 83
Query: 87 RGDSVIIVLRNPK 99
RGDSVIIVLRNPK
Sbjct: 84 RGDSVIIVLRNPK 96
>gi|307108556|gb|EFN56796.1| hypothetical protein CHLNCDRAFT_22041 [Chlorella variabilis]
Length = 115
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/100 (68%), Positives = 76/100 (76%), Gaps = 13/100 (13%)
Query: 13 KTEEEEFNTGPLSVLMMS-------------VKNNTQLLGRVRAFDRHCNMVLENVREMW 59
K EE+ F TGPLSVL MS +NN +LLGRV+AFDRHCNMVLENV+E W
Sbjct: 16 KKEEDLFRTGPLSVLTMSRCLRVACVQVLINCRNNRKLLGRVKAFDRHCNMVLENVKEFW 75
Query: 60 TELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
TE+PK GKG K + PVNKDRFISKMFLRGDSVI+VLRNPK
Sbjct: 76 TEIPKRGKGAKASKPVNKDRFISKMFLRGDSVILVLRNPK 115
>gi|443703701|gb|ELU01136.1| hypothetical protein CAPTEDRAFT_149444 [Capitella teleta]
Length = 118
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/97 (77%), Positives = 82/97 (84%), Gaps = 10/97 (10%)
Query: 12 GKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTE 61
+ E+EEFNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE
Sbjct: 18 AQREQEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE 77
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
+PKTGKGKKK+ PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 78 VPKTGKGKKKSKPVNKDRFISKMFLRGDSVILVLRNP 114
>gi|308801164|ref|XP_003075361.1| small nuclear ribonucleoprotein D2-like protein (ISS) [Ostreococcus
tauri]
gi|116061917|emb|CAL52635.1| small nuclear ribonucleoprotein D2-like protein (ISS), partial
[Ostreococcus tauri]
Length = 103
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/91 (73%), Positives = 73/91 (80%), Gaps = 10/91 (10%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
F TGPLSVL SVK NTQ LL RV+AFDRHCNMVLENV+E+WTE+PKTGKG
Sbjct: 13 FTTGPLSVLTASVKANTQVLINCRNNRKLLARVKAFDRHCNMVLENVKEIWTEVPKTGKG 72
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
KA PVNKDRF+SKMFLRGDSVI+VLRNPK
Sbjct: 73 SAKAKPVNKDRFVSKMFLRGDSVILVLRNPK 103
>gi|241690286|ref|XP_002411748.1| small nuclear ribonucleoprotein sm D2, putative [Ixodes scapularis]
gi|215504583|gb|EEC14077.1| small nuclear ribonucleoprotein sm D2, putative [Ixodes scapularis]
gi|442752791|gb|JAA68555.1| Putative small nuclear ribonucleoprotein d2 polypeptide [Ixodes
ricinus]
Length = 118
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/90 (75%), Positives = 74/90 (82%), Gaps = 11/90 (12%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PKTGK
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEIPKTGKS 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KK PVNKDR+ISKMFLRGDSVI+VL+NP
Sbjct: 84 KKNN-PVNKDRYISKMFLRGDSVILVLKNP 112
>gi|221114937|ref|XP_002158231.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Hydra magnipapillata]
Length = 118
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/90 (74%), Positives = 75/90 (83%), Gaps = 11/90 (12%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
F TGPLSVLM SVKNNTQ LLGRV+AFDRHCNMVLENV+EMW E+PKTGKG
Sbjct: 24 FKTGPLSVLMTSVKNNTQVLINCRNNRKLLGRVKAFDRHCNMVLENVKEMWYEIPKTGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKA P+NKDR+I+KMFLRGDSVI+VL+NP
Sbjct: 84 -KKAKPINKDRYIAKMFLRGDSVILVLKNP 112
>gi|427786227|gb|JAA58565.1| Putative small nuclear ribonucleoprotein d2 polypeptide
[Rhipicephalus pulchellus]
Length = 118
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/90 (75%), Positives = 74/90 (82%), Gaps = 11/90 (12%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PKTGK
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEIPKTGKS 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KK PVNKDR+ISKMFLRGDSVI+VL+NP
Sbjct: 84 KKNN-PVNKDRYISKMFLRGDSVILVLKNP 112
>gi|222619939|gb|EEE56071.1| hypothetical protein OsJ_04893 [Oryza sativa Japonica Group]
Length = 104
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/82 (76%), Positives = 73/82 (89%)
Query: 18 EFNTGPLSVLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 77
E+ + ++++ +NN +LLGRVRAFD HCNMVLENVREMWTE+PKTGKGKKKALPVNK
Sbjct: 23 EYCNREANQVLINCQNNKKLLGRVRAFDSHCNMVLENVREMWTEVPKTGKGKKKALPVNK 82
Query: 78 DRFISKMFLRGDSVIIVLRNPK 99
DRFISKMFLRGDSVIIVL+NPK
Sbjct: 83 DRFISKMFLRGDSVIIVLKNPK 104
>gi|57900175|dbj|BAD88260.1| putative small nuclear ribonucleoprotein [Oryza sativa Japonica
Group]
Length = 431
Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats.
Identities = 62/73 (84%), Positives = 70/73 (95%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
++++ +NN +LLGRVRAFD HCNMVLENVREMWTE+PKTGKGKKKALPVNKDRFISKMFL
Sbjct: 359 VLINCQNNKKLLGRVRAFDSHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFL 418
Query: 87 RGDSVIIVLRNPK 99
RGDSVIIVL+NPK
Sbjct: 419 RGDSVIIVLKNPK 431
>gi|346468901|gb|AEO34295.1| hypothetical protein [Amblyomma maculatum]
gi|346468903|gb|AEO34296.1| hypothetical protein [Amblyomma maculatum]
gi|346468905|gb|AEO34297.1| hypothetical protein [Amblyomma maculatum]
Length = 118
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/90 (74%), Positives = 74/90 (82%), Gaps = 11/90 (12%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+P+TGK
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEIPRTGKS 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KK PVNKDR+ISKMFLRGDSVI+VL+NP
Sbjct: 84 KKNN-PVNKDRYISKMFLRGDSVILVLKNP 112
>gi|255070809|ref|XP_002507486.1| small nuclear ribonucleoprotein sm D2 [Micromonas sp. RCC299]
gi|226522761|gb|ACO68744.1| small nuclear ribonucleoprotein sm D2 [Micromonas sp. RCC299]
Length = 101
Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 65/97 (67%), Positives = 77/97 (79%), Gaps = 10/97 (10%)
Query: 13 KTEEEEFNTGPLSVLMMSVK----------NNTQLLGRVRAFDRHCNMVLENVREMWTEL 62
K E ++F GPLSVL SVK NN +LLGRV+AFDRHCNMVLENV+E+WTE+
Sbjct: 5 KNEGQDFQAGPLSVLSHSVKTSAQVLISCRNNRKLLGRVKAFDRHCNMVLENVKELWTEI 64
Query: 63 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
PKTGKG KKA ++KDRF+SKMF+RGDSVI+VLRNPK
Sbjct: 65 PKTGKGCKKARTISKDRFLSKMFIRGDSVILVLRNPK 101
>gi|196006700|ref|XP_002113216.1| hypothetical protein TRIADDRAFT_57149 [Trichoplax adhaerens]
gi|190583620|gb|EDV23690.1| hypothetical protein TRIADDRAFT_57149 [Trichoplax adhaerens]
Length = 173
Score = 134 bits (336), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 66/97 (68%), Positives = 77/97 (79%), Gaps = 11/97 (11%)
Query: 12 GKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTE 61
K EEE FNTGPLS+L +VKN+ Q +L RV+AFDRHCNMVLENV+EMWTE
Sbjct: 69 AKVEEELFNTGPLSILTQAVKNSDQVLINCRNNRKILARVKAFDRHCNMVLENVKEMWTE 128
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
P+TGKG +KA PVNKDR+ISKMFLRGDSVI+VL+NP
Sbjct: 129 TPRTGKG-RKAKPVNKDRYISKMFLRGDSVILVLKNP 164
>gi|159480556|ref|XP_001698348.1| small nuclear ribonucleoprotein Sm D2 [Chlamydomonas reinhardtii]
gi|158282088|gb|EDP07841.1| small nuclear ribonucleoprotein Sm D2 [Chlamydomonas reinhardtii]
Length = 110
Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 64/91 (70%), Positives = 74/91 (81%), Gaps = 10/91 (10%)
Query: 19 FNTGPLSVLMMSVK----------NNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
+ TGPLSVL SVK NN +LL RV+AFDRHCNM+LENV+EMWTE+PKTGKG
Sbjct: 20 YRTGPLSVLTQSVKTNGQVLINCRNNHKLLARVKAFDRHCNMILENVKEMWTEIPKTGKG 79
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
+K + PVNKDRF+SKMFLRGDSVI+VLRNPK
Sbjct: 80 QKASRPVNKDRFVSKMFLRGDSVIMVLRNPK 110
>gi|260835152|ref|XP_002612573.1| hypothetical protein BRAFLDRAFT_265042 [Branchiostoma floridae]
gi|229297951|gb|EEN68582.1| hypothetical protein BRAFLDRAFT_265042 [Branchiostoma floridae]
Length = 116
Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/97 (74%), Positives = 81/97 (83%), Gaps = 10/97 (10%)
Query: 12 GKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTE 61
+ E+EEFNTGPLSVL SVKNNTQ LL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 14 AQREQEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTE 73
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
+PKTGKGKKK+ P+NKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 74 VPKTGKGKKKSKPINKDRYISKMFLRGDSVILVLRNP 110
>gi|242024699|ref|XP_002432764.1| small nuclear ribonucleoprotein sm D2, putative [Pediculus humanus
corporis]
gi|212518249|gb|EEB20026.1| small nuclear ribonucleoprotein sm D2, putative [Pediculus humanus
corporis]
Length = 110
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/97 (77%), Positives = 81/97 (83%), Gaps = 10/97 (10%)
Query: 12 GKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTE 61
K EEEEF+TGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE
Sbjct: 7 SKREEEEFSTGPLSVLSQSVKNNTQVLINCRNNRKLLGRVKAFDRHCNMVLENVKEMWTE 66
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
LP++GKGKKKA VNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 67 LPRSGKGKKKAKSVNKDRFISKMFLRGDSVILVLRNP 103
>gi|405978739|gb|EKC43103.1| Putative small nuclear ribonucleoprotein Sm D2 [Crassostrea gigas]
Length = 119
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/97 (74%), Positives = 81/97 (83%), Gaps = 10/97 (10%)
Query: 12 GKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTE 61
+ E+EEFNTGPLSVL SVKNNTQ LL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 18 SQREQEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTE 77
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
+PKTGKGKKK+ PVNKDR+ISKMFLRGDSVI++LRNP
Sbjct: 78 VPKTGKGKKKSKPVNKDRYISKMFLRGDSVILILRNP 114
>gi|357495277|ref|XP_003617927.1| Small nuclear ribonucleoprotein-like protein [Medicago
truncatula]
gi|355519262|gb|AET00886.1| Small nuclear ribonucleoprotein-like protein [Medicago
truncatula]
Length = 81
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/73 (84%), Positives = 69/73 (94%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
++++ +NN +LLGRV AFDRHCNMVLENVREMWTE+PKTGKGKKKA PVNKDRFISKMFL
Sbjct: 9 VLINCRNNKKLLGRVMAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFL 68
Query: 87 RGDSVIIVLRNPK 99
RGDSVIIVLRNPK
Sbjct: 69 RGDSVIIVLRNPK 81
>gi|134948671|ref|NP_001077096.1| small nuclear ribonucleoprotein sm d2 [Bombyx mori]
gi|117606770|gb|ABK42005.1| small nuclear ribonucleoprotein sm d2 [Bombyx mori]
Length = 119
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/90 (74%), Positives = 74/90 (82%), Gaps = 11/90 (12%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
F+TGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+P+TGKG
Sbjct: 24 FSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KK VNKD+FISKMFLRGDSVI+VLRNP
Sbjct: 84 -KKGKAVNKDKFISKMFLRGDSVILVLRNP 112
>gi|302839956|ref|XP_002951534.1| hypothetical protein VOLCADRAFT_81522 [Volvox carteri f.
nagariensis]
gi|300263143|gb|EFJ47345.1| hypothetical protein VOLCADRAFT_81522 [Volvox carteri f.
nagariensis]
Length = 110
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/91 (70%), Positives = 73/91 (80%), Gaps = 10/91 (10%)
Query: 19 FNTGPLSVLMMSVK----------NNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
+ TGPLSVL SVK NN +LL RV+AFDRHCNM+LENV+EMWTE+PKTGKG
Sbjct: 20 YRTGPLSVLTQSVKTNGQVLINCRNNHKLLARVKAFDRHCNMILENVKEMWTEIPKTGKG 79
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
K + PVNKDRF+SKMFLRGDSVI+VLRNPK
Sbjct: 80 SKGSRPVNKDRFVSKMFLRGDSVIMVLRNPK 110
>gi|168017146|ref|XP_001761109.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687795|gb|EDQ74176.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 99
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/97 (82%), Positives = 84/97 (86%), Gaps = 10/97 (10%)
Query: 13 KTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTEL 62
KTEEEEF+TGPLSVL MSVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+
Sbjct: 3 KTEEEEFSTGPLSVLTMSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEV 62
Query: 63 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
PK GKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 63 PKAGKGKKKAKPVNKDRFISKMFLRGDSVIIVLRNPK 99
>gi|357627860|gb|EHJ77403.1| small nuclear ribonucleoprotein sm d2 [Danaus plexippus]
Length = 109
Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/90 (74%), Positives = 74/90 (82%), Gaps = 11/90 (12%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
F+TGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+P+TGKG
Sbjct: 14 FSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTGKG 73
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KK VNKD+FISKMFLRGDSVI+VLRNP
Sbjct: 74 -KKGKAVNKDKFISKMFLRGDSVILVLRNP 102
>gi|156361110|ref|XP_001625363.1| predicted protein [Nematostella vectensis]
gi|156212193|gb|EDO33263.1| predicted protein [Nematostella vectensis]
Length = 119
Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/97 (74%), Positives = 80/97 (82%), Gaps = 10/97 (10%)
Query: 12 GKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTE 61
+ E+EEFNTGPLSVL SVKNNTQ LL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 18 AQREQEEFNTGPLSVLTQSVKNNTQVLINCRNNRKLLARVKAFDRHCNMVLENVKEMWTE 77
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
PK+GKGKKKA PVNKDR+I+KMFLRGDSVI+VLRNP
Sbjct: 78 TPKSGKGKKKAKPVNKDRYIAKMFLRGDSVILVLRNP 114
>gi|391344476|ref|XP_003746524.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Metaseiulus occidentalis]
Length = 116
Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/90 (74%), Positives = 71/90 (78%), Gaps = 11/90 (12%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
F TGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE P+T KG
Sbjct: 23 FETGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTETPRTAKG 82
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
+K PVNKDRFI KMFLRGDSVIIVLRNP
Sbjct: 83 -RKGQPVNKDRFIPKMFLRGDSVIIVLRNP 111
>gi|303274376|ref|XP_003056509.1| small nuclear ribonucleoprotein sm D2 [Micromonas pusilla CCMP1545]
gi|226462593|gb|EEH59885.1| small nuclear ribonucleoprotein sm D2 [Micromonas pusilla CCMP1545]
Length = 103
Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/97 (64%), Positives = 77/97 (79%), Gaps = 10/97 (10%)
Query: 13 KTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTEL 62
K E++EF+TGPLSVL SVK N+Q LLG+++AFDRHCNMVLENV+E W E+
Sbjct: 7 KFEDQEFDTGPLSVLTQSVKTNSQVLINCRNNRKLLGQIKAFDRHCNMVLENVKEYWLEV 66
Query: 63 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
KTGKG K+ P++K+RFISKMFLRGDSVI+VLRNPK
Sbjct: 67 SKTGKGVKRTTPIHKERFISKMFLRGDSVILVLRNPK 103
>gi|126697412|gb|ABO26663.1| small nuclear ribonucleoprotein D2-like protein [Haliotis discus
discus]
Length = 119
Score = 130 bits (327), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 72/94 (76%), Positives = 79/94 (84%), Gaps = 10/94 (10%)
Query: 15 EEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPK 64
E+EEFNT PLSVL SVKNNTQ LL RV+AFDRHCNMVLENV+EMWTE+PK
Sbjct: 21 EQEEFNTEPLSVLTQSVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPK 80
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
TGKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 81 TGKGKKKSKPVNKDRYISKMFLRGDSVILVLRNP 114
>gi|428173912|gb|EKX42811.1| hypothetical protein GUITHDRAFT_153446 [Guillardia theta
CCMP2712]
Length = 99
Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/93 (67%), Positives = 74/93 (79%), Gaps = 10/93 (10%)
Query: 16 EEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKT 65
+E+F+ GPLS+L SV+ N Q LL RV+AFDRHCNMVLENV+EMWTE P+T
Sbjct: 6 KEDFSAGPLSLLADSVRKNCQVLINCRNNRKLLARVKAFDRHCNMVLENVKEMWTEAPRT 65
Query: 66 GKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
GKGK K+ PVNKDRFISKMFLRGDSVI+VL+NP
Sbjct: 66 GKGKAKSKPVNKDRFISKMFLRGDSVIMVLKNP 98
>gi|348676937|gb|EGZ16754.1| hypothetical protein PHYSODRAFT_559644 [Phytophthora sojae]
Length = 123
Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/96 (73%), Positives = 79/96 (82%), Gaps = 10/96 (10%)
Query: 13 KTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTEL 62
+ +EEEF GPLSVLM SVKNN+Q LL RV+AFDRHCNMVLENV+EMWTE+
Sbjct: 26 QEDEEEFQKGPLSVLMHSVKNNSQVLINVRNNHKLLARVKAFDRHCNMVLENVKEMWTEV 85
Query: 63 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
PK+GKGKK A PVNKDRF+SKMFLRGDSVIIVLRNP
Sbjct: 86 PKSGKGKKAAKPVNKDRFVSKMFLRGDSVIIVLRNP 121
>gi|168044533|ref|XP_001774735.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673890|gb|EDQ60406.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 103
Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/91 (82%), Positives = 79/91 (86%), Gaps = 10/91 (10%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
F+TGPLSVL MSVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PKTGKG
Sbjct: 13 FSTGPLSVLTMSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKG 72
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
KKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 73 KKKAKPVNKDRFISKMFLRGDSVIIVLRNPK 103
>gi|384500116|gb|EIE90607.1| small nuclear ribonucleoprotein Sm D2 [Rhizopus delemar RA 99-880]
Length = 113
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/89 (71%), Positives = 71/89 (79%), Gaps = 11/89 (12%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNN Q LL RV+AFDRHCNMVLENV+EMWTE P+TGKG
Sbjct: 24 FNTGPLSVLQQSVKNNNQILISCRNNHKLLARVKAFDRHCNMVLENVKEMWTETPRTGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRN 97
KA PVNKDRF+SKMFLRGD+V++VLRN
Sbjct: 84 -SKAKPVNKDRFVSKMFLRGDTVVLVLRN 111
>gi|328768108|gb|EGF78155.1| hypothetical protein BATDEDRAFT_91018 [Batrachochytrium
dendrobatidis JAM81]
Length = 109
Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 69/88 (78%), Gaps = 10/88 (11%)
Query: 15 EEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPK 64
EE EF TGPLS+L +VKN++Q LL RV+AFDRHCNMVLENV+EMWTE P+
Sbjct: 21 EEAEFQTGPLSILTQAVKNSSQVLVVCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPQ 80
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVI 92
TGKG KKA PVNKDRFISKMFLRGDS I
Sbjct: 81 TGKGIKKAKPVNKDRFISKMFLRGDSGI 108
>gi|328867188|gb|EGG15571.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 110
Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 73/101 (72%), Positives = 81/101 (80%), Gaps = 10/101 (9%)
Query: 8 DTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVRE 57
D + + +EF TGPLS+LM SVKNNTQ LL RVRAFDRHCNMVLENV+E
Sbjct: 7 DQEEDRDDLKEFETGPLSILMESVKNNTQILINVRNNKKLLARVRAFDRHCNMVLENVKE 66
Query: 58 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
MWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVI+VL+NP
Sbjct: 67 MWTEVPKTGKGKKKAKPVNKDRFISKMFLRGDSVILVLKNP 107
>gi|291224549|ref|XP_002732266.1| PREDICTED: Small Nuclear Ribonucleoprotein family member
(snr-4)-like [Saccoglossus kowalevskii]
Length = 123
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/90 (78%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PKTGKG
Sbjct: 29 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKG 88
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 89 KKKSKPVNKDRYISKMFLRGDSVILVLRNP 118
>gi|22203734|gb|AAM94277.1| small nuclear ribonucleoprotein D2-like protein [Azumapecten
farreri]
Length = 119
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 76/90 (84%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LL RV+AFDRHCNMVLENV+EMWTE+PKTGKG
Sbjct: 25 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPKTGKG 84
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 85 KKKSKPVNKDRYISKMFLRGDSVILVLRNP 114
>gi|313226859|emb|CBY22004.1| unnamed protein product [Oikopleura dioica]
gi|313242576|emb|CBY34708.1| unnamed protein product [Oikopleura dioica]
Length = 118
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/90 (71%), Positives = 70/90 (77%), Gaps = 11/90 (12%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
F TGPLSVL SV+NNTQ L+GRV+AFDRHCNMVLENV+EMW E PKT KG
Sbjct: 25 FQTGPLSVLTESVRNNTQVLINCRNNRKLMGRVKAFDRHCNMVLENVKEMWVERPKTAKG 84
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
K PVN+DRFISKMFLRGDSVIIVL+NP
Sbjct: 85 -KGGQPVNRDRFISKMFLRGDSVIIVLKNP 113
>gi|225712108|gb|ACO11900.1| Probable small nuclear ribonucleoprotein Sm D2 [Lepeophtheirus
salmonis]
Length = 115
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/90 (78%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLE+V+EMWTE+PKTGKG
Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLESVKEMWTEMPKTGKG 82
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKKA PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 83 KKKAKPVNKDRYISKMFLRGDSVILVLRNP 112
>gi|134108164|ref|XP_777280.1| hypothetical protein CNBB2650 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259967|gb|EAL22633.1| hypothetical protein CNBB2650 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 165
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/93 (69%), Positives = 72/93 (77%), Gaps = 14/93 (15%)
Query: 15 EEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPK 64
EE E + GPLSVL SV+N++Q LL RV+AFDRHCNMVLENV+EMWTE PK
Sbjct: 75 EEYEISQGPLSVLQQSVRNSSQVLISLRNNKKLLARVKAFDRHCNMVLENVKEMWTETPK 134
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 97
GKGKK PVNKDRFISKMFLRGDSVI+VLRN
Sbjct: 135 -GKGKK---PVNKDRFISKMFLRGDSVILVLRN 163
>gi|313214959|emb|CBY41164.1| unnamed protein product [Oikopleura dioica]
Length = 118
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/90 (71%), Positives = 70/90 (77%), Gaps = 11/90 (12%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
F TGPLSVL SV+NNTQ L+GRV+AFDRHCNMVLENV+EMW E PKT KG
Sbjct: 25 FQTGPLSVLTESVRNNTQVLINCRNNRKLMGRVKAFDRHCNMVLENVKEMWVERPKTSKG 84
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
K PVN+DRFISKMFLRGDSVIIVL+NP
Sbjct: 85 -KGGQPVNRDRFISKMFLRGDSVIIVLKNP 113
>gi|325183558|emb|CCA18019.1| hypothetical protein SORBIDRAFT_06g022770 [Albugo laibachii Nc14]
Length = 110
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/93 (69%), Positives = 76/93 (81%), Gaps = 10/93 (10%)
Query: 16 EEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKT 65
EE+F GPLS+LM SVKNN+Q LL RV+AFDRHCNMVLENV+EMWTE+PK+
Sbjct: 16 EEDFQKGPLSILMHSVKNNSQVLINVRNNHKLLARVKAFDRHCNMVLENVKEMWTEVPKS 75
Query: 66 GKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
GKGKK PVNKDRF+SK+FLRGDSV++VLRNP
Sbjct: 76 GKGKKSGKPVNKDRFVSKLFLRGDSVVLVLRNP 108
>gi|339252990|ref|XP_003371718.1| small nuclear ribonucleoprotein Sm D2 [Trichinella spiralis]
gi|316967993|gb|EFV52337.1| small nuclear ribonucleoprotein Sm D2 [Trichinella spiralis]
Length = 118
Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/98 (58%), Positives = 74/98 (75%), Gaps = 10/98 (10%)
Query: 12 GKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTE 61
+ E E+F GPLSVL +V+ N+Q L+ RV+AFDRHCNM+LENV+EMWTE
Sbjct: 12 AQKETEDFEVGPLSVLTHAVRTNSQVLIDCRHNRKLIARVKAFDRHCNMILENVKEMWTE 71
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
+P+ GKG+K+ VNKDRFISKMFLRGD VI+V++NP+
Sbjct: 72 IPRVGKGQKRGNAVNKDRFISKMFLRGDIVILVMKNPQ 109
>gi|91090234|ref|XP_968776.1| PREDICTED: similar to CG1249 CG1249-PA [Tribolium castaneum]
gi|270013456|gb|EFA09904.1| hypothetical protein TcasGA2_TC012054 [Tribolium castaneum]
Length = 118
Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 76/90 (84%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCN+VLENV+EMWTELP+ GKG
Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNIVLENVKEMWTELPRPGKG 82
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKKA PVNKDRFISKMFLRGD+VIIV+RNP
Sbjct: 83 KKKAKPVNKDRFISKMFLRGDAVIIVVRNP 112
>gi|256085048|ref|XP_002578736.1| small nuclear ribonucleoprotein Sm D2 [Schistosoma mansoni]
gi|360045476|emb|CCD83024.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
mansoni]
Length = 124
Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 78/94 (82%), Gaps = 10/94 (10%)
Query: 15 EEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPK 64
E++EF TGPLSVL +VKNNTQ LL RV+AFDRHCNMVLENV+EMWTE+P+
Sbjct: 21 EKQEFETGPLSVLTNAVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPR 80
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
GKGKKK+ PVNKDRFISK+FLRGDSVI+VLRNP
Sbjct: 81 PGKGKKKSKPVNKDRFISKLFLRGDSVILVLRNP 114
>gi|58263220|ref|XP_569020.1| pre-mRNA splicing factor [Cryptococcus neoformans var. neoformans
JEC21]
gi|321249059|ref|XP_003191330.1| pre-mRNA splicing factor [Cryptococcus gattii WM276]
gi|57223670|gb|AAW41713.1| pre-mRNA splicing factor, putative [Cryptococcus neoformans var.
neoformans JEC21]
gi|317457797|gb|ADV19543.1| Pre-mRNA splicing factor, putative [Cryptococcus gattii WM276]
gi|405118541|gb|AFR93315.1| pre-mRNA splicing factor [Cryptococcus neoformans var. grubii H99]
Length = 111
Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 65/93 (69%), Positives = 72/93 (77%), Gaps = 14/93 (15%)
Query: 15 EEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPK 64
EE E + GPLSVL SV+N++Q LL RV+AFDRHCNMVLENV+EMWTE PK
Sbjct: 21 EEYEISQGPLSVLQQSVRNSSQVLISLRNNKKLLARVKAFDRHCNMVLENVKEMWTETPK 80
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 97
GKGKK PVNKDRFISKMFLRGDSVI+VLRN
Sbjct: 81 -GKGKK---PVNKDRFISKMFLRGDSVILVLRN 109
>gi|255564180|ref|XP_002523087.1| small nuclear ribonucleoprotein sm d2, putative [Ricinus communis]
gi|223537649|gb|EEF39272.1| small nuclear ribonucleoprotein sm d2, putative [Ricinus communis]
Length = 169
Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 62/85 (72%), Positives = 69/85 (81%), Gaps = 9/85 (10%)
Query: 24 LSVLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTEL---------PKTGKGKKKALP 74
L + ++ +NN +LLGRVR FDRHCNMVLENVREMWTE+ PKTGKGKKKA P
Sbjct: 85 LVLCSINCRNNKKLLGRVRTFDRHCNMVLENVREMWTEVYNYTLFIWVPKTGKGKKKAQP 144
Query: 75 VNKDRFISKMFLRGDSVIIVLRNPK 99
VNKDRFISKMFLRGDSVIIVLRNP+
Sbjct: 145 VNKDRFISKMFLRGDSVIIVLRNPE 169
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 4/37 (10%)
Query: 13 KTEEEEFNTGPLSVLMMSVKNNTQLLGRVRAFDRHCN 49
K + EEF+TG LSVLMMSV+NNT+L +++ CN
Sbjct: 20 KNKSEEFSTGSLSVLMMSVRNNTEL----GSYESGCN 52
>gi|332376785|gb|AEE63532.1| unknown [Dendroctonus ponderosae]
Length = 117
Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 69/90 (76%), Positives = 76/90 (84%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTELP+ GKG
Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRPGKG 82
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKKA PVNKDRFISKMFLRGD+VI+++RNP
Sbjct: 83 KKKAKPVNKDRFISKMFLRGDAVIMIVRNP 112
>gi|226470754|emb|CAX76810.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470756|emb|CAX76811.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470758|emb|CAX76812.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470760|emb|CAX76813.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470762|emb|CAX76814.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470764|emb|CAX76815.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470766|emb|CAX76816.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470768|emb|CAX76817.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226473196|emb|CAX71284.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226473198|emb|CAX71285.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226473200|emb|CAX71286.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226473202|emb|CAX71287.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
Length = 124
Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 78/94 (82%), Gaps = 10/94 (10%)
Query: 15 EEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPK 64
E++EF TGPLSVL +VKNNTQ LL RV+AFDRHCNMVLENV+EMWTE+P+
Sbjct: 21 EKQEFETGPLSVLTNAVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPR 80
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
GKGKKK+ PVNKDRFISK+FLRGDSVI+VLRNP
Sbjct: 81 PGKGKKKSKPVNKDRFISKLFLRGDSVILVLRNP 114
>gi|330793131|ref|XP_003284639.1| hypothetical protein DICPUDRAFT_86347 [Dictyostelium purpureum]
gi|325085438|gb|EGC38845.1| hypothetical protein DICPUDRAFT_86347 [Dictyostelium purpureum]
Length = 116
Score = 124 bits (310), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 71/108 (65%), Positives = 81/108 (75%), Gaps = 10/108 (9%)
Query: 1 MSRAMDEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNM 50
MSR DE + ++ GPLS+LM SV NNTQ LLGRVRAFDRHCNM
Sbjct: 1 MSRMNDEVMEDKPEDINDYEKGPLSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNM 60
Query: 51 VLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
VLENV+E+WTE+PKT KGKKKA P+NKDRFISKMFLRGDSVI+VL+NP
Sbjct: 61 VLENVKEIWTEVPKTAKGKKKAKPINKDRFISKMFLRGDSVILVLKNP 108
>gi|167516090|ref|XP_001742386.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779010|gb|EDQ92624.1| predicted protein [Monosiga brevicollis MX1]
Length = 123
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/96 (67%), Positives = 76/96 (79%), Gaps = 10/96 (10%)
Query: 13 KTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTEL 62
K E++EF +GP+SVL SVK+NTQ LL RV+AFDRHCNMVLE V+EMWTE
Sbjct: 23 KIEQQEFESGPMSVLTQSVKSNTQVLIFCRNNKKLLARVKAFDRHCNMVLEQVKEMWTET 82
Query: 63 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
PK GKG+KK P+NKDRFISKMFLRGD+VI+VLRNP
Sbjct: 83 PKAGKGQKKKKPINKDRFISKMFLRGDTVILVLRNP 118
>gi|225711330|gb|ACO11511.1| Probable small nuclear ribonucleoprotein Sm D2 [Caligus
rogercresseyi]
Length = 115
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/90 (76%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQLL----------GRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ+L GRV+AFDRHCNMVLE+V+EMWTE+PKTGKG
Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKPLGRVKAFDRHCNMVLESVKEMWTEMPKTGKG 82
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKKA PVNKDR+ISKMFLRGDS+I+VLRNP
Sbjct: 83 KKKAKPVNKDRYISKMFLRGDSIILVLRNP 112
>gi|358342021|dbj|GAA49579.1| small nuclear ribonucleoprotein D2 [Clonorchis sinensis]
Length = 124
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/94 (71%), Positives = 78/94 (82%), Gaps = 10/94 (10%)
Query: 15 EEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPK 64
E++EF TGPLSVL +VKNNTQ LL RV+AFDRHCNMVLENV+EMWTE+P+
Sbjct: 22 EKQEFETGPLSVLTNAVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPR 81
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
GKGKKK+ PVNKDR+ISK+FLRGDSVI+VLRNP
Sbjct: 82 PGKGKKKSKPVNKDRYISKLFLRGDSVILVLRNP 115
>gi|402217994|gb|EJT98072.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 111
Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/93 (69%), Positives = 72/93 (77%), Gaps = 14/93 (15%)
Query: 15 EEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPK 64
EE E + GPLSVL SV+N+TQ LL RV+AFDRH NMVLENV+EMWTE+PK
Sbjct: 21 EEYEISQGPLSVLQQSVRNHTQILISLRNNRKLLARVKAFDRHTNMVLENVKEMWTEVPK 80
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 97
GKGKK PVNKDRFISKMFLRGDSVI+VLRN
Sbjct: 81 -GKGKK---PVNKDRFISKMFLRGDSVILVLRN 109
>gi|406866515|gb|EKD19555.1| LSM domain-containing protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 106
Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/91 (67%), Positives = 70/91 (76%), Gaps = 11/91 (12%)
Query: 15 EEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
EE EF +GPLS+L ++S +NN +LL RV+AFDRHCNMVLENV+EMWTE PK
Sbjct: 15 EEHEFTSGPLSILQTAVRSHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEAPK 74
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
T G KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 75 TS-GGKKGRPVNKDRFISKMFLRGDSVILVL 104
>gi|309264759|ref|XP_003086355.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Mus
musculus]
Length = 118
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/90 (74%), Positives = 75/90 (83%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+ KG
Sbjct: 24 FNTGPLSVLSQSVKNNTQVLINCRNKKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSSKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKD +ISK+FLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDCYISKIFLRGDSVIVVLRNP 113
>gi|195061660|ref|XP_001996040.1| GH14279 [Drosophila grimshawi]
gi|193891832|gb|EDV90698.1| GH14279 [Drosophila grimshawi]
Length = 128
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/90 (80%), Positives = 76/90 (84%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTELP+TGKG
Sbjct: 32 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 91
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 92 KKKVKPVNKDRFISKMFLRGDSVILVLRNP 121
>gi|63501063|ref|XP_619909.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Mus
musculus]
Length = 118
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/90 (74%), Positives = 75/90 (83%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+ KG
Sbjct: 24 FNTGPLSVLSQSVKNNTQVLINCRNKKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSSKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKD +ISK+FLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDCYISKIFLRGDSVIVVLRNP 113
>gi|310794394|gb|EFQ29855.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 118
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/94 (62%), Positives = 71/94 (75%), Gaps = 11/94 (11%)
Query: 12 GKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE 61
+ EE EF+ GPLS+L ++S++NN +LL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 24 AQLEEHEFSAGPLSILQTAVRSHTQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTE 83
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
P+ G KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 84 TPRLANG-KKGRPVNKDRFISKMFLRGDSVILVL 116
>gi|148692587|gb|EDL24534.1| mCG49049 [Mus musculus]
Length = 118
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/96 (76%), Positives = 80/96 (83%), Gaps = 10/96 (10%)
Query: 13 KTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTEL 62
K EEEFNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+
Sbjct: 18 KRAEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEV 77
Query: 63 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
PK+GKGKKK+ PVNKDR+ISKMFLRGD VI+VLRNP
Sbjct: 78 PKSGKGKKKSKPVNKDRYISKMFLRGDLVIVVLRNP 113
>gi|380476129|emb|CCF44882.1| small nuclear ribonucleoprotein Sm D2 [Colletotrichum higginsianum]
Length = 118
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/94 (62%), Positives = 71/94 (75%), Gaps = 11/94 (11%)
Query: 12 GKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE 61
+ EE EF+ GPLS+L ++S++NN +LL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 24 AQLEEHEFSAGPLSILQTAVRSHTQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTE 83
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
P+ G KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 84 TPRLANG-KKGRPVNKDRFISKMFLRGDSVILVL 116
>gi|342880846|gb|EGU81864.1| hypothetical protein FOXB_07659 [Fusarium oxysporum Fo5176]
Length = 118
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/94 (62%), Positives = 71/94 (75%), Gaps = 11/94 (11%)
Query: 12 GKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE 61
+ EE EF+ GPLS+L ++S++NN +LL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 24 AQLEEHEFSAGPLSILQTAVRSHVQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTE 83
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
P+ G KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 84 TPRLANG-KKGRPVNKDRFISKMFLRGDSVILVL 116
>gi|389644410|ref|XP_003719837.1| small nuclear ribonucleoprotein Sm D2 [Magnaporthe oryzae 70-15]
gi|351639606|gb|EHA47470.1| small nuclear ribonucleoprotein Sm D2 [Magnaporthe oryzae 70-15]
gi|440470057|gb|ELQ39146.1| small nuclear ribonucleoprotein Sm D2 [Magnaporthe oryzae Y34]
gi|440490054|gb|ELQ69649.1| small nuclear ribonucleoprotein Sm D2 [Magnaporthe oryzae P131]
Length = 117
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/94 (62%), Positives = 71/94 (75%), Gaps = 11/94 (11%)
Query: 12 GKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE 61
+ EE EF+ GPLS+L ++S++NN +LL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 23 AQLEEHEFSAGPLSILQTAVRSHTQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTE 82
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
P+ G KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 83 TPRLASG-KKGRPVNKDRFISKMFLRGDSVILVL 115
>gi|402078814|gb|EJT74079.1| small nuclear ribonucleoprotein Sm D2 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 117
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/94 (62%), Positives = 71/94 (75%), Gaps = 11/94 (11%)
Query: 12 GKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE 61
+ EE EF+ GPLS+L ++S++NN +LL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 23 AQLEEHEFSAGPLSILQTAVRSHAQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTE 82
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
P+ G KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 83 TPRLANG-KKGRPVNKDRFISKMFLRGDSVILVL 115
>gi|195144664|ref|XP_002013316.1| GL23477 [Drosophila persimilis]
gi|194102259|gb|EDW24302.1| GL23477 [Drosophila persimilis]
Length = 124
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/90 (80%), Positives = 76/90 (84%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTELP+TGKG
Sbjct: 28 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 87
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 88 KKKVKPVNKDRFISKMFLRGDSVILVLRNP 117
>gi|119115655|ref|XP_318388.2| AGAP003936-PA [Anopheles gambiae str. PEST]
gi|116119487|gb|EAA13684.2| AGAP003936-PA [Anopheles gambiae str. PEST]
Length = 119
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/91 (78%), Positives = 77/91 (84%), Gaps = 10/91 (10%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+P+TGKG
Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEIPRTGKG 82
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
KKK PVNKDRFISKMFLRGDSVI+VLRNP+
Sbjct: 83 KKKVKPVNKDRFISKMFLRGDSVILVLRNPQ 113
>gi|195453024|ref|XP_002073604.1| GK14204 [Drosophila willistoni]
gi|194169689|gb|EDW84590.1| GK14204 [Drosophila willistoni]
Length = 120
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/90 (80%), Positives = 76/90 (84%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTELP+TGKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKVKPVNKDRFISKMFLRGDSVILVLRNP 113
>gi|21357623|ref|NP_649645.1| small ribonucleoprotein particle protein SmD2 [Drosophila
melanogaster]
gi|195109364|ref|XP_001999257.1| GI23171 [Drosophila mojavensis]
gi|195343951|ref|XP_002038554.1| GM10560 [Drosophila sechellia]
gi|195568713|ref|XP_002102358.1| GD19551 [Drosophila simulans]
gi|390178314|ref|XP_001358903.3| GA11659 [Drosophila pseudoobscura pseudoobscura]
gi|33112452|sp|Q9VI10.1|SMD2_DROME RecName: Full=Probable small nuclear ribonucleoprotein Sm D2;
Short=Sm-D2; AltName: Full=snRNP core protein D2
gi|7298930|gb|AAF54135.1| small ribonucleoprotein particle protein SmD2 [Drosophila
melanogaster]
gi|17861966|gb|AAL39460.1| LD03002p [Drosophila melanogaster]
gi|193915851|gb|EDW14718.1| GI23171 [Drosophila mojavensis]
gi|194133575|gb|EDW55091.1| GM10560 [Drosophila sechellia]
gi|194198285|gb|EDX11861.1| GD19551 [Drosophila simulans]
gi|220952896|gb|ACL88991.1| snRNP2-PA [synthetic construct]
gi|388859402|gb|EAL28046.3| GA11659 [Drosophila pseudoobscura pseudoobscura]
Length = 119
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/90 (80%), Positives = 76/90 (84%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTELP+TGKG
Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 82
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 83 KKKVKPVNKDRFISKMFLRGDSVILVLRNP 112
>gi|194899029|ref|XP_001979065.1| GG10522 [Drosophila erecta]
gi|190650768|gb|EDV48023.1| GG10522 [Drosophila erecta]
Length = 121
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/90 (80%), Positives = 76/90 (84%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTELP+TGKG
Sbjct: 25 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 84
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 85 KKKVKPVNKDRFISKMFLRGDSVILVLRNP 114
>gi|429861913|gb|ELA36576.1| small nuclear ribonucleoprotein sm d2 [Colletotrichum
gloeosporioides Nara gc5]
Length = 118
Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/94 (62%), Positives = 71/94 (75%), Gaps = 11/94 (11%)
Query: 12 GKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE 61
+ EE EF+ GPLS+L ++S++NN +LL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 24 AQLEEHEFSAGPLSILQTAVRSHTQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTE 83
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
P+ G KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 84 TPRLANG-KKGRPVNKDRFISKMFLRGDSVILVL 116
>gi|302909473|ref|XP_003050081.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256731018|gb|EEU44368.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 117
Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/94 (62%), Positives = 71/94 (75%), Gaps = 11/94 (11%)
Query: 12 GKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE 61
+ EE EF+ GPLS+L ++S++NN +LL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 23 AQLEEHEFSAGPLSILQTAVRSHIQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTE 82
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
P+ G KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 83 TPRLANG-KKGRPVNKDRFISKMFLRGDSVILVL 115
>gi|195502267|ref|XP_002098148.1| GE24106 [Drosophila yakuba]
gi|194184249|gb|EDW97860.1| GE24106 [Drosophila yakuba]
Length = 123
Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/90 (80%), Positives = 76/90 (84%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTELP+TGKG
Sbjct: 27 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 86
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 87 KKKVKPVNKDRFISKMFLRGDSVILVLRNP 116
>gi|400600870|gb|EJP68538.1| LSM domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 118
Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/94 (62%), Positives = 71/94 (75%), Gaps = 11/94 (11%)
Query: 12 GKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE 61
+ EE EF+ GPLS+L ++S++NN +LL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 24 AQLEEHEFSAGPLSILQTAVRSHVQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTE 83
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
P+ G KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 84 TPRLADG-KKGRPVNKDRFISKMFLRGDSVILVL 116
>gi|157124529|ref|XP_001654090.1| small nuclear ribonucleoprotein sm d2 [Aedes aegypti]
gi|108873936|gb|EAT38161.1| AAEL009914-PA [Aedes aegypti]
Length = 119
Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/91 (78%), Positives = 77/91 (84%), Gaps = 10/91 (10%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+P+TGKG
Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTGKG 82
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
KKK PVNKDRFISKMFLRGDSVI+VLRNP+
Sbjct: 83 KKKVKPVNKDRFISKMFLRGDSVILVLRNPQ 113
>gi|388583928|gb|EIM24229.1| Sm-like ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 111
Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/95 (68%), Positives = 72/95 (75%), Gaps = 14/95 (14%)
Query: 13 KTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTEL 62
+ EE E + GPLSVL SVKNNTQ LL RV+AFDRH NMVLENV+EMWTE
Sbjct: 19 QLEEFELSQGPLSVLQQSVKNNTQILVSLRNNRKLLARVKAFDRHSNMVLENVKEMWTET 78
Query: 63 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 97
PK GKGK+ P+NKDRFISKMFLRGDSVI+VLRN
Sbjct: 79 PK-GKGKQ---PINKDRFISKMFLRGDSVILVLRN 109
>gi|195399858|ref|XP_002058536.1| GJ14487 [Drosophila virilis]
gi|194142096|gb|EDW58504.1| GJ14487 [Drosophila virilis]
Length = 125
Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 72/90 (80%), Positives = 76/90 (84%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTELP+TGKG
Sbjct: 29 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 88
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 89 KKKVKPVNKDRFISKMFLRGDSVILVLRNP 118
>gi|395334237|gb|EJF66613.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 111
Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/93 (68%), Positives = 71/93 (76%), Gaps = 14/93 (15%)
Query: 15 EEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPK 64
EE E + GPLSVL +V+N+TQ LL RV+AFDRH NMVLENV+EMWTELPK
Sbjct: 21 EEHEISQGPLSVLQQAVRNHTQVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTELPK 80
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 97
GK KK PVNKDRFISKMFLRGDSVI+VLRN
Sbjct: 81 -GKNKK---PVNKDRFISKMFLRGDSVILVLRN 109
>gi|444732316|gb|ELW72617.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 199
Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/90 (74%), Positives = 74/90 (82%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGR +AFDRHCNM LENV+EMWTE+PK+GKG
Sbjct: 15 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRGKAFDRHCNMALENVKEMWTEVPKSGKG 74
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK PVNKDR+ISKMFLRGDSVI+VL+NP
Sbjct: 75 KKKFKPVNKDRYISKMFLRGDSVIVVLQNP 104
>gi|430813655|emb|CCJ29007.1| unnamed protein product [Pneumocystis jirovecii]
Length = 114
Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/95 (65%), Positives = 72/95 (75%), Gaps = 11/95 (11%)
Query: 13 KTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTEL 62
+ E EF+TGPLSVL ++S +NN +LL RV+AFDRH NMVLENV+EMWTE
Sbjct: 19 QLEAYEFDTGPLSVLQQAVRNHNQVLISCRNNRKLLARVKAFDRHSNMVLENVKEMWTET 78
Query: 63 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 97
P+ KG KK PVNKDRFISKMFLRGDSVI+VLRN
Sbjct: 79 PRNSKG-KKGKPVNKDRFISKMFLRGDSVILVLRN 112
>gi|198434899|ref|XP_002127683.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
Length = 119
Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/90 (75%), Positives = 73/90 (81%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
F TGPLSVL SVKNNTQ LL RV+AFDRHCNMVLENV+EMWTE PK+GKG
Sbjct: 24 FQTGPLSVLTDSVKNNTQVLINCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPKSGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK PVN+DRFISKMFLRGDSVIIVL+NP
Sbjct: 84 KKKQQPVNRDRFISKMFLRGDSVIIVLKNP 113
>gi|71021395|ref|XP_760928.1| hypothetical protein UM04781.1 [Ustilago maydis 521]
gi|46101003|gb|EAK86236.1| hypothetical protein UM04781.1 [Ustilago maydis 521]
gi|343426204|emb|CBQ69735.1| probable small nuclear ribonucleoprotein chain D2 [Sporisorium
reilianum SRZ2]
gi|443900125|dbj|GAC77452.1| 17 beta-hydroxysteroid dehydrogenase type 3 [Pseudozyma antarctica
T-34]
Length = 111
Score = 121 bits (303), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/93 (67%), Positives = 72/93 (77%), Gaps = 14/93 (15%)
Query: 15 EEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPK 64
E+ E + GPLSVL SV+N+TQ LL RV+AFDRH NMVLENV+EMWTE+PK
Sbjct: 21 EQYEISQGPLSVLQQSVRNHTQILIALRNNKKLLARVKAFDRHSNMVLENVKEMWTEVPK 80
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 97
GKGKK PVNKDRFISKMFLRGDSV++VLRN
Sbjct: 81 -GKGKK---PVNKDRFISKMFLRGDSVVLVLRN 109
>gi|388857230|emb|CCF49243.1| probable small nuclear ribonucleoprotein chain D2 [Ustilago hordei]
Length = 111
Score = 121 bits (303), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/93 (67%), Positives = 72/93 (77%), Gaps = 14/93 (15%)
Query: 15 EEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPK 64
E+ E + GPLSVL SV+N+TQ LL RV+AFDRH NMVLENV+EMWTE+PK
Sbjct: 21 EQYEISQGPLSVLQQSVRNHTQILIALRNNKKLLARVKAFDRHSNMVLENVKEMWTEVPK 80
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 97
GKGKK PVNKDRFISKMFLRGDSV++VLRN
Sbjct: 81 -GKGKK---PVNKDRFISKMFLRGDSVVLVLRN 109
>gi|112253319|gb|ABI14247.1| Sm-like protein [Pfiesteria piscicida]
gi|112253321|gb|ABI14248.1| small nuclear ribonucleoprotein D2-like protein [Pfiesteria
piscicida]
Length = 101
Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 62/95 (65%), Positives = 73/95 (76%), Gaps = 12/95 (12%)
Query: 15 EEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPK 64
E++ F+ GPLSVL VK+N+Q +L RV+AFDRH NMVLENVREMWTE+P
Sbjct: 9 EKDNFDVGPLSVLQKCVKDNSQVLINCRNNRKILARVKAFDRHSNMVLENVREMWTEVPH 68
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
GKKKA PVNKDRFI+K+FLRGDSVI+VLRNPK
Sbjct: 69 G--GKKKAKPVNKDRFITKLFLRGDSVILVLRNPK 101
>gi|46125281|ref|XP_387194.1| hypothetical protein FG07018.1 [Gibberella zeae PH-1]
Length = 155
Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/94 (62%), Positives = 71/94 (75%), Gaps = 11/94 (11%)
Query: 12 GKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE 61
+ EE EF+ GPLS+L ++S++NN +LL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 61 AQLEEYEFSAGPLSILQTAVRSHVQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTE 120
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
P+ G KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 121 TPRLA-GGKKGRPVNKDRFISKMFLRGDSVILVL 153
>gi|409083385|gb|EKM83742.1| hypothetical protein AGABI1DRAFT_124072 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 111
Score = 121 bits (303), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 63/95 (66%), Positives = 72/95 (75%), Gaps = 14/95 (14%)
Query: 13 KTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTEL 62
+ EE E + GPLSVL +V+N+TQ LL RV+AFDRH NMVLENV+EMWTE+
Sbjct: 19 QLEEHEISQGPLSVLQQAVRNHTQVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEI 78
Query: 63 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 97
PK GK KK PVNKDRFISKMFLRGDSVI+VLRN
Sbjct: 79 PK-GKNKK---PVNKDRFISKMFLRGDSVILVLRN 109
>gi|408397992|gb|EKJ77129.1| hypothetical protein FPSE_02773 [Fusarium pseudograminearum CS3096]
Length = 117
Score = 120 bits (302), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 59/94 (62%), Positives = 71/94 (75%), Gaps = 11/94 (11%)
Query: 12 GKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE 61
+ EE EF+ GPLS+L ++S++NN +LL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 23 AQLEEYEFSAGPLSILQTAVRSHVQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTE 82
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
P+ G KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 83 TPRLA-GGKKGRPVNKDRFISKMFLRGDSVILVL 115
>gi|340517487|gb|EGR47731.1| predicted protein [Trichoderma reesei QM6a]
gi|358388581|gb|EHK26174.1| hypothetical protein TRIVIDRAFT_35950 [Trichoderma virens Gv29-8]
Length = 117
Score = 120 bits (302), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 59/94 (62%), Positives = 71/94 (75%), Gaps = 11/94 (11%)
Query: 12 GKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTE 61
+ EE EF++GPLS+L +V+++TQ LL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 23 AQLEEYEFSSGPLSILQTAVRSHTQVLISIRSNRKLLARVKAFDRHCNMVLENVKEMWTE 82
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
P+ G KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 83 TPRLADG-KKGRPVNKDRFISKMFLRGDSVILVL 115
>gi|353237783|emb|CCA69748.1| probable small nuclear ribonucleoprotein chain D2 [Piriformospora
indica DSM 11827]
Length = 122
Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 63/93 (67%), Positives = 70/93 (75%), Gaps = 14/93 (15%)
Query: 15 EEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPK 64
EE E + GPLSVL SV+N+TQ LL RV+AFDRH NMVLENV+EMWTE P
Sbjct: 32 EEHEISQGPLSVLQQSVRNHTQILISLRNNRKLLARVKAFDRHSNMVLENVKEMWTETP- 90
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 97
+GK KK PVNKDRFISKMFLRGDSVI+VLRN
Sbjct: 91 SGKNKK---PVNKDRFISKMFLRGDSVILVLRN 120
>gi|66809065|ref|XP_638255.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|74853875|sp|Q54NC5.1|SMD2_DICDI RecName: Full=Probable small nuclear ribonucleoprotein Sm D2;
Short=Sm-D2; AltName: Full=snRNP core protein D2
gi|60466721|gb|EAL64772.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 112
Score = 120 bits (302), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 72/108 (66%), Positives = 84/108 (77%), Gaps = 14/108 (12%)
Query: 1 MSRAMDEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNM 50
MSR M+++T K ++ GPLS+LM SV NNTQ LLGRVRAFDRHCNM
Sbjct: 1 MSR-MNDETMEDKPDDS---NGPLSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNM 56
Query: 51 VLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
VLENV+E+WTE+PKT KGKKKA P+NKDRFISKMFLRGDSVI+VL+NP
Sbjct: 57 VLENVKEIWTEVPKTAKGKKKAKPINKDRFISKMFLRGDSVILVLKNP 104
>gi|358392303|gb|EHK41707.1| hypothetical protein TRIATDRAFT_30322 [Trichoderma atroviride IMI
206040]
Length = 117
Score = 120 bits (302), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 59/94 (62%), Positives = 71/94 (75%), Gaps = 11/94 (11%)
Query: 12 GKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTE 61
+ EE EF++GPLS+L +V+++TQ LL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 23 AQLEEYEFSSGPLSILQTAVRSHTQVLISIRSNRKLLARVKAFDRHCNMVLENVKEMWTE 82
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
P+ G KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 83 TPRLADG-KKGRPVNKDRFISKMFLRGDSVILVL 115
>gi|297598393|ref|NP_001045506.2| Os01g0967000 [Oryza sativa Japonica Group]
gi|255674111|dbj|BAF07420.2| Os01g0967000 [Oryza sativa Japonica Group]
Length = 226
Score = 120 bits (302), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 54/64 (84%), Positives = 61/64 (95%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
++++ +NN +LLGRVRAFD HCNMVLENVREMWTE+PKTGKGKKKALPVNKDRFISKMFL
Sbjct: 155 VLINCQNNKKLLGRVRAFDSHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFL 214
Query: 87 RGDS 90
RGDS
Sbjct: 215 RGDS 218
>gi|389739270|gb|EIM80464.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 111
Score = 120 bits (301), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 62/95 (65%), Positives = 72/95 (75%), Gaps = 14/95 (14%)
Query: 13 KTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTEL 62
+ EE E + GPLSVL +V+N+TQ LL RV+AFDRH NMVLENV+EMWTE+
Sbjct: 19 QLEEHEISQGPLSVLQQAVRNHTQVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEI 78
Query: 63 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 97
PK GK KK PVNKDRFISKMFLRGDSVI++LRN
Sbjct: 79 PK-GKNKK---PVNKDRFISKMFLRGDSVILILRN 109
>gi|323456239|gb|EGB12106.1| hypothetical protein AURANDRAFT_20164 [Aureococcus anophagefferens]
Length = 104
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/99 (66%), Positives = 81/99 (81%), Gaps = 10/99 (10%)
Query: 10 TGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMW 59
+G + E EF TGPLS+L+ S+K+N+Q LL RV+AFDRHCNMVLENV+E+W
Sbjct: 3 SGEPSVENEFATGPLSLLLHSMKSNSQVLINVRNNHKLLARVKAFDRHCNMVLENVKEVW 62
Query: 60 TELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
TE+PKTGKGKKK+ PVNK+R+ISKMFLRGDSVI+VLRNP
Sbjct: 63 TEIPKTGKGKKKSKPVNKERYISKMFLRGDSVILVLRNP 101
>gi|170030740|ref|XP_001843246.1| small nuclear ribonucleoprotein sm d2 [Culex quinquefasciatus]
gi|167867922|gb|EDS31305.1| small nuclear ribonucleoprotein sm d2 [Culex quinquefasciatus]
Length = 119
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/91 (76%), Positives = 76/91 (83%), Gaps = 10/91 (10%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+P+ GKG
Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRAGKG 82
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
KKK PVNKDRFISKMFLRGDSVI+VLRNP+
Sbjct: 83 KKKVKPVNKDRFISKMFLRGDSVILVLRNPQ 113
>gi|112143936|gb|ABI13177.1| putative small nuclear ribonucleoprotein d2 [Emiliania huxleyi]
Length = 110
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/91 (78%), Positives = 76/91 (83%), Gaps = 10/91 (10%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
F+TGPLSVL SVK+NTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK GKG
Sbjct: 20 FHTGPLSVLTQSVKSNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKKGKG 79
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
KKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 80 VKKAKPVNKDRFISKMFLRGDSVIIVLRNPK 110
>gi|331242627|ref|XP_003333959.1| small nuclear ribonucleoprotein Sm D2 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309312949|gb|EFP89540.1| small nuclear ribonucleoprotein Sm D2 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|328861040|gb|EGG10144.1| hypothetical protein MELLADRAFT_94522 [Melampsora larici-populina
98AG31]
Length = 111
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/103 (65%), Positives = 74/103 (71%), Gaps = 15/103 (14%)
Query: 5 MDEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLEN 54
+DE+ EE E TGPLSVL SVKN+TQ LL RV+AFDRH NMVL N
Sbjct: 12 LDEEKIRA-LEEHEIATGPLSVLQSSVKNHTQILIALRNNRKLLARVKAFDRHSNMVLVN 70
Query: 55 VREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 97
V+EMWTELPK GK KK PVNKDRFISKMFLRGDSVI+VLR+
Sbjct: 71 VKEMWTELPK-GKNKK---PVNKDRFISKMFLRGDSVILVLRH 109
>gi|320170085|gb|EFW46984.1| small nuclear ribonucleoprotein sm d2 [Capsaspora owczarzaki ATCC
30864]
Length = 118
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/97 (60%), Positives = 71/97 (73%), Gaps = 10/97 (10%)
Query: 12 GKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTE 61
+ E+EEF GPLSVL +V++N Q LL RV+AFDRH NM+LE+VRE WTE
Sbjct: 16 AQHEKEEFEKGPLSVLTKAVRSNAQVFINCRNNRKLLARVKAFDRHFNMILEDVREFWTE 75
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
+ GKGK K+ PVNKDRFISK+FLRGDSVII+L NP
Sbjct: 76 GTRAGKGKTKSKPVNKDRFISKLFLRGDSVIIILPNP 112
>gi|312078721|ref|XP_003141861.1| small Nuclear Ribonucleoprotein family member [Loa loa]
gi|307762971|gb|EFO22205.1| small nuclear ribonucleoprotein Sm D2 [Loa loa]
Length = 121
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/104 (72%), Positives = 82/104 (78%), Gaps = 11/104 (10%)
Query: 5 MDEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLEN 54
M ++ K E+EEFN GPLSVL SVKNN Q LLGRV+AFDRHCNMVLEN
Sbjct: 11 MTQEELAAK-EQEEFNVGPLSVLTQSVKNNAQVLINCRNNKKLLGRVKAFDRHCNMVLEN 69
Query: 55 VREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
V+EMWTELPKTGKGKKKA PV KDRFI+KMFLRGDSVIIVL+NP
Sbjct: 70 VKEMWTELPKTGKGKKKAKPVAKDRFITKMFLRGDSVIIVLKNP 113
>gi|294882885|ref|XP_002769869.1| Small nuclear ribonucleoprotein Sm D2, putative [Perkinsus marinus
ATCC 50983]
gi|239873682|gb|EER02587.1| Small nuclear ribonucleoprotein Sm D2, putative [Perkinsus marinus
ATCC 50983]
Length = 110
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/108 (58%), Positives = 79/108 (73%), Gaps = 19/108 (17%)
Query: 8 DTTGGKTEE------EEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMV 51
DTT +T + ++F TGPLS+L +++ +NN ++LGRV+AFDRH NMV
Sbjct: 3 DTTTNQTTDVDEVNRDKFETGPLSLLTKACEENSQVLINCRNNRKILGRVKAFDRHFNMV 62
Query: 52 LENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
LENVRE+WTE+PK G KK PVNKDRF+SKMFLRGDSVI+VLRNPK
Sbjct: 63 LENVRELWTEVPKGGSNKK---PVNKDRFVSKMFLRGDSVIMVLRNPK 107
>gi|403332734|gb|EJY65407.1| Small nuclear riboprotein Sm D2 [Oxytricha trifallax]
Length = 103
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/95 (65%), Positives = 73/95 (76%), Gaps = 11/95 (11%)
Query: 15 EEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPK 64
+E+ F+ GPLS+L +VK N+Q LLGRV+AFDRH NMVLENV EMWTE PK
Sbjct: 10 QEDTFHEGPLSLLTKAVKTNSQVLVNCRNNRKLLGRVKAFDRHMNMVLENVCEMWTETPK 69
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
KG KKA PVN++R+ISKMFLRGDSVIIV+RNPK
Sbjct: 70 PHKG-KKAHPVNRERYISKMFLRGDSVIIVIRNPK 103
>gi|170594601|ref|XP_001902052.1| Chain B, Crystal Structure Of The D1d2 Sub-Complex From The Human
Snrnp Core Domain. [Brugia malayi]
gi|158590996|gb|EDP29611.1| Chain B, Crystal Structure Of The D1d2 Sub-Complex From The Human
Snrnp Core Domain., putative [Brugia malayi]
Length = 121
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/104 (71%), Positives = 82/104 (78%), Gaps = 11/104 (10%)
Query: 5 MDEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLEN 54
M ++ K E+EEFN GPLSVL SVKNN Q LLGRV+AFDRHCNMVLEN
Sbjct: 11 MTQEELAAK-EQEEFNVGPLSVLTQSVKNNAQVLINCRNNKKLLGRVKAFDRHCNMVLEN 69
Query: 55 VREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
V+EMWTELPKTGKGKKKA PV KDRFI+KMFLRGDSVII+L+NP
Sbjct: 70 VKEMWTELPKTGKGKKKAKPVAKDRFITKMFLRGDSVIIILKNP 113
>gi|393247820|gb|EJD55327.1| Sm-like ribonucleo protein [Auricularia delicata TFB-10046 SS5]
Length = 111
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/95 (65%), Positives = 72/95 (75%), Gaps = 14/95 (14%)
Query: 13 KTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTEL 62
+ EE E + GPLSVL +V+N+TQ LL RV+AFDRH NMVLENV+EMWTE+
Sbjct: 19 QLEEHEISQGPLSVLQQAVRNHTQVLISLRNNKKLLARVKAFDRHTNMVLENVKEMWTEV 78
Query: 63 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 97
PK GK KK PVNKDRFISKMFLRGDSV++VLRN
Sbjct: 79 PK-GKNKK---PVNKDRFISKMFLRGDSVVLVLRN 109
>gi|298710498|emb|CBJ25562.1| small nuclear ribonucleoprotein D2-like protein [Ectocarpus
siliculosus]
Length = 82
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 66/72 (91%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
++++V+NN +LL R++AFDRHCNMVL +V+EMWTE PKTGKG+KKA VNKDR++SKMFL
Sbjct: 10 VLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGQKKAKAVNKDRYVSKMFL 69
Query: 87 RGDSVIIVLRNP 98
RGDSV++VLRNP
Sbjct: 70 RGDSVVLVLRNP 81
>gi|402587026|gb|EJW80962.1| small nuclear ribonucleoprotein Sm D2 [Wuchereria bancrofti]
Length = 111
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/104 (71%), Positives = 82/104 (78%), Gaps = 11/104 (10%)
Query: 5 MDEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLEN 54
M ++ K E+EEFN GPLSVL SVKNN Q LLGRV+AFDRHCNMVLEN
Sbjct: 1 MTQEELAAK-EQEEFNVGPLSVLTQSVKNNAQVLINCRNNKKLLGRVKAFDRHCNMVLEN 59
Query: 55 VREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
V+EMWTELPKTGKGKKKA PV KDRFI+KMFLRGDSVII+L+NP
Sbjct: 60 VKEMWTELPKTGKGKKKAKPVAKDRFITKMFLRGDSVIIILKNP 103
>gi|170084079|ref|XP_001873263.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650815|gb|EDR15055.1| predicted protein [Laccaria bicolor S238N-H82]
gi|336377064|gb|EGO05399.1| hypothetical protein SERLA73DRAFT_174539 [Serpula lacrymans var.
lacrymans S7.3]
gi|336390107|gb|EGO31250.1| hypothetical protein SERLADRAFT_456135 [Serpula lacrymans var.
lacrymans S7.9]
Length = 111
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/95 (64%), Positives = 73/95 (76%), Gaps = 14/95 (14%)
Query: 13 KTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTEL 62
+ EE E + GPLSVL ++S++NN +LL RV+AFDRH NMVLENV+EMWTE+
Sbjct: 19 QLEEHEISQGPLSVLQQAVRNHAQVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEV 78
Query: 63 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 97
PK GK KK PVNKDRFISKMFLRGDSVI++LRN
Sbjct: 79 PK-GKNKK---PVNKDRFISKMFLRGDSVILILRN 109
>gi|444732321|gb|ELW72622.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 170
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/90 (73%), Positives = 73/90 (81%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGR +AFDRHCNM LENV+EMWTE+PK+GKG
Sbjct: 15 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRGKAFDRHCNMALENVKEMWTEVPKSGKG 74
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK PVNKDR+ISK FLRGDSVI+VL+NP
Sbjct: 75 KKKFKPVNKDRYISKKFLRGDSVIVVLQNP 104
>gi|403280870|ref|XP_003931930.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Saimiri
boliviensis boliviensis]
Length = 212
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/89 (73%), Positives = 73/89 (82%), Gaps = 10/89 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+ KG
Sbjct: 25 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSSKG 84
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRN 97
KKK+ PVNKDR+ISKMFL G SVI+VL+N
Sbjct: 85 KKKSKPVNKDRYISKMFLCGGSVIVVLQN 113
>gi|322703763|gb|EFY95367.1| small nuclear ribonucleoprotein Sm D2 [Metarhizium anisopliae ARSEF
23]
Length = 121
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/94 (61%), Positives = 70/94 (74%), Gaps = 11/94 (11%)
Query: 12 GKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE 61
+ EE EF +GPLS+L ++S++NN +LL RV+AFDRHCNMVLENV+EMW E
Sbjct: 27 AELEEHEFTSGPLSILQTAVKSHTQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWDE 86
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
P+ G KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 87 TPRLADG-KKGRPVNKDRFISKMFLRGDSVILVL 119
>gi|407927523|gb|EKG20414.1| hypothetical protein MPH_02260 [Macrophomina phaseolina MS6]
Length = 118
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/107 (58%), Positives = 75/107 (70%), Gaps = 13/107 (12%)
Query: 1 MSRAMDEDTTG--GKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHC 48
MS+ D+ T + EE EF +GPLS+L ++S +NN +LL RV+AFDRHC
Sbjct: 11 MSKPRDQLTEYEIAQLEEHEFTSGPLSLLQTAVRSHTQVLISCRNNRKLLARVKAFDRHC 70
Query: 49 NMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
NMVLENV+EMWTE PK G K PVNKDRFISKMFLRGDSVI+VL
Sbjct: 71 NMVLENVKEMWTEKPKLANG-KPGRPVNKDRFISKMFLRGDSVILVL 116
>gi|440635668|gb|ELR05587.1| small nuclear ribonucleoprotein D2 [Geomyces destructans 20631-21]
Length = 118
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 69/91 (75%), Gaps = 11/91 (12%)
Query: 15 EEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
E+ EF +GPLS+L ++S +NN +LL RV+AFDRHCNMVLENV+EMWTE P+
Sbjct: 27 EQHEFTSGPLSILQTAVRSHSQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPR 86
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
G KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 87 LA-GGKKGRPVNKDRFISKMFLRGDSVILVL 116
>gi|392597247|gb|EIW86569.1| Sm-like ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 111
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/95 (64%), Positives = 73/95 (76%), Gaps = 14/95 (14%)
Query: 13 KTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTEL 62
+ EE E + GPLSVL ++S++NN +LL RV+AFDRH NMVLENV+EMWTE+
Sbjct: 19 QLEEHEISQGPLSVLQQAVRNHAQVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEV 78
Query: 63 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 97
PK GK KK PVNKDRFISKMFLRGDSVI++LRN
Sbjct: 79 PK-GKNKK---PVNKDRFISKMFLRGDSVILILRN 109
>gi|225714876|gb|ACO13284.1| Small nuclear ribonucleoprotein Sm D2 [Esox lucius]
Length = 121
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/96 (75%), Positives = 80/96 (83%), Gaps = 10/96 (10%)
Query: 13 KTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTEL 62
K EEE FNTGPLSVL SVK+NTQ LLGRV+AF RHCNMVLENV+EMWTE+
Sbjct: 18 KREEEGFNTGPLSVLTQSVKSNTQVLINCRNNKKLLGRVKAFGRHCNMVLENVKEMWTEV 77
Query: 63 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 78 PKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gi|242221237|ref|XP_002476371.1| predicted protein [Postia placenta Mad-698-R]
gi|220724376|gb|EED78423.1| predicted protein [Postia placenta Mad-698-R]
Length = 111
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/93 (66%), Positives = 71/93 (76%), Gaps = 14/93 (15%)
Query: 15 EEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPK 64
EE E + GPLSVL +V+N+TQ LL RV+AFDRH NMVLENV+EMWTE+PK
Sbjct: 21 EEFEISQGPLSVLQQAVRNHTQVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEMPK 80
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 97
GK KK PVNKDRFISKMFLRGDSVI++LRN
Sbjct: 81 -GKNKK---PVNKDRFISKMFLRGDSVILILRN 109
>gi|410909734|ref|XP_003968345.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Takifugu
rubripes]
Length = 124
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/90 (78%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 30 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 89
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKDR+ISKMFLRGDSVIIVLRNP
Sbjct: 90 KKKSKPVNKDRYISKMFLRGDSVIIVLRNP 119
>gi|229366980|gb|ACQ58470.1| Small nuclear ribonucleoprotein Sm D2 [Anoplopoma fimbria]
Length = 118
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/90 (78%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKDR+ISKMFLRGDSVIIVLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIIVLRNP 113
>gi|390604110|gb|EIN13501.1| Sm-like ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 111
Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 61/93 (65%), Positives = 72/93 (77%), Gaps = 14/93 (15%)
Query: 15 EEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
EE E + GPLSVL ++S++NN +LL RV+AFDRH NMVLENV+EMWTE+PK
Sbjct: 21 EEHEISQGPLSVLQQAVRNHAQVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEVPK 80
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 97
GK KK PVNKDRFISKMFLRGDSVI+VLR+
Sbjct: 81 -GKNKK---PVNKDRFISKMFLRGDSVILVLRH 109
>gi|392571577|gb|EIW64749.1| Sm-like ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 111
Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 62/93 (66%), Positives = 70/93 (75%), Gaps = 14/93 (15%)
Query: 15 EEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPK 64
EE E + GPLSVL +V+N+TQ LL RV+AFDRH NMVLENV+EMWTE+PK
Sbjct: 21 EEHEISQGPLSVLQQAVRNHTQVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEMPK 80
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 97
GK KK VNKDRFISKMFLRGDSVI+VLRN
Sbjct: 81 -GKNKK---AVNKDRFISKMFLRGDSVILVLRN 109
>gi|452846138|gb|EME48071.1| hypothetical protein DOTSEDRAFT_21783 [Dothistroma septosporum
NZE10]
Length = 121
Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 58/94 (61%), Positives = 70/94 (74%), Gaps = 11/94 (11%)
Query: 12 GKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE 61
G E+ EF +GPLS+L ++S +NN +LL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 27 GLLEQHEFTSGPLSLLQTAVRQHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE 86
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
+P+ G KK VNKDRFISKMFLRGDSVI+VL
Sbjct: 87 IPRLADG-KKGRAVNKDRFISKMFLRGDSVILVL 119
>gi|417408038|gb|JAA50593.1| Putative small nuclear ribonucleoprotein snrnp sm core protein,
partial [Desmodus rotundus]
Length = 140
Score = 117 bits (294), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 46 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 105
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 106 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 135
>gi|393218655|gb|EJD04143.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 112
Score = 117 bits (294), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 60/95 (63%), Positives = 73/95 (76%), Gaps = 14/95 (14%)
Query: 13 KTEEEEFNTGPLSVLM----------MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTEL 62
+ EE+E + GPLSVL+ +S++NN +LL RV+AFDRH NMVLENV+EMW E+
Sbjct: 20 QLEEQEISQGPLSVLLQAVRNHHQVLISLRNNKKLLARVKAFDRHTNMVLENVKEMWVEV 79
Query: 63 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 97
PK GK KK PVNKDRFISKMFLRGDSVI++LRN
Sbjct: 80 PK-GKNKK---PVNKDRFISKMFLRGDSVILILRN 110
>gi|17558868|ref|NP_506004.1| Protein SNR-4 [Caenorhabditis elegans]
gi|2833296|sp|Q18786.1|SMD2_CAEEL RecName: Full=Probable small nuclear ribonucleoprotein Sm D2;
Short=Sm-D2; AltName: Full=snRNP core protein D2
gi|3875190|emb|CAB01413.1| Protein SNR-4 [Caenorhabditis elegans]
Length = 118
Score = 117 bits (294), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/94 (73%), Positives = 77/94 (81%), Gaps = 10/94 (10%)
Query: 15 EEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPK 64
E+EEFN GPLS+L SVKNN Q LLGRV+AFDRHCNMVLENV+EMWTE+PK
Sbjct: 20 EDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPK 79
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
TGKGKKKA V KDRFISKMFLRGDSVI+V++NP
Sbjct: 80 TGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113
>gi|452985934|gb|EME85690.1| hypothetical protein MYCFIDRAFT_82569 [Pseudocercospora fijiensis
CIRAD86]
Length = 122
Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 69/91 (75%), Gaps = 11/91 (12%)
Query: 15 EEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
E EF +GPLS+L ++S +NN +LL RV+AFDRHCNMVLENV+EMWTE+P+
Sbjct: 31 ETHEFTSGPLSLLQTAVRQHTQVLISCRNNRKLLCRVKAFDRHCNMVLENVKEMWTEIPR 90
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
G KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 91 LADG-KKGRPVNKDRFISKMFLRGDSVILVL 120
>gi|324546471|gb|ADY49713.1| Small nuclear ribonucleoprotein Sm D2, partial [Ascaris suum]
Length = 120
Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 72/94 (76%), Positives = 78/94 (82%), Gaps = 10/94 (10%)
Query: 15 EEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPK 64
E+EEFN GPLS+L SVKNN Q LLGRV+AFDRHCNMVLENV+EMWTELPK
Sbjct: 20 EQEEFNVGPLSILTQSVKNNAQVMINCRNNRKLLGRVKAFDRHCNMVLENVKEMWTELPK 79
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
TGKGKKKA PV KDRFISKMFLRGDSVI+VL+NP
Sbjct: 80 TGKGKKKAKPVAKDRFISKMFLRGDSVILVLKNP 113
>gi|225704668|gb|ACO08180.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gi|341904454|gb|EGT60287.1| CBN-SNR-4 protein [Caenorhabditis brenneri]
Length = 118
Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 69/94 (73%), Positives = 77/94 (81%), Gaps = 10/94 (10%)
Query: 15 EEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPK 64
E+EEFN GPLS+L SVKNN Q LLGRV+AFDRHCNMVLENV+EMWTE+PK
Sbjct: 20 EDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPK 79
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
TGKGKKKA V KDRFISKMFLRGDSVI+V++NP
Sbjct: 80 TGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113
>gi|345315929|ref|XP_001520002.2| PREDICTED: small nuclear ribonucleoprotein Sm D2-like
[Ornithorhynchus anatinus]
Length = 123
Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 29 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 88
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 89 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 118
>gi|308503579|ref|XP_003113973.1| CRE-SNR-4 protein [Caenorhabditis remanei]
gi|308261358|gb|EFP05311.1| CRE-SNR-4 protein [Caenorhabditis remanei]
Length = 118
Score = 117 bits (294), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 69/94 (73%), Positives = 77/94 (81%), Gaps = 10/94 (10%)
Query: 15 EEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPK 64
E+EEFN GPLS+L SVKNN Q LLGRV+AFDRHCNMVLENV+EMWTE+PK
Sbjct: 20 EDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPK 79
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
TGKGKKKA V KDRFISKMFLRGDSVI+V++NP
Sbjct: 80 TGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113
>gi|225704522|gb|ACO08107.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gi|348508217|ref|XP_003441651.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Oreochromis
niloticus]
Length = 118
Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gi|4759158|ref|NP_004588.1| small nuclear ribonucleoprotein Sm D2 isoform 1 [Homo sapiens]
gi|58037145|ref|NP_081219.1| small nuclear ribonucleoprotein Sm D2 [Mus musculus]
gi|77735903|ref|NP_001029648.1| small nuclear ribonucleoprotein Sm D2 [Bos taurus]
gi|157820925|ref|NP_001102869.1| small nuclear ribonucleoprotein Sm D2 [Rattus norvegicus]
gi|302191671|ref|NP_001180521.1| small nuclear ribonucleoprotein Sm D2 [Macaca mulatta]
gi|318085119|ref|NP_001187657.1| small nuclear ribonucleoprotein sm d2 [Ictalurus punctatus]
gi|343887362|ref|NP_001230582.1| small nuclear ribonucleoprotein Sm D2 [Sus scrofa]
gi|356991224|ref|NP_001239341.1| small nuclear ribonucleoprotein Sm D2 [Canis lupus familiaris]
gi|149722210|ref|XP_001502799.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Equus
caballus]
gi|291414848|ref|XP_002723659.1| PREDICTED: small nuclear ribonucleoprotein D2 [Oryctolagus
cuniculus]
gi|296234130|ref|XP_002762293.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Callithrix
jacchus]
gi|297705196|ref|XP_002829469.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Pongo abelii]
gi|301786280|ref|XP_002928550.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Ailuropoda
melanoleuca]
gi|327286749|ref|XP_003228092.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Anolis
carolinensis]
gi|334328787|ref|XP_001365173.2| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Monodelphis
domestica]
gi|344269659|ref|XP_003406666.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Loxodonta
africana]
gi|348557650|ref|XP_003464632.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cavia
porcellus]
gi|390465430|ref|XP_003733405.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Callithrix
jacchus]
gi|397493317|ref|XP_003817554.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 1 [Pan
paniscus]
gi|397493319|ref|XP_003817555.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 2 [Pan
paniscus]
gi|397493321|ref|XP_003817556.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 3 [Pan
paniscus]
gi|397493323|ref|XP_003817557.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 4 [Pan
paniscus]
gi|397493325|ref|XP_003817558.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 5 [Pan
paniscus]
gi|402905973|ref|XP_003915782.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 1 [Papio
anubis]
gi|403267451|ref|XP_003925846.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Saimiri
boliviensis boliviensis]
gi|403299046|ref|XP_003940303.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Saimiri
boliviensis boliviensis]
gi|410054097|ref|XP_003953576.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Pan troglodytes]
gi|410982696|ref|XP_003997684.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 1 [Felis
catus]
gi|426243035|ref|XP_004015372.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Ovis aries]
gi|426389216|ref|XP_004061020.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 1 [Gorilla
gorilla gorilla]
gi|426389218|ref|XP_004061021.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 2 [Gorilla
gorilla gorilla]
gi|426389220|ref|XP_004061022.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 3 [Gorilla
gorilla gorilla]
gi|441655899|ref|XP_004091080.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Nomascus
leucogenys]
gi|441655902|ref|XP_004091081.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Nomascus
leucogenys]
gi|441655911|ref|XP_004091083.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Nomascus
leucogenys]
gi|51338666|sp|P62316.1|SMD2_HUMAN RecName: Full=Small nuclear ribonucleoprotein Sm D2; Short=Sm-D2;
AltName: Full=snRNP core protein D2
gi|59800293|sp|P62317.1|SMD2_MOUSE RecName: Full=Small nuclear ribonucleoprotein Sm D2; Short=Sm-D2;
AltName: Full=snRNP core protein D2
gi|109894870|sp|Q3SZF8.1|SMD2_BOVIN RecName: Full=Small nuclear ribonucleoprotein Sm D2; Short=Sm-D2;
AltName: Full=snRNP core protein D2
gi|6980599|pdb|1B34|B Chain B, Crystal Structure Of The D1d2 Sub-Complex From The Human
Snrnp Core Domain
gi|225734043|pdb|3CW1|C Chain C, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734052|pdb|3CW1|P Chain P, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734061|pdb|3CW1|Q Chain Q, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734070|pdb|3CW1|R Chain R, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|315583603|pdb|3PGW|Y Chain Y, Crystal Structure Of Human U1 Snrnp
gi|315583612|pdb|3PGW|V Chain V, Crystal Structure Of Human U1 Snrnp
gi|332639435|pdb|2Y9A|C Chain C, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639442|pdb|2Y9A|J Chain J, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639449|pdb|2Y9A|Q Chain Q, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639459|pdb|2Y9B|C Chain C, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639466|pdb|2Y9B|J Chain J, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639473|pdb|2Y9B|Q Chain Q, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639483|pdb|2Y9C|C Chain C, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639490|pdb|2Y9C|J Chain J, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639497|pdb|2Y9C|Q Chain Q, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639507|pdb|2Y9D|C Chain C, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639514|pdb|2Y9D|J Chain J, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639521|pdb|2Y9D|Q Chain Q, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|343781211|pdb|3S6N|B Chain B, Crystal Structure Of The Gemin2-Binding Domain Of Smn,
Gemin2 In Complex With Smd1D2FEG FROM HUMAN
gi|444302197|pdb|4F7U|B Chain B, Macromolecular Machine 6
gi|444302199|pdb|4F7U|D Chain D, Macromolecular Machine 6
gi|453055423|pdb|1VU2|B Chain B, The 8s Snrnp Assembly Intermediate
gi|453055431|pdb|1VU2|J Chain J, The 8s Snrnp Assembly Intermediate
gi|453055439|pdb|1VU2|R Chain R, The 8s Snrnp Assembly Intermediate
gi|453055447|pdb|1VU2|Z Chain Z, The 8s Snrnp Assembly Intermediate
gi|453055455|pdb|1VU2|HH Chain h, The 8s Snrnp Assembly Intermediate
gi|453055463|pdb|1VU2|PP Chain p, The 8s Snrnp Assembly Intermediate
gi|453055475|pdb|1VU2|XX Chain x, The 8s Snrnp Assembly Intermediate
gi|453055479|pdb|1VU3|B Chain B, The 8s Snrnp Assembly Intermediate
gi|453055487|pdb|1VU3|J Chain J, The 8s Snrnp Assembly Intermediate
gi|453055495|pdb|1VU3|R Chain R, The 8s Snrnp Assembly Intermediate
gi|453055503|pdb|1VU3|Z Chain Z, The 8s Snrnp Assembly Intermediate
gi|453055511|pdb|1VU3|HH Chain h, The 8s Snrnp Assembly Intermediate
gi|453055519|pdb|1VU3|PP Chain p, The 8s Snrnp Assembly Intermediate
gi|453056011|pdb|4F77|J Chain J, The 8s Snrnp Assembly Intermediate
gi|453056019|pdb|4F77|B Chain B, The 8s Snrnp Assembly Intermediate
gi|453056027|pdb|4F77|R Chain R, The 8s Snrnp Assembly Intermediate
gi|453056035|pdb|4F77|Z Chain Z, The 8s Snrnp Assembly Intermediate
gi|453056043|pdb|4F77|HH Chain h, The 8s Snrnp Assembly Intermediate
gi|453056051|pdb|4F77|PP Chain p, The 8s Snrnp Assembly Intermediate
gi|453056063|pdb|4F77|XX Chain x, The 8s Snrnp Assembly Intermediate
gi|4558644|gb|AAD22673.1|AC007191_1 SMD2_HUMAN [Homo sapiens]
gi|600748|gb|AAC13776.1| Sm D2 [Homo sapiens]
gi|12653431|gb|AAH00486.1| Small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Homo
sapiens]
gi|12804955|gb|AAH01930.1| Small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Homo
sapiens]
gi|12840909|dbj|BAB25006.1| unnamed protein product [Mus musculus]
gi|26353034|dbj|BAC40147.1| unnamed protein product [Mus musculus]
gi|27696661|gb|AAH43014.1| Small nuclear ribonucleoprotein D2 [Mus musculus]
gi|30109280|gb|AAH51208.1| Small nuclear ribonucleoprotein D2 [Mus musculus]
gi|74354236|gb|AAI02878.1| Small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Bos taurus]
gi|109734134|gb|AAI16859.1| Small nuclear ribonucleoprotein D2 [Mus musculus]
gi|109734137|gb|AAI16861.1| Small nuclear ribonucleoprotein D2 [Mus musculus]
gi|119577777|gb|EAW57373.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa, isoform
CRA_a [Homo sapiens]
gi|123980686|gb|ABM82172.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [synthetic
construct]
gi|123995513|gb|ABM85358.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [synthetic
construct]
gi|148691165|gb|EDL23112.1| mCG4862 [Mus musculus]
gi|149056801|gb|EDM08232.1| rCG54604 [Rattus norvegicus]
gi|158257256|dbj|BAF84601.1| unnamed protein product [Homo sapiens]
gi|197245986|gb|AAI68781.1| Small nuclear ribonucleoprotein D2 [Rattus norvegicus]
gi|208967434|dbj|BAG73731.1| small nuclear ribonucleoprotein D2 polypeptide [synthetic
construct]
gi|296477468|tpg|DAA19583.1| TPA: small nuclear ribonucleoprotein Sm D2 [Bos taurus]
gi|308323619|gb|ADO28945.1| small nuclear ribonucleoprotein sm d2 [Ictalurus punctatus]
gi|383412347|gb|AFH29387.1| small nuclear ribonucleoprotein Sm D2 isoform 1 [Macaca mulatta]
gi|387018126|gb|AFJ51181.1| Small nuclear ribonucleoprotein Sm D2 [Crotalus adamanteus]
gi|387542088|gb|AFJ71671.1| small nuclear ribonucleoprotein Sm D2 isoform 1 [Macaca mulatta]
gi|410291960|gb|JAA24580.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Pan
troglodytes]
gi|410332637|gb|JAA35265.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Pan
troglodytes]
Length = 118
Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gi|432893287|ref|XP_004075904.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Oryzias
latipes]
Length = 118
Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gi|60834798|gb|AAX37111.1| small nuclear ribonucleoprotein D2 polypeptide [synthetic
construct]
Length = 119
Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gi|62955141|ref|NP_001017582.1| small nuclear ribonucleoprotein Sm D2 [Danio rerio]
gi|62204867|gb|AAH93003.1| Si:dkey-113g17.2 [Danio rerio]
gi|169145930|emb|CAQ13816.1| novel protein similar to vertebrate small nuclear ribonucleoprotein
D2 polypeptide 16.5kDa (SNRPD2) [Danio rerio]
gi|225706716|gb|ACO09204.1| Small nuclear ribonucleoprotein Sm D2 [Osmerus mordax]
Length = 118
Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gi|52346166|ref|NP_001005128.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Xenopus
(Silurana) tropicalis]
gi|50417589|gb|AAH77664.1| MGC89748 protein [Xenopus (Silurana) tropicalis]
gi|89272067|emb|CAJ81304.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Xenopus
(Silurana) tropicalis]
gi|170285025|gb|AAI61312.1| MGC89748 protein [Xenopus (Silurana) tropicalis]
Length = 118
Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gi|431909174|gb|ELK12764.1| Small nuclear ribonucleoprotein Sm D2 [Pteropus alecto]
Length = 138
Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 44 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 103
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 104 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 133
>gi|221221306|gb|ACM09314.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
Length = 121
Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gi|453086972|gb|EMF15013.1| Sm-like ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 121
Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 70/91 (76%), Gaps = 11/91 (12%)
Query: 15 EEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
E EF +GPLS+L ++S +NN +LLGRV+AFDRHCNMVLENV+EMW+E P+
Sbjct: 30 ETHEFTSGPLSLLQTAVRQHTQVLISCRNNRKLLGRVKAFDRHCNMVLENVKEMWSETPR 89
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
T GKK + VNKDRFISKMFLRGDSVI+VL
Sbjct: 90 TSDGKKGRV-VNKDRFISKMFLRGDSVILVL 119
>gi|398391274|ref|XP_003849097.1| small nuclear ribonucleoprotein Sm D2 [Zymoseptoria tritici IPO323]
gi|339468973|gb|EGP84073.1| hypothetical protein MYCGRDRAFT_101457 [Zymoseptoria tritici
IPO323]
Length = 122
Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 58/94 (61%), Positives = 70/94 (74%), Gaps = 11/94 (11%)
Query: 12 GKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE 61
G E EF +GPLS+L ++S +NN ++L RV+AFDRHCNMVLENV+EMWTE
Sbjct: 28 GLLETHEFTSGPLSLLQTAVRNHAQVLISCRNNRKMLARVKAFDRHCNMVLENVKEMWTE 87
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
+P+ G KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 88 VPRLTDG-KKGRPVNKDRFISKMFLRGDSVILVL 120
>gi|291290931|ref|NP_001167498.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Xenopus
laevis]
gi|57032687|gb|AAH88924.1| Unknown (protein for MGC:85085) [Xenopus laevis]
Length = 118
Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gi|444730749|gb|ELW71123.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 149
Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 55 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 114
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 115 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 144
>gi|281348790|gb|EFB24374.1| hypothetical protein PANDA_018526 [Ailuropoda melanoleuca]
gi|355703667|gb|EHH30158.1| hypothetical protein EGK_10765, partial [Macaca mulatta]
gi|440902304|gb|ELR53111.1| Small nuclear ribonucleoprotein Sm D2, partial [Bos grunniens
mutus]
Length = 117
Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 82
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 83 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 112
>gi|209731722|gb|ACI66730.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|209733910|gb|ACI67824.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|209737798|gb|ACI69768.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|209738154|gb|ACI69946.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|225704008|gb|ACO07850.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
gi|225705510|gb|ACO08601.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
gi|303663493|gb|ADM16106.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
Length = 118
Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gi|358053885|dbj|GAB00018.1| hypothetical protein E5Q_06720 [Mixia osmundae IAM 14324]
Length = 111
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/103 (63%), Positives = 74/103 (71%), Gaps = 15/103 (14%)
Query: 5 MDEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLEN 54
MDE EE E + GPL+VL SVKN+TQ LL RV+AFDRH NMVLEN
Sbjct: 12 MDEAQIRA-LEEHEISQGPLNVLQQSVKNHTQILVALRNGHKLLARVKAFDRHSNMVLEN 70
Query: 55 VREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 97
V+EMWTE+PK GK KK PVNKDRFISK+FLRGDSVI+VLR+
Sbjct: 71 VKEMWTEIPK-GKNKK---PVNKDRFISKLFLRGDSVIMVLRS 109
>gi|237649049|ref|NP_808210.2| small nuclear ribonucleoprotein Sm D2 isoform 2 [Homo sapiens]
gi|332257074|ref|XP_003277641.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 4
[Nomascus leucogenys]
gi|332257076|ref|XP_003277642.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 5
[Nomascus leucogenys]
gi|332856260|ref|XP_001166252.2| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 4 [Pan
troglodytes]
gi|395854166|ref|XP_003799569.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Otolemur
garnettii]
gi|397493327|ref|XP_003817559.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 6 [Pan
paniscus]
gi|402905975|ref|XP_003915783.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 2 [Papio
anubis]
gi|410054100|ref|XP_003953577.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Pan troglodytes]
gi|410982698|ref|XP_003997685.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 2 [Felis
catus]
gi|426389224|ref|XP_004061024.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 5 [Gorilla
gorilla gorilla]
gi|426389226|ref|XP_004061025.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 6 [Gorilla
gorilla gorilla]
gi|441655907|ref|XP_004091082.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Nomascus
leucogenys]
gi|119577778|gb|EAW57374.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa, isoform
CRA_b [Homo sapiens]
gi|351697916|gb|EHB00835.1| Small nuclear ribonucleoprotein Sm D2 [Heterocephalus glaber]
gi|432101631|gb|ELK29680.1| Small nuclear ribonucleoprotein Sm D2 [Myotis davidii]
Length = 108
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 14 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 73
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 74 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 103
>gi|354486715|ref|XP_003505524.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cricetulus
griseus]
Length = 139
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/89 (71%), Positives = 72/89 (80%), Gaps = 10/89 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+ KG
Sbjct: 45 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSDKG 104
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRN 97
KKK+ P+NK +ISKMFL GDSVI+VLRN
Sbjct: 105 KKKSKPINKGHYISKMFLSGDSVIVVLRN 133
>gi|156058484|ref|XP_001595165.1| hypothetical protein SS1G_03254 [Sclerotinia sclerotiorum 1980]
gi|154701041|gb|EDO00780.1| hypothetical protein SS1G_03254 [Sclerotinia sclerotiorum 1980
UF-70]
gi|347839440|emb|CCD54012.1| similar to small nuclear ribonucleoprotein sm d2 [Botryotinia
fuckeliana]
Length = 118
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/95 (62%), Positives = 72/95 (75%), Gaps = 13/95 (13%)
Query: 12 GKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE 61
+ EE EF +GPLS+L ++S +NN +LL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 24 AQIEEHEFTSGPLSLLQAAVRSHGQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE 83
Query: 62 LPK-TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
P+ +G GK + PVNKDRFISKMFLRGDSVI+VL
Sbjct: 84 TPRLSGGGKGR--PVNKDRFISKMFLRGDSVILVL 116
>gi|225703700|gb|ACO07696.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/90 (76%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKDR++SKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYVSKMFLRGDSVIVVLRNP 113
>gi|308322523|gb|ADO28399.1| small nuclear ribonucleoprotein sm d2 [Ictalurus furcatus]
Length = 123
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 29 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 88
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 89 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 118
>gi|225704950|gb|ACO08321.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/90 (76%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLVNCRNNKELLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKDR+ISKMFLRGDS+I+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSIIVVLRNP 113
>gi|344249248|gb|EGW05352.1| Small nuclear ribonucleoprotein Sm D2 [Cricetulus griseus]
Length = 108
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/89 (71%), Positives = 72/89 (80%), Gaps = 10/89 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+ KG
Sbjct: 14 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSDKG 73
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRN 97
KKK+ P+NK +ISKMFL GDSVI+VLRN
Sbjct: 74 KKKSKPINKGHYISKMFLSGDSVIVVLRN 102
>gi|449302285|gb|EMC98294.1| hypothetical protein BAUCODRAFT_146847 [Baudoinia compniacensis
UAMH 10762]
Length = 119
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 68/91 (74%), Gaps = 11/91 (12%)
Query: 15 EEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPK 64
E EF +GPLS+L +V+N+TQ LL RV+AFDRHCNMVLENV+EMWTE P+
Sbjct: 28 ETHEFTSGPLSLLQTAVRNHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPR 87
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
G K+ PVNKDRFISKMFLRGDSVI+VL
Sbjct: 88 LTDG-KRGRPVNKDRFISKMFLRGDSVILVL 117
>gi|225704396|gb|ACO08044.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/90 (76%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKDR++SKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYVSKMFLRGDSVIVVLRNP 113
>gi|426389222|ref|XP_004061023.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 4 [Gorilla
gorilla gorilla]
Length = 136
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 42 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 101
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 102 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 131
>gi|395529567|ref|XP_003766882.1| PREDICTED: uncharacterized protein LOC100930002 [Sarcophilus
harrisii]
Length = 242
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/90 (76%), Positives = 76/90 (84%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 148 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 207
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKD +ISKMFLRGDSVI+VLRNP
Sbjct: 208 KKKSKPVNKDHYISKMFLRGDSVIVVLRNP 237
>gi|346975454|gb|EGY18906.1| small nuclear ribonucleoprotein Sm D2 [Verticillium dahliae
VdLs.17]
Length = 122
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/99 (59%), Positives = 71/99 (71%), Gaps = 16/99 (16%)
Query: 12 GKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENV-----R 56
+ EE EF+ GPLS+L ++S++NN +LL RV+AFDRHCNMVLENV +
Sbjct: 23 AQLEEHEFSAGPLSILQTAVRSHTQVLISIRNNRKLLARVKAFDRHCNMVLENVVRTRLK 82
Query: 57 EMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
EMWTE P+ G KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 83 EMWTETPRNADG-KKGRPVNKDRFISKMFLRGDSVILVL 120
>gi|345568451|gb|EGX51345.1| hypothetical protein AOL_s00054g415 [Arthrobotrys oligospora ATCC
24927]
Length = 112
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/94 (61%), Positives = 69/94 (73%), Gaps = 11/94 (11%)
Query: 12 GKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE 61
+ EE EF GPLS+L ++S +NN +LL RV+AFDRH NMVLENV+EMWTE
Sbjct: 18 AQLEEYEFANGPLSILQTAVRTHNQVLISCRNNRKLLARVKAFDRHSNMVLENVKEMWTE 77
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
P+ +G KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 78 TPRNAQG-KKGRPVNKDRFISKMFLRGDSVILVL 110
>gi|26337731|dbj|BAC32551.1| unnamed protein product [Mus musculus]
Length = 118
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/90 (76%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLS+L SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSMLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gi|441600622|ref|XP_004087625.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like isoform 1
[Nomascus leucogenys]
gi|441600625|ref|XP_004087626.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like isoform 2
[Nomascus leucogenys]
Length = 118
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/90 (70%), Positives = 72/90 (80%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLG V+AF+RHCNMVLEN++EMWTE+PK+ KG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRSSKKLLGHVKAFERHCNMVLENMKEMWTEVPKSSKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKD +ISKMFL GD VI+VLRNP
Sbjct: 84 KKKSKPVNKDCYISKMFLHGDLVIVVLRNP 113
>gi|225715792|gb|ACO13742.1| Small nuclear ribonucleoprotein Sm D2 [Esox lucius]
Length = 121
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/90 (76%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVK+NTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKSNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gi|209738048|gb|ACI69893.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|221220052|gb|ACM08687.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|221221714|gb|ACM09518.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|303664033|gb|ADM16126.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
Length = 121
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/90 (76%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVK+NTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKSNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gi|237858781|ref|NP_001153822.1| small nuclear ribonucleoprotein D2-like [Acyrthosiphon pisum]
gi|193606141|ref|XP_001943704.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Acyrthosiphon pisum]
gi|54287930|gb|AAV31412.1| putative small nuclear ribonucleoprotein D2-like protein [Toxoptera
citricida]
gi|239790582|dbj|BAH71844.1| ACYPI003451 [Acyrthosiphon pisum]
gi|239790584|dbj|BAH71845.1| ACYPI003451 [Acyrthosiphon pisum]
gi|239790586|dbj|BAH71846.1| ACYPI003451 [Acyrthosiphon pisum]
gi|239790588|dbj|BAH71847.1| ACYPI003451 [Acyrthosiphon pisum]
gi|239790590|dbj|BAH71848.1| ACYPI003451 [Acyrthosiphon pisum]
Length = 125
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/91 (70%), Positives = 75/91 (82%), Gaps = 10/91 (10%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
F TGP+SVL SV+NNTQ LL R++AFDRHCNMVLENVREMWTELPKTGKG
Sbjct: 25 FTTGPMSVLTQSVRNNTQVLINCRNNRKLLARIKAFDRHCNMVLENVREMWTELPKTGKG 84
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
KKKA V++D++ISKMFLRGDSVI+V++NPK
Sbjct: 85 KKKAKAVSRDKYISKMFLRGDSVILVVKNPK 115
>gi|242762206|ref|XP_002340329.1| small nuclear ribonucleoprotein SmD2, putative [Talaromyces
stipitatus ATCC 10500]
gi|218723525|gb|EED22942.1| small nuclear ribonucleoprotein SmD2, putative [Talaromyces
stipitatus ATCC 10500]
Length = 114
Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/94 (62%), Positives = 68/94 (72%), Gaps = 14/94 (14%)
Query: 12 GKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE 61
G EE E GPLS+L ++S +NN +LL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 23 GLVEEHELTAGPLSLLQTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE 82
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
PK GKG+ VNKDRFISKMFLRGDSVI+VL
Sbjct: 83 KPKGGKGR----GVNKDRFISKMFLRGDSVILVL 112
>gi|225705318|gb|ACO08505.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 111
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/90 (76%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVK+NTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 14 FNTGPLSVLTQSVKSNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 73
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 74 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 103
>gi|212529806|ref|XP_002145060.1| small nuclear ribonucleoprotein SmD2, putative [Talaromyces
marneffei ATCC 18224]
gi|210074458|gb|EEA28545.1| small nuclear ribonucleoprotein SmD2, putative [Talaromyces
marneffei ATCC 18224]
Length = 114
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/94 (62%), Positives = 68/94 (72%), Gaps = 14/94 (14%)
Query: 12 GKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE 61
G EE E GPLS+L ++S +NN +LL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 23 GLVEEHELTAGPLSLLQTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE 82
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
PK GKG+ VNKDRFISKMFLRGDSVI+VL
Sbjct: 83 KPKGGKGR----GVNKDRFISKMFLRGDSVILVL 112
>gi|336274873|ref|XP_003352190.1| hypothetical protein SMAC_02625 [Sordaria macrospora k-hell]
Length = 108
Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 57/91 (62%), Positives = 68/91 (74%), Gaps = 11/91 (12%)
Query: 15 EEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
EE EF+ GPLS+L ++SV+N ++L RV+AFDRH NMVLENV+EMWTE P+
Sbjct: 17 EEHEFSAGPLSILQTAVRSHSQVLISVRNGRKILARVKAFDRHMNMVLENVKEMWTETPR 76
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
GKK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 77 LANGKKGK-PVNKDRFISKMFLRGDSVILVL 106
>gi|109085944|ref|XP_001108236.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Macaca
mulatta]
Length = 118
Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 69/90 (76%), Positives = 76/90 (84%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNT PLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTSPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gi|164426898|ref|XP_961124.2| small nuclear ribonucleoprotein Sm D2 [Neurospora crassa OR74A]
gi|157071520|gb|EAA31888.2| small nuclear ribonucleoprotein Sm D2 [Neurospora crassa OR74A]
Length = 119
Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 57/91 (62%), Positives = 68/91 (74%), Gaps = 11/91 (12%)
Query: 15 EEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
EE EF+ GPLS+L ++SV+N ++L RV+AFDRH NMVLENV+EMWTE P+
Sbjct: 28 EEHEFSAGPLSILQTAVRSHSQVLISVRNGRKILARVKAFDRHMNMVLENVKEMWTETPR 87
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
GKK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 88 LANGKKGK-PVNKDRFISKMFLRGDSVILVL 117
>gi|380092270|emb|CCC10046.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 119
Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 57/91 (62%), Positives = 68/91 (74%), Gaps = 11/91 (12%)
Query: 15 EEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
EE EF+ GPLS+L ++SV+N ++L RV+AFDRH NMVLENV+EMWTE P+
Sbjct: 28 EEHEFSAGPLSILQTAVRSHSQVLISVRNGRKILARVKAFDRHMNMVLENVKEMWTETPR 87
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
GKK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 88 LANGKKGK-PVNKDRFISKMFLRGDSVILVL 117
>gi|336472988|gb|EGO61148.1| small nuclear ribonucleoprotein Sm D2 [Neurospora tetrasperma FGSC
2508]
gi|350293763|gb|EGZ74848.1| small nuclear ribonucleoprotein Sm D2 [Neurospora tetrasperma FGSC
2509]
Length = 119
Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 57/91 (62%), Positives = 68/91 (74%), Gaps = 11/91 (12%)
Query: 15 EEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
EE EF+ GPLS+L ++SV+N ++L RV+AFDRH NMVLENV+EMWTE P+
Sbjct: 28 EEHEFSAGPLSILQTAVRSHSQVLISVRNGRKILARVKAFDRHMNMVLENVKEMWTETPR 87
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
GKK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 88 LANGKKGK-PVNKDRFISKMFLRGDSVILVL 117
>gi|237832903|ref|XP_002365749.1| small nuclear ribonucleoprotein Sm D2, putative [Toxoplasma gondii
ME49]
gi|401408795|ref|XP_003883846.1| hypothetical protein NCLIV_035950 [Neospora caninum Liverpool]
gi|211963413|gb|EEA98608.1| small nuclear ribonucleoprotein Sm D2, putative [Toxoplasma gondii
ME49]
gi|221488207|gb|EEE26421.1| small nuclear ribonucleoprotein Sm D2, putative [Toxoplasma gondii
GT1]
gi|221508720|gb|EEE34289.1| small nuclear ribonucleoprotein Sm D2, putative [Toxoplasma gondii
VEG]
gi|325118263|emb|CBZ53814.1| hypothetical protein NCLIV_035950 [Neospora caninum Liverpool]
Length = 104
Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 72/105 (68%), Gaps = 11/105 (10%)
Query: 5 MDEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQLL----------GRVRAFDRHCNMVLEN 54
MDE + GPLSVL SVK+N+Q+L GRV+AFDRHCN+VL +
Sbjct: 1 MDEKIVALNPNRDHPPEGPLSVLAASVKDNSQVLINCRNNRKVLGRVKAFDRHCNLVLTD 60
Query: 55 VREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
VREMWTE K G GKKK VNKDRFISK+FLRGD+VI++LRNPK
Sbjct: 61 VREMWTETSKGG-GKKKVRTVNKDRFISKLFLRGDAVILILRNPK 104
>gi|403288352|ref|XP_003935370.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like isoform 1
[Saimiri boliviensis boliviensis]
gi|403288354|ref|XP_003935371.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like isoform 2
[Saimiri boliviensis boliviensis]
Length = 145
Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 68/90 (75%), Positives = 76/90 (84%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AF+RHCNMVLENV+E WTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFNRHCNMVLENVKETWTEVPKSGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gi|296213417|ref|XP_002753261.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Callithrix
jacchus]
Length = 118
Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 69/89 (77%), Positives = 76/89 (85%), Gaps = 10/89 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRN 97
KKK+ PVNKDR+ISKMFLRGDSVI+VLRN
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRN 112
>gi|225704758|gb|ACO08225.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 68/90 (75%), Positives = 76/90 (84%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKDR++SKMF RGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYVSKMFQRGDSVIVVLRNP 113
>gi|296204251|ref|XP_002749249.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Callithrix
jacchus]
Length = 118
Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 68/90 (75%), Positives = 76/90 (84%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGR +AFDRHCNMVLEN++EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRAKAFDRHCNMVLENMKEMWTEVPKSGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>gi|225709580|gb|ACO10636.1| Small nuclear ribonucleoprotein Sm D2 [Caligus rogercresseyi]
Length = 121
Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 68/90 (75%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVK+NTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKSNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVN+DR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNRDRYISKMFLRGDSVIVVLRNP 113
>gi|340959200|gb|EGS20381.1| putative small nuclear ribonucleoprotein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 592
Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats.
Identities = 57/94 (60%), Positives = 67/94 (71%), Gaps = 12/94 (12%)
Query: 12 GKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTE 61
+ EE E GPLS+L +V+++TQ LL RV+AFDRHCNM+LENV+EMWTE
Sbjct: 499 AQIEEWEMANGPLSLLQTAVRSHTQVLISVRSGRKLLARVKAFDRHCNMILENVKEMWTE 558
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
P T KK PVNKDRFISKMFLRGDSV+IVL
Sbjct: 559 TPVT--NGKKGRPVNKDRFISKMFLRGDSVVIVL 590
>gi|109131908|ref|XP_001099573.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Macaca
mulatta]
Length = 118
Score = 114 bits (285), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 69/90 (76%), Positives = 76/90 (84%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKDR+ISKMFLR DSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRRDSVIVVLRNP 113
>gi|70997219|ref|XP_753362.1| small nuclear ribonucleoprotein SmD2 [Aspergillus fumigatus Af293]
gi|66850998|gb|EAL91324.1| small nuclear ribonucleoprotein SmD2, putative [Aspergillus
fumigatus Af293]
gi|159126913|gb|EDP52029.1| small nuclear ribonucleoprotein SmD2, putative [Aspergillus
fumigatus A1163]
Length = 122
Score = 114 bits (284), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 67/91 (73%), Gaps = 14/91 (15%)
Query: 15 EEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
EE E GPLS+L ++S +NN +LL RV+AFDRHCNMVLENV+EMWTE PK
Sbjct: 34 EEHELTAGPLSLLQTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPK 93
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
GKG+ VNKDRFISKMFLRGDSVI+VL
Sbjct: 94 GGKGRG----VNKDRFISKMFLRGDSVILVL 120
>gi|239788764|dbj|BAH71046.1| ACYPI003451 [Acyrthosiphon pisum]
Length = 125
Score = 114 bits (284), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 64/91 (70%), Positives = 74/91 (81%), Gaps = 10/91 (10%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
F TGP+SVL SV+NNTQ LL R++AFDRHCNMVLENVREMWTELPKTGKG
Sbjct: 25 FTTGPMSVLTQSVRNNTQVLINCRNNRKLLARIKAFDRHCNMVLENVREMWTELPKTGKG 84
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
KKKA V++D++ISKMFLRGDSVI+V+ NPK
Sbjct: 85 KKKAKAVSRDKYISKMFLRGDSVILVVMNPK 115
>gi|119478615|ref|XP_001259398.1| small nuclear ribonucleoprotein SmD2, putative [Neosartorya
fischeri NRRL 181]
gi|121713894|ref|XP_001274558.1| small nuclear ribonucleoprotein SmD2, putative [Aspergillus
clavatus NRRL 1]
gi|119402711|gb|EAW13132.1| small nuclear ribonucleoprotein SmD2, putative [Aspergillus
clavatus NRRL 1]
gi|119407552|gb|EAW17501.1| small nuclear ribonucleoprotein SmD2, putative [Neosartorya
fischeri NRRL 181]
Length = 115
Score = 114 bits (284), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 67/91 (73%), Gaps = 14/91 (15%)
Query: 15 EEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
EE E GPLS+L ++S +NN +LL RV+AFDRHCNMVLENV+EMWTE PK
Sbjct: 27 EEHELTAGPLSLLQTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPK 86
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
GKG+ VNKDRFISKMFLRGDSVI+VL
Sbjct: 87 GGKGRG----VNKDRFISKMFLRGDSVILVL 113
>gi|213405485|ref|XP_002173514.1| small nuclear ribonucleoprotein Sm D2 [Schizosaccharomyces
japonicus yFS275]
gi|212001561|gb|EEB07221.1| small nuclear ribonucleoprotein Sm D2 [Schizosaccharomyces
japonicus yFS275]
Length = 114
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/97 (59%), Positives = 70/97 (72%), Gaps = 11/97 (11%)
Query: 12 GKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTE 61
+ EE EF++GPLSVL +VKN+ Q LL RV+AFDRH NMVLENV+EMWTE
Sbjct: 18 ARLEEYEFSSGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTE 77
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KT G KK P+N+DRFISKMFLRGD V++V+R P
Sbjct: 78 RRKTSSG-KKGKPINRDRFISKMFLRGDGVVLVVRIP 113
>gi|109510075|ref|XP_001054247.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Rattus
norvegicus]
gi|109512989|ref|XP_214847.2| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Rattus
norvegicus]
Length = 118
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/90 (74%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL S+KNNTQ LLGRV+AFDRHCNMVLENV+E+WTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSIKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEIWTEVPKSGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKDR+ISKMFLRG+SVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGNSVIVVLRNP 113
>gi|340368003|ref|XP_003382542.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Amphimedon queenslandica]
Length = 119
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/90 (74%), Positives = 73/90 (81%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLS+L SVK NTQ LL RV+AFDRH NMVLENV+EMWTE PKTGKG
Sbjct: 23 FNTGPLSLLTQSVKYNTQVLINCRNNRKLLARVKAFDRHFNMVLENVKEMWTETPKTGKG 82
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKKA PVNKDRFI+KMF+RGDSVI+VLRNP
Sbjct: 83 KKKARPVNKDRFIAKMFIRGDSVILVLRNP 112
>gi|320590837|gb|EFX03280.1| small nuclear ribonucleoprotein sm d2 [Grosmannia clavigera kw1407]
Length = 116
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/94 (59%), Positives = 70/94 (74%), Gaps = 12/94 (12%)
Query: 12 GKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE 61
+ E+ EF+ GPLS+L ++S+++N +LL RV+AFDRHCNM+LENV+EMWTE
Sbjct: 23 AQLEQWEFSNGPLSILQTAVRTHTQVLISIRSNRKLLARVKAFDRHCNMILENVKEMWTE 82
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
P T KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 83 TPVT--NGKKGRPVNKDRFISKMFLRGDSVILVL 114
>gi|425772328|gb|EKV10736.1| Small nuclear ribonucleoprotein SmD2, putative [Penicillium
digitatum Pd1]
gi|425777592|gb|EKV15755.1| Small nuclear ribonucleoprotein SmD2, putative [Penicillium
digitatum PHI26]
Length = 117
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 66/91 (72%), Gaps = 14/91 (15%)
Query: 15 EEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
EE E GPLS+L ++S +NN +LL RV+AFDRHCNMVLENV+EMWTE PK
Sbjct: 29 EEHELTAGPLSLLQTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPK 88
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
KGK VNKDRFISKMFLRGDSVI+VL
Sbjct: 89 GAKGKG----VNKDRFISKMFLRGDSVILVL 115
>gi|255954305|ref|XP_002567905.1| Pc21g08660 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589616|emb|CAP95763.1| Pc21g08660 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 123
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/91 (62%), Positives = 66/91 (72%), Gaps = 14/91 (15%)
Query: 15 EEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
EE E GPLS+L ++S +NN +LL RV+AFDRHCNMVLENV+EMWTE PK
Sbjct: 35 EEHELTAGPLSLLQTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPK 94
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
KGK VNKDRFISKMFLRGDSVI++L
Sbjct: 95 GAKGKG----VNKDRFISKMFLRGDSVILIL 121
>gi|348572834|ref|XP_003472197.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cavia
porcellus]
Length = 117
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/96 (65%), Positives = 72/96 (75%), Gaps = 11/96 (11%)
Query: 13 KTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTEL 62
K EEE+FNTGPLSVL S+KNNTQ LLG V+AFDRHCNMVLENV+EMWTE+
Sbjct: 18 KREEEKFNTGPLSVLTQSIKNNTQVLIDCRNNKKLLGLVKAFDRHCNMVLENVKEMWTEV 77
Query: 63 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KK+ PVNKD +ISKMFL G+SVI+VLRNP
Sbjct: 78 -PKSGKGKKSKPVNKDCYISKMFLHGESVIMVLRNP 112
>gi|317034834|ref|XP_001401271.2| small nuclear ribonucleoprotein Sm D2 [Aspergillus niger CBS
513.88]
gi|350639668|gb|EHA28022.1| hypothetical protein ASPNIDRAFT_41962 [Aspergillus niger ATCC 1015]
gi|358374829|dbj|GAA91418.1| small nuclear ribonucleoprotein SmD2 [Aspergillus kawachii IFO
4308]
Length = 115
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 66/91 (72%), Gaps = 14/91 (15%)
Query: 15 EEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
EE E GPLS+L ++S +NN +LL RV+AFDRHCNMVLENV+EMWTE PK
Sbjct: 27 EEHELTAGPLSLLQTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPK 86
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
G GK VNKDRFISKMFLRGDSVI+VL
Sbjct: 87 GGNGKG----VNKDRFISKMFLRGDSVILVL 113
>gi|115387341|ref|XP_001211176.1| small nuclear ribonucleoprotein Sm D2 [Aspergillus terreus NIH2624]
gi|114195260|gb|EAU36960.1| small nuclear ribonucleoprotein Sm D2 [Aspergillus terreus NIH2624]
Length = 115
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 66/91 (72%), Gaps = 14/91 (15%)
Query: 15 EEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
EE E GPLS+L ++S +NN +LL RV+AFDRHCNMVLENV+EMWTE PK
Sbjct: 27 EEHELTAGPLSLLQTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPK 86
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
KGK VNKDRFISKMFLRGDSVI+VL
Sbjct: 87 GSKGKG----VNKDRFISKMFLRGDSVILVL 113
>gi|134081955|emb|CAK97221.1| unnamed protein product [Aspergillus niger]
Length = 117
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/92 (63%), Positives = 66/92 (71%), Gaps = 14/92 (15%)
Query: 14 TEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELP 63
EE E GPLS+L ++S +NN +LL RV+AFDRHCNMVLENV+EMWTE P
Sbjct: 28 VEEHELTAGPLSLLQTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKP 87
Query: 64 KTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
K G GK VNKDRFISKMFLRGDSVI+VL
Sbjct: 88 KGGNGK----GVNKDRFISKMFLRGDSVILVL 115
>gi|432102126|gb|ELK29935.1| Small nuclear ribonucleoprotein Sm D2 [Myotis davidii]
Length = 109
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/94 (63%), Positives = 70/94 (74%), Gaps = 11/94 (11%)
Query: 16 EEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKT 65
EEE NT PLSVL SVKNNTQ LLGRV+AFD H NMVLENV E+ TE+PK+
Sbjct: 11 EEELNTSPLSVLTPSVKNNTQVLINYRKNKNLLGRVKAFDGHYNMVLENVEELGTEVPKS 70
Query: 66 GKGKKKALPVNKDRFISKMFLR-GDSVIIVLRNP 98
KG+KK+ PV+KDR+IS MF R GDSVI+ LR+P
Sbjct: 71 DKGRKKSKPVHKDRYISAMFPRAGDSVIVGLRHP 104
>gi|355763191|gb|EHH62129.1| hypothetical protein EGM_20337, partial [Macaca fascicularis]
Length = 117
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/90 (75%), Positives = 75/90 (83%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 82
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKD +ISKMFLR DSVI+VLRNP
Sbjct: 83 KKKSKPVNKDHYISKMFLRRDSVIVVLRNP 112
>gi|145535864|ref|XP_001453665.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421387|emb|CAK86268.1| unnamed protein product [Paramecium tetraurelia]
Length = 103
Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/102 (56%), Positives = 69/102 (67%), Gaps = 11/102 (10%)
Query: 8 DTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVRE 57
+T +EE GP +L ++V +NTQ LLGRV+AFDRH NM+LENV E
Sbjct: 3 ETQKRTAQEETLEKGPFGLLTITVSHNTQVLIELRNNRKLLGRVKAFDRHMNMILENVTE 62
Query: 58 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
MWTE+PK KG KKA NK+RFI KMFLRGDSVI +LRNPK
Sbjct: 63 MWTEIPKGNKG-KKAHATNKERFIPKMFLRGDSVIYILRNPK 103
>gi|19115418|ref|NP_594506.1| Sm snRNP core protein Smd2 [Schizosaccharomyces pombe 972h-]
gi|12230558|sp|O14036.1|SMD2_SCHPO RecName: Full=Small nuclear ribonucleoprotein Sm D2; Short=Sm-D2;
AltName: Full=Complexed with cdc5 protein 9; AltName:
Full=snRNP core protein D2
gi|2414614|emb|CAB16363.1| Sm snRNP core protein Smd2 [Schizosaccharomyces pombe]
Length = 115
Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/97 (58%), Positives = 68/97 (70%), Gaps = 11/97 (11%)
Query: 12 GKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTE 61
+ EE EF+ GPLSVL +VKN+ Q LL RV+AFDRH NMVLENV+EMWTE
Sbjct: 18 ARLEEYEFSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTE 77
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
+T G KK +NKDRFISKMFLRGD V++V+R P
Sbjct: 78 KKRTASG-KKGKAINKDRFISKMFLRGDGVVLVVRIP 113
>gi|349803317|gb|AEQ17131.1| putative small nuclear ribonucleoprotein sm d2 [Pipa carvalhoi]
Length = 116
Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 67/88 (76%), Positives = 75/88 (85%), Gaps = 8/88 (9%)
Query: 19 FNTGPLSVLMMSVKNNTQLLGR--------VRAFDRHCNMVLENVREMWTELPKTGKGKK 70
FNTGPLSVL SVKNNTQ+L V+AFDRHCNMVLENV+EMWTE+PK+GKGKK
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLVKAFDRHCNMVLENVKEMWTEVPKSGKGKK 83
Query: 71 KALPVNKDRFISKMFLRGDSVIIVLRNP 98
K+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KSKPVNKDRYISKMFLRGDSVIVVLRNP 111
>gi|224010008|ref|XP_002293962.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220970634|gb|EED88971.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 108
Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 67/91 (73%), Gaps = 10/91 (10%)
Query: 18 EFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGK 67
+ +GP SVL +VK NTQ LLGRV+A+DRH N++LE+V+EMWTE K GK
Sbjct: 9 DLKSGPFSVLFKAVKGNTQVLVNVRNNHKLLGRVKAYDRHMNLLLEDVKEMWTEYSKGGK 68
Query: 68 GKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
G+K+ +NKDR++SKMFLRGDSVI+V+ NP
Sbjct: 69 GRKRGTSINKDRYVSKMFLRGDSVILVVSNP 99
>gi|340501173|gb|EGR27984.1| small nuclear ribonucleoprotein sm d2, putative [Ichthyophthirius
multifiliis]
Length = 103
Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 72/104 (69%), Gaps = 13/104 (12%)
Query: 5 MDEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLEN 54
MDE+ + K E+ F+TGP S+L +VK NTQ +L RVRAFDRH NMVLEN
Sbjct: 1 MDEEIS--KIPEDNFSTGPFSLLFKAVKANTQVLIALRNNRKILARVRAFDRHMNMVLEN 58
Query: 55 VREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
V EMWTE+P+ G+K P+ K+R+ SKMFLRGDSVI VLRNP
Sbjct: 59 VLEMWTEVPRGSHGQKSK-PMRKERYHSKMFLRGDSVIFVLRNP 101
>gi|452825642|gb|EME32637.1| small nuclear ribonucleoprotein D2 [Galdieria sulphuraria]
Length = 119
Score = 111 bits (277), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 74/96 (77%), Gaps = 14/96 (14%)
Query: 14 TEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELP 63
+ EEF+ GPLS+L +++V+N+ +LLG+V+AFDRH NM+LENV+E+WTE+P
Sbjct: 28 VKSEEFSQGPLSLLVDCVKDGTPVLINVRNSKKLLGKVKAFDRHFNMILENVKEIWTEIP 87
Query: 64 KTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
K+ KKA PVNKDRFI KMFLRGDSV++VL+ P+
Sbjct: 88 KS----KKARPVNKDRFIPKMFLRGDSVVLVLKAPQ 119
>gi|302695697|ref|XP_003037527.1| hypothetical protein SCHCODRAFT_13757 [Schizophyllum commune H4-8]
gi|300111224|gb|EFJ02625.1| hypothetical protein SCHCODRAFT_13757 [Schizophyllum commune H4-8]
Length = 127
Score = 110 bits (275), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 62/111 (55%), Positives = 72/111 (64%), Gaps = 30/111 (27%)
Query: 13 KTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVRE----- 57
+ EE E + GPLSVL +V+N+TQ LL RV+AFDRH NMVLENV+E
Sbjct: 19 QLEEHEISQGPLSVLQQAVRNHTQVLISLRNDKKLLARVKAFDRHSNMVLENVKEARQFT 78
Query: 58 -----------MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 97
MWTE+PK GK KK PVNKDRFISKMFLRGDSVI++LRN
Sbjct: 79 FSLPLNAYTQQMWTEIPK-GKNKK---PVNKDRFISKMFLRGDSVILILRN 125
>gi|328765680|gb|EGF75829.1| hypothetical protein BATDEDRAFT_15195 [Batrachochytrium
dendrobatidis JAM81]
Length = 74
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/68 (75%), Positives = 59/68 (86%)
Query: 25 SVLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM 84
S +++ +NN +LL RV+AFDRHCNMVLENV+EMWTE P+TGKG KKA PVNKDRFISKM
Sbjct: 6 SQVLVVCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPQTGKGIKKAKPVNKDRFISKM 65
Query: 85 FLRGDSVI 92
FLRGDS I
Sbjct: 66 FLRGDSGI 73
>gi|189208117|ref|XP_001940392.1| small nuclear ribonucleoprotein Sm D2 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|330933723|ref|XP_003304270.1| hypothetical protein PTT_16802 [Pyrenophora teres f. teres 0-1]
gi|187976485|gb|EDU43111.1| small nuclear ribonucleoprotein Sm D2 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|311319198|gb|EFQ87625.1| hypothetical protein PTT_16802 [Pyrenophora teres f. teres 0-1]
gi|451847200|gb|EMD60508.1| hypothetical protein COCSADRAFT_163837 [Cochliobolus sativus
ND90Pr]
gi|451997866|gb|EMD90331.1| hypothetical protein COCHEDRAFT_1157376 [Cochliobolus
heterostrophus C5]
Length = 117
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/94 (56%), Positives = 65/94 (69%), Gaps = 11/94 (11%)
Query: 12 GKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE 61
+ EE E TGPLS+L ++S +NN ++L RV+AFDRHCNMVLEN +EMWTE
Sbjct: 23 AQVEEHELTTGPLSILQTAVRSRTQVLISCRNNRKILARVKAFDRHCNMVLENAKEMWTE 82
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
P+ G VNKDRFISK+FLRGDSVI+VL
Sbjct: 83 TPRLANG-SYGRKVNKDRFISKLFLRGDSVILVL 115
>gi|109122268|ref|XP_001083377.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Macaca
mulatta]
Length = 118
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/89 (74%), Positives = 75/89 (84%), Gaps = 10/89 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
F+TGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FHTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRN 97
KKK+ PVNKDR+ISKMFLR DSV++VLRN
Sbjct: 84 KKKSKPVNKDRYISKMFLRQDSVVLVLRN 112
>gi|444724875|gb|ELW65462.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 117
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/90 (67%), Positives = 68/90 (75%), Gaps = 11/90 (12%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLS L SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+
Sbjct: 24 FNTGPLSELTQSVKNNTQVLINCCNNKKLLGRVKAFDRHCNMVLENVKEMWTEV-PKSGK 82
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KK+ PVNKDR+ISKMFLRGD VI+VL+NP
Sbjct: 83 GKKSKPVNKDRYISKMFLRGDLVIVVLQNP 112
>gi|396486327|ref|XP_003842389.1| similar to small nuclear ribonucleoprotein sm d2 [Leptosphaeria
maculans JN3]
gi|312218965|emb|CBX98910.1| similar to small nuclear ribonucleoprotein sm d2 [Leptosphaeria
maculans JN3]
Length = 117
Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/94 (56%), Positives = 65/94 (69%), Gaps = 11/94 (11%)
Query: 12 GKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE 61
+ EE E TGPLS+L ++S +NN ++L RV+AFDRHCNMVLEN +EMWTE
Sbjct: 23 AQVEEHELTTGPLSILQTAVRSRTQVLISCRNNRKILARVKAFDRHCNMVLENAKEMWTE 82
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
P+ G VNKDRFISK+FLRGDSVI+VL
Sbjct: 83 TPRLSNG-SMGRKVNKDRFISKLFLRGDSVILVL 115
>gi|392576339|gb|EIW69470.1| hypothetical protein TREMEDRAFT_30560, partial [Tremella
mesenterica DSM 1558]
Length = 117
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/93 (63%), Positives = 70/93 (75%), Gaps = 15/93 (16%)
Query: 15 EEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
EE E + GPLSVL ++S++NN +LL RV+AFDRH NMVLENV+EMWTE PK
Sbjct: 20 EEYEISQGPLSVLQQAVRNQSQVLISLRNNKKLLARVKAFDRHANMVLENVKEMWTETPK 79
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVII-VLR 96
GKGKK +NKDRFISK+FLRGDSVI+ VLR
Sbjct: 80 -GKGKK---TINKDRFISKLFLRGDSVILGVLR 108
>gi|148709180|gb|EDL41126.1| mCG49198 [Mus musculus]
Length = 118
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/90 (73%), Positives = 74/90 (82%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNKKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNK+ +ISKMFL GDS I+VLRNP
Sbjct: 84 KKKSKPVNKNCYISKMFLHGDSFIVVLRNP 113
>gi|219113577|ref|XP_002186372.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209583222|gb|ACI65842.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 122
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 70/105 (66%), Gaps = 12/105 (11%)
Query: 6 DEDTTGGKTEEE--EFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLE 53
D G T E + +GP S+L +V+ NTQ LL RV+A+DRH N++LE
Sbjct: 3 DNHENGESTSEHATDLKSGPFSILYQAVRGNTQVLINVRNNHKLLARVKAYDRHMNLLLE 62
Query: 54 NVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
+V+EMWTE+ K GKG+ + VNKDR++SKMFLRGDSVI+V+ NP
Sbjct: 63 DVKEMWTEVSKGGKGRTRGTAVNKDRYVSKMFLRGDSVILVVSNP 107
>gi|367050014|ref|XP_003655386.1| hypothetical protein THITE_2119053 [Thielavia terrestris NRRL 8126]
gi|347002650|gb|AEO69050.1| hypothetical protein THITE_2119053 [Thielavia terrestris NRRL 8126]
Length = 116
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/94 (58%), Positives = 67/94 (71%), Gaps = 12/94 (12%)
Query: 12 GKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE 61
+ E E + GPLS+L ++S+++N +LL RV+AFDRHCNM+LENV+EMWTE
Sbjct: 23 AQLESWEMSNGPLSLLQTAVRSHSQVLISIRSNRKLLARVKAFDRHCNMILENVKEMWTE 82
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
P KK PVNKDRFISKMFLRGDSVIIVL
Sbjct: 83 TP--VHNGKKGRPVNKDRFISKMFLRGDSVIIVL 114
>gi|268557296|ref|XP_002636637.1| C. briggsae CBR-SNR-4 protein [Caenorhabditis briggsae]
Length = 118
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/90 (72%), Positives = 73/90 (81%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
F+ GPLS+L SVKNN Q LLGRV+AFDRHCNMVLENV+EMWTE+PKTGKG
Sbjct: 24 FSVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKKA V KDRFISKMFLRGDSVI+V++NP
Sbjct: 84 KKKAKSVAKDRFISKMFLRGDSVILVVKNP 113
>gi|367028268|ref|XP_003663418.1| hypothetical protein MYCTH_2305356 [Myceliophthora thermophila ATCC
42464]
gi|347010687|gb|AEO58173.1| hypothetical protein MYCTH_2305356 [Myceliophthora thermophila ATCC
42464]
Length = 116
Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 55/94 (58%), Positives = 67/94 (71%), Gaps = 12/94 (12%)
Query: 12 GKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE 61
+ E E + GPLS+L ++S+++N +LL RV+AFDRHCNM+LENV+EMWTE
Sbjct: 23 AQLEAWEMSNGPLSLLQTAVRSHAQVLISIRSNRKLLARVKAFDRHCNMILENVKEMWTE 82
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
P KK PVNKDRFISKMFLRGDSVIIVL
Sbjct: 83 TP--VHNGKKGRPVNKDRFISKMFLRGDSVIIVL 114
>gi|118388573|ref|XP_001027383.1| Sm protein [Tetrahymena thermophila]
gi|89309153|gb|EAS07141.1| Sm protein [Tetrahymena thermophila SB210]
Length = 103
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 69/96 (71%), Gaps = 11/96 (11%)
Query: 14 TEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELP 63
T EE F+ GP S+L +VK NTQ +L +VRAFDRH NMVLENV EMWTE+P
Sbjct: 8 TPEETFSQGPFSLLFKAVKANTQVLIALRNNRKMLAKVRAFDRHMNMVLENVLEMWTEVP 67
Query: 64 KTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
+ G KK+ P+ K+R+I+K+FLRGDSVI VL+NP+
Sbjct: 68 RGSHG-KKSKPMKKERYITKLFLRGDSVIFVLKNPQ 102
>gi|171685514|ref|XP_001907698.1| hypothetical protein [Podospora anserina S mat+]
gi|170942718|emb|CAP68371.1| unnamed protein product [Podospora anserina S mat+]
Length = 116
Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 54/94 (57%), Positives = 67/94 (71%), Gaps = 12/94 (12%)
Query: 12 GKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE 61
+ E E + GPLS+L ++S+++N +LL RV+AFDRHCNM+LENV+EMWTE
Sbjct: 23 AQLEAYEMSNGPLSLLQTAVRSHSQVLISIRSNRKLLARVKAFDRHCNMILENVKEMWTE 82
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
P KK PVNKDRFISKMFLRGDSVI+VL
Sbjct: 83 TP--VHNGKKGRPVNKDRFISKMFLRGDSVILVL 114
>gi|378726124|gb|EHY52583.1| small nuclear ribonucleoprotein Sm D2 [Exophiala dermatitidis
NIH/UT8656]
Length = 100
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 67/91 (73%), Gaps = 15/91 (16%)
Query: 15 EEEEFNTGPLSVLM----------MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
E E +TGPLS+LM +S +NN +LL RV+AFDRHCNMVLENV+EMWTE K
Sbjct: 13 EAHELSTGPLSILMTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE--K 70
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
T KG K VNKDRFISKMFLRGDSVI+VL
Sbjct: 71 T-KGNSKG--VNKDRFISKMFLRGDSVILVL 98
>gi|290972303|ref|XP_002668893.1| predicted protein [Naegleria gruberi]
gi|290991668|ref|XP_002678457.1| predicted protein [Naegleria gruberi]
gi|284082430|gb|EFC36149.1| predicted protein [Naegleria gruberi]
gi|284092069|gb|EFC45713.1| predicted protein [Naegleria gruberi]
Length = 118
Score = 107 bits (267), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 58/88 (65%), Positives = 71/88 (80%), Gaps = 10/88 (11%)
Query: 22 GPLSVLMMSVK----------NNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 71
GPLS+L+ SV+ NN +LL RV+AFDRHCNMVLENV+EMWTE PK+GKG+KK
Sbjct: 30 GPLSLLLESVREQTQILISCRNNRKLLARVKAFDRHCNMVLENVQEMWTEQPKSGKGRKK 89
Query: 72 ALPVNKDRFISKMFLRGDSVIIVLRNPK 99
+ P+NK RF +K+FLRGDSVI+VLRNPK
Sbjct: 90 SKPINKTRFTNKLFLRGDSVILVLRNPK 117
>gi|169844304|ref|XP_001828873.1| pre-mRNA splicing factor [Coprinopsis cinerea okayama7#130]
gi|116509985|gb|EAU92880.1| pre-mRNA splicing factor [Coprinopsis cinerea okayama7#130]
Length = 130
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 72/114 (63%), Gaps = 33/114 (28%)
Query: 13 KTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVRE----- 57
+ EE E + GPLSVL ++S++NN +LL RV+AFDRH NMVLENV+E
Sbjct: 19 QLEEHEISQGPLSVLQQAVRNHAQVLISLRNNKKLLARVKAFDRHSNMVLENVKEERPSP 78
Query: 58 --------------MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 97
MWTE PK GK KK PVNKDRFISKMFLRGDSVI+VLRN
Sbjct: 79 FTTIQEPRLMVNSQMWTETPK-GKNKK---PVNKDRFISKMFLRGDSVILVLRN 128
>gi|300175427|emb|CBK20738.2| unnamed protein product [Blastocystis hominis]
Length = 457
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/101 (58%), Positives = 76/101 (75%), Gaps = 10/101 (9%)
Query: 8 DTTGGKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVRE 57
D + K+EE EF GPLS+L +++V+NN +LL V+AFDRHCNMVLENV+E
Sbjct: 353 DNSLEKSEEAEFAQGPLSILYRAVKNGTSVLINVRNNHKLLCHVKAFDRHCNMVLENVKE 412
Query: 58 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
+WTE+PK+GKGKKKA + KDRFI K+FLRGDSV++V NP
Sbjct: 413 IWTEVPKSGKGKKKAKAITKDRFIPKLFLRGDSVVVVCSNP 453
>gi|444705722|gb|ELW47114.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 118
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/90 (72%), Positives = 72/90 (80%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNM LEN++EMWTE PK+GKG
Sbjct: 24 FNTGPLSVLTPSVKNNTQVLINCCNNKKLLGRVKAFDRHCNMALENMKEMWTEDPKSGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKD +ISKMFL GDSVI+VL NP
Sbjct: 84 KKKSKPVNKDGYISKMFLHGDSVIVVLWNP 113
>gi|226470770|emb|CAX76818.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
Length = 87
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/74 (72%), Positives = 68/74 (91%)
Query: 25 SVLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM 84
+++++ +NN +LL RV+AFDRHCNMVLENV+EMWTE+P+ GKGKKK+ PVNKDRFISK+
Sbjct: 4 CLVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPRPGKGKKKSKPVNKDRFISKL 63
Query: 85 FLRGDSVIIVLRNP 98
FLRGDSVI+VLRNP
Sbjct: 64 FLRGDSVILVLRNP 77
>gi|315042035|ref|XP_003170394.1| hypothetical protein MGYG_07638 [Arthroderma gypseum CBS 118893]
gi|311345428|gb|EFR04631.1| hypothetical protein MGYG_07638 [Arthroderma gypseum CBS 118893]
Length = 135
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/91 (60%), Positives = 63/91 (69%), Gaps = 14/91 (15%)
Query: 15 EEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
EE E TGPLS+L ++S +NN +LL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 47 EEHELTTGPLSILQTATRAHSQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE--- 103
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
K VNKDRFISKMFLRGDSVI+VL
Sbjct: 104 -KPKGGKGKGVNKDRFISKMFLRGDSVILVL 133
>gi|50555361|ref|XP_505089.1| YALI0F06644p [Yarrowia lipolytica]
gi|49650959|emb|CAG77896.1| YALI0F06644p [Yarrowia lipolytica CLIB122]
Length = 115
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/98 (58%), Positives = 67/98 (68%), Gaps = 11/98 (11%)
Query: 8 DTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVRE 57
D K EE EF+ GPLS+L +V+N+TQ LL RV+AFDRH NMVLENV+E
Sbjct: 17 DVELQKLEEYEFSHGPLSLLQRAVQNHTQVLISCRNNKKLLARVKAFDRHSNMVLENVKE 76
Query: 58 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
MWTE KT G K V KDRFISKMFLRGD+VI+V+
Sbjct: 77 MWTEKTKTASG-KPGKTVTKDRFISKMFLRGDTVILVV 113
>gi|296809754|ref|XP_002845215.1| small nuclear ribonucleoprotein Sm D2 [Arthroderma otae CBS 113480]
gi|327292564|ref|XP_003230980.1| small nuclear ribonucleoprotein SmD2 [Trichophyton rubrum CBS
118892]
gi|238842603|gb|EEQ32265.1| small nuclear ribonucleoprotein Sm D2 [Arthroderma otae CBS 113480]
gi|326466786|gb|EGD92239.1| small nuclear ribonucleoprotein SmD2 [Trichophyton rubrum CBS
118892]
Length = 114
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/91 (60%), Positives = 63/91 (69%), Gaps = 14/91 (15%)
Query: 15 EEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
EE E TGPLS+L ++S +NN +LL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 26 EEHELTTGPLSILQTATRAHSQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE--- 82
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
K VNKDRFISKMFLRGDSVI+VL
Sbjct: 83 -KPKGGKGKGVNKDRFISKMFLRGDSVILVL 112
>gi|444721759|gb|ELW62473.1| putative small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 135
Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 61/77 (79%), Gaps = 10/77 (12%)
Query: 19 FNTGPLSVLMMSVKNNTQLL---------GRVRAFDRHCNMVLENVREMWTELPKTGKGK 69
FNTGP SVLM SVKNNTQ+L G ++AFDRHC+MVLENV+EMWTE+PK+ KG
Sbjct: 24 FNTGPHSVLMQSVKNNTQVLIHCHNKKVMGHMKAFDRHCDMVLENVKEMWTEVPKSRKG- 82
Query: 70 KKALPVNKDRFISKMFL 86
KK+ PVNKD +ISKMFL
Sbjct: 83 KKSKPVNKDHYISKMFL 99
>gi|380800505|gb|AFE72128.1| small nuclear ribonucleoprotein Sm D2 isoform 1, partial [Macaca
mulatta]
Length = 89
Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 64/84 (76%), Positives = 71/84 (84%), Gaps = 10/84 (11%)
Query: 25 SVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALP 74
SVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ P
Sbjct: 1 SVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKP 60
Query: 75 VNKDRFISKMFLRGDSVIIVLRNP 98
VNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 61 VNKDRYISKMFLRGDSVIVVLRNP 84
>gi|258567138|ref|XP_002584313.1| small nuclear ribonucleoprotein Sm D2 [Uncinocarpus reesii 1704]
gi|237905759|gb|EEP80160.1| small nuclear ribonucleoprotein Sm D2 [Uncinocarpus reesii 1704]
Length = 114
Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 63/91 (69%), Gaps = 14/91 (15%)
Query: 15 EEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
EE E TGPLS+L ++S +NN +LL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 26 EEHELTTGPLSILQTATRSHSQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE--- 82
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
K VNKDRF+SKMFLRGDSVI+VL
Sbjct: 83 -KPKGGKGKGVNKDRFVSKMFLRGDSVILVL 112
>gi|119174655|ref|XP_001239674.1| hypothetical protein CIMG_09295 [Coccidioides immitis RS]
gi|392869868|gb|EAS28397.2| small nuclear ribonucleoprotein Sm D2 [Coccidioides immitis RS]
Length = 114
Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 63/91 (69%), Gaps = 14/91 (15%)
Query: 15 EEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
EE E TGPLS+L ++S +NN +LL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 26 EEHELTTGPLSILQTATRSHSQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE--- 82
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
K VNKDRF+SKMFLRGDSVI+VL
Sbjct: 83 -KPKGGKGKGVNKDRFVSKMFLRGDSVILVL 112
>gi|322696181|gb|EFY87977.1| small nuclear ribonucleoprotein Sm D2 [Metarhizium acridum CQMa
102]
Length = 120
Score = 104 bits (259), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 64/89 (71%), Gaps = 11/89 (12%)
Query: 6 DEDTTGGKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENV 55
+++ T + EE EF +GPLS+L ++S++NN +LL RV+AFDRHCNMVLENV
Sbjct: 33 NDEYTQNQLEEHEFTSGPLSILQTAVKSHTQVLISIRNNRKLLARVKAFDRHCNMVLENV 92
Query: 56 REMWTELPKTGKGKKKALPVNKDRFISKM 84
+EMWTE P+ G KK PVNKDRFISKM
Sbjct: 93 KEMWTETPRLADG-KKGRPVNKDRFISKM 120
>gi|346325342|gb|EGX94939.1| small nuclear ribonucleoprotein Sm D2 [Cordyceps militaris CM01]
Length = 145
Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 49/85 (57%), Positives = 62/85 (72%), Gaps = 11/85 (12%)
Query: 12 GKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE 61
+ EE EF+ GPLS+L ++S++NN +LL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 48 AQLEEHEFSAGPLSILQTAVRSHVQVLISIRNNRKLLARVKAFDRHCNMVLENVKEMWTE 107
Query: 62 LPKTGKGKKKALPVNKDRFISKMFL 86
P+ G KK PVNKDRFISKM++
Sbjct: 108 TPRLADG-KKGRPVNKDRFISKMYV 131
>gi|325091149|gb|EGC44459.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces capsulatus H88]
Length = 187
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 68/91 (74%), Gaps = 14/91 (15%)
Query: 15 EEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
EE E +GPLS+L ++S +NN +LL RV+AFDRHCNMVLENV+EMWTE PK
Sbjct: 99 EEHELTSGPLSILQTATRSHAQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPK 158
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
GKGK VNKDRF+SKMFLRGDSVI+VL
Sbjct: 159 GGKGKG----VNKDRFVSKMFLRGDSVILVL 185
>gi|154283173|ref|XP_001542382.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces capsulatus NAm1]
gi|150410562|gb|EDN05950.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces capsulatus NAm1]
Length = 103
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 63/91 (69%), Gaps = 14/91 (15%)
Query: 15 EEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
EE E +GPLS+L ++S +NN +LL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 15 EEHELTSGPLSILQTATRSHAQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE--- 71
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
K VNKDRF+SKMFLRGDSVI+VL
Sbjct: 72 -KPKGGKGKGVNKDRFVSKMFLRGDSVILVL 101
>gi|226295357|gb|EEH50777.1| small nuclear ribonucleoprotein Sm D2 [Paracoccidioides
brasiliensis Pb18]
Length = 114
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 63/91 (69%), Gaps = 14/91 (15%)
Query: 15 EEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
EE E +GPLS+L ++S +NN +LL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 26 EEHELTSGPLSILQTATRSHSQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE--- 82
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
K VNKDRF+SKMFLRGDSVI+VL
Sbjct: 83 -KPKGGKGKGVNKDRFVSKMFLRGDSVILVL 112
>gi|156083176|ref|XP_001609072.1| small nuclear ribonucleoprotein [Babesia bovis T2Bo]
gi|154796322|gb|EDO05504.1| small nuclear ribonucleoprotein, putative [Babesia bovis]
Length = 162
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 71/96 (73%), Gaps = 13/96 (13%)
Query: 14 TEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELP 63
TE+++ +GPLSVL V++N+Q LLGRV+AFDRH NM+L +VREMWTE+
Sbjct: 70 TEDKDCPSGPLSVLEACVRDNSQVLINCRSNRKLLGRVKAFDRHFNMILTDVREMWTEV- 128
Query: 64 KTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
G GKKK + NKDR+IS++FLRGDSV++VL NPK
Sbjct: 129 SGGGGKKKYM--NKDRYISRLFLRGDSVVVVLSNPK 162
>gi|295670567|ref|XP_002795831.1| small nuclear ribonucleoprotein Sm D2 [Paracoccidioides sp.
'lutzii' Pb01]
gi|225677515|gb|EEH15799.1| small nuclear ribonucleoprotein Sm D2 [Paracoccidioides
brasiliensis Pb03]
gi|226284916|gb|EEH40482.1| small nuclear ribonucleoprotein Sm D2 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 114
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 63/91 (69%), Gaps = 14/91 (15%)
Query: 15 EEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
EE E +GPLS+L ++S +NN +LL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 26 EEHELTSGPLSILQTATRSHSQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE--- 82
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
K VNKDRF+SKMFLRGDSVI+VL
Sbjct: 83 -KPKGGKGKGVNKDRFVSKMFLRGDSVILVL 112
>gi|261189633|ref|XP_002621227.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces dermatitidis
SLH14081]
gi|225561709|gb|EEH09989.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces capsulatus
G186AR]
gi|239591463|gb|EEQ74044.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces dermatitidis
SLH14081]
gi|239613006|gb|EEQ89993.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces dermatitidis
ER-3]
gi|240275314|gb|EER38828.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus H143]
Length = 114
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 63/91 (69%), Gaps = 14/91 (15%)
Query: 15 EEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
EE E +GPLS+L ++S +NN +LL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 26 EEHELTSGPLSILQTATRSHAQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE--- 82
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
K VNKDRF+SKMFLRGDSVI+VL
Sbjct: 83 -KPKGGKGKGVNKDRFVSKMFLRGDSVILVL 112
>gi|84994530|ref|XP_951987.1| small nuclear ribonucleoprotein [Theileria annulata strain Ankara]
gi|65302148|emb|CAI74255.1| small nuclear ribonucleoprotein, putative [Theileria annulata]
Length = 106
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 75/109 (68%), Gaps = 13/109 (11%)
Query: 1 MSRAMDEDTTGGKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNM 50
MS M +DTT + + ++ GPLS+L +++ +NN ++L RV+AFDRHCNM
Sbjct: 1 MSTKMKQDTTSMELDNKDNPVGPLSILEECVRENCQVLINCRNNRKILARVKAFDRHCNM 60
Query: 51 VLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
+L +VREMWT K G GKKK KDRFI+++FLRGDSVI+VL+NPK
Sbjct: 61 ILTDVREMWTVRGK-GTGKKKL--ETKDRFITRLFLRGDSVIVVLKNPK 106
>gi|344302812|gb|EGW33086.1| hypothetical protein SPAPADRAFT_60395 [Spathaspora passalidarum
NRRL Y-27907]
Length = 112
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 70/95 (73%), Gaps = 13/95 (13%)
Query: 13 KTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTEL 62
K EE EF GP+S+L ++S +NN +L+ +V+AFDRHCN+VLENV+E+WTE
Sbjct: 19 KLEEFEFTHGPMSLLQNAVNNNTPIVISCRNNHKLIAKVKAFDRHCNLVLENVKELWTET 78
Query: 63 PKTGKGKK-KALPVNKDRFISKMFLRGDSVIIVLR 96
K KGKK K+ P K+RF+SKMFLRGDSVII+++
Sbjct: 79 VKNNKGKKIKSTP--KERFVSKMFLRGDSVIIIVK 111
>gi|448118540|ref|XP_004203524.1| Piso0_001135 [Millerozyma farinosa CBS 7064]
gi|448120946|ref|XP_004204107.1| Piso0_001135 [Millerozyma farinosa CBS 7064]
gi|359384392|emb|CCE79096.1| Piso0_001135 [Millerozyma farinosa CBS 7064]
gi|359384975|emb|CCE78510.1| Piso0_001135 [Millerozyma farinosa CBS 7064]
Length = 113
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/94 (53%), Positives = 69/94 (73%), Gaps = 11/94 (11%)
Query: 13 KTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTEL 62
K EE EF GP+S+L ++S +NN +L+ RV+AFDRHCN++LENV+E+WTE
Sbjct: 19 KLEEFEFTYGPMSLLQDAVKNGTPVVVSCRNNHKLVARVKAFDRHCNLILENVKELWTES 78
Query: 63 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 96
+ KG +K ++K+RF+SKMFLRGDSVIIVL+
Sbjct: 79 VRNNKG-QKVNSISKERFVSKMFLRGDSVIIVLK 111
>gi|126137433|ref|XP_001385240.1| hypothetical protein PICST_60825 [Scheffersomyces stipitis CBS
6054]
gi|126092462|gb|ABN67211.1| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 112
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 69/94 (73%), Gaps = 11/94 (11%)
Query: 13 KTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTEL 62
K EE EF GP+S++ ++S +NN +L+G+VRAFDRHCN++LENV+E+WTE
Sbjct: 19 KLEEFEFAHGPMSLIQNAVNNNTPIVISCRNNHKLIGKVRAFDRHCNLILENVKELWTET 78
Query: 63 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 96
K KGK ++++RFISK+FLRGDS++I+L+
Sbjct: 79 SKNNKGKATK-SISRERFISKLFLRGDSIVIILK 111
>gi|50423747|ref|XP_460458.1| DEHA2F02156p [Debaryomyces hansenii CBS767]
gi|49656127|emb|CAG88765.1| DEHA2F02156p [Debaryomyces hansenii CBS767]
Length = 115
Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/94 (53%), Positives = 68/94 (72%), Gaps = 11/94 (11%)
Query: 13 KTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTEL 62
K EE EF GP+S+L ++S +NN +L+ +V+AFDRHCN++LENV+E+WTE
Sbjct: 19 KLEEFEFTHGPMSLLQNAVNNGSPVVISCRNNHKLIAKVKAFDRHCNLILENVKELWTES 78
Query: 63 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 96
K KGKK +K+RF+SKMFLRGDSV+IVL+
Sbjct: 79 VKNNKGKKIK-STSKERFVSKMFLRGDSVVIVLK 111
>gi|146421306|ref|XP_001486603.1| hypothetical protein PGUG_02274 [Meyerozyma guilliermondii ATCC
6260]
gi|146390018|gb|EDK38176.1| hypothetical protein PGUG_02274 [Meyerozyma guilliermondii ATCC
6260]
Length = 112
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/94 (54%), Positives = 69/94 (73%), Gaps = 11/94 (11%)
Query: 13 KTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTEL 62
K EE EF GP+S+L ++S +NN +++ RV+AFDRHCNMVLENV+E+WTE
Sbjct: 19 KLEEFEFAHGPMSLLQNALDNNTPVVISCRNNHKMVARVKAFDRHCNMVLENVKELWTES 78
Query: 63 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 96
K GKG K V+K+RF+SK+FLRGDSV+IV++
Sbjct: 79 VKNGKG-KVVNSVSKERFVSKLFLRGDSVVIVVK 111
>gi|169614612|ref|XP_001800722.1| hypothetical protein SNOG_10452 [Phaeosphaeria nodorum SN15]
gi|160702782|gb|EAT81846.2| hypothetical protein SNOG_10452 [Phaeosphaeria nodorum SN15]
Length = 133
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 53/110 (48%), Positives = 66/110 (60%), Gaps = 27/110 (24%)
Query: 12 GKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE 61
+ EE E TGPLS+L ++S +NN ++L RV+AFDRHCNMVLEN +EMWTE
Sbjct: 23 AQVEEHELTTGPLSILQTAVRSRTQVLISCRNNRKILARVKAFDRHCNMVLENAKEMWTE 82
Query: 62 LPKTGKGKKKALPVNKDRFISKM----------------FLRGDSVIIVL 95
P+ G + VNKDRFISK+ FLRGDSVI+VL
Sbjct: 83 TPRLANG-QYGRKVNKDRFISKLYVSSAFKTYAMLTASSFLRGDSVILVL 131
>gi|412990385|emb|CCO19703.1| Small nuclear ribonucleoprotein Sm D2 [Bathycoccus prasinos]
Length = 97
Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 14/96 (14%)
Query: 14 TEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELP 63
TE+ E GPLSVL+ ++K N+Q LLGRV+AFDRH N++LENV+E+WT+
Sbjct: 6 TEDSEH--GPLSVLVSAIKTNSQVLINCRNNRKLLGRVKAFDRHLNLLLENVKEVWTD-- 61
Query: 64 KTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
+ + + K P NKDRFISK+FLRGDS+I+VL+NPK
Sbjct: 62 RNSQKESKTPPSNKDRFISKLFLRGDSIILVLKNPK 97
>gi|351699571|gb|EHB02490.1| Small nuclear ribonucleoprotein Sm D2 [Heterocephalus glaber]
Length = 91
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 56/66 (84%)
Query: 33 NNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVI 92
+N +LLG +AFDR CNMVLEN++EMWTE+PK G+GKKK PV KD +ISK+FL GDSVI
Sbjct: 21 HNKKLLGCAKAFDRDCNMVLENMKEMWTEVPKRGQGKKKFKPVRKDHYISKIFLHGDSVI 80
Query: 93 IVLRNP 98
+VL+NP
Sbjct: 81 MVLQNP 86
>gi|255718831|ref|XP_002555696.1| KLTH0G15246p [Lachancea thermotolerans]
gi|238937080|emb|CAR25259.1| KLTH0G15246p [Lachancea thermotolerans CBS 6340]
Length = 108
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/96 (53%), Positives = 69/96 (71%), Gaps = 17/96 (17%)
Query: 13 KTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTEL 62
+ EE EF GP+S++ ++S++NN +++ RV+AFDRHCNMVLENV+E+WTE
Sbjct: 19 QLEEFEFKHGPMSLINDAMVSKVPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE- 77
Query: 63 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
K KK VN++RFISK+FLRGDS+IIVLR P
Sbjct: 78 ----KQNKKT--VNRERFISKLFLRGDSIIIVLRAP 107
>gi|432118204|gb|ELK38063.1| Small nuclear ribonucleoprotein Sm D2 [Myotis davidii]
Length = 118
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/89 (64%), Positives = 67/89 (75%), Gaps = 10/89 (11%)
Query: 20 NTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGK 69
NTGP S+L SVKNNTQ LLG V+AFDRHCNMVLENV+EMWT +PK+GK K
Sbjct: 25 NTGPFSMLTQSVKNNTQVLINCRNNKKLLGWVKAFDRHCNMVLENVKEMWTGVPKSGKSK 84
Query: 70 KKALPVNKDRFISKMFLRGDSVIIVLRNP 98
+K+ VNKD +ISKMFL D VI+V+RNP
Sbjct: 85 EKSKTVNKDFYISKMFLHRDLVIVVMRNP 113
>gi|67624703|ref|XP_668634.1| small nuclear ribonucleoprotein [Cryptosporidium hominis TU502]
gi|126649020|ref|XP_001388072.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
gi|54659846|gb|EAL38408.1| small nuclear ribonucleoprotein [Cryptosporidium hominis]
gi|126117160|gb|EAZ51260.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
Length = 106
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 71/103 (68%), Gaps = 11/103 (10%)
Query: 6 DEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQLL----------GRVRAFDRHCNMVLENV 55
D + T+++ + GPLS+L VK NTQ+L GRV+AFDRHCN++L +
Sbjct: 4 DSNIESQTTKKDNPSEGPLSLLTECVKTNTQILVNCRNNRKILGRVKAFDRHCNLLLTDA 63
Query: 56 REMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
RE+WTE K+GK K A +NKDRFISK+F+RGDSVI++L++P
Sbjct: 64 REIWTESMKSGK-KGSAKYINKDRFISKLFVRGDSVILILKSP 105
>gi|212529808|ref|XP_002145061.1| small nuclear ribonucleoprotein SmD2, putative [Talaromyces
marneffei ATCC 18224]
gi|210074459|gb|EEA28546.1| small nuclear ribonucleoprotein SmD2, putative [Talaromyces
marneffei ATCC 18224]
Length = 117
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/93 (54%), Positives = 63/93 (67%), Gaps = 14/93 (15%)
Query: 12 GKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE 61
G EE E GPLS+L ++S +NN +LL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 23 GLVEEHELTAGPLSLLQTATRTHTQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE 82
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
PK GKG+ VNKDRFISKM+ S++I+
Sbjct: 83 KPKGGKGRG----VNKDRFISKMYTSPASLLII 111
>gi|399217363|emb|CCF74250.1| unnamed protein product [Babesia microti strain RI]
Length = 103
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 70/104 (67%), Gaps = 13/104 (12%)
Query: 6 DEDTTGGKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENV 55
D D ++ GPLS++ +++ +NN ++L RV+AFDRHCNM+L +
Sbjct: 3 DTDLDPTTINKDNPTEGPLSLIAECVMDNSQVLINCRNNRKILARVKAFDRHCNMILVDA 62
Query: 56 REMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
REMWT + +G GK+K VNKDRFISKMFLRGDSVI+VLRNPK
Sbjct: 63 REMWT-VKSSGGGKQKF--VNKDRFISKMFLRGDSVIVVLRNPK 103
>gi|50787671|emb|CAH04406.1| small nuclear riboprotein Sm D2 [Euplotes vannus]
Length = 113
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 69/103 (66%), Gaps = 11/103 (10%)
Query: 7 EDTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVR 56
E+ +EE GPLS+L +VK N Q LL R +AFDRH NMVLENV
Sbjct: 12 EEAQRHVPQEETITEGPLSLLTKAVKTNCQILVNCRNNRKLLARCKAFDRHMNMVLENVC 71
Query: 57 EMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
EMWTE+PK KGKK PVNK+RFI K+FLRGDSVI+V++NPK
Sbjct: 72 EMWTEMPKKQKGKKTK-PVNKERFIHKLFLRGDSVILVIKNPK 113
>gi|403414237|emb|CCM00937.1| predicted protein [Fibroporia radiculosa]
Length = 114
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/97 (58%), Positives = 66/97 (68%), Gaps = 19/97 (19%)
Query: 15 EEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRH----CNMVLENVREMWT 60
EE E + GPLSVL +V+N+TQ LL RV+AFDRH C V + +MWT
Sbjct: 21 EEHEISQGPLSVLQQAVRNHTQVLISLRNNKKLLARVKAFDRHSTGKCKRV-QTFVQMWT 79
Query: 61 ELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 97
ELPK GK KK PVNKDRFISKMFLRGDSVI++LRN
Sbjct: 80 ELPK-GKNKK---PVNKDRFISKMFLRGDSVILILRN 112
>gi|169779295|ref|XP_001824112.1| small nuclear ribonucleoprotein Sm D2 [Aspergillus oryzae RIB40]
gi|238499931|ref|XP_002381200.1| small nuclear ribonucleoprotein SmD2, putative [Aspergillus flavus
NRRL3357]
gi|83772851|dbj|BAE62979.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220692953|gb|EED49299.1| small nuclear ribonucleoprotein SmD2, putative [Aspergillus flavus
NRRL3357]
gi|391873159|gb|EIT82233.1| small nuclear ribonucleoprotein (snRNP) Sm core protein
[Aspergillus oryzae 3.042]
Length = 115
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 60/91 (65%), Gaps = 14/91 (15%)
Query: 15 EEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPK 64
EE E GPLS+L + + +TQ LL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 27 EEHELTAGPLSLLQTATRTHTQVLIACRSNRRLLARVKAFDRHCNMVLENVKEMWTE--- 83
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
K VNKDRFISKMFLRGDSVI+VL
Sbjct: 84 -KPKGGKGKGVNKDRFISKMFLRGDSVILVL 113
>gi|281209973|gb|EFA84141.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 667
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 60/92 (65%), Positives = 68/92 (73%), Gaps = 10/92 (10%)
Query: 5 MDEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLEN 54
M E + E++EF TGPLS+LM SV NTQ LLG VRAFDRHCNMVLEN
Sbjct: 1 MSEVEQEERDEQKEFETGPLSILMDSVNKNTQVLINVRNNKKLLGTVRAFDRHCNMVLEN 60
Query: 55 VREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
V+EMWTE+PKTGKGKKKA PVNKDRFISK+ +
Sbjct: 61 VKEMWTEIPKTGKGKKKAKPVNKDRFISKILI 92
>gi|119570508|gb|EAW50123.1| hCG2040270 [Homo sapiens]
Length = 117
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/90 (67%), Positives = 68/90 (75%), Gaps = 11/90 (12%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTG LSVL SVKNNTQ LLG V+AF RHCNMVLENV+E WTE+PK+GKG
Sbjct: 24 FNTGQLSVLTQSVKNNTQVLINCRHNTKLLGHVKAFHRHCNMVLENVKETWTEVPKSGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KK PVNKD +IS+MFL GD VI+VLRNP
Sbjct: 84 KKSK-PVNKDCYISRMFLHGDLVIVVLRNP 112
>gi|71031308|ref|XP_765296.1| small nuclear ribonucleoprotein D2 [Theileria parva strain Muguga]
gi|68352252|gb|EAN33013.1| small nuclear ribonucleoprotein D2, putative [Theileria parva]
Length = 106
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/109 (49%), Positives = 74/109 (67%), Gaps = 13/109 (11%)
Query: 1 MSRAMDEDTTGGKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNM 50
MS + +D T + + ++ GPLS+L +++ +NN ++L RV+AFDRHCNM
Sbjct: 1 MSTKVKQDPTPMELDNKDNPAGPLSILEECVRENCQVLINCRNNRKILARVKAFDRHCNM 60
Query: 51 VLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
+L NVREMWT K G GKKK KDRF+S++FLRGDSVI+VL+NPK
Sbjct: 61 ILTNVREMWTVRGK-GTGKKKL--ETKDRFLSRLFLRGDSVIVVLKNPK 106
>gi|397621815|gb|EJK66477.1| hypothetical protein THAOC_12605 [Thalassiosira oceanica]
Length = 112
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 71/104 (68%), Gaps = 10/104 (9%)
Query: 5 MDEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLEN 54
M DT T + +GP +VL +VK NTQ LLGRV+A+DRH N++LE+
Sbjct: 1 MATDTGNPSTGTTDLKSGPFNVLYKAVKGNTQVLVNVRNNHKLLGRVKAYDRHMNLLLED 60
Query: 55 VREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
V+EMWTE K GKGKK+ VNKDR++SKMFLRGDSVI+V+ NP
Sbjct: 61 VKEMWTEQSKGGKGKKRGTSVNKDRYVSKMFLRGDSVILVVSNP 104
>gi|448517223|ref|XP_003867742.1| Smd2 core Sm protein [Candida orthopsilosis Co 90-125]
gi|380352081|emb|CCG22305.1| Smd2 core Sm protein [Candida orthopsilosis]
Length = 111
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 69/95 (72%), Gaps = 12/95 (12%)
Query: 12 GKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE 61
K EE EF GP+S++ ++S +NN +L+G++RAFDRHCN+VLENV+E+WTE
Sbjct: 18 AKLEEFEFLHGPMSLINQAQKQNTPVIISCRNNHKLVGKIRAFDRHCNLVLENVKELWTE 77
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 96
K + K+ V+++RFISKMFLRGDSVII+L+
Sbjct: 78 TVKNEFNQTKS--VSRERFISKMFLRGDSVIIILK 110
>gi|238006980|gb|ACR34525.1| unknown [Zea mays]
gi|414586341|tpg|DAA36912.1| TPA: hypothetical protein ZEAMMB73_879106 [Zea mays]
Length = 85
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/82 (62%), Positives = 58/82 (70%), Gaps = 15/82 (18%)
Query: 5 MDEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLEN 54
M ++ GK EEEEF+TGPLSVLMMSVKNNTQ LLGRVRAFDRHCNMVLEN
Sbjct: 1 MADENEAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 60
Query: 55 VREMWTE-----LPKTGKGKKK 71
VREMWTE P+ + K++
Sbjct: 61 VREMWTEDFLSRSPRLARAKRR 82
>gi|365990359|ref|XP_003672009.1| hypothetical protein NDAI_0I01970 [Naumovozyma dairenensis CBS 421]
gi|343770783|emb|CCD26766.1| hypothetical protein NDAI_0I01970 [Naumovozyma dairenensis CBS 421]
Length = 110
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 70/97 (72%), Gaps = 17/97 (17%)
Query: 12 GKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE 61
+ EE EF GP+S++ ++S++NN +++ RV+AFDRHCNMVLENV+E+WTE
Sbjct: 19 NQLEEFEFKHGPMSLINDSVISKVPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE 78
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KGK+ +N++RFISK+FLRGDS+I++L+ P
Sbjct: 79 ----KKGKQ---IINRERFISKLFLRGDSIIVILKAP 108
>gi|363750444|ref|XP_003645439.1| hypothetical protein Ecym_3115 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889073|gb|AET38622.1| Hypothetical protein Ecym_3115 [Eremothecium cymbalariae
DBVPG#7215]
Length = 108
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 69/97 (71%), Gaps = 17/97 (17%)
Query: 12 GKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE 61
+ EE EF GP+S+L ++S++NN +++ R+++FDRHCNMVLENV+E+WTE
Sbjct: 18 AQLEEFEFKHGPMSLLHDAMTSRSPVIISLRNNHKIIARIKSFDRHCNMVLENVKELWTE 77
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
+GKK NK+RFISK+FLRGDSVI+VL+ P
Sbjct: 78 ----KEGKKLT---NKERFISKLFLRGDSVIVVLKAP 107
>gi|209877963|ref|XP_002140423.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209556029|gb|EEA06074.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 111
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 65/92 (70%), Gaps = 13/92 (14%)
Query: 20 NTGPLSVLMMSVKNNTQLL----------GRVRAFDRHCNMVLENVREMWTELPKTGKGK 69
N GPLS+L V+ NTQ+L GRV+AFDRHCN++L +VRE+WTE KT +
Sbjct: 19 NEGPLSLLSECVRTNTQILVNCRNNRKILGRVKAFDRHCNLLLTDVREIWTEAVKTNSSQ 78
Query: 70 KKALP---VNKDRFISKMFLRGDSVIIVLRNP 98
KK +NKDRFISK+F+RGDSVI++L++P
Sbjct: 79 KKKSSNRFINKDRFISKLFVRGDSVILILKSP 110
>gi|366992940|ref|XP_003676235.1| hypothetical protein NCAS_0D02930 [Naumovozyma castellii CBS 4309]
gi|342302101|emb|CCC69874.1| hypothetical protein NCAS_0D02930 [Naumovozyma castellii CBS 4309]
Length = 110
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 68/94 (72%), Gaps = 17/94 (18%)
Query: 15 EEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
EE EF GP+S++ ++S++NN +++ RV+AFDRHCNMVLENV+E+WTE K
Sbjct: 22 EEFEFKHGPMSLITDSMNSKVPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE--K 79
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
GK VN++RFISK+FLRGDSVI++++ P
Sbjct: 80 KGKS-----TVNRERFISKLFLRGDSVIVIVKAP 108
>gi|354543718|emb|CCE40440.1| hypothetical protein CPAR2_104760 [Candida parapsilosis]
Length = 111
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 69/95 (72%), Gaps = 12/95 (12%)
Query: 12 GKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE 61
K EE EF GP+S++ ++S +NN +L+G++RAFDRHCN+VLENV+E+WTE
Sbjct: 18 AKLEEFEFLHGPMSLINQAQKENTPVIISCRNNHKLVGKIRAFDRHCNLVLENVKELWTE 77
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 96
K + K+ V+++RFISK+FLRGDSVII+L+
Sbjct: 78 TVKNEFNQTKS--VSRERFISKLFLRGDSVIIILK 110
>gi|149245030|ref|XP_001527049.1| small nuclear ribonucleoprotein Sm D2 [Lodderomyces elongisporus
NRRL YB-4239]
gi|146449443|gb|EDK43699.1| small nuclear ribonucleoprotein Sm D2 [Lodderomyces elongisporus
NRRL YB-4239]
Length = 110
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 69/95 (72%), Gaps = 13/95 (13%)
Query: 12 GKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE 61
K EE EF GP+S++ ++S +NN +L+G+VRAFDRHCN+VLENV+E+WTE
Sbjct: 18 AKLEEFEFLHGPMSLIHQAQTENLPIVISCRNNHKLVGKVRAFDRHCNLVLENVKELWTE 77
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 96
T GK K +P ++RFISKMFLRGDSVIIV++
Sbjct: 78 -KVTEFGKTKNVP--RERFISKMFLRGDSVIIVVK 109
>gi|403253972|ref|XP_003919759.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Saimiri
boliviensis boliviensis]
Length = 117
Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 58/90 (64%), Positives = 66/90 (73%), Gaps = 11/90 (12%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
NTGPLSVL SVKN+TQ LLGRV+AF RHCNMVLENV+EMWTE+
Sbjct: 24 LNTGPLSVLTQSVKNSTQVLINCRNNKQLLGRVKAFHRHCNMVLENVKEMWTEV-PKSSK 82
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KK+ PV+KDR +SKMFLRGDSV +VLRNP
Sbjct: 83 GKKSKPVSKDRRVSKMFLRGDSVTVVLRNP 112
>gi|45201373|ref|NP_986943.1| AGR277Wp [Ashbya gossypii ATCC 10895]
gi|44986307|gb|AAS54767.1| AGR277Wp [Ashbya gossypii ATCC 10895]
gi|374110193|gb|AEY99098.1| FAGR277Wp [Ashbya gossypii FDAG1]
Length = 108
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 70/97 (72%), Gaps = 17/97 (17%)
Query: 12 GKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE 61
+ EE EF GP+S++ ++S++NN +++ RV++FDRHCNMVLENV+E+W+E
Sbjct: 18 AQLEEFEFKHGPMSLIQEAMTARTPVIISLRNNHKIIARVKSFDRHCNMVLENVKEIWSE 77
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
+GKK + NK+RFISK+FLRGDSVI+VL+ P
Sbjct: 78 ----REGKKIS---NKERFISKLFLRGDSVIVVLKAP 107
>gi|320583711|gb|EFW97924.1| Core Sm protein Sm D2 [Ogataea parapolymorpha DL-1]
Length = 110
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 66/93 (70%), Gaps = 14/93 (15%)
Query: 15 EEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
E+ EFN GPL +L ++S++NN +LL +V+AFDRHCNM+LENV+E+WTE
Sbjct: 21 EDYEFNNGPLRLLTNAIHNNATVLISLRNNHKLLAKVKAFDRHCNMILENVKEIWTETNP 80
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 97
+ KK ++RF+SKMFLRGDSVI+VL++
Sbjct: 81 DDRNKKMM----RERFVSKMFLRGDSVIVVLKH 109
>gi|403216466|emb|CCK70963.1| hypothetical protein KNAG_0F03010 [Kazachstania naganishii CBS
8797]
Length = 110
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 66/96 (68%), Gaps = 17/96 (17%)
Query: 13 KTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTEL 62
+ EE E GP+S++ ++S++NN +++ RV+AFDRHCNMVLENV+E+WTE
Sbjct: 20 QLEEFELRHGPMSLINEAVISRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE- 78
Query: 63 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KK NK+RFISK+FLRGDSVII+L+ P
Sbjct: 79 ------KKHNKTTNKERFISKLFLRGDSVIIILKAP 108
>gi|413942323|gb|AFW74972.1| hypothetical protein ZEAMMB73_294095 [Zea mays]
Length = 116
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 55/73 (75%), Gaps = 10/73 (13%)
Query: 8 DTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVRE 57
+ T K EEEEF+TGPLSVLMMSVKNNTQ LLGRVRAFDRHCNMVLENVRE
Sbjct: 3 EETNIKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVRE 62
Query: 58 MWTELPKTGKGKK 70
MWTE+ +T + K
Sbjct: 63 MWTEVGRTERSLK 75
>gi|12718491|emb|CAC28820.1| probable small nuclear ribonucleoprotein chain D2 [Neurospora
crassa]
Length = 126
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 59/83 (71%), Gaps = 11/83 (13%)
Query: 15 EEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
EE EF+ GPLS+L ++SV+N ++L RV+AFDRH NMVLENV+EMWTE P+
Sbjct: 28 EEHEFSAGPLSILQTAVRSHSQVLISVRNGRKILARVKAFDRHMNMVLENVKEMWTETPR 87
Query: 65 TGKGKKKALPVNKDRFISKMFLR 87
G KK PVNKDRFISKMF+
Sbjct: 88 LANG-KKGKPVNKDRFISKMFVH 109
>gi|254582138|ref|XP_002497054.1| ZYRO0D14366p [Zygosaccharomyces rouxii]
gi|238939946|emb|CAR28121.1| ZYRO0D14366p [Zygosaccharomyces rouxii]
Length = 110
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/90 (52%), Positives = 66/90 (73%), Gaps = 17/90 (18%)
Query: 19 FNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
F GPLS++ ++S++NN +++ RV+AFDRHCNM+LENV+E+WTE KG
Sbjct: 26 FKNGPLSLINDSVTTKNPVIISLRNNHKIIARVKAFDRHCNMILENVKELWTE----KKG 81
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
K+ VNK+RFISK+FLRGDSVI++L+ P
Sbjct: 82 KR---VVNKERFISKLFLRGDSVIVILKAP 108
>gi|255724860|ref|XP_002547359.1| small nuclear ribonucleoprotein Sm D2 [Candida tropicalis MYA-3404]
gi|240135250|gb|EER34804.1| small nuclear ribonucleoprotein Sm D2 [Candida tropicalis MYA-3404]
Length = 112
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/92 (55%), Positives = 66/92 (71%), Gaps = 11/92 (11%)
Query: 15 EEEEFNTGPLSVLMMSVKNNT----------QLLGRVRAFDRHCNMVLENVREMWTELPK 64
EE EFN GP+S+L +VKNNT +L+G+VRAFDRHCN+VLENV+++W+E
Sbjct: 21 EEYEFNHGPMSILNNAVKNNTPIIISCRNNHKLIGKVRAFDRHCNLVLENVKDLWSE-DI 79
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 96
KK V K+RFISK+FLRGDSVII+L+
Sbjct: 80 KNNKGKKIKSVPKERFISKLFLRGDSVIIILK 111
>gi|109089899|ref|XP_001087489.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Macaca
mulatta]
gi|355745907|gb|EHH50532.1| hypothetical protein EGM_01380 [Macaca fascicularis]
Length = 118
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/89 (70%), Positives = 70/89 (78%), Gaps = 10/89 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSV SVKNNTQ LLG V+AFDRH NMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVPTQSVKNNTQVLINCGNNKKLLGHVKAFDRHRNMVLENVKEMWTEVPKSGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRN 97
KKK+ PVNKD +ISKMFL DSVI+VLRN
Sbjct: 84 KKKSKPVNKDCYISKMFLHRDSVIVVLRN 112
>gi|444315235|ref|XP_004178275.1| hypothetical protein TBLA_0A09730 [Tetrapisispora blattae CBS 6284]
gi|387511314|emb|CCH58756.1| hypothetical protein TBLA_0A09730 [Tetrapisispora blattae CBS 6284]
Length = 109
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 69/96 (71%), Gaps = 17/96 (17%)
Query: 13 KTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTEL 62
+ EE EF GP+S++ ++S++NN +++ RV+AFD+HCNMVLENV+E+WTE
Sbjct: 19 QLEEFEFKHGPMSLINDALISKTPIIISLRNNHKIIARVKAFDKHCNMVLENVKELWTE- 77
Query: 63 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
G K +NK+RFISK+FLRGDSVI++L++P
Sbjct: 78 ---RNGNKL---INKERFISKLFLRGDSVIVILKSP 107
>gi|410074971|ref|XP_003955068.1| hypothetical protein KAFR_0A04970 [Kazachstania africana CBS 2517]
gi|372461650|emb|CCF55933.1| hypothetical protein KAFR_0A04970 [Kazachstania africana CBS 2517]
Length = 114
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 65/90 (72%), Gaps = 17/90 (18%)
Query: 19 FNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
F GPLS++ ++S++NN +++ RV+AFDRHCNMVLENV+E+WTE K GK
Sbjct: 30 FKHGPLSLINDSVLTRRPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE--KKGKS 87
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
VN++RFISK+FLRGDSVI+VL+ P
Sbjct: 88 -----LVNRERFISKLFLRGDSVIVVLKAP 112
>gi|238882386|gb|EEQ46024.1| small nuclear ribonucleoprotein Sm D2 [Candida albicans WO-1]
Length = 112
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/92 (55%), Positives = 67/92 (72%), Gaps = 11/92 (11%)
Query: 15 EEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
EE EFN GP+S+L ++S +NN +L+G+VRAFDRHCN+VLENV+E+WTE
Sbjct: 21 EEYEFNHGPMSILNNAVKNDSPIIISCRNNHKLIGKVRAFDRHCNLVLENVKELWTE-DI 79
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 96
KK ++K+RFISKMFLRGDSVII+L+
Sbjct: 80 KNNKGKKIKSISKERFISKMFLRGDSVIIILK 111
>gi|260942737|ref|XP_002615667.1| hypothetical protein CLUG_04549 [Clavispora lusitaniae ATCC 42720]
gi|238850957|gb|EEQ40421.1| hypothetical protein CLUG_04549 [Clavispora lusitaniae ATCC 42720]
Length = 112
Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 68/96 (70%), Gaps = 15/96 (15%)
Query: 13 KTEEEEFNTGPLSVLMMSVKNNT----------QLLGRVRAFDRHCNMVLENVREMWTEL 62
+ EE EF GP+SV+ S+ NNT +++G+V+AFDRHCN++LE+V+E+WTE
Sbjct: 19 QLEEFEFTHGPMSVIQSSMNNNTPVVVHCRNNHKVIGKVKAFDRHCNLILEDVKELWTET 78
Query: 63 PKTGKGK--KKALPVNKDRFISKMFLRGDSVIIVLR 96
+ KG K A +K+RFISK+FLRGDSVIIVL+
Sbjct: 79 TRNSKGAVIKTA---SKERFISKLFLRGDSVIIVLK 111
>gi|154310658|ref|XP_001554660.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
Length = 116
Score = 94.7 bits (234), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/84 (57%), Positives = 61/84 (72%), Gaps = 13/84 (15%)
Query: 12 GKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE 61
+ EE EF +GPLS+L ++S +NN +LL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 24 AQIEEHEFTSGPLSLLQAAVRSHGQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE 83
Query: 62 LPK-TGKGKKKALPVNKDRFISKM 84
P+ +G GK + PVNKDRFISK+
Sbjct: 84 TPRLSGGGKGR--PVNKDRFISKI 105
>gi|259487148|tpe|CBF85589.1| TPA: small nuclear ribonucleoprotein SmD2, putative
(AFU_orthologue; AFUA_5G12910) [Aspergillus nidulans
FGSC A4]
Length = 113
Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/85 (57%), Positives = 58/85 (68%), Gaps = 14/85 (16%)
Query: 12 GKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTE 61
+ EE E + GPLS+L +V+ NTQ LL RV+AFDRH NMVLENV+EMWTE
Sbjct: 23 AQIEEYELSNGPLSLLQTAVRTNTQVLISLRSNRKLLARVKAFDRHSNMVLENVKEMWTE 82
Query: 62 LPKTGKGKKKALPVNKDRFISKMFL 86
K GKG+ PVNKDRFISKM+L
Sbjct: 83 PQKGGKGR----PVNKDRFISKMYL 103
>gi|367005899|ref|XP_003687681.1| hypothetical protein TPHA_0K01130 [Tetrapisispora phaffii CBS 4417]
gi|357525986|emb|CCE65247.1| hypothetical protein TPHA_0K01130 [Tetrapisispora phaffii CBS 4417]
Length = 109
Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 47/90 (52%), Positives = 65/90 (72%), Gaps = 17/90 (18%)
Query: 19 FNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
F GP+S++ ++S++NN +++ RV+AFD+HCNMVLENV+E+WTE K
Sbjct: 25 FKHGPMSLINDSMIAKTPVIISLRNNHKIIARVKAFDKHCNMVLENVKELWTE-----KN 79
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
K K +NK+RFISK+FLRGDSVIIVL+ P
Sbjct: 80 KDKV--INKERFISKLFLRGDSVIIVLKAP 107
>gi|241951640|ref|XP_002418542.1| small nuclear ribonucleoprotein sm d2, putative; small nuclear
riboucleoprotein (snrnp) core protein d2, putative
[Candida dubliniensis CD36]
gi|223641881|emb|CAX43844.1| small nuclear ribonucleoprotein sm d2, putative [Candida
dubliniensis CD36]
Length = 112
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/92 (54%), Positives = 67/92 (72%), Gaps = 11/92 (11%)
Query: 15 EEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
EE EFN GP+S+L ++S +NN +L+G+VRAFDRHCN+VLENV+E+WTE
Sbjct: 21 EEYEFNHGPMSILNNAVKNDTPIIISCRNNHKLIGKVRAFDRHCNLVLENVKELWTE-DI 79
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 96
KK ++K+RFISK+FLRGDSVII+L+
Sbjct: 80 KNNKGKKIKSISKERFISKLFLRGDSVIIILK 111
>gi|355562622|gb|EHH19216.1| hypothetical protein EGK_19888 [Macaca mulatta]
Length = 118
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 62/89 (69%), Positives = 70/89 (78%), Gaps = 10/89 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSV SVKNNTQ LLG V+AFDRH NMVLE+V+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVPTQSVKNNTQVLINCGNNKKLLGHVKAFDRHRNMVLEDVKEMWTEVPKSGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRN 97
KKK+ PVNKD +ISKMFL DSVI+VLRN
Sbjct: 84 KKKSKPVNKDCYISKMFLHRDSVIVVLRN 112
>gi|50287515|ref|XP_446187.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525494|emb|CAG59111.1| unnamed protein product [Candida glabrata]
Length = 110
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 64/90 (71%), Gaps = 17/90 (18%)
Query: 19 FNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
F GP+S++ ++S++NN +L+ RV+AFDRHCN+VLENV+E+WTE
Sbjct: 26 FKHGPMSLINDAMITRNPVIISLRNNHKLIARVKAFDRHCNLVLENVKELWTE------- 78
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KK +N++RFISK+FLRGDSVI++L+ P
Sbjct: 79 KKNKQTINRERFISKLFLRGDSVIVILKAP 108
>gi|156840670|ref|XP_001643714.1| hypothetical protein Kpol_1009p2 [Vanderwaltozyma polyspora DSM
70294]
gi|156114337|gb|EDO15856.1| hypothetical protein Kpol_1009p2 [Vanderwaltozyma polyspora DSM
70294]
Length = 109
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 65/90 (72%), Gaps = 17/90 (18%)
Query: 19 FNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
F GP+S++ ++S++NN +++ RV+AFDRHCNMVLENV+E+WTE KG
Sbjct: 25 FKHGPMSLIDESMVLRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE----KKG 80
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
K +NK+RFISK+FLRGDS+I++L+ P
Sbjct: 81 NKT---INKERFISKLFLRGDSIIVILKAP 107
>gi|47215802|emb|CAG02856.1| unnamed protein product [Tetraodon nigroviridis]
Length = 108
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/78 (74%), Positives = 64/78 (82%), Gaps = 10/78 (12%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 82
Query: 69 KKKALPVNKDRFISKMFL 86
KKK+ PVNKDR+ISKMF
Sbjct: 83 KKKSKPVNKDRYISKMFC 100
>gi|6323305|ref|NP_013377.1| Smd2p [Saccharomyces cerevisiae S288c]
gi|6226704|sp|Q06217.2|SMD2_YEAST RecName: Full=Small nuclear ribonucleoprotein Sm D2; Short=Sm-D2;
AltName: Full=snRNP core protein D2
gi|2340971|gb|AAB67368.1| Ylr275wp [Saccharomyces cerevisiae]
gi|151940982|gb|EDN59363.1| Sm D2 [Saccharomyces cerevisiae YJM789]
gi|190405334|gb|EDV08601.1| small nuclear ribonucleoprotein Sm D2 [Saccharomyces cerevisiae
RM11-1a]
gi|259148258|emb|CAY81505.1| Smd2p [Saccharomyces cerevisiae EC1118]
gi|285813692|tpg|DAA09588.1| TPA: Smd2p [Saccharomyces cerevisiae S288c]
gi|349579983|dbj|GAA25144.1| K7_Smd2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 110
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 64/87 (73%), Gaps = 17/87 (19%)
Query: 22 GPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 71
GP+S++ ++S++NN +++ RV+AFDRHCNMVLENV+E+WTE K GK
Sbjct: 29 GPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE--KKGKN--- 83
Query: 72 ALPVNKDRFISKMFLRGDSVIIVLRNP 98
+N++RFISK+FLRGDSVI+VL+ P
Sbjct: 84 --VINRERFISKLFLRGDSVIVVLKTP 108
>gi|328350738|emb|CCA37138.1| Probable small nuclear ribonucleoprotein Sm D2 [Komagataella
pastoris CBS 7435]
Length = 108
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 68/100 (68%), Gaps = 17/100 (17%)
Query: 8 DTTGGKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVRE 57
D+ + E EF GP+S+L ++S++N+ +L+ +V+AFDRHCNMVLENV+E
Sbjct: 14 DSELQQLEAYEFQYGPMSILTTATNTQSTVIISLRNDHKLIAKVKAFDRHCNMVLENVKE 73
Query: 58 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 97
WT++ G K V ++RF+SKMFLRGDSV+++L++
Sbjct: 74 FWTDI---NNGTK----VTRERFVSKMFLRGDSVVVILKH 106
>gi|403222339|dbj|BAM40471.1| small nuclear ribonucleoprotein [Theileria orientalis strain
Shintoku]
Length = 105
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 72/109 (66%), Gaps = 14/109 (12%)
Query: 1 MSRAMDEDTTGGKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNM 50
MS ++++ + + + +GPLS+L +++ +NN ++L RV+AFDRH NM
Sbjct: 1 MSTKTKQESSSMEVDNRDSPSGPLSILEECVRENCQVLINCRNNRKILARVKAFDRHFNM 60
Query: 51 VLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
+L +VREMWT KG KK + KDRFI+++FLRGDSVI+VL+NPK
Sbjct: 61 ILTDVREMWTV---KSKGNKKKMET-KDRFITRLFLRGDSVIVVLKNPK 105
>gi|254566467|ref|XP_002490344.1| Core Sm protein Sm D2 [Komagataella pastoris GS115]
gi|238030140|emb|CAY68063.1| Core Sm protein Sm D2 [Komagataella pastoris GS115]
Length = 124
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 68/101 (67%), Gaps = 17/101 (16%)
Query: 8 DTTGGKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVRE 57
D+ + E EF GP+S+L ++S++N+ +L+ +V+AFDRHCNMVLENV+E
Sbjct: 30 DSELQQLEAYEFQYGPMSILTTATNTQSTVIISLRNDHKLIAKVKAFDRHCNMVLENVKE 89
Query: 58 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
WT++ G K V ++RF+SKMFLRGDSV+++L++
Sbjct: 90 FWTDI---NNGTK----VTRERFVSKMFLRGDSVVVILKHS 123
>gi|392297783|gb|EIW08882.1| Smd2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 80
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 59/72 (81%), Gaps = 7/72 (9%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+++S++NN +++ RV+AFDRHCNMVLENV+E+WTE K GK +N++RFISK+FL
Sbjct: 14 VIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE--KKGKN-----VINRERFISKLFL 66
Query: 87 RGDSVIIVLRNP 98
RGDSVI+VL+ P
Sbjct: 67 RGDSVIVVLKTP 78
>gi|367016959|ref|XP_003682978.1| hypothetical protein TDEL_0G04000 [Torulaspora delbrueckii]
gi|359750641|emb|CCE93767.1| hypothetical protein TDEL_0G04000 [Torulaspora delbrueckii]
Length = 109
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 63/87 (72%), Gaps = 17/87 (19%)
Query: 22 GPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 71
GPLS++ ++S++NN +++ RV+AFDRHCNMVLENV+E+WTE +G K
Sbjct: 28 GPLSLINDSVVSKTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE----KRGNKA 83
Query: 72 ALPVNKDRFISKMFLRGDSVIIVLRNP 98
NK+RFISK+FLRGDSVI+VL+ P
Sbjct: 84 E---NKERFISKLFLRGDSVIVVLKAP 107
>gi|344232757|gb|EGV64630.1| Sm-like ribonucleo protein [Candida tenuis ATCC 10573]
Length = 137
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 65/88 (73%), Gaps = 13/88 (14%)
Query: 20 NTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGK 69
N GP+S+L ++S +NN +L+ +V+AFDRHCN++LENV+E+WTE K KG
Sbjct: 51 NHGPMSLLKEAVANNTPVVISCRNNHKLVAKVKAFDRHCNLILENVKELWTEPVKNNKG- 109
Query: 70 KKALPVN-KDRFISKMFLRGDSVIIVLR 96
K + VN K+RF+SK+FLRGDSVI+V++
Sbjct: 110 -KVIKVNQKERFVSKLFLRGDSVIVVVK 136
>gi|326472609|gb|EGD96618.1| small nuclear ribonucleoprotein Sm D2 [Trichophyton tonsurans CBS
112818]
gi|326483579|gb|EGE07589.1| small nuclear ribonucleoprotein Sm D2 [Trichophyton equinum CBS
127.97]
Length = 129
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 63/117 (53%), Gaps = 40/117 (34%)
Query: 15 EEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
EE E TGPLS+L ++S +NN +LL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 15 EEHELTTGPLSILQTATRAHSQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE--- 71
Query: 65 TGKGKKKALPVNKDRFISKM--------------------------FLRGDSVIIVL 95
K VNKDRFISKM FLRGDSVI+VL
Sbjct: 72 -KPKGGKGKGVNKDRFISKMYVYTKLARTFPSHRICDNTILTRPSRFLRGDSVILVL 127
>gi|296418693|ref|XP_002838960.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634953|emb|CAZ83151.1| unnamed protein product [Tuber melanosporum]
Length = 96
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/94 (52%), Positives = 59/94 (62%), Gaps = 27/94 (28%)
Query: 12 GKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE 61
+ E+ EF+ GPLS+L ++S +NN +LL RV+AFDRHCNMVLEN R
Sbjct: 18 AELEKYEFSAGPLSILQTAVRSHNQVLISCRNNRKLLARVKAFDRHCNMVLENGR----- 72
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
PVNKDRFISKMFLRGDSVI+VL
Sbjct: 73 ------------PVNKDRFISKMFLRGDSVILVL 94
>gi|385303470|gb|EIF47543.1| small nuclear ribonucleoprotein sm d2 [Dekkera bruxellensis
AWRI1499]
Length = 136
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 62/91 (68%), Gaps = 14/91 (15%)
Query: 15 EEEEFNTGPL----------SVLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
E+ EFN GP+ S +++S++NN +L+ +V+AFDRHCNM+LENVRE W E
Sbjct: 21 EQYEFNHGPMRLLSKAVKDXSTILISLRNNHKLIAKVKAFDRHCNMILENVREFWNETXP 80
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
+ +K + ++RF+ KMFLRGDSVI++L
Sbjct: 81 NDRKRK----IVRERFVLKMFLRGDSVIVIL 107
>gi|50306997|ref|XP_453476.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642610|emb|CAH00572.1| KLLA0D09284p [Kluyveromyces lactis]
Length = 110
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 67/94 (71%), Gaps = 17/94 (18%)
Query: 13 KTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTEL 62
+ EE E GP+S++ ++S++NN +L+ RV++FD+HCNMVLENV+E+WTE
Sbjct: 23 QLEEFEMKYGPMSLIRESMLQRTPVIISLRNNHKLIARVKSFDKHCNMVLENVKEIWTE- 81
Query: 63 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 96
GKK VN++RF++K+FLRGDSVIIV++
Sbjct: 82 --NVNGKK----VNRERFVAKLFLRGDSVIIVVK 109
>gi|403287226|ref|XP_003934853.1| PREDICTED: uncharacterized protein LOC101043343 [Saimiri
boliviensis boliviensis]
Length = 269
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/96 (64%), Positives = 72/96 (75%), Gaps = 11/96 (11%)
Query: 13 KTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTEL 62
K E EEFNTGPLSVL SVKNNTQ LL V+A DRHCNMVLEN EM TE+
Sbjct: 18 KHEGEEFNTGPLSVLTKSVKNNTQGLLNCHSNKKLLDPVKASDRHCNMVLEN-EEMRTEV 76
Query: 63 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
PK+GKGKKK+ PV+KDR+I+KMFL G+ I+VLR+P
Sbjct: 77 PKSGKGKKKSKPVDKDRYIAKMFLCGNWAIVVLRHP 112
>gi|444706234|gb|ELW47583.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 86
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 65/72 (90%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
++++ +NN +LLG V+AF+RHCN+VLEN++EMWTE+PK+GKGKKK+ PVNKD +ISKMFL
Sbjct: 10 VLINCRNNEKLLGHVKAFNRHCNVVLENLKEMWTEVPKSGKGKKKSKPVNKDCYISKMFL 69
Query: 87 RGDSVIIVLRNP 98
GDSVIIVL NP
Sbjct: 70 HGDSVIIVLGNP 81
>gi|327352187|gb|EGE81044.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces dermatitidis
ATCC 18188]
Length = 131
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 60/93 (64%), Gaps = 14/93 (15%)
Query: 15 EEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
EE E +GPLS+L ++S +NN +LL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 26 EEHELTSGPLSILQTATRSHAQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE--- 82
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 97
K VNKDRF+SKM+++ ++ ++ N
Sbjct: 83 -KPKGGKGKGVNKDRFVSKMYVQTNTCLLATGN 114
>gi|116208252|ref|XP_001229935.1| predicted protein [Chaetomium globosum CBS 148.51]
gi|88184016|gb|EAQ91484.1| predicted protein [Chaetomium globosum CBS 148.51]
Length = 103
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 56/83 (67%), Gaps = 12/83 (14%)
Query: 12 GKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE 61
+ E E + GPLS+L ++S+++N +LL RV+AFDRHCNM+LENV+EMWTE
Sbjct: 23 AQLENWEMSNGPLSLLQTAVRSHSQVLISIRSNRKLLARVKAFDRHCNMILENVKEMWTE 82
Query: 62 LPKTGKGKKKALPVNKDRFISKM 84
P KK PVNKDRFISKM
Sbjct: 83 TP--VHNGKKGRPVNKDRFISKM 103
>gi|302652082|ref|XP_003017901.1| small nuclear ribonucleoprotein SmD2, putative [Trichophyton
verrucosum HKI 0517]
gi|291181486|gb|EFE37256.1| small nuclear ribonucleoprotein SmD2, putative [Trichophyton
verrucosum HKI 0517]
Length = 111
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/80 (62%), Positives = 57/80 (71%), Gaps = 14/80 (17%)
Query: 15 EEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
EE E TGPLS+L ++S +NN +LL RV+AFDRHCNMVLENV+EMWTE PK
Sbjct: 36 EEHELTTGPLSILQTATRAHSQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPK 95
Query: 65 TGKGKKKALPVNKDRFISKM 84
GKGK VNKDRFISKM
Sbjct: 96 GGKGKG----VNKDRFISKM 111
>gi|67470740|ref|XP_651333.1| small nuclear ribonucleoprotein Sm D2 [Entamoeba histolytica
HM-1:IMSS]
gi|167383658|ref|XP_001736617.1| small nuclear ribonucleoprotein sm D2 [Entamoeba dispar SAW760]
gi|167391078|ref|XP_001739631.1| small nuclear ribonucleoprotein sm D2 [Entamoeba dispar SAW760]
gi|56468055|gb|EAL45945.1| small nuclear ribonucleoprotein Sm D2, putative [Entamoeba
histolytica HM-1:IMSS]
gi|165896637|gb|EDR23988.1| small nuclear ribonucleoprotein sm D2, putative [Entamoeba dispar
SAW760]
gi|165900902|gb|EDR27123.1| small nuclear ribonucleoprotein sm D2, putative [Entamoeba dispar
SAW760]
gi|407040095|gb|EKE39972.1| LSM domain containing protein [Entamoeba nuttalli P19]
gi|449709579|gb|EMD48820.1| small nuclear ribonucleoprotein sm D2, putative [Entamoeba
histolytica KU27]
Length = 101
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 56/72 (77%), Gaps = 2/72 (2%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
++++ +NN +L+ RV+AFDRH NMVLEN++E+WTE+ + GK KA R ISKMFL
Sbjct: 26 VLINCRNNKKLICRVKAFDRHFNMVLENIKEIWTEMKRDSDGKLKAKLC--QRSISKMFL 83
Query: 87 RGDSVIIVLRNP 98
RGDSVI++++NP
Sbjct: 84 RGDSVIVIVKNP 95
>gi|440292632|gb|ELP85819.1| small nuclear ribonucleoprotein Sm D2, putative [Entamoeba
invadens IP1]
Length = 100
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 57/75 (76%), Gaps = 2/75 (2%)
Query: 25 SVLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM 84
S ++++ +NN +L+ RV+AFDRH NMVLENV+E WTE+ K +GK K P R +SKM
Sbjct: 24 SQVIINCRNNKKLVCRVKAFDRHFNMVLENVKEYWTEMQKMPEGKPK--PKTCHRNVSKM 81
Query: 85 FLRGDSVIIVLRNPK 99
FLRGDSVIIV++ P+
Sbjct: 82 FLRGDSVIIVVKAPE 96
>gi|444729289|gb|ELW69714.1| Deleted in malignant brain tumors 1 protein [Tupaia chinensis]
Length = 1650
Score = 84.3 bits (207), Expect = 8e-15, Method: Composition-based stats.
Identities = 49/74 (66%), Positives = 66/74 (89%)
Query: 24 LSVLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 83
++ ++++ +NN +LLG V+AFDRH NMVLEN++E+WTE+PK+GKGKKK+ PVNKDR+ISK
Sbjct: 1571 ITQVLINCRNNKKLLGHVKAFDRHRNMVLENMKEIWTEVPKSGKGKKKSKPVNKDRYISK 1630
Query: 84 MFLRGDSVIIVLRN 97
MFL GDSVI+VL N
Sbjct: 1631 MFLCGDSVIVVLWN 1644
>gi|145509212|ref|XP_001440550.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124407767|emb|CAK73153.1| unnamed protein product [Paramecium tetraurelia]
Length = 152
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 60/113 (53%), Gaps = 24/113 (21%)
Query: 8 DTTGGKTEEEEFNTGPLSVLMMSVKNNTQL----------LGRVRAFDRHCNMVLENVRE 57
+T EE GP +L +++ +NTQ LGRV+AFDRH NM+LEN+ E
Sbjct: 43 ETQKRTAEEATLEKGPFGLLTITMNHNTQAFLELRNNRKHLGRVKAFDRHMNMILENLTE 102
Query: 58 MWTELPKTGKGKKKALPVNKDR-----------FISKMFLRGDSVIIVLRNPK 99
MW E+ K KGK P K R +I KMFLRGDSVI LRN K
Sbjct: 103 MWIEISKETKGKS---PCYKQRKIQNQYKIIFYYIPKMFLRGDSVIYTLRNLK 152
>gi|320037519|gb|EFW19456.1| small nuclear ribonucleoprotein Sm D2 [Coccidioides posadasii str.
Silveira]
Length = 100
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 51/79 (64%), Gaps = 14/79 (17%)
Query: 15 EEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
EE E TGPLS+L ++S +NN +LL RV+AFDRHCNMVLENV+EMWTE
Sbjct: 26 EEHELTTGPLSILQTATRSHSQVLISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE--- 82
Query: 65 TGKGKKKALPVNKDRFISK 83
K VNKDRF+SK
Sbjct: 83 -KPKGGKGKGVNKDRFVSK 100
>gi|68071819|ref|XP_677823.1| small nuclear ribonucleoprotein [Plasmodium berghei strain ANKA]
gi|56498082|emb|CAH95523.1| small nuclear ribonucleoprotein, putative [Plasmodium berghei]
Length = 101
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/102 (53%), Positives = 66/102 (64%), Gaps = 15/102 (14%)
Query: 10 TGGKTEEEEFN--TGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVRE 57
T TEE N GPL +L VK+N Q LLGRV+AFDRHCN++L VRE
Sbjct: 3 TETPTEENRDNPENGPLGLLSECVKDNAQVLINCRNNRKLLGRVKAFDRHCNLLLTEVRE 62
Query: 58 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
+W E+ K K KKK NKDR+IS +FLRGDSVI++LRNPK
Sbjct: 63 IWVEVIKDKKKKKKI---NKDRYISILFLRGDSVILILRNPK 101
>gi|70942126|ref|XP_741266.1| small nuclear ribonucleoprotein [Plasmodium chabaudi chabaudi]
gi|70945863|ref|XP_742706.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56519539|emb|CAH84536.1| small nuclear ribonucleoprotein, putative [Plasmodium chabaudi
chabaudi]
gi|56521836|emb|CAH78030.1| hypothetical protein PC000715.02.0 [Plasmodium chabaudi chabaudi]
Length = 101
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 61/88 (69%), Gaps = 13/88 (14%)
Query: 22 GPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 71
GPL +L VK+N Q LLGRV+AFDRHCN++L VRE+W E+ K K KKK
Sbjct: 17 GPLGLLSECVKDNAQVLINCRNNRKLLGRVKAFDRHCNLLLTEVREIWVEVVKDKKKKKK 76
Query: 72 ALPVNKDRFISKMFLRGDSVIIVLRNPK 99
NKDR+IS +FLRGDSVI++LRNPK
Sbjct: 77 I---NKDRYISILFLRGDSVILILRNPK 101
>gi|224137176|ref|XP_002327056.1| predicted protein [Populus trichocarpa]
gi|222835371|gb|EEE73806.1| predicted protein [Populus trichocarpa]
Length = 127
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 73/115 (63%), Gaps = 16/115 (13%)
Query: 1 MSRAMDEDTTG--GKTEEEEFNTGPLSVLMMSVKNNTQLL------GRVRAFDRHCNMVL 52
MSRA+++D TG + EEE+F TGPLS LM+S+K NTQ+L ++ A H + L
Sbjct: 1 MSRAIEKDATGREEEEEEEDFGTGPLSFLMISIKRNTQVLINLCNNKKLLAHSHHMVVWL 60
Query: 53 ENVR-------EMWTEL-PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
R + L KTGKG++KA +N++RFISK+FLRGDSVI++L N +
Sbjct: 61 AAGRLYPSCRFHAYALLVEKTGKGEEKARTINRERFISKIFLRGDSVIVILMNQR 115
>gi|313233805|emb|CBY09974.1| unnamed protein product [Oikopleura dioica]
Length = 53
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/49 (79%), Positives = 42/49 (85%), Gaps = 1/49 (2%)
Query: 50 MVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
MVLENV+EMW E PKT KGK PVN+DRFISKMFLRGDSVIIVL+NP
Sbjct: 1 MVLENVKEMWVERPKTSKGKG-GQPVNRDRFISKMFLRGDSVIIVLKNP 48
>gi|82915132|ref|XP_728974.1| small nuclear ribonucleoprotein [Plasmodium yoelii yoelii 17XNL]
gi|23485713|gb|EAA20539.1| small nuclear ribonucleoprotein. [Plasmodium yoelii yoelii]
Length = 101
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/89 (55%), Positives = 60/89 (67%), Gaps = 13/89 (14%)
Query: 21 TGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK 70
GPL +L VK+N Q LLGRV+AFDRHCN++L VRE+W E+ K K KK
Sbjct: 16 NGPLGLLSECVKDNAQVLINCRNNRKLLGRVKAFDRHCNLLLTEVREIWVEIIKDKKKKK 75
Query: 71 KALPVNKDRFISKMFLRGDSVIIVLRNPK 99
K KDR+IS +FLRGDSVI++LRNPK
Sbjct: 76 KIN---KDRYISILFLRGDSVILILRNPK 101
>gi|124801422|ref|XP_001349689.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
gi|3845296|gb|AAC71962.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
Length = 101
Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/88 (55%), Positives = 61/88 (69%), Gaps = 13/88 (14%)
Query: 22 GPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 71
GPL +L VK+N Q +LGRV+AFDRHCN++L VRE+W E+ K K KKK
Sbjct: 17 GPLGLLSECVKDNAQVLINCRNNRKILGRVKAFDRHCNLLLTGVREIWVEVVKDKKKKKK 76
Query: 72 ALPVNKDRFISKMFLRGDSVIIVLRNPK 99
NKDR+IS +FLRGDSVI++LRNPK
Sbjct: 77 I---NKDRYISILFLRGDSVILILRNPK 101
>gi|156093647|ref|XP_001612862.1| small nuclear ribonucleoprotein Sm D2 [Plasmodium vivax Sal-1]
gi|221052951|ref|XP_002257850.1| small nuclear ribonucleoprotein [Plasmodium knowlesi strain H]
gi|148801736|gb|EDL43135.1| small nuclear ribonucleoprotein Sm D2, putative [Plasmodium vivax]
gi|193807682|emb|CAQ38386.1| small nuclear ribonucleoprotein, putative [Plasmodium knowlesi
strain H]
gi|390371035|dbj|GAB64916.1| small nuclear ribonucleoprotein Sm D2 [Plasmodium cynomolgi strain
B]
Length = 101
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/88 (55%), Positives = 60/88 (68%), Gaps = 13/88 (14%)
Query: 22 GPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 71
GPL +L VK+N Q LL RV+AFDRHCN++L VRE+W E+ K K KKK
Sbjct: 17 GPLGLLSECVKDNAQVLINCRNNRKLLARVKAFDRHCNLLLTEVREIWVEVVKDKKKKKK 76
Query: 72 ALPVNKDRFISKMFLRGDSVIIVLRNPK 99
NKDR+IS +FLRGDSVI++LRNPK
Sbjct: 77 I---NKDRYISILFLRGDSVILILRNPK 101
>gi|429327958|gb|AFZ79718.1| hypothetical protein BEWA_025670 [Babesia equi]
Length = 921
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 36/58 (62%), Positives = 47/58 (81%), Gaps = 2/58 (3%)
Query: 41 VRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
V+AFDRHCNM+L + RE+WTE K G GKK+ + KDR +S++FLRGDSVI+VL+NP
Sbjct: 865 VKAFDRHCNMILTDARELWTETVKVG-GKKQRSSI-KDRHLSRVFLRGDSVIVVLKNP 920
>gi|67522691|ref|XP_659406.1| hypothetical protein AN1802.2 [Aspergillus nidulans FGSC A4]
gi|40745811|gb|EAA64967.1| hypothetical protein AN1802.2 [Aspergillus nidulans FGSC A4]
Length = 73
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/49 (73%), Positives = 40/49 (81%), Gaps = 4/49 (8%)
Query: 38 LGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
L RV+AFDRH NMVLENV+EMWTE K GKG+ PVNKDRFISKM+L
Sbjct: 19 LARVKAFDRHSNMVLENVKEMWTEPQKGGKGR----PVNKDRFISKMYL 63
>gi|444720876|gb|ELW61643.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 144
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 55/83 (66%), Gaps = 10/83 (12%)
Query: 26 VLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPV 75
+L S KNNTQ +LG V FDRH MVLENV+ M TE PK GK KKK+ PV
Sbjct: 1 MLTQSAKNNTQELINCFYDKKILGCVETFDRHYTMVLENVKRMRTEFPKNGKDKKKSKPV 60
Query: 76 NKDRFISKMFLRGDSVIIVLRNP 98
NKDR+ISKMFL + I+VL+NP
Sbjct: 61 NKDRYISKMFLHRNVGIVVLQNP 83
>gi|194745332|ref|XP_001955142.1| GF18622 [Drosophila ananassae]
gi|190628179|gb|EDV43703.1| GF18622 [Drosophila ananassae]
Length = 56
Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/49 (89%), Positives = 47/49 (95%)
Query: 50 MVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
MVLENV+EMWTELP+TGKGKKK PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 1 MVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNP 49
>gi|444721316|gb|ELW62058.1| putative small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 165
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 43/57 (75%), Gaps = 1/57 (1%)
Query: 34 NTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 90
N +LLGR +A DR CNMV +NV+E+W E+P++GKGKK PV+KD +S+M L G S
Sbjct: 81 NQKLLGRAKALDRRCNMVPDNVKELWAEVPQSGKGKKSK-PVHKDCHVSRMLLPGLS 136
>gi|164657289|ref|XP_001729771.1| hypothetical protein MGL_3315 [Malassezia globosa CBS 7966]
gi|159103664|gb|EDP42557.1| hypothetical protein MGL_3315 [Malassezia globosa CBS 7966]
Length = 104
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 42/59 (71%), Gaps = 10/59 (16%)
Query: 15 EEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELP 63
E+ E + GPLSVL SV+N++Q LL RV+AFDRH NMVLENV+EMWTE+P
Sbjct: 21 EQYEISQGPLSVLQQSVRNHSQVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEVP 79
>gi|242087889|ref|XP_002439777.1| hypothetical protein SORBIDRAFT_09g019920 [Sorghum bicolor]
gi|241945062|gb|EES18207.1| hypothetical protein SORBIDRAFT_09g019920 [Sorghum bicolor]
Length = 105
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/39 (82%), Positives = 37/39 (94%)
Query: 61 ELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
++PKTGKGKK ALPVNKDRFISK+FLRG+ VIIVLR+PK
Sbjct: 67 QVPKTGKGKKAALPVNKDRFISKIFLRGNRVIIVLRDPK 105
>gi|403272537|ref|XP_003928113.1| PREDICTED: LOW QUALITY PROTEIN: probable small nuclear
ribonucleoprotein Sm D2-like [Saimiri boliviensis
boliviensis]
Length = 221
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 50/81 (61%), Gaps = 11/81 (13%)
Query: 19 FNTGPLSVLMMSVKN----------NTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FN+GPLSVL SVKN N +LLG V AFD HCN VLENV+EM TE+
Sbjct: 24 FNSGPLSVLTQSVKNTPQVLISCSNNKKLLGGVXAFDGHCNAVLENVKEMGTEV-PKSGK 82
Query: 69 KKKALPVNKDRFISKMFLRGD 89
KK+ PVNK R+I MFL D
Sbjct: 83 GKKSKPVNKARYIPGMFLLRD 103
>gi|14596019|gb|AAK68737.1| small nuclear ribonucleoprotein-like protein [Arabidopsis
thaliana]
Length = 135
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/52 (71%), Positives = 39/52 (75%), Gaps = 10/52 (19%)
Query: 1 MSRAMDEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVR 42
MS+ M+EDT GKTEEEEFNTGPLSVLMMSVKNNTQ LLGRVR
Sbjct: 1 MSKPMEEDTNQGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVR 52
>gi|449292825|gb|EMC90804.1| Small nuclear ribonucleoprotein Sm D2 [Columba livia]
Length = 54
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/49 (85%), Positives = 48/49 (97%)
Query: 50 MVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
MVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 1 MVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 49
>gi|330038624|ref|XP_003239651.1| small nuclear ribonucleoprotein SM D2 [Cryptomonas paramecium]
gi|327206575|gb|AEA38753.1| small nuclear ribonucleoprotein SM D2 [Cryptomonas paramecium]
Length = 85
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 7/69 (10%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+++ V+NN +L+G +RAFD+H N++LENVRE+WT + +R+I+KM L
Sbjct: 22 VIIFVRNNRKLVGYIRAFDKHVNLILENVRELWTTCVEKNIFY-------HERYIAKMIL 74
Query: 87 RGDSVIIVL 95
RGDS++++L
Sbjct: 75 RGDSIVLLL 83
>gi|161899517|ref|XP_001712984.1| mRNA splicing factor [Bigelowiella natans]
gi|75756479|gb|ABA27372.1| mRNA splicing factor [Bigelowiella natans]
Length = 101
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Query: 25 SVLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM 84
S +++S +N + G +R FD+HCN++LE+V E+W E + KK + + K++FI K+
Sbjct: 29 SKIIISSNDNHKFYGFIRGFDKHCNLMLEDVTEIWKEETTDARSLKKKVVI-KEKFIPKL 87
Query: 85 FLRGDSVIIV 94
F RGD+VI++
Sbjct: 88 FFRGDAVILI 97
>gi|399949825|gb|AFP65482.1| small nuclear ribonucleoprotein SM D2 [Chroomonas mesostigmatica
CCMP1168]
Length = 85
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 49/70 (70%), Gaps = 6/70 (8%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+M+ ++NN +LLG +RAFDRH N++++N +E+WT K K K K ++F K+ L
Sbjct: 21 VMIFIRNNKKLLGYIRAFDRHMNLIIDNGKEIWTS--KCSKKKVKF----HEKFFPKLVL 74
Query: 87 RGDSVIIVLR 96
RGDS+I+++R
Sbjct: 75 RGDSIILIVR 84
>gi|449017972|dbj|BAM81374.1| similar to Sm protein D2 [Cyanidioschyzon merolae strain 10D]
Length = 332
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 28 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 87
++S ++N +L G +RA+D+H N+++E+VRE+W E + P ++RFIS++F+R
Sbjct: 257 LVSCRHNKKLYGTLRAYDKHFNLIMEHVREIWQE------SQPDRPPDLRERFISRLFVR 310
Query: 88 GDSVIIVLR 96
GD VI ++R
Sbjct: 311 GDGVIFIVR 319
>gi|123414193|ref|XP_001304446.1| Sm protein [Trichomonas vaginalis G3]
gi|121885898|gb|EAX91516.1| Sm protein [Trichomonas vaginalis G3]
Length = 111
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 57/96 (59%), Gaps = 14/96 (14%)
Query: 14 TEEEEFNTGPLSV----------LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELP 63
+E TGP++ L++++++N +L G ++A DRH NM+LE+V E+ T P
Sbjct: 14 SEMTNLQTGPMAPIVKAVYDKEPLLIALRSNRKLYGYIKAVDRHWNMILEHVIEI-TPTP 72
Query: 64 KTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 99
G+ A P+ R I+++FLRGD+VI + NPK
Sbjct: 73 -AKPGQPAAAPIQ--RRINRLFLRGDNVICIYPNPK 105
>gi|165934067|gb|ABY74561.1| small nuclear ribonucleoprotein D2 (predicted) [Callithrix
jacchus]
Length = 53
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/49 (77%), Positives = 45/49 (91%), Gaps = 1/49 (2%)
Query: 50 MVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
MVLENV+EMWTE+PK+GK KK+ PV+KDR+ISKMF RGDSVI+VLRNP
Sbjct: 1 MVLENVKEMWTEVPKSGK-GKKSKPVSKDRYISKMFRRGDSVIVVLRNP 48
>gi|19074769|ref|NP_586275.1| SMALL NUCLEAR RIBONUCLEOPROTEIN D2 [Encephalitozoon cuniculi GB-M1]
gi|19069411|emb|CAD25879.1| SMALL NUCLEAR RIBONUCLEOPROTEIN D2 [Encephalitozoon cuniculi GB-M1]
Length = 135
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 54/83 (65%), Gaps = 11/83 (13%)
Query: 22 GPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 71
GPLS++ ++S+++N ++LGRV A+DRH N+++E+ +E+ T K KG+KK
Sbjct: 20 GPLSLVRRAMVKMKPVLVSLRSNRKVLGRVVAYDRHYNLLMEDAKELGTTRGKN-KGRKK 78
Query: 72 ALPVNKDRFISKMFLRGDSVIIV 94
R + K+F+RGD+VI+V
Sbjct: 79 RQGCEFSRKLGKVFIRGDTVILV 101
>gi|449329925|gb|AGE96193.1| small nuclear ribonucleoprotein d2 [Encephalitozoon cuniculi]
Length = 135
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 54/83 (65%), Gaps = 11/83 (13%)
Query: 22 GPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 71
GPLS++ ++S+++N ++LGRV A+DRH N+++E+ +E+ T K KG+KK
Sbjct: 20 GPLSLVRRAMVKMKPVLVSLRSNRKVLGRVVAYDRHYNLLMEDAKELGTTRGKN-KGRKK 78
Query: 72 ALPVNKDRFISKMFLRGDSVIIV 94
R + K+F+RGD+VI+V
Sbjct: 79 RQGCEFSRKLGKVFIRGDTVILV 101
>gi|303314445|ref|XP_003067231.1| conserved hypothetical protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240106899|gb|EER25086.1| conserved hypothetical protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 44
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/46 (71%), Positives = 36/46 (78%), Gaps = 4/46 (8%)
Query: 50 MVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
MVLENV+EMWTE PK K VNKDRF+SKMFLRGDSVI+VL
Sbjct: 1 MVLENVKEMWTEKPKG----GKGKGVNKDRFVSKMFLRGDSVILVL 42
>gi|401827885|ref|XP_003888235.1| Sm-like ribonucleoprotein subunit D2 [Encephalitozoon hellem ATCC
50504]
gi|392999435|gb|AFM99254.1| Sm-like ribonucleoprotein subunit D2 [Encephalitozoon hellem ATCC
50504]
Length = 128
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 53/83 (63%), Gaps = 11/83 (13%)
Query: 22 GPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 71
GPLS++ ++S++NN +++G+V A+DRH N+++E+ +E+ T K +GKKK
Sbjct: 20 GPLSLVHRAMVKMMPVLVSLRNNRKVVGKVIAYDRHYNLLMEDAKELGTMRGKN-RGKKK 78
Query: 72 ALPVNKDRFISKMFLRGDSVIIV 94
R + +F+RGD+VI+V
Sbjct: 79 RQGCGFSRRLGNVFIRGDTVILV 101
>gi|302408451|ref|XP_003002060.1| small nuclear ribonucleoprotein Sm D2 [Verticillium albo-atrum
VaMs.102]
gi|261358981|gb|EEY21409.1| small nuclear ribonucleoprotein Sm D2 [Verticillium albo-atrum
VaMs.102]
Length = 96
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 12/67 (17%)
Query: 12 GKTEEEEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE 61
+ EE EF+ GPLS+L ++S++NN +LL RV+AFDRHCNM + + + E
Sbjct: 23 AQLEEHEFSAGPLSILQTAVRSHTQVLISIRNNRKLLARVKAFDRHCNMCVPPLHRVSPE 82
Query: 62 L--PKTG 66
P+ G
Sbjct: 83 ASSPRPG 89
>gi|84995764|ref|XP_952604.1| u6 snrna-associated sm-like protein Lsm3 [Theileria annulata
strain Ankara]
gi|65302765|emb|CAI74872.1| u6 snrna-associated sm-like protein Lsm3, putative [Theileria
annulata]
Length = 94
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 85
V+ + KN +L+GR+ AFD HCNMVL +V E T + K + V K R +F
Sbjct: 21 VIYLKCKNGRELVGRLHAFDEHCNMVLSDVTETITTVDADDNSKNETTKVTK-RDNGTIF 79
Query: 86 LRGDSVIIV 94
+RGDS++++
Sbjct: 80 VRGDSLVLL 88
>gi|402077069|gb|EJT72418.1| hypothetical protein GGTG_09284, partial [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 142
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 33/48 (68%), Gaps = 10/48 (20%)
Query: 17 EEFNTGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLEN 54
EF+ GPLS+L ++S++NN +LL RV+AFD HCNMVLEN
Sbjct: 95 HEFSAGPLSILQSAVCSRAQVLISIRNNRKLLARVKAFDYHCNMVLEN 142
>gi|396082353|gb|AFN83963.1| small nuclear ribonucleoprotein D2 [Encephalitozoon romaleae
SJ-2008]
Length = 128
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 56/92 (60%), Gaps = 12/92 (13%)
Query: 14 TEEEEFN-TGPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTEL 62
E+EE GPLS++ ++S++NN +++G+V A+DRH N+++ + +E+ +
Sbjct: 11 NEKEEMEMKGPLSLVHRAMVKAMPVLVSLRNNRKVMGKVIAYDRHYNLLMGDAKEIGN-M 69
Query: 63 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
KGKKK + R + +F+RGD+VI+V
Sbjct: 70 RGRNKGKKKRQGCDFSRRLGNVFIRGDTVILV 101
>gi|303391220|ref|XP_003073840.1| small nuclear ribonucleoprotein D2 [Encephalitozoon intestinalis
ATCC 50506]
gi|303302988|gb|ADM12480.1| small nuclear ribonucleoprotein D2 [Encephalitozoon intestinalis
ATCC 50506]
Length = 136
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 11/83 (13%)
Query: 22 GPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 71
GPLS++ ++S++NN ++ G+V A+DRH N+++ RE T + KG+KK
Sbjct: 20 GPLSLVRRAMVKMIPVLISLRNNRKVTGKVVAYDRHYNLLVREAREFGTARGRN-KGRKK 78
Query: 72 ALPVNKDRFISKMFLRGDSVIIV 94
R + +F+RGD+VI+V
Sbjct: 79 RQGSEFSRKLGNVFIRGDTVILV 101
>gi|442746065|gb|JAA65192.1| Putative small nuclear ribonucleoprotein d2 polypeptide, partial
[Ixodes ricinus]
Length = 131
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 4/56 (7%)
Query: 47 HCNMVLENVREMWTELP-KTGKGKKKALPV-NKDR--FISKMFLRGDSVIIVLRNP 98
+CNM +ENV+EMWTE + + +++ PV KDR +MFLRGDSVI+VL P
Sbjct: 55 YCNMFVENVKEMWTETSNERERYREETNPVRTKDRPTIYQRMFLRGDSVILVLNEP 110
>gi|162606564|ref|XP_001713312.1| small nuclear ribonucleoprotein SM D2 [Guillardia theta]
gi|12580778|emb|CAC27096.1| small nuclear ribonucleoprotein SM D2 [Guillardia theta]
Length = 82
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 48/75 (64%), Gaps = 17/75 (22%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREM------WTELPKTGKGKKKALPVNKDRF 80
+M+ ++NN +++G++ +D+H N++LENV E+ ++EL K K +F
Sbjct: 17 VMIILRNNKRMIGKIINYDKHLNLLLENVNEIKFVGENFSELIKI-----------KSKF 65
Query: 81 ISKMFLRGDSVIIVL 95
I K+FLRGD+++++L
Sbjct: 66 IPKVFLRGDNIVLIL 80
>gi|50546547|ref|XP_500743.1| YALI0B11022p [Yarrowia lipolytica]
gi|49646609|emb|CAG82989.1| YALI0B11022p [Yarrowia lipolytica CLIB122]
Length = 94
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 50/105 (47%), Gaps = 29/105 (27%)
Query: 6 DEDTTGGKTEEEEFNTGPLSVLMMSVKNNT--------QLLGRVRAFDRHCNMVLENVRE 57
D DT+GG PL ++ +S+ N +L G + A+D HC+MVL NV E
Sbjct: 3 DVDTSGGSE--------PLDLIGLSLNENVFVKLRGGRELYGLLHAYDIHCSMVLGNVEE 54
Query: 58 MWTEL----PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
E PK KKK+ +F+RGDSVI+V NP
Sbjct: 55 TVFEYVEGSPKLEARKKKS---------EMLFVRGDSVILVTSNP 90
>gi|399216324|emb|CCF73012.1| unnamed protein product [Babesia microti strain RI]
Length = 93
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 9/71 (12%)
Query: 32 KNNTQLLGRVRAFDRHCNMVLENVRE---MWTELPKTGKGKKKALPVNKDRFISKMFLRG 88
K N ++ G++ A+D HCN++LE+ E + TE P+TG N D +F+RG
Sbjct: 27 KGNREITGKLHAYDEHCNIILEDAVETITVITEDPETGTESTSVNTKNSDV----LFVRG 82
Query: 89 DSVIIVLRNPK 99
DS+I+V +PK
Sbjct: 83 DSIILV--SPK 91
>gi|443924031|gb|ELU43110.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 125
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 31/49 (63%), Gaps = 10/49 (20%)
Query: 13 KTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMV 51
+ EE E + GPLSVL SV+N+TQ LL RV+AFDRH NMV
Sbjct: 66 QLEEHEISQGPLSVLQQSVRNHTQVLISLRNNKKLLARVKAFDRHSNMV 114
>gi|268552449|ref|XP_002634207.1| C. briggsae CBR-LSM-3 protein [Caenorhabditis briggsae]
Length = 102
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 8 DTTGGKTEEEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
+ T T EE + LS+ + + ++N+ +L GR+RAFD+H NMVL V E T +
Sbjct: 7 EVTLSATVEEPLDLLRLSLDEKVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETIT-TRE 65
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+ + + R + +F+RGDSVI+V
Sbjct: 66 VDEDTFEEIYRQSKRVVPMLFVRGDSVILV 95
>gi|341881025|gb|EGT36960.1| hypothetical protein CAEBREN_23318 [Caenorhabditis brenneri]
Length = 102
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 9/80 (11%)
Query: 23 PLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALP 74
PL +L +S+ +N+ +L GR+RAFD+H NMVL +V E T + + + +
Sbjct: 17 PLDLLRLSLDEKVYVKMRNDRELRGRLRAFDQHLNMVLSDVEETITTR-EVDEDTFEEIY 75
Query: 75 VNKDRFISKMFLRGDSVIIV 94
R + +F+RGDSVI+V
Sbjct: 76 RQSKRVVPMLFVRGDSVILV 95
>gi|17543872|ref|NP_502579.1| Protein LSM-3 [Caenorhabditis elegans]
gi|14530659|emb|CAB60606.2| Protein LSM-3 [Caenorhabditis elegans]
Length = 102
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 8 DTTGGKTEEEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
+ T T EE + LS+ + + ++N+ +L GR+RAFD+H NMVL V E T +
Sbjct: 7 EVTLSATVEEPLDLLRLSLDERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETIT-TRE 65
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+ + + R + +F+RGDSVI+V
Sbjct: 66 VDEDTFEEIYKQTKRVVPMLFVRGDSVILV 95
>gi|291239206|ref|XP_002739490.1| PREDICTED: Lsm3 protein-like [Saccoglossus kowalevskii]
Length = 103
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 4 AMDEDTTGGKTEEEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWT 60
A D+D T EE + LS+ + + ++N+ +L GR+ A+D+H NM+L +V E T
Sbjct: 2 ADDQDQVPSNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVT 61
Query: 61 ELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+ + ++ K R I +F+RGD VI+V
Sbjct: 62 TVEIDEETYEEIYKSTK-RNIPMLFVRGDGVILV 94
>gi|156400726|ref|XP_001638943.1| predicted protein [Nematostella vectensis]
gi|156226068|gb|EDO46880.1| predicted protein [Nematostella vectensis]
Length = 102
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N+ +L GR+ A+D+H NM+L +V E T + + ++ NK R + MF+
Sbjct: 28 IYVKMRNDRELRGRLHAYDQHLNMILSDVEETITTVEIDEETFEELFRTNK-RTVPMMFI 86
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 87 RGDGVILV 94
>gi|429327225|gb|AFZ78985.1| U6 small nuclear ribonucleoprotein, putative [Babesia equi]
Length = 93
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 7/77 (9%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTEL---PKTGKGKKKALPVNKDRFIS 82
V+ + K +++GR+ A+D HCNM+L + +E T P T + KK+ V +D
Sbjct: 21 VIYLRCKGGREIVGRLHAYDEHCNMILSDAKETITTAEIEPTTNEEIKKS--VQRDS--G 76
Query: 83 KMFLRGDSVIIVLRNPK 99
+F+RGDS+I++ + +
Sbjct: 77 TVFIRGDSLILLSHHEQ 93
>gi|403221689|dbj|BAM39821.1| U6 snRNA-associated sm-like protein Lsm3 [Theileria orientalis
strain Shintoku]
Length = 93
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTEL---PKTGKGKKKALPVNKDRFIS 82
++ + KN +L+GR+ AFD HCNMVL V E T + P T + K R
Sbjct: 21 MIYLKCKNGRELIGRLHAFDDHCNMVLSEVTETITTVDGEPNTNQQPNKV----TRRDSR 76
Query: 83 KMFLRGDSVIIV 94
+F+RGDS+I++
Sbjct: 77 TVFVRGDSLILL 88
>gi|308492161|ref|XP_003108271.1| CRE-LSM-3 protein [Caenorhabditis remanei]
gi|308249119|gb|EFO93071.1| CRE-LSM-3 protein [Caenorhabditis remanei]
Length = 102
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 8 DTTGGKTEEEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
+ T T EE + LS+ + + ++N+ ++ GR+RAFD+H NMVL V E T +
Sbjct: 7 EVTLSATVEEPIDLLRLSLDERVYVKMRNDREIRGRLRAFDQHLNMVLSEVEETIT-TRE 65
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+ + + R + +F+RGDSVI+V
Sbjct: 66 VDEDTFEEIYRQTKRVVPMLFVRGDSVILV 95
>gi|146098272|ref|XP_001468379.1| small nuclear ribonucleoprotein SmD2 [Leishmania infantum JPCM5]
gi|157875373|ref|XP_001686081.1| small nuclear ribonucleoprotein SmD2 [Leishmania major strain
Friedlin]
gi|398021989|ref|XP_003864157.1| small nuclear ribonucleoprotein SmD2 [Leishmania donovani]
gi|401428184|ref|XP_003878575.1| small nuclear ribonucleoprotein SmD2 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|68129154|emb|CAJ06890.1| small nuclear ribonucleoprotein SmD2 [Leishmania major strain
Friedlin]
gi|134072746|emb|CAM71463.1| small nuclear ribonucleoprotein SmD2 [Leishmania infantum JPCM5]
gi|322494823|emb|CBZ30127.1| small nuclear ribonucleoprotein SmD2 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322502391|emb|CBZ37475.1| small nuclear ribonucleoprotein SmD2 [Leishmania donovani]
Length = 103
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 20/87 (22%)
Query: 22 GPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 71
GP S+L + +N+ LL V AFD+H N+VL+ V+E+ TE G ++
Sbjct: 27 GPFSLLDTAMKEKKRVFIQCRNSKALLAHVIAFDKHFNLVLKGVQEI-TE----SHGSEQ 81
Query: 72 ALPVNKDRFISKMFLRGDSVIIVLRNP 98
K R I +FLRG+SVI +++ P
Sbjct: 82 -----KQRTIENLFLRGESVIFIVKLP 103
>gi|256085603|ref|XP_002579006.1| snrnp sm protein [Schistosoma mansoni]
gi|353230199|emb|CCD76370.1| putative snrnp sm protein [Schistosoma mansoni]
Length = 103
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 6 DEDTTGGKTEEEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTEL 62
DED EE + LS+ + + +K N +L G + AFD H NM+L NV E T L
Sbjct: 7 DEDVEQPVLVEEPLDLIRLSLDEKIYVKMKRNRELRGVLHAFDSHLNMILGNVEETVTTL 66
Query: 63 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+ ++ K R I +F+RGD VI+V
Sbjct: 67 EIDEETYEEVYKTTK-RTIPMLFIRGDGVILV 97
>gi|443924030|gb|ELU43109.1| hypothetical protein AG1IA_02870 [Rhizoctonia solani AG-1 IA]
Length = 50
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 26/36 (72%), Gaps = 4/36 (11%)
Query: 58 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVII 93
MWTE K GK VNKDRFISKMFLRGDSVI+
Sbjct: 1 MWTETQKGKNGK----TVNKDRFISKMFLRGDSVIL 32
>gi|154344332|ref|XP_001568110.1| small nuclear ribonucleoprotein SmD2 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065444|emb|CAM40878.1| small nuclear ribonucleoprotein SmD2 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 103
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 20/87 (22%)
Query: 22 GPLSVLMMSVK----------NNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 71
GP S+L S+K N+ LL V AFD+H N+VL+ V+E+ TE G ++
Sbjct: 27 GPFSLLDTSMKENKRVFIQCRNSKALLAHVIAFDKHFNLVLKGVQEI-TE----SHGSEQ 81
Query: 72 ALPVNKDRFISKMFLRGDSVIIVLRNP 98
K R I +FLRG+SV+ +++ P
Sbjct: 82 -----KQRTIENLFLRGESVVFIVKLP 103
>gi|148908265|gb|ABR17247.1| unknown [Picea sitchensis]
Length = 97
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 52/89 (58%), Gaps = 9/89 (10%)
Query: 14 TEEEEFNTGPLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKT 65
TEE+ PL ++ +S+ +++ +L G++ A+D+H NM+L +V E+ T +
Sbjct: 3 TEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVITTVEID 62
Query: 66 GKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+ ++ + +K R + +F+RGD VI+V
Sbjct: 63 DETYEEIVKTSK-RVVPYLFVRGDGVILV 90
>gi|67484430|ref|XP_657435.1| U6 snRNA-associated Sm-like protein LSm3 [Entamoeba histolytica
HM-1:IMSS]
gi|56474688|gb|EAL52049.1| U6 snRNA-associated Sm-like protein LSm3, putative [Entamoeba
histolytica HM-1:IMSS]
gi|449702203|gb|EMD42886.1| U6 snrnaassociated Sm family LSm3 protein [Entamoeba histolytica
KU27]
Length = 78
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 27/90 (30%)
Query: 13 KTEEEEFNTGPLSVLMMSVKNNT--------QLLGRVRAFDRHCNMVLENVREMWTELPK 64
KT+ EE P+ ++ +S+ +N +L G++RAFD+H N++L NV EM+ E
Sbjct: 3 KTQIEE----PIDLIKLSLDDNVFIKLRGGRKLKGKLRAFDQHLNIILTNVSEMYQE--- 55
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
K + PV +++RGD VI++
Sbjct: 56 ----KTRTFPV--------LYIRGDLVILI 73
>gi|19112539|ref|NP_595747.1| U6 snRNP-associated protein Lsm3 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|10720084|sp|Q9Y7M4.2|LSM3_SCHPO RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm3
gi|6942158|emb|CAB42366.2| U6 snRNP-associated protein Lsm3 (predicted) [Schizosaccharomyces
pombe]
Length = 93
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 85
++ + ++ + +L GR+ A+D H NMVL + E+ T K KAL + + +F
Sbjct: 21 IVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHY-EMLF 79
Query: 86 LRGDSVIIV 94
+RGDSVI++
Sbjct: 80 VRGDSVILI 88
>gi|226469802|emb|CAX70182.1| small nuclear ribonucleoprotein [Schistosoma japonicum]
gi|226469804|emb|CAX70183.1| small nuclear ribonucleoprotein [Schistosoma japonicum]
gi|226487552|emb|CAX74646.1| small nuclear ribonucleoprotein [Schistosoma japonicum]
Length = 105
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + +K N +L G + AFD H NM+L NV E T L + ++ K R I +F+
Sbjct: 33 IYVKMKRNRELRGILHAFDSHLNMILGNVEETVTTLEIDEETYEEVYKTTK-RTIPMLFI 91
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 92 RGDGVILV 99
>gi|196003100|ref|XP_002111417.1| hypothetical protein TRIADDRAFT_23866 [Trichoplax adhaerens]
gi|190585316|gb|EDV25384.1| hypothetical protein TRIADDRAFT_23866 [Trichoplax adhaerens]
Length = 104
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 56/94 (59%), Gaps = 6/94 (6%)
Query: 4 AMDEDTTGGKTEEEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWT 60
A +E+T+ T EE + LS+ +++ ++N+ +L GR+ A+D+H NMVL +V E T
Sbjct: 5 ATNEETSN--TVEEPLDLVRLSLDERILVKMRNDRELRGRLHAYDQHLNMVLGDVEETIT 62
Query: 61 ELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+ + ++ +K R I +++RGD VI+V
Sbjct: 63 TVEIDDETFEELYKTSK-RQIPMLYVRGDGVILV 95
>gi|351724771|ref|NP_001236557.1| uncharacterized protein LOC100306547 [Glycine max]
gi|255628849|gb|ACU14769.1| unknown [Glycine max]
Length = 97
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 51/89 (57%), Gaps = 9/89 (10%)
Query: 14 TEEEEFNTGPLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKT 65
TEEE PL ++ +S+ +++ +L G++ A+D+H NM+L +V E+ T +
Sbjct: 3 TEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIITTVEID 62
Query: 66 GKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+ ++ + K R + +F+RGD VI+V
Sbjct: 63 DETYEEIVRTTK-RTVPFLFVRGDGVILV 90
>gi|387593780|gb|EIJ88804.1| hypothetical protein NEQG_00623 [Nematocida parisii ERTm3]
gi|387595086|gb|EIJ92712.1| hypothetical protein NEPG_02403 [Nematocida parisii ERTm1]
Length = 91
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 41/66 (62%)
Query: 29 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 88
++VK N +++G + D+H N++L + E T+LP KGKK+ + R + +F+RG
Sbjct: 22 VTVKGNREVVGTMELTDKHMNVLLRDAVETRTQLPSMLKGKKRQIKKVFTRTLGNVFIRG 81
Query: 89 DSVIIV 94
++VI +
Sbjct: 82 ETVIAI 87
>gi|357475053|ref|XP_003607812.1| U6 snRNA-associated Sm-like protein LSm3 [Medicago truncatula]
gi|355508867|gb|AES90009.1| U6 snRNA-associated Sm-like protein LSm3 [Medicago truncatula]
Length = 98
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 51/89 (57%), Gaps = 9/89 (10%)
Query: 14 TEEEEFNTGPLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKT 65
TEEE PL ++ +S+ +++ +L G++ A+D+H NM+L +V E+ T +
Sbjct: 4 TEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEID 63
Query: 66 GKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+ ++ + K R + +F+RGD VI+V
Sbjct: 64 DETYEEIVRTTK-RTVPFLFVRGDGVILV 91
>gi|71417383|ref|XP_810555.1| small nuclear ribonucleoprotein SmD2 [Trypanosoma cruzi strain CL
Brener]
gi|70875103|gb|EAN88704.1| small nuclear ribonucleoprotein SmD2, putative [Trypanosoma cruzi]
Length = 111
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 26/112 (23%)
Query: 2 SRAMDEDTTGGKTEEEEF-----NTGPLSVLMMSVKNNTQ----------LLGRVRAFDR 46
++ + ++ K +EF + GP SVL +++N T+ L+ V AFD+
Sbjct: 7 TKTLRTESGAKKVSSKEFLKTTVSEGPFSVLDSAMRNGTRVFIQSRFNKSLVATVVAFDK 66
Query: 47 HCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
H N+VL +V EL K + K+R I MFLRG SV+ +++ P
Sbjct: 67 HFNLVLRDV----VELAMVNKQQ-------KERSIRNMFLRGGSVVFIVKLP 107
>gi|350536047|ref|NP_001232226.1| putative sm like protein U6 snRNA-associated Sm-like protein
[Taeniopygia guttata]
gi|50754429|ref|XP_414380.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Gallus
gallus]
gi|327265982|ref|XP_003217786.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like [Anolis
carolinensis]
gi|197127206|gb|ACH43704.1| putative sm like protein U6 snRNA-associated Sm-like protein
[Taeniopygia guttata]
Length = 102
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 15/102 (14%)
Query: 1 MSRAMDEDTTGGKTEEEEFNTGPLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVL 52
M+ +D+ T EE PL ++ +S+ +N+ +L GR+ A+D+H NM+L
Sbjct: 1 MADEVDQQQTTNTVEE------PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMIL 54
Query: 53 ENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+V E T + + ++ K R I +F+RGD V++V
Sbjct: 55 GDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDGVVLV 95
>gi|384252623|gb|EIE26099.1| Sm-like ribonucleo protein [Coccomyxa subellipsoidea C-169]
Length = 95
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++ + +L GR+ A+D+H NM+L V E T + + ++ + NK R + +F+
Sbjct: 23 IYVKLRGDRELRGRLHAYDQHLNMILGEVEETITSIEIDDETYEEIIKTNK-RAVPFLFV 81
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 82 RGDGVILV 89
>gi|351722343|ref|NP_001235961.1| uncharacterized protein LOC100499782 [Glycine max]
gi|255626487|gb|ACU13588.1| unknown [Glycine max]
Length = 97
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 51/89 (57%), Gaps = 9/89 (10%)
Query: 14 TEEEEFNTGPLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKT 65
TEEE PL ++ +S+ +++ +L G++ A+D+H NM+L +V E+ T +
Sbjct: 3 TEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEID 62
Query: 66 GKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+ ++ + K R + +F+RGD VI+V
Sbjct: 63 DETYEEIVRTTK-RTVPFLFVRGDGVILV 90
>gi|353234582|emb|CCA66606.1| probable LSM3-U6 snRNA-associated Sm-like protein [Piriformospora
indica DSM 11827]
Length = 94
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 16 EEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 72
+E F+ LS+ +M+ ++ + QL G + A+D H NM+L +V E + +G K +
Sbjct: 8 QEPFDLIRLSLSERVMVKLRGDRQLSGVLHAYDGHMNMILSDVEETVMIVDPVPEGVKPS 67
Query: 73 LPVNKDRFISKMFLRGDSVIIV 94
+ V K R I +++RGD VI+V
Sbjct: 68 IRVAK-RQIEMLYVRGDGVILV 88
>gi|198433468|ref|XP_002128408.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm3
[Ciona intestinalis]
Length = 105
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 7/97 (7%)
Query: 4 AMDED---TTGGKTEEEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVRE 57
A DED +T EE + LS+ + + ++N +L GR+ A+D+H NMVL V E
Sbjct: 2 ADDEDQQQAPASQTVEEPLDLIRLSLDERVYVKMRNERELRGRLHAYDQHLNMVLGEVEE 61
Query: 58 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
T + + ++ K R I +F+RGD VI+V
Sbjct: 62 TVTAVEIDEETYEEIYKQTK-RTIPMLFVRGDGVILV 97
>gi|315042007|ref|XP_003170380.1| hypothetical protein MGYG_07624 [Arthroderma gypseum CBS 118893]
gi|327298847|ref|XP_003234117.1| U6 small nuclear ribonucleoprotein [Trichophyton rubrum CBS
118892]
gi|311345414|gb|EFR04617.1| hypothetical protein MGYG_07624 [Arthroderma gypseum CBS 118893]
gi|326464295|gb|EGD89748.1| U6 small nuclear ribonucleoprotein [Trichophyton rubrum CBS
118892]
Length = 100
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 85
V+ + ++ + +L GR+ A+D HCN+VL +V E + + G++ + K +F
Sbjct: 27 VVFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYIVEEDEAGEETIKTIKKQE--EMLF 84
Query: 86 LRGDSVIIV 94
+RGDSV+++
Sbjct: 85 VRGDSVVLI 93
>gi|326483593|gb|EGE07603.1| hypothetical protein TEQG_06517 [Trichophyton equinum CBS 127.97]
Length = 100
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 85
V+ + ++ + +L GR+ A+D HCN+VL +V E + + G++ + K +F
Sbjct: 27 VVFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYIVEENEAGEETIKTIKKQE--EMLF 84
Query: 86 LRGDSVIIV 94
+RGDSV+++
Sbjct: 85 VRGDSVVLI 93
>gi|225717088|gb|ACO14390.1| U6 snRNA-associated Sm-like protein LSm3 [Esox lucius]
Length = 102
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 15/102 (14%)
Query: 1 MSRAMDEDTTGGKTEEEEFNTGPLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVL 52
M+ +++ TT EE PL ++ +S+ +N+ +L GR+ A+D+H NM+L
Sbjct: 1 MADEVEQQTTTNTVEE------PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMIL 54
Query: 53 ENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+V E T + + ++ K R I +F+RGD V++V
Sbjct: 55 GDVEETVTTVEIDEETYEEIYKSTK-RNIPMLFVRGDGVVLV 95
>gi|7657315|ref|NP_055278.1| U6 snRNA-associated Sm-like protein LSm3 [Homo sapiens]
gi|13385806|ref|NP_080585.1| U6 snRNA-associated Sm-like protein LSm3 [Mus musculus]
gi|82697405|ref|NP_001032564.1| U6 snRNA-associated Sm-like protein LSm3 [Bos taurus]
gi|157819827|ref|NP_001100081.1| U6 snRNA-associated Sm-like protein LSm3 [Rattus norvegicus]
gi|349732213|ref|NP_001231857.1| LSM3 homolog, U6 small nuclear RNA associated [Sus scrofa]
gi|386780796|ref|NP_001248293.1| U6 snRNA-associated Sm-like protein LSm3 [Macaca mulatta]
gi|73984534|ref|XP_849275.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 isoform 1
[Canis lupus familiaris]
gi|73984536|ref|XP_858392.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 isoform 2
[Canis lupus familiaris]
gi|114585529|ref|XP_001157526.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 isoform 1
[Pan troglodytes]
gi|291393472|ref|XP_002713225.1| PREDICTED: Lsm3 protein [Oryctolagus cuniculus]
gi|291396667|ref|XP_002714873.1| PREDICTED: Lsm3 protein [Oryctolagus cuniculus]
gi|296225915|ref|XP_002758699.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Callithrix jacchus]
gi|297670014|ref|XP_002813175.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Pongo
abelii]
gi|301770625|ref|XP_002920730.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like
[Ailuropoda melanoleuca]
gi|332231761|ref|XP_003265063.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 isoform 1
[Nomascus leucogenys]
gi|338714585|ref|XP_003363113.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like [Equus
caballus]
gi|344275971|ref|XP_003409784.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Loxodonta africana]
gi|348554867|ref|XP_003463246.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Cavia
porcellus]
gi|354465501|ref|XP_003495218.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Cricetulus griseus]
gi|395847186|ref|XP_003796264.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Otolemur
garnettii]
gi|397511859|ref|XP_003826280.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Pan
paniscus]
gi|402887020|ref|XP_003906905.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Papio
anubis]
gi|403268321|ref|XP_003926225.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Saimiri
boliviensis boliviensis]
gi|410951784|ref|XP_003982573.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Felis catus]
gi|426249725|ref|XP_004018600.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Ovis aries]
gi|426339551|ref|XP_004033712.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Gorilla
gorilla gorilla]
gi|55977170|sp|P62311.2|LSM3_MOUSE RecName: Full=U6 snRNA-associated Sm-like protein LSm3
gi|61227725|sp|P62310.2|LSM3_HUMAN RecName: Full=U6 snRNA-associated Sm-like protein LSm3
gi|115311781|sp|Q32PE9.3|LSM3_BOVIN RecName: Full=U6 snRNA-associated Sm-like protein LSm3
gi|5919147|gb|AAD56227.1|AF182289_1 U6 snRNA-associated Sm-like protein LSm3 [Homo sapiens]
gi|10197636|gb|AAG14954.1|AF182418_1 MDS017 [Homo sapiens]
gi|5262856|emb|CAB45866.1| Lsm3 protein [Homo sapiens]
gi|12833592|dbj|BAB22585.1| unnamed protein product [Mus musculus]
gi|12841666|dbj|BAB25303.1| unnamed protein product [Mus musculus]
gi|13937895|gb|AAH07055.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|32484176|gb|AAH54368.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|38566272|gb|AAH62875.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|48146487|emb|CAG33466.1| LSM3 [Homo sapiens]
gi|81294362|gb|AAI08143.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Bos taurus]
gi|119584594|gb|EAW64190.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|148666888|gb|EDK99304.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|149036753|gb|EDL91371.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
(predicted) [Rattus norvegicus]
gi|169144524|gb|ACA49102.1| LSM3-like protein [Ailuropoda melanoleuca]
gi|208966680|dbj|BAG73354.1| LSM3 homolog, U6 small nuclear RNA associated [synthetic
construct]
gi|296474665|tpg|DAA16780.1| TPA: U6 snRNA-associated Sm-like protein LSm3 [Bos taurus]
gi|355564515|gb|EHH21015.1| hypothetical protein EGK_03987 [Macaca mulatta]
gi|355732826|gb|AES10821.1| LSM3-like protein, U6 small nuclear RNA associated [Mustela
putorius furo]
gi|355786357|gb|EHH66540.1| hypothetical protein EGM_03552 [Macaca fascicularis]
gi|380811798|gb|AFE77774.1| U6 snRNA-associated Sm-like protein LSm3 [Macaca mulatta]
gi|410207716|gb|JAA01077.1| LSM3 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410248718|gb|JAA12326.1| LSM3 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410291826|gb|JAA24513.1| LSM3 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|417395685|gb|JAA44891.1| Putative small nuclear ribonucleoprotein snrnp lsm3 [Desmodus
rotundus]
gi|431916913|gb|ELK16669.1| U6 snRNA-associated Sm-like protein LSm3 [Pteropus alecto]
Length = 102
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 15/102 (14%)
Query: 1 MSRAMDEDTTGGKTEEEEFNTGPLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVL 52
M+ +D+ T EE PL ++ +S+ +N+ +L GR+ A+D+H NM+L
Sbjct: 1 MADDVDQQQTTNTVEE------PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMIL 54
Query: 53 ENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+V E T + + ++ K R I +F+RGD V++V
Sbjct: 55 GDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDGVVLV 95
>gi|255583342|ref|XP_002532432.1| snrnp sm protein, putative [Ricinus communis]
gi|223527852|gb|EEF29947.1| snrnp sm protein, putative [Ricinus communis]
Length = 97
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 51/89 (57%), Gaps = 9/89 (10%)
Query: 14 TEEEEFNTGPLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKT 65
TEEE PL ++ +S+ +++ +L G++ A+D+H NM+L +V E+ T +
Sbjct: 3 TEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEID 62
Query: 66 GKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+ ++ + K R + +F+RGD VI+V
Sbjct: 63 DETYEEIVRTTK-RTVPFLFVRGDGVILV 90
>gi|71406106|ref|XP_805619.1| small nuclear ribonucleoprotein SmD2 [Trypanosoma cruzi strain CL
Brener]
gi|70869094|gb|EAN83768.1| small nuclear ribonucleoprotein SmD2, putative [Trypanosoma cruzi]
Length = 111
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 26/112 (23%)
Query: 2 SRAMDEDTTGGKTEEEEF-----NTGPLSVLMMSVKNNTQ----------LLGRVRAFDR 46
++ + ++ K +EF + GP SVL +++N T+ L+ V AFD+
Sbjct: 7 TKTLRTESGAKKVSSKEFLKTTVSEGPFSVLDSAMRNGTRVFIQSRFNKSLVATVVAFDK 66
Query: 47 HCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
H N+VL +V EL K + K+R I MFLRG SV+ +++ P
Sbjct: 67 HFNLVLRDV----VELAMVNKEQ-------KERSIRNMFLRGGSVVFIVKLP 107
>gi|407038130|gb|EKE38950.1| LSM domain containing protein [Entamoeba nuttalli P19]
Length = 78
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 27/90 (30%)
Query: 13 KTEEEEFNTGPLSVLMMSVKNNT--------QLLGRVRAFDRHCNMVLENVREMWTELPK 64
KT+ EE P+ ++ +S+ +N +L G++RAFD+H N++L NV E++ E
Sbjct: 3 KTQIEE----PIDLIKLSLDDNVFIKLRGGRKLKGKLRAFDQHLNIILTNVSEIYQE--- 55
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
K + PV +++RGD VI++
Sbjct: 56 ----KTRTFPV--------LYIRGDLVILI 73
>gi|72008835|ref|XP_786272.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Strongylocentrotus purpuratus]
Length = 105
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N+ +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+
Sbjct: 30 IYVKMRNDRELKGRLHAYDQHLNMILGDVEETVTAVEIDEETYEEIYKSTK-RSIQMLFV 88
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 89 RGDGVILV 96
>gi|426334164|ref|XP_004028631.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Gorilla gorilla gorilla]
Length = 55
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 33/46 (71%), Gaps = 3/46 (6%)
Query: 50 MVLENVREMWTELPKTGKGKKKAL---PVNKDRFISKMFLRGDSVI 92
MVL+NV+EM TE+PK KG K P NKDRFISK+FL DSVI
Sbjct: 1 MVLKNVKEMCTEVPKGDKGGKGKKKSKPANKDRFISKLFLSRDSVI 46
>gi|340370917|ref|XP_003383992.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like
[Amphimedon queenslandica]
Length = 105
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
L + ++N+ +L GR+ FD+H NM++ V E T L + ++ + R I +F+
Sbjct: 29 LYVKMRNDRELTGRLHGFDQHLNMIMSEVEETVTTLELDEETFEEIYRTTQ-RTIPMIFI 87
Query: 87 RGDSVIIVLRNP 98
RGD VI++ +P
Sbjct: 88 RGDGVILISPSP 99
>gi|71051464|gb|AAH14600.1| LOC645339 protein [Homo sapiens]
Length = 55
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 32/46 (69%), Gaps = 3/46 (6%)
Query: 50 MVLENVREMWTELPKTGKGKKKAL---PVNKDRFISKMFLRGDSVI 92
MVLENV+EM TE+PK G G K P NKD FISK+FL DSVI
Sbjct: 1 MVLENVKEMCTEVPKGGNGGKGKKKSKPANKDHFISKLFLCRDSVI 46
>gi|326498435|dbj|BAJ98645.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326513560|dbj|BAJ87799.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 101
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++++ +L G++ A+D+H NM+L +V E+ T + + ++ + +K R I +F+
Sbjct: 28 IYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTSIEIDDETYEEIVRTSK-RTIPYLFV 86
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 87 RGDGVILV 94
>gi|339240555|ref|XP_003376203.1| putative LSM domain protein [Trichinella spiralis]
gi|316975093|gb|EFV58552.1| putative LSM domain protein [Trichinella spiralis]
Length = 109
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + +++N +L GR+ A+D+H NMVL +V E+ T + + ++ N R +F+
Sbjct: 30 IFVKLRSNRELRGRLHAYDQHLNMVLGDVEEIETIVEIDDETYEEVYTKNT-RTFPMLFI 88
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 89 RGDGVILV 96
>gi|332373734|gb|AEE62008.1| unknown [Dendroctonus ponderosae]
Length = 101
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N+ +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+
Sbjct: 28 IYVKMRNDRELKGRLHAYDQHMNMILSDVEETITTVEIDEETYEEVYKSTK-RNIPMLFV 86
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 87 RGDGVILV 94
>gi|226443270|ref|NP_001139841.1| U6 snRNA-associated Sm-like protein LSm3 [Salmo salar]
gi|221219250|gb|ACM08286.1| U6 snRNA-associated Sm-like protein LSm3 [Salmo salar]
gi|221219990|gb|ACM08656.1| U6 snRNA-associated Sm-like protein LSm3 [Salmo salar]
gi|221221030|gb|ACM09176.1| U6 snRNA-associated Sm-like protein LSm3 [Salmo salar]
Length = 102
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 15/102 (14%)
Query: 1 MSRAMDEDTTGGKTEEEEFNTGPLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVL 52
M+ +++ TT EE PL ++ +S+ +N+ +L GR+ A+D+H NM+L
Sbjct: 1 MADEVEQQTTTNTVEE------PLDLIRLSLDERIYVKMRNDRELRGRLNAYDQHLNMIL 54
Query: 53 ENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+V E T + + ++ K R I +F+RGD V++V
Sbjct: 55 GDVEETVTTVEIDEETYEEIYKSTK-RNIPMLFVRGDGVVLV 95
>gi|241171152|ref|XP_002410602.1| snrnp sm protein, putative [Ixodes scapularis]
gi|215494871|gb|EEC04512.1| snrnp sm protein, putative [Ixodes scapularis]
Length = 102
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+
Sbjct: 28 IYVKMRNERELRGRLHAYDQHLNMILGDVEETVTSVEIDEETYEEVYKSTK-RSIPMLFV 86
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 87 RGDGVILV 94
>gi|302755206|ref|XP_002961027.1| hypothetical protein SELMODRAFT_8958 [Selaginella moellendorffii]
gi|302767128|ref|XP_002966984.1| hypothetical protein SELMODRAFT_8957 [Selaginella moellendorffii]
gi|300164975|gb|EFJ31583.1| hypothetical protein SELMODRAFT_8957 [Selaginella moellendorffii]
gi|300171966|gb|EFJ38566.1| hypothetical protein SELMODRAFT_8958 [Selaginella moellendorffii]
Length = 94
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 29 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD-RFISKMFLR 87
+++++ QL+G+ AFDRH N VL + E PK G GK++ +D R + + LR
Sbjct: 19 VTIQDGRQLVGKFMAFDRHMNFVLGDTEEFRRLPPKKGAGKQQGGEEREDRRTLGLILLR 78
Query: 88 GDSVI 92
G+ V+
Sbjct: 79 GEEVV 83
>gi|126336227|ref|XP_001366562.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform
1 [Monodelphis domestica]
gi|149636433|ref|XP_001506609.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Ornithorhynchus anatinus]
Length = 102
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 15/102 (14%)
Query: 1 MSRAMDEDTTGGKTEEEEFNTGPLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVL 52
M+ D+ T EE PL ++ +S+ +N+ +L GR+ A+D+H NM+L
Sbjct: 1 MADDADQQQTTNTVEE------PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMIL 54
Query: 53 ENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+V E T + + ++ K R I +F+RGD V++V
Sbjct: 55 GDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDGVVLV 95
>gi|390981129|pdb|4EMG|A Chain A, Crystal Structure Of Splsm3
gi|390981130|pdb|4EMG|B Chain B, Crystal Structure Of Splsm3
gi|390981131|pdb|4EMG|C Chain C, Crystal Structure Of Splsm3
gi|390981132|pdb|4EMG|D Chain D, Crystal Structure Of Splsm3
gi|390981133|pdb|4EMG|E Chain E, Crystal Structure Of Splsm3
gi|390981134|pdb|4EMG|F Chain F, Crystal Structure Of Splsm3
gi|390981135|pdb|4EMG|G Chain G, Crystal Structure Of Splsm3
gi|390981136|pdb|4EMG|H Chain H, Crystal Structure Of Splsm3
gi|390981137|pdb|4EMG|I Chain I, Crystal Structure Of Splsm3
gi|390981138|pdb|4EMG|J Chain J, Crystal Structure Of Splsm3
gi|390981139|pdb|4EMG|K Chain K, Crystal Structure Of Splsm3
gi|390981140|pdb|4EMG|L Chain L, Crystal Structure Of Splsm3
gi|390981141|pdb|4EMG|M Chain M, Crystal Structure Of Splsm3
gi|390981142|pdb|4EMG|N Chain N, Crystal Structure Of Splsm3
Length = 93
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 85
++ + ++ + +L GR+ A+D H N VL + E+ T K KAL + + +F
Sbjct: 21 IVYVKLRGDRELNGRLHAYDEHLNXVLGDAEEIVTIFDDEETDKDKALKTIRKHY-EXLF 79
Query: 86 LRGDSVIIV 94
+RGDSVI++
Sbjct: 80 VRGDSVILI 88
>gi|15223768|ref|NP_177812.1| U6 snRNA-associated Sm-like protein LSm3 [Arabidopsis thaliana]
gi|12322228|gb|AAG51149.1|AC079283_6 Sm-like protein [Arabidopsis thaliana]
gi|21592388|gb|AAM64339.1| Sm-like protein [Arabidopsis thaliana]
gi|98961019|gb|ABF58993.1| At1g76860 [Arabidopsis thaliana]
gi|332197775|gb|AEE35896.1| U6 snRNA-associated Sm-like protein LSm3 [Arabidopsis thaliana]
Length = 98
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 9/88 (10%)
Query: 15 EEEEFNTGPLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTG 66
EEE PL ++ +S+ +++ +L G++ AFD+H NM+L +V E T +
Sbjct: 4 EEEATVREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEIDD 63
Query: 67 KGKKKALPVNKDRFISKMFLRGDSVIIV 94
+ ++ + K R I +F+RGD VI+V
Sbjct: 64 ETYEEIVRTTK-RTIEFLFVRGDGVILV 90
>gi|195144968|ref|XP_002013468.1| GL23390 [Drosophila persimilis]
gi|198477437|ref|XP_002136616.1| GA29226 [Drosophila pseudoobscura pseudoobscura]
gi|194102411|gb|EDW24454.1| GL23390 [Drosophila persimilis]
gi|198142908|gb|EDY71620.1| GA29226 [Drosophila pseudoobscura pseudoobscura]
Length = 103
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 15/95 (15%)
Query: 14 TEEEEFNT------GPLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVLENVREMW 59
TEEE+ + PL ++ +S+ +N +L GR+ AFD+H NMVL + E
Sbjct: 3 TEEEQLSQVILPVKEPLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETV 62
Query: 60 TELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
T + + ++ K R I +F+RGD VI+V
Sbjct: 63 TTVEIDEETYEEVYKTTK-RTIPMLFVRGDGVILV 96
>gi|296005050|ref|XP_002808862.1| lsm3 homologue, putative [Plasmodium falciparum 3D7]
gi|225632259|emb|CAX64140.1| lsm3 homologue, putative [Plasmodium falciparum 3D7]
Length = 91
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFISKMF 85
+ + K + +L+G++ A+D H NM+L NVRE + K + V K +R + +F
Sbjct: 22 IFLKCKGDRELIGKLDAYDNHLNMILSNVRETY----KYSVKENDEETVKKMERNLDMVF 77
Query: 86 LRGDSVIIV 94
+RGDS+I+V
Sbjct: 78 VRGDSIILV 86
>gi|170029969|ref|XP_001842863.1| snrnp sm protein [Culex quinquefasciatus]
gi|167865323|gb|EDS28706.1| snrnp sm protein [Culex quinquefasciatus]
Length = 101
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N +L GR+ AFD+H NMVL + E T + + ++ +K R I +F+
Sbjct: 27 IYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTSK-RTIPMLFV 85
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 86 RGDGVILV 93
>gi|156544005|ref|XP_001607844.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Nasonia
vitripennis]
Length = 103
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N +L GR+ A+D+H NMVL V E T + + ++ K R I +F+
Sbjct: 28 IYVKMRNERELRGRLHAYDQHLNMVLGEVEETVTTIEIDEETYEEVYRTTK-RTIPMLFV 86
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 87 RGDGVILV 94
>gi|425767040|gb|EKV05625.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Penicillium
digitatum Pd1]
gi|425780202|gb|EKV18219.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Penicillium
digitatum PHI26]
Length = 96
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 6 DEDTTGGKTEEEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTEL 62
D + TGG + E + LS+ + + ++ + +L GR+ A+D HCN+VL +V E +
Sbjct: 3 DSEDTGGPSVSEPLDLVRLSLDETVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVV 62
Query: 63 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+ ++ + K +F+RGDSV+++
Sbjct: 63 EEDENEEETLRTIKKQE--EMLFVRGDSVVLI 92
>gi|225707460|gb|ACO09576.1| U6 snRNA-associated Sm-like protein LSm3 [Osmerus mordax]
Length = 104
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 7 EDTTGGKTEEEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELP 63
E T EE + LS+ + + ++N+ +L GR+ A+D+H NM+L +V E T +
Sbjct: 8 EQQQSSNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTV- 66
Query: 64 KTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+ + + L + R I +F+RGD V++V
Sbjct: 67 EIDEETYEELYKSTKRNIPMLFVRGDGVVLV 97
>gi|260822318|ref|XP_002606549.1| hypothetical protein BRAFLDRAFT_247418 [Branchiostoma floridae]
gi|229291892|gb|EEN62559.1| hypothetical protein BRAFLDRAFT_247418 [Branchiostoma floridae]
Length = 98
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N+ +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+
Sbjct: 23 IYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETYEEIYKTTK-RNIPMLFV 81
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 82 RGDGVILV 89
>gi|307178237|gb|EFN67022.1| U6 snRNA-associated Sm-like protein LSm3 [Camponotus floridanus]
Length = 98
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N +L G++ AFD+H NMVL +V E+ + + + + + K R I +F+
Sbjct: 28 IYVKMRNERELRGKLHAFDQHLNMVLGDVEEIIN-IVEIDEETYEEIYRQKKRTIQMLFV 86
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 87 RGDGVILV 94
>gi|402086284|gb|EJT81182.1| hypothetical protein GGTG_01166 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 95
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 85
V+ + ++ + +L GR+ A+D HCN+VL +V E + + K + R + +F
Sbjct: 23 VVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETHYMQDEEDEADLKTVS----RKLEMLF 78
Query: 86 LRGDSVIIV 94
+RGDSV+++
Sbjct: 79 VRGDSVVLI 87
>gi|157123813|ref|XP_001653925.1| snrnp sm protein [Aedes aegypti]
gi|108874209|gb|EAT38434.1| AAEL009671-PA [Aedes aegypti]
Length = 101
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N +L GR+ AFD+H NMVL + E T + + ++ K R I +F+
Sbjct: 27 IYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTTK-RTIPMLFV 85
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 86 RGDGVILV 93
>gi|149235353|ref|XP_001523555.1| hypothetical protein LELG_05401 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452964|gb|EDK47220.1| hypothetical protein LELG_05401 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 90
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 19/91 (20%)
Query: 13 KTEEEEFNTGPLSVL--------MMSVKNNTQLLGRVRAFDRHCNMVLENVRE-MWTELP 63
KTE ++ PL ++ ++ ++ +L G+++ +D HCNMVL + E ++ + P
Sbjct: 5 KTEHQQLQE-PLDLIRFQLDDYVVVKLRGARELYGKLQGYDSHCNMVLSDATETIYGDSP 63
Query: 64 KTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
T KKK +F+RGDSVI++
Sbjct: 64 DTKPVKKKT---------DMVFVRGDSVILI 85
>gi|294886769|ref|XP_002771844.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|239875644|gb|EER03660.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|302372346|gb|ADL28384.1| putative Sm-like RNA-binding protein [Perkinsus marinus ATCC
50439]
Length = 92
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 16 EEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 72
+E F LS+ + + + + L GR+ A+D H NMVL V E+ P +G K
Sbjct: 8 DEPFELVKLSLDERIQVKCRGDRYLRGRLVAYDSHLNMVLSEVEEVIE--PPVKEGVKHR 65
Query: 73 LPVNKDRFISKMFLRGDSVIIVLRNP 98
P+ +D + +F+RGD +I+V NP
Sbjct: 66 RPIRRD--LDTIFVRGDGIILV--NP 87
>gi|189053316|dbj|BAG35122.1| unnamed protein product [Homo sapiens]
Length = 102
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 1 MSRAMDEDTTGGKTEEEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVRE 57
M+ +D+ T T EE + LS+ + + ++N+ +L GR+ A+D+H NM+L +V E
Sbjct: 1 MADDVDQQQTTN-TVEEPLDPIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
Query: 58 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
T + + ++ K R I +F+RGD V++V
Sbjct: 60 TVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDGVVLV 95
>gi|289742031|gb|ADD19763.1| small nuclear ribonucleoprotein LsM3 [Glossina morsitans
morsitans]
Length = 102
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N +L GR+ AFD+H NMVL + E T + + ++ K R I +F+
Sbjct: 29 VYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTTK-RTIPMLFV 87
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 88 RGDGVILV 95
>gi|313247586|emb|CBY15769.1| unnamed protein product [Oikopleura dioica]
Length = 103
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 23 PLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALP 74
PL +L +S+ +N +L GR+ AFD+H NM+L +V E T + + ++
Sbjct: 19 PLDLLRLSLDERIFVKLRNERELTGRLHAFDQHLNMILGDVEETVTNVEIDDETYEEIYR 78
Query: 75 VNKDRFISKMFLRGDSVIIV 94
K R I +F+RGD VI+V
Sbjct: 79 QVK-RSIPMLFVRGDGVILV 97
>gi|324523019|gb|ADY48176.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324523877|gb|ADY48319.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324527206|gb|ADY48760.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324527733|gb|ADY48837.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324528368|gb|ADY48905.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324528673|gb|ADY48938.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
Length = 105
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N+ ++ GR+ AFD+H NM+L V E T + + + + + R I +F+
Sbjct: 32 IYVKMRNDREVRGRLHAFDQHLNMILSQVEETVTTV-ELDEENFEEMHKQTKRHIPMLFV 90
Query: 87 RGDSVIIV 94
RGD++I+V
Sbjct: 91 RGDAIILV 98
>gi|15218164|ref|NP_173542.1| U6 snRNA-associated Sm-like protein [Arabidopsis thaliana]
gi|8920641|gb|AAF81363.1|AC036104_12 Contains similarity to Lsm3 protein from Homo sapiens gb|AJ238095
and contains a conserved Sm protein PF|01423 motif. EST
gb|AI998441 comes from this gene [Arabidopsis thaliana]
gi|12248017|gb|AAG50100.1|AF334722_1 unknown protein [Arabidopsis thaliana]
gi|332191952|gb|AEE30073.1| U6 snRNA-associated Sm-like protein [Arabidopsis thaliana]
Length = 97
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 9/88 (10%)
Query: 15 EEEEFNTGPLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTG 66
EE+ PL ++ +S+ +++ +L G++ AFD+H NM+L +V E+ T +
Sbjct: 4 EEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEIDD 63
Query: 67 KGKKKALPVNKDRFISKMFLRGDSVIIV 94
+ ++ + K R + +F+RGD VI+V
Sbjct: 64 ETYEEIVRTTK-RTVPFLFVRGDGVILV 90
>gi|390178194|ref|XP_002137483.2| GA30187 [Drosophila pseudoobscura pseudoobscura]
gi|388859360|gb|EDY68041.2| GA30187 [Drosophila pseudoobscura pseudoobscura]
Length = 100
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N +L GR+ AFD+H NMVL + E T + + ++ K R I +F+
Sbjct: 27 VYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTTK-RTIPMLFV 85
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 86 RGDGVILV 93
>gi|168005030|ref|XP_001755214.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693807|gb|EDQ80158.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 97
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 51/89 (57%), Gaps = 9/89 (10%)
Query: 14 TEEEEFNTGPLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKT 65
TEE+ PL ++ +S+ +++ +L G++ A+D+H NM+L V E+ T +
Sbjct: 3 TEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGEVEEVTTSVEID 62
Query: 66 GKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+ ++ + ++ R + +F+RGD VI+V
Sbjct: 63 DETYEEIVRTSR-RTVPYLFVRGDGVILV 90
>gi|140832760|gb|AAI35705.1| LOC100125161 protein [Xenopus (Silurana) tropicalis]
Length = 100
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N+ +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+
Sbjct: 27 IYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFV 85
Query: 87 RGDSVIIV 94
RGD V++V
Sbjct: 86 RGDGVVLV 93
>gi|110743008|dbj|BAE99397.1| hypothetical protein [Arabidopsis thaliana]
Length = 96
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 9/88 (10%)
Query: 15 EEEEFNTGPLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTG 66
EE+ PL ++ +S+ +++ +L G++ AFD+H NM+L +V E+ T +
Sbjct: 3 EEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEIDD 62
Query: 67 KGKKKALPVNKDRFISKMFLRGDSVIIV 94
+ ++ + K R + +F+RGD VI+V
Sbjct: 63 ETYEEIVRTTK-RTVPFLFVRGDGVILV 89
>gi|297842449|ref|XP_002889106.1| hypothetical protein ARALYDRAFT_895567 [Arabidopsis lyrata subsp.
lyrata]
gi|297334947|gb|EFH65365.1| hypothetical protein ARALYDRAFT_895567 [Arabidopsis lyrata subsp.
lyrata]
Length = 98
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++++ +L G++ AFD+H NM+L +V E T + + ++ + K R I +F+
Sbjct: 24 IYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEIDDETYEEIVRTTK-RTIEFLFV 82
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 83 RGDGVILV 90
>gi|288683438|ref|NP_001165758.1| LSM3 homolog, U6 small nuclear RNA associated [Xenopus (Silurana)
tropicalis]
gi|161612120|gb|AAI56008.1| Unknown (protein for MGC:185368) [Xenopus (Silurana) tropicalis]
Length = 102
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N+ +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+
Sbjct: 29 IYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFV 87
Query: 87 RGDSVIIV 94
RGD V++V
Sbjct: 88 RGDGVVLV 95
>gi|389629744|ref|XP_003712525.1| hypothetical protein MGG_16841 [Magnaporthe oryzae 70-15]
gi|351644857|gb|EHA52718.1| hypothetical protein MGG_16841 [Magnaporthe oryzae 70-15]
gi|440488450|gb|ELQ68177.1| hypothetical protein OOW_P131scaffold00266g63 [Magnaporthe oryzae
P131]
Length = 95
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 85
V+ + ++ + +L GR+ A+D HCN+VL +V E + + + K + R + +F
Sbjct: 23 VVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETHYIQDEDDESELKTVS----RKLEMLF 78
Query: 86 LRGDSVIIV 94
+RGDSV+++
Sbjct: 79 VRGDSVVMI 87
>gi|410930335|ref|XP_003978554.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Takifugu rubripes]
gi|47206420|emb|CAF94178.1| unnamed protein product [Tetraodon nigroviridis]
Length = 102
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 7 EDTTGGKTEEEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELP 63
E T EE + LS+ + + ++N+ +L GR+ A+D+H NM+L +V E T +
Sbjct: 6 EQQPATNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTV- 64
Query: 64 KTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+ + + L + R I +F+RGD V++V
Sbjct: 65 EIDEETYEELYKSTKRNIPMLFVRGDGVVLV 95
>gi|432858806|ref|XP_004068948.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Oryzias
latipes]
Length = 102
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N+ +L GR+ A+D+H NM+L +V E T + + + + L + R I +F+
Sbjct: 29 IYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTV-EIDEETYEELYKSTKRNIPMLFV 87
Query: 87 RGDSVIIV 94
RGD V++V
Sbjct: 88 RGDGVVLV 95
>gi|307104511|gb|EFN52764.1| hypothetical protein CHLNCDRAFT_26410 [Chlorella variabilis]
Length = 99
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 11/92 (11%)
Query: 14 TEEEEFNTGPLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVLENVREMWTEL--- 62
EEE PL ++ +S+ K +L G++ A+D+H NM+L +V E T +
Sbjct: 2 AEEENTVREPLDLIRLSLDEKVYVKLKGERELRGKLHAYDQHLNMILGDVEETVTSVEID 61
Query: 63 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+T + KA + R + +F+RGD VI+V
Sbjct: 62 EETFEEIIKASEGDSSRMVPYLFVRGDGVILV 93
>gi|388493932|gb|AFK35032.1| unknown [Lotus japonicus]
gi|388511495|gb|AFK43809.1| unknown [Lotus japonicus]
Length = 97
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 50/89 (56%), Gaps = 9/89 (10%)
Query: 14 TEEEEFNTGPLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKT 65
EEE PL ++ +S+ +++ +L G++ A+D+H NM+L +V E+ T +
Sbjct: 3 AEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEID 62
Query: 66 GKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+ ++ + K R + +F+RGD VI+V
Sbjct: 63 DETYEEIVRTTK-RTVPFLFVRGDGVILV 90
>gi|348514181|ref|XP_003444619.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Oreochromis niloticus]
gi|348520372|ref|XP_003447702.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Oreochromis niloticus]
Length = 102
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N+ +L GR+ A+D+H NM+L +V E T + + + + L + R I +F+
Sbjct: 29 IYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTV-EIDEETYEELYKSTKRNIPMLFV 87
Query: 87 RGDSVIIV 94
RGD V++V
Sbjct: 88 RGDGVVLV 95
>gi|290989375|ref|XP_002677313.1| predicted protein [Naegleria gruberi]
gi|284090920|gb|EFC44569.1| predicted protein [Naegleria gruberi]
Length = 95
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 29 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 88
+ +K + +L G + A+D+H NMVL NV E E+ + ++ + + R I +FLRG
Sbjct: 23 IKLKGDRELRGTLHAYDQHLNMVLGNVEETIHEIDIDKETNEQQMK-STTRKIGMLFLRG 81
Query: 89 DSVIIVL 95
D VI+V+
Sbjct: 82 DGVILVV 88
>gi|110755468|ref|XP_001121255.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like [Apis
mellifera]
gi|340729056|ref|XP_003402825.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform
1 [Bombus terrestris]
gi|340729058|ref|XP_003402826.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform
2 [Bombus terrestris]
gi|350401475|ref|XP_003486164.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Bombus
impatiens]
gi|380013750|ref|XP_003690912.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Apis
florea]
Length = 103
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N +L GR+ A+D+H NMVL E T + + ++ K R IS +F+
Sbjct: 28 IYVKMRNERELRGRLHAYDQHLNMVLGEAEETVTTVEIDEETYEEVYRTTK-RNISMLFV 86
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 87 RGDGVILV 94
>gi|66804949|ref|XP_636207.1| hypothetical protein DDB_G0289453 [Dictyostelium discoideum AX4]
gi|74852215|sp|Q54HH8.1|SMDL_DICDI RecName: Full=Small nuclear ribonucleoprotein Sm D-like protein
gi|60464569|gb|EAL62706.1| hypothetical protein DDB_G0289453 [Dictyostelium discoideum AX4]
Length = 257
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 18/107 (16%)
Query: 6 DEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQL--------------LGRVRAFDRHCNMV 51
+ED K +F GPLS+L ++++ +++ G + AFD+H N++
Sbjct: 149 NEDHKILKNISNKFTDGPLSLLKRALESKSKIKVMIRGTNCIRGYCRGYIIAFDKHMNII 208
Query: 52 LENVREMWT---ELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
L +V E + LP T + P K R+ ++F++GD+V+ V+
Sbjct: 209 LRDVEEEYDLLKSLPSTRNQNQPIQPKIK-RYYGQLFIKGDTVVSVI 254
>gi|332021459|gb|EGI61827.1| U6 snRNA-associated Sm-like protein LSm3 [Acromyrmex echinatior]
Length = 125
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N +L G++ AFD+H NMVL +V E+ + + + + + K R I +F+
Sbjct: 55 IYVKMRNERELRGKLHAFDQHLNMVLGDVEEIIN-IVEIDEETYEEIYRQKKRTIQMLFV 113
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 114 RGDGVILV 121
>gi|391337947|ref|XP_003743325.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Metaseiulus occidentalis]
Length = 103
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N +L GR+ A+D+H NMVL +V E T + + ++ ++ R I +F+
Sbjct: 29 IYVKMRNERELRGRLHAYDQHLNMVLGDVEETVTSVEIDEETFEEVYKTSR-RSIPMLFV 87
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 88 RGDGVILV 95
>gi|383857174|ref|XP_003704080.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Megachile rotundata]
Length = 103
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N +L GR+ A+D+H NMVL E T + + ++ K R IS +F+
Sbjct: 28 IYVKMRNERELRGRLHAYDQHLNMVLGEAEETVTTVEIDEETYEEVYRTTK-RNISMLFV 86
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 87 RGDGVILV 94
>gi|302855073|ref|XP_002959037.1| hypothetical protein VOLCADRAFT_108433 [Volvox carteri f.
nagariensis]
gi|300255603|gb|EFJ39898.1| hypothetical protein VOLCADRAFT_108433 [Volvox carteri f.
nagariensis]
Length = 97
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++ +L GR+ A+D+H NM+L V E T + + ++ + K R I +F+
Sbjct: 25 IYVKLRGERELRGRLHAYDQHLNMILGEVEETLTTVEIDDETYEEIIKTQK-RVIPFLFV 83
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 84 RGDGVILV 91
>gi|297850550|ref|XP_002893156.1| hypothetical protein ARALYDRAFT_472357 [Arabidopsis lyrata subsp.
lyrata]
gi|297338998|gb|EFH69415.1| hypothetical protein ARALYDRAFT_472357 [Arabidopsis lyrata subsp.
lyrata]
Length = 98
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 9/88 (10%)
Query: 15 EEEEFNTGPLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTG 66
EE+ PL ++ +S+ +++ +L G++ AFD+H NM+L +V E+ T +
Sbjct: 4 EEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTVEIDD 63
Query: 67 KGKKKALPVNKDRFISKMFLRGDSVIIV 94
+ ++ + K R + +F+RGD VI+V
Sbjct: 64 ETYEEIVRTTK-RTVPFLFVRGDGVILV 90
>gi|281344332|gb|EFB19916.1| hypothetical protein PANDA_009501 [Ailuropoda melanoleuca]
gi|351695767|gb|EHA98685.1| U6 snRNA-associated Sm-like protein LSm3, partial [Heterocephalus
glaber]
gi|440903568|gb|ELR54207.1| U6 snRNA-associated Sm-like protein LSm3, partial [Bos grunniens
mutus]
Length = 96
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N+ +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+
Sbjct: 23 IYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFV 81
Query: 87 RGDSVIIV 94
RGD V++V
Sbjct: 82 RGDGVVLV 89
>gi|225713042|gb|ACO12367.1| U6 snRNA-associated Sm-like protein LSm3 [Lepeophtheirus
salmonis]
Length = 105
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Query: 1 MSRAMDEDTTGGK-TEEEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVR 56
M+ D+ G T EE + LS+ + + ++N +L GR+ A+D+H NM+L V
Sbjct: 1 MAEDPDQANAGAALTVEEPLDLIRLSLDERIYVKMRNERELKGRLNAYDQHLNMILGEVE 60
Query: 57 EMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
E T + + ++ K R I +F+RGD VI+V
Sbjct: 61 ETVTSIEIDEETYEEVYRTTK-RNIPMLFVRGDGVILV 97
>gi|449276686|gb|EMC85118.1| U6 snRNA-associated Sm-like protein LSm3, partial [Columba livia]
Length = 95
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N+ +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+
Sbjct: 22 IYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFV 80
Query: 87 RGDSVIIV 94
RGD V++V
Sbjct: 81 RGDGVVLV 88
>gi|326678810|ref|XP_003201179.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform
1 [Danio rerio]
gi|326678812|ref|XP_003201180.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform
2 [Danio rerio]
Length = 102
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N+ +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+
Sbjct: 29 IYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETYEEIYKSTK-RNIPMLFV 87
Query: 87 RGDSVIIV 94
RGD V++V
Sbjct: 88 RGDGVVLV 95
>gi|24649486|ref|NP_732931.1| LSm3, isoform A [Drosophila melanogaster]
gi|281362412|ref|NP_001163707.1| LSm3, isoform B [Drosophila melanogaster]
gi|23172108|gb|AAN13967.1| LSm3, isoform A [Drosophila melanogaster]
gi|189181823|gb|ACD81688.1| FI09213p [Drosophila melanogaster]
gi|272477132|gb|ACZ95002.1| LSm3, isoform B [Drosophila melanogaster]
Length = 103
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N +L GR+ AFD+H NMVL + E T + + ++ K R I +F+
Sbjct: 30 VYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTAK-RTIPMLFV 88
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 89 RGDGVILV 96
>gi|25012398|gb|AAN71307.1| RE11655p [Drosophila melanogaster]
Length = 103
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N +L GR+ AFD+H NMVL + E T + + ++ K R I +F+
Sbjct: 30 VYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTAK-RTIPMLFV 88
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 89 RGDGVILV 96
>gi|345787463|ref|XP_003432927.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Canis
lupus familiaris]
Length = 102
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 15/102 (14%)
Query: 1 MSRAMDEDTTGGKTEEEEFNTGPLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVL 52
M+ MD+ T EE PL ++ +S+ +N+ +L GR+ A+D+H NM+L
Sbjct: 1 MADNMDQQQTTNTVEE------PLDLIRLSLDERIYVKLRNDRELRGRLHAYDQHLNMIL 54
Query: 53 ENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+V E T + + ++ K R I +F+ GD V++V
Sbjct: 55 GDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFVWGDCVVLV 95
>gi|242009034|ref|XP_002425298.1| snrnp sm protein, putative [Pediculus humanus corporis]
gi|212509063|gb|EEB12560.1| snrnp sm protein, putative [Pediculus humanus corporis]
Length = 102
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N +L GR+ A+D+H NMVL + E T + + ++ K R I +F+
Sbjct: 28 IYVKMRNERELRGRLHAYDQHLNMVLGDAEETVTTVEIDEETYEEVYKTTK-RTIPMLFV 86
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 87 RGDGVILV 94
>gi|242059351|ref|XP_002458821.1| hypothetical protein SORBIDRAFT_03g040930 [Sorghum bicolor]
gi|194699902|gb|ACF84035.1| unknown [Zea mays]
gi|195628156|gb|ACG35908.1| U6 snRNA-associated Sm-like protein LSm3 [Zea mays]
gi|195643108|gb|ACG41022.1| U6 snRNA-associated Sm-like protein LSm3 [Zea mays]
gi|241930796|gb|EES03941.1| hypothetical protein SORBIDRAFT_03g040930 [Sorghum bicolor]
Length = 98
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 9/91 (9%)
Query: 12 GKTEEEEFNTGPLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVLENVREMWTELP 63
EEE PL ++ +S+ +++ +L G++ A+D+H NM+L +V E+ T +
Sbjct: 2 AAAEEEIAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 61
Query: 64 KTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+ ++ + K R I +F+RGD VI+V
Sbjct: 62 IDDETYEEIVRTTK-RTIPFLFVRGDGVILV 91
>gi|367051210|ref|XP_003655984.1| hypothetical protein THITE_2146609 [Thielavia terrestris NRRL
8126]
gi|347003248|gb|AEO69648.1| hypothetical protein THITE_2146609 [Thielavia terrestris NRRL
8126]
Length = 98
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 85
V+ + ++ + +L GR+ A+D HCN+VL +V E + + + K V+K +F
Sbjct: 25 VVCVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIVDEDDDEEVKLQTVSKKS--EMLF 82
Query: 86 LRGDSVIIV 94
+RGDSV+++
Sbjct: 83 VRGDSVVLI 91
>gi|167518686|ref|XP_001743683.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777645|gb|EDQ91261.1| predicted protein [Monosiga brevicollis MX1]
Length = 93
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 12 GKTEEEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
G++ EE + LS+ +++ ++ + QL G + A+D+H NMVL NV E + +
Sbjct: 3 GRSVEEPLDLVRLSLEEKVLVKMRGDRQLEGTLHAYDQHMNMVLSNVVETLATVDVDDET 62
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIV 94
++ + K R + +++RGD VI+V
Sbjct: 63 GEELVKTAK-RVLPMLYVRGDGVILV 87
>gi|147903851|ref|NP_001091408.1| LSM3 homolog, U6 small nuclear RNA associated [Xenopus laevis]
gi|126631439|gb|AAI33265.1| LOC100049097 protein [Xenopus laevis]
Length = 102
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N+ +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+
Sbjct: 29 IYVKMRNDRELRGRLNAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFV 87
Query: 87 RGDSVIIV 94
RGD V++V
Sbjct: 88 RGDGVVLV 95
>gi|449497088|ref|XP_004160308.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Cucumis
sativus]
Length = 97
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 51/89 (57%), Gaps = 9/89 (10%)
Query: 14 TEEEEFNTGPLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKT 65
TEEE PL ++ +S+ +++ +L G++ A+D+H NM+L +V E T +
Sbjct: 3 TEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVEID 62
Query: 66 GKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+ ++ + ++ R + +F+RGD VI+V
Sbjct: 63 DETYEEIVRTSR-RTVPFLFVRGDGVILV 90
>gi|345571011|gb|EGX53826.1| hypothetical protein AOL_s00004g485 [Arthrobotrys oligospora ATCC
24927]
Length = 93
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 85
V+ + ++ + +L GR+ A+D HCN+VL V E + + + + N + +F
Sbjct: 25 VVFVKLRGDRELRGRLHAYDSHCNLVLGEVEETIYVVDEDDDDTIRTVKKNSE----MLF 80
Query: 86 LRGDSVIIV 94
+RGDSV+I+
Sbjct: 81 VRGDSVVII 89
>gi|224062892|ref|XP_002300922.1| predicted protein [Populus trichocarpa]
gi|222842648|gb|EEE80195.1| predicted protein [Populus trichocarpa]
Length = 97
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 51/89 (57%), Gaps = 9/89 (10%)
Query: 14 TEEEEFNTGPLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKT 65
+EEE PL ++ +S+ +++ +L G++ A+D+H NM+L +V E+ T +
Sbjct: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEID 62
Query: 66 GKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+ ++ + + R + +F+RGD VI+V
Sbjct: 63 DETYEEIVRATR-RTVPFLFVRGDGVILV 90
>gi|387914480|gb|AFK10849.1| LSM3-like protein [Callorhinchus milii]
gi|392883596|gb|AFM90630.1| LSM3-like protein, U6 small nuclear RNA associated [Callorhinchus
milii]
gi|392883672|gb|AFM90668.1| LSM3-like protein, U6 small nuclear RNA associated [Callorhinchus
milii]
gi|392884122|gb|AFM90893.1| LSM3-like protein, U6 small nuclear RNA associated [Callorhinchus
milii]
Length = 102
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N+ +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+
Sbjct: 29 IYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETYEEIYKSTK-RNIPMLFV 87
Query: 87 RGDSVIIV 94
RGD V++V
Sbjct: 88 RGDGVVLV 95
>gi|326928055|ref|XP_003210200.1| PREDICTED: LOW QUALITY PROTEIN: u6 snRNA-associated Sm-like protein
LSm3-like [Meleagris gallopavo]
Length = 108
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N+ +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+
Sbjct: 35 IYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFV 93
Query: 87 RGDSVIIV 94
RGD V++V
Sbjct: 94 RGDGVVLV 101
>gi|440294421|gb|ELP87438.1| snrnp sm protein, putative [Entamoeba invadens IP1]
Length = 79
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 15/69 (21%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 85
V+++ ++ N QL G++RAFD+H N+VL TE+ +T + PV ++
Sbjct: 20 VVLVKLRGNRQLKGKLRAFDQHLNLVL-------TEVTETYNSVSRDFPV--------LY 64
Query: 86 LRGDSVIIV 94
+RGD V+IV
Sbjct: 65 IRGDLVVIV 73
>gi|440801404|gb|ELR22424.1| LSM Smlike protein family member, putative [Acanthamoeba
castellanii str. Neff]
Length = 103
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 8 DTTGGKTEEEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
D G T EE + LS+ + + ++ +L G++ A+D+H NMVL +V E T +
Sbjct: 8 DVQLGSTVEEPLDLIRLSLDDRIYVKLRGERELRGKLHAYDQHLNMVLGDVEETVTTVEM 67
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+ ++ + K R + +F+RGD VI+V
Sbjct: 68 DEETDEEIIKRRK-RTVEMLFVRGDGVILV 96
>gi|323456789|gb|EGB12655.1| hypothetical protein AURANDRAFT_60633 [Aureococcus anophagefferens]
Length = 779
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 5/61 (8%)
Query: 38 LGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 97
+G ++AFDRH N+VL + E T +P + +A PV RF+ ++ +RGD+V++V R
Sbjct: 184 VGLLKAFDRHMNLVLVDAAE--TTVPPM-RNPDRARPVT--RFLKQVLIRGDNVVLVCRA 238
Query: 98 P 98
P
Sbjct: 239 P 239
>gi|407927498|gb|EKG20390.1| hypothetical protein MPH_02316 [Macrophomina phaseolina MS6]
Length = 99
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 85
V+ + ++ + +L GR+ A+D HCN+VL +V E + + ++ V K +F
Sbjct: 27 VVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDANEEEVVRTVKKQS--EMLF 84
Query: 86 LRGDSVIIV 94
+RGDSV+++
Sbjct: 85 VRGDSVVLI 93
>gi|225713400|gb|ACO12546.1| U6 snRNA-associated Sm-like protein LSm3 [Lepeophtheirus
salmonis]
Length = 105
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Query: 1 MSRAMDEDTTGGK-TEEEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVR 56
M+ D+ G T EE + LS+ + + ++N +L GR+ A+D+H NM+L V
Sbjct: 1 MAEDPDQANAGAALTVEEPLDLIRLSLDERIYVKMRNERELKGRLNAYDQHLNMILGEVA 60
Query: 57 EMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
E T + + ++ K R I +F+RGD VI+V
Sbjct: 61 ETVTSIEIDEETYEEVYRTTK-RNIPMLFVRGDGVILV 97
>gi|357615889|gb|EHJ69888.1| LSM Sm-like protein family member [Danaus plexippus]
Length = 102
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N +L G++ A+D+H NMVL + E T + + ++ NK R I +F+
Sbjct: 28 IYVKMRNERELRGKLHAYDQHLNMVLGDAEETITTVEIDEETYEEVYRTNK-RNIPMLFV 86
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 87 RGDGVILV 94
>gi|307206257|gb|EFN84322.1| U6 snRNA-associated Sm-like protein LSm3 [Harpegnathos saltator]
Length = 96
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N +L GR+ A+D+H NMVL E T + + ++ K R IS +F+
Sbjct: 21 IYVKMRNERELRGRLHAYDQHLNMVLGEAEETVTTVEIDEETYEEVYRTTK-RNISMLFV 79
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 80 RGDGVILV 87
>gi|356501499|ref|XP_003519562.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Glycine max]
Length = 282
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 29 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD--RFISKMFL 86
+++++ QL+G+ AFDRH N+VL + E + +LP KGKK A +++ R + + L
Sbjct: 19 VTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKKPAEGADREDRRTLGLVLL 76
Query: 87 RGDSVI 92
RG+ VI
Sbjct: 77 RGEEVI 82
>gi|224085111|ref|XP_002307496.1| predicted protein [Populus trichocarpa]
gi|359493111|ref|XP_002266320.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like isoform
1 [Vitis vinifera]
gi|222856945|gb|EEE94492.1| predicted protein [Populus trichocarpa]
Length = 97
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 51/89 (57%), Gaps = 9/89 (10%)
Query: 14 TEEEEFNTGPLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKT 65
+EEE PL ++ +S+ +++ +L G++ A+D+H NM+L +V E+ T +
Sbjct: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEID 62
Query: 66 GKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+ ++ + + R + +F+RGD VI+V
Sbjct: 63 DETYEEIVRTTR-RTVPFLFVRGDGVILV 90
>gi|332262690|ref|XP_003280392.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Nomascus leucogenys]
Length = 102
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 15/102 (14%)
Query: 1 MSRAMDEDTTGGKTEEEEFNTGPLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVL 52
M+ +D+ T EE PL ++ +S+ +N+ +L GR+ A+D+H NM+L
Sbjct: 1 MADDVDQQQTTNTVEE------PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMIL 54
Query: 53 ENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+V E T + +T + + + + R I +F+ GD V++V
Sbjct: 55 GDVEETVTTI-ETDEETYEEIYKSTKRNIPMLFVWGDGVVLV 95
>gi|159479600|ref|XP_001697878.1| Sm protein [Chlamydomonas reinhardtii]
gi|158273976|gb|EDO99761.1| Sm protein [Chlamydomonas reinhardtii]
Length = 97
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++ +L GR+ A+D+H NM+L V E T + + ++ + K R I +F+
Sbjct: 25 IYVKLRGERELRGRLHAYDQHLNMILGEVEETLTTVEIDDETYEEIIKTQK-RVIPFLFV 83
Query: 87 RGDSVIIV 94
RGD +I+V
Sbjct: 84 RGDGIILV 91
>gi|281200512|gb|EFA74730.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 99
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++ + +L G++ A+D+H NM+L NV E + K + ++ + N R I +F+
Sbjct: 26 IFVKMRQDRELRGKLHAYDQHLNMILSNVEETIKVVEKDEETDEEIVK-NIKRNIDMLFV 84
Query: 87 RGDSVIIV 94
RGD VI++
Sbjct: 85 RGDGVILI 92
>gi|302792517|ref|XP_002978024.1| hypothetical protein SELMODRAFT_443745 [Selaginella moellendorffii]
gi|300154045|gb|EFJ20681.1| hypothetical protein SELMODRAFT_443745 [Selaginella moellendorffii]
Length = 1100
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 23/35 (65%), Positives = 26/35 (74%), Gaps = 4/35 (11%)
Query: 2 SRAMDEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQ 36
+RAM+EDT +EEEFN GPLSVL SVK NTQ
Sbjct: 925 ARAMEEDTK----KEEEFNIGPLSVLTSSVKQNTQ 955
>gi|442761385|gb|JAA72851.1| Putative u6 small nuclear rna associated, partial [Ixodes ricinus]
Length = 148
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+
Sbjct: 74 IYVKMRNERELRGRLHAYDQHLNMILGDVEETVTSVEIDEETYEEVYKSTK-RSIPMLFV 132
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 133 RGDGVILV 140
>gi|71030066|ref|XP_764675.1| hypothetical protein [Theileria parva strain Muguga]
gi|68351631|gb|EAN32392.1| Sm protein, putative [Theileria parva]
Length = 84
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWT 60
V+ + KN +L+GR++AFD HCNMVL V E T
Sbjct: 21 VIYLKCKNGRELVGRLQAFDEHCNMVLSEVTETIT 55
>gi|393909110|gb|EJD75322.1| hypothetical protein LOAG_17508 [Loa loa]
Length = 103
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N+ ++ GR+ AFD+H NM+L V E T + + ++ K R I +F+
Sbjct: 30 IYVKMRNDREVRGRLHAFDQHLNMILSQVEETVTTVELDEENFEEMHKQTK-RQIPMLFV 88
Query: 87 RGDSVIIV 94
RGD++I+V
Sbjct: 89 RGDAIILV 96
>gi|401399263|ref|XP_003880515.1| deha2e04510p, related [Neospora caninum Liverpool]
gi|325114925|emb|CBZ50482.1| deha2e04510p, related [Neospora caninum Liverpool]
Length = 96
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 7/69 (10%)
Query: 29 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTEL---PKTGKGKKKALPVNKDRFISKMF 85
+ + + +++G++ A+D H NMVL +V E+ T + P TG + K R + +F
Sbjct: 24 IKCRGDREVMGKLHAYDMHLNMVLGDVEEVATTVTTDPLTGDEQTK----KTTRRLPLIF 79
Query: 86 LRGDSVIIV 94
LRGD++I+V
Sbjct: 80 LRGDAIILV 88
>gi|84043878|ref|XP_951729.1| small nuclear ribonucleoprotein [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|33348718|gb|AAQ16042.1| small nuclear ribonucleoprotein SmD2 [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|62358544|gb|AAX79005.1| small nuclear ribonucleoprotein SmD2 [Trypanosoma brucei]
Length = 111
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 27/91 (29%)
Query: 22 GPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 71
GP +L +VKN T+ L+ V AFD+H N+VL + E+
Sbjct: 32 GPFCLLDSAVKNGTRVFIQSRYNKSLVATVVAFDKHFNLVLRDAVELTM----------- 80
Query: 72 ALPVN---KDRFISKMFLRGDSVIIVLRNPK 99
VN K+R I MFLRG SV+ ++R P+
Sbjct: 81 ---VNNEQKERSIRNMFLRGASVVFIVRLPQ 108
>gi|327356944|gb|EGE85801.1| GTP-binding protein AGP-1 [Ajellomyces dermatitidis ATCC 18188]
Length = 98
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 6 DEDTTGGKTEEEEFNTGPLS---VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTEL 62
D D G E + LS V+ + ++ + +L GR+ A+D HCN+VL +V E +
Sbjct: 3 DADVGGAAPFSEPLDLVRLSLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIV 62
Query: 63 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+ ++ + K +F+RGDSV+++
Sbjct: 63 EEDESEQEIIKTIKKQE--EMLFVRGDSVVLI 92
>gi|9837176|gb|AAG00462.1|AF280394_1 Sm-D2 [Trypanosoma brucei]
gi|261326673|emb|CBH09635.1| small nuclear ribonucleoprotein SmD2 [Trypanosoma brucei gambiense
DAL972]
Length = 111
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 27/91 (29%)
Query: 22 GPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 71
GP +L +VKN T+ L+ V AFD+H N+VL + E+
Sbjct: 32 GPFCLLDSAVKNGTRVFIQSRYNKSLVATVVAFDKHFNLVLRDAVELTM----------- 80
Query: 72 ALPVN---KDRFISKMFLRGDSVIIVLRNPK 99
VN K+R I MFLRG SV+ ++R P+
Sbjct: 81 ---VNNEQKERSIRNMFLRGASVVFIVRLPQ 108
>gi|255727663|ref|XP_002548757.1| hypothetical protein CTRG_03054 [Candida tropicalis MYA-3404]
gi|240133073|gb|EER32629.1| hypothetical protein CTRG_03054 [Candida tropicalis MYA-3404]
Length = 92
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+++ ++ +L G+++ +D HCNMVL + +E L + K K P+ K +F+
Sbjct: 26 VLVKLRGARELKGKLQGYDSHCNMVLSDAQEFIYSLDENSKIKD---PIVKK--TDMVFV 80
Query: 87 RGDSVIIV 94
RGDSVI++
Sbjct: 81 RGDSVILI 88
>gi|259489765|tpe|CBF90306.1| TPA: U6 small nuclear ribonucleoprotein (Lsm3), putative
(AFU_orthologue; AFUA_5G12570) [Aspergillus nidulans
FGSC A4]
Length = 96
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 85
++ + ++ + +L GR+ A+D HCN+VL +V E + + ++ + K +F
Sbjct: 26 IVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDENEQEHIRTIKKQE--EMLF 83
Query: 86 LRGDSVIIV 94
+RGDSV+++
Sbjct: 84 VRGDSVVLI 92
>gi|357126029|ref|XP_003564691.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like isoform
1 [Brachypodium distachyon]
Length = 98
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 9/91 (9%)
Query: 12 GKTEEEEFNTGPLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVLENVREMWTELP 63
EEE PL ++ +S+ +++ +L G++ A+D+H NM+L +V E+ T +
Sbjct: 2 ASAEEEIAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 61
Query: 64 KTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+ ++ + + R I +F+RGD VI+V
Sbjct: 62 IDDETYEEIVRTTR-RTIPFLFVRGDGVILV 91
>gi|198477433|ref|XP_002136614.1| GA29224 [Drosophila pseudoobscura pseudoobscura]
gi|198142906|gb|EDY71618.1| GA29224 [Drosophila pseudoobscura pseudoobscura]
Length = 167
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N +L GR+ AFD+H NMVL + E T + + ++ K R I +F+
Sbjct: 94 VYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTTK-RTIPMLFV 152
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 153 RGDGVILV 160
>gi|91087977|ref|XP_973274.1| PREDICTED: similar to LSM Sm-like protein family member
[Tribolium castaneum]
gi|270011905|gb|EFA08353.1| hypothetical protein TcasGA2_TC005996 [Tribolium castaneum]
Length = 101
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N+ ++ GR+ A+D+H NM+L + E T + + ++ K R I +F+
Sbjct: 28 IYVKMRNDREIRGRLHAYDQHMNMILSDAEETITTVEIDEETYEEVYRTTK-RNIPMLFV 86
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 87 RGDGVILV 94
>gi|350536415|ref|NP_001233054.1| uncharacterized protein LOC100167860 [Acyrthosiphon pisum]
gi|239792347|dbj|BAH72527.1| ACYPI008615 [Acyrthosiphon pisum]
Length = 106
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++++ +L GR+ AFD+H NMVL E T + + ++ K R I +F+
Sbjct: 33 IYVKMRHDRELRGRLHAFDQHLNMVLGEAEETITTIEVDEETFEEVYKTTK-RTIPMLFV 91
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 92 RGDGVILV 99
>gi|195452910|ref|XP_002073554.1| GK14178 [Drosophila willistoni]
gi|194169639|gb|EDW84540.1| GK14178 [Drosophila willistoni]
Length = 256
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N +L GR+ AFD+H NMVL + E T + + ++ K R I +F+
Sbjct: 183 VYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTTK-RTIPMLFV 241
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 242 RGDGVILV 249
>gi|320167518|gb|EFW44417.1| hypothetical protein CAOG_02442 [Capsaspora owczarzaki ATCC
30864]
Length = 106
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+++ ++ + +L GR+ A+D+H NM+L +V E T + + ++ + K R + +F+
Sbjct: 33 ILVKMRGDRELRGRLHAYDQHLNMILSDVEETVTTVEIDEETFEEMVKTTK-REVPMLFV 91
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 92 RGDGVILV 99
>gi|355561171|gb|EHH17857.1| hypothetical protein EGK_14338 [Macaca mulatta]
Length = 102
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 15/102 (14%)
Query: 1 MSRAMDEDTTGGKTEEEEFNTGPLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVL 52
M+ +D+ T EE PL ++ +S+ +N+ +L GR+ A+D++ NM+L
Sbjct: 1 MADDVDQQQTTNTVEE------PLDLIRLSLDERIDVKMRNDQELRGRLHAYDQYSNMIL 54
Query: 53 ENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+V E T + + ++ K R I +F+RGD V++V
Sbjct: 55 GDVEETVTTIEIDEETYEEIYKSMK-RNIPMLFVRGDGVVLV 95
>gi|432110929|gb|ELK34403.1| U6 snRNA-associated Sm-like protein LSm3 [Myotis davidii]
Length = 70
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 31 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 90
++N+ +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+RGD
Sbjct: 1 MRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDG 59
Query: 91 VIIV 94
V++V
Sbjct: 60 VVLV 63
>gi|224011054|ref|XP_002294484.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220969979|gb|EED88318.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 90
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 6/85 (7%)
Query: 14 TEEEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK 70
T EE + LS+ + + +N+ +L G++ AFD+H NMVL +V E T + + +
Sbjct: 1 TMEEPLDLIKLSIDERVYVKCRNDRELRGKLHAFDQHLNMVLSDVEETITSTEEDDETGE 60
Query: 71 KALPVNK-DRFISKMFLRGDSVIIV 94
+ VNK R + +F+RGD V++V
Sbjct: 61 EI--VNKRTRSVGMLFVRGDIVVLV 83
>gi|109068881|ref|XP_001099845.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3 [Macaca
mulatta]
gi|355748132|gb|EHH52629.1| hypothetical protein EGM_13096 [Macaca fascicularis]
Length = 102
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 15/102 (14%)
Query: 1 MSRAMDEDTTGGKTEEEEFNTGPLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVL 52
M+ +D+ T EE PL ++ +S+ +N+ +L GR+ A+D++ NM+L
Sbjct: 1 MADDVDQQQTTNTVEE------PLDLIRLSLDERIDVKMRNDQELRGRLHAYDQYSNMIL 54
Query: 53 ENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+V E T + + ++ K R I +F RGD V++V
Sbjct: 55 GDVEETVTTIEIDEETYEEIYKSMK-RNIPMLFFRGDGVVLV 95
>gi|444705548|gb|ELW46970.1| U6 snRNA-associated Sm-like protein LSm3 [Tupaia chinensis]
Length = 70
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 31 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 90
++N+ +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+RGD
Sbjct: 1 MRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDG 59
Query: 91 VIIV 94
V++V
Sbjct: 60 VVLV 63
>gi|237844935|ref|XP_002371765.1| LSM domain-containing protein [Toxoplasma gondii ME49]
gi|211969429|gb|EEB04625.1| LSM domain-containing protein [Toxoplasma gondii ME49]
gi|221480823|gb|EEE19247.1| LSM domain-containing protein, putative [Toxoplasma gondii GT1]
gi|221501570|gb|EEE27343.1| LSM domain-containing protein, putative [Toxoplasma gondii VEG]
Length = 96
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 7/69 (10%)
Query: 29 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTEL---PKTGKGKKKALPVNKDRFISKMF 85
+ + + +++G++ A+D H NMVL +V E+ T + P TG + K R + +F
Sbjct: 24 IKCRGDREVVGKLHAYDMHLNMVLGDVEEVATTVTSDPLTGDEQTK----KTTRRLPLIF 79
Query: 86 LRGDSVIIV 94
LRGD++I+V
Sbjct: 80 LRGDAIILV 88
>gi|115441259|ref|NP_001044909.1| Os01g0866700 [Oryza sativa Japonica Group]
gi|56785201|dbj|BAD81919.1| small nuclear ribonucleoprotein-like [Oryza sativa Japonica
Group]
gi|113534440|dbj|BAF06823.1| Os01g0866700 [Oryza sativa Japonica Group]
gi|125528497|gb|EAY76611.1| hypothetical protein OsI_04561 [Oryza sativa Indica Group]
gi|125572761|gb|EAZ14276.1| hypothetical protein OsJ_04201 [Oryza sativa Japonica Group]
gi|215708805|dbj|BAG94074.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765758|dbj|BAG87455.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 104
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++++ +L G++ A+D+H NM+L +V E+ T + + ++ + K R I +F+
Sbjct: 31 IYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTK-RTIPFLFV 89
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 90 RGDGVILV 97
>gi|145249892|ref|XP_001401285.1| U6 snRNA-associated Sm-like protein LSm3 [Aspergillus niger CBS
513.88]
gi|134081970|emb|CAK46655.1| unnamed protein product [Aspergillus niger]
Length = 96
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 85
++ + ++ + +L GR+ A+D HCN+VL +V E + + ++ + K +F
Sbjct: 26 IVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDENEQETLRTIKKQE--EMLF 83
Query: 86 LRGDSVIIV 94
+RGDSV+++
Sbjct: 84 VRGDSVVLI 92
>gi|400599588|gb|EJP67285.1| U6 snRNA-associated Sm-like protein LSm3 [Beauveria bassiana
ARSEF 2860]
Length = 95
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 85
V+ + ++ + +L G++ A+D HCN+VL V E + + + + K++ R +F
Sbjct: 25 VVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYGVEEDDEEEAKSVS----RKSEMLF 80
Query: 86 LRGDSVIIV 94
+RGDSV+++
Sbjct: 81 VRGDSVVLI 89
>gi|451997874|gb|EMD90339.1| hypothetical protein COCHEDRAFT_1139604 [Cochliobolus
heterostrophus C5]
Length = 96
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKM 84
++++ ++ + +L GR+ A+D HCN+VL +V E ++ + + V K +
Sbjct: 21 IVILKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIAEEDDDDQEPRVRTVKKQS--EML 78
Query: 85 FLRGDSVIIV 94
F+RGDSV+++
Sbjct: 79 FIRGDSVVLI 88
>gi|330918430|ref|XP_003298219.1| hypothetical protein PTT_08854 [Pyrenophora teres f. teres 0-1]
gi|311328701|gb|EFQ93672.1| hypothetical protein PTT_08854 [Pyrenophora teres f. teres 0-1]
Length = 96
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 11/89 (12%)
Query: 15 EEEEFNTGPLS--------VLMMSVKNNTQLLGRVRAFDRHCNMVLENVRE-MWTELPKT 65
EE+E PL V+++ ++ + +L GR+ A+D HCN+VL +V E ++ +
Sbjct: 2 EEKEETNEPLDLVRLCIDEVVIVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYMAEEED 61
Query: 66 GKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+ + V K + +F+RGDSV+++
Sbjct: 62 DDQEPRVRTVKKQSEM--LFVRGDSVVLI 88
>gi|295670537|ref|XP_002795816.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226284901|gb|EEH40467.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 99
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 85
V+ + ++ + +L GR+ A+D HCN+VL +V E + + ++ + K +F
Sbjct: 26 VVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIVEEDESEREMIKTIKKQE--EMLF 83
Query: 86 LRGDSVIIV 94
+RGDSV+++
Sbjct: 84 VRGDSVVLI 92
>gi|195573319|ref|XP_002104641.1| GD21053 [Drosophila simulans]
gi|194200568|gb|EDX14144.1| GD21053 [Drosophila simulans]
Length = 218
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N +L GR+ AFD+H NMVL + E T + + ++ K R I +F+
Sbjct: 30 VYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTAK-RTIPMLFV 88
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 89 RGDGVILV 96
>gi|255953441|ref|XP_002567473.1| Pc21g04270 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589184|emb|CAP95324.1| Pc21g04270 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 96
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 6 DEDTTGGKTEEEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTEL 62
D + GG + E + LS+ + + ++ + +L GR+ A+D HCN+VL +V E +
Sbjct: 3 DTEDAGGPSVSEPLDLVRLSLDETVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVV 62
Query: 63 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+ ++ + K +F+RGDSV+++
Sbjct: 63 EEDENEEETLRTIKKQE--EMLFVRGDSVVLI 92
>gi|253748557|gb|EET02611.1| U6 snRNA-associated Sm-like protein LSm3, putative [Giardia
intestinalis ATCC 50581]
Length = 126
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 15/66 (22%)
Query: 31 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 90
++NN+ + G + +FD H N++L N E TG P+N RF +F+RGDS
Sbjct: 69 LQNNSSVTGLLASFDEHMNIILINAEE-------TGH------PLN--RFFPLLFIRGDS 113
Query: 91 VIIVLR 96
+I V R
Sbjct: 114 IIFVTR 119
>gi|312074108|ref|XP_003139822.1| U6 snRNA-associated Sm-like protein LSm3 [Loa loa]
Length = 136
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N+ ++ GR+ AFD+H NM+L V E T + + + + + R I +F+
Sbjct: 63 IYVKMRNDREVRGRLHAFDQHLNMILSQVEETVTTV-ELDEENFEEMHKQTKRQIPMLFV 121
Query: 87 RGDSVIIV 94
RGD++I+V
Sbjct: 122 RGDAIILV 129
>gi|395843168|ref|XP_003794368.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Otolemur garnettii]
Length = 99
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N+ +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+
Sbjct: 26 IYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFV 84
Query: 87 RGDSVIIV 94
+GD V++V
Sbjct: 85 QGDGVVLV 92
>gi|300681475|emb|CBH32569.1| U6 snRNA-associated Sm-like protein, expressed [Triticum
aestivum]
Length = 98
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++++ +L G++ A+D+H NM+L +V E+ T + + ++ + + R I +F+
Sbjct: 25 IYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTR-RAIPFLFV 83
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 84 RGDGVILV 91
>gi|356553373|ref|XP_003545031.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Glycine max]
Length = 281
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 29 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD--RFISKMFL 86
+++++ QL+G+ AFDRH N+VL + E + +LP KGKK A +++ R + + L
Sbjct: 19 VTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKKPAEGGDREDRRTLGLVLL 76
Query: 87 RGDSVI 92
RG+ VI
Sbjct: 77 RGEEVI 82
>gi|154283195|ref|XP_001542393.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150410573|gb|EDN05961.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 98
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 85
V+ + ++ + +L GR+ A+D HCN+VL +V E + + ++ + K +F
Sbjct: 26 VVFVKLRGDRELRGRLHAYDSHCNLVLGDVEETIYIVEEDESEQEVIKTIKKQE--EMLF 83
Query: 86 LRGDSVIIV 94
+RGDSV+++
Sbjct: 84 VRGDSVVLI 92
>gi|387598163|gb|AFJ91737.1| Lsm3 protein [Ostrea edulis]
Length = 103
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+
Sbjct: 29 IYVKMRNERELRGRLNAYDQHLNMILGDVEETVTTVEIDEETFEEIYKSTK-RNIPMLFV 87
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 88 RGDGVILV 95
>gi|449302452|gb|EMC98461.1| hypothetical protein BAUCODRAFT_138202 [Baudoinia compniacensis
UAMH 10762]
Length = 95
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM-F 85
+ + ++ + +L GR+ A+D HCN+VL V E ++ + G+ V + S+M F
Sbjct: 27 VFVKLRGDRELQGRLHAYDSHCNLVLGEVTETIYQVAEEAGGED----VRTLKKQSEMLF 82
Query: 86 LRGDSVIIV 94
+RGDSV+++
Sbjct: 83 VRGDSVVLI 91
>gi|170588931|ref|XP_001899227.1| U6 snRNA-associated Sm-like protein LSm3 [Brugia malayi]
gi|158593440|gb|EDP32035.1| U6 snRNA-associated Sm-like protein LSm3, putative [Brugia malayi]
Length = 136
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N+ ++ GR+ AFD+H NM+L V E T + + + + + R I +F+
Sbjct: 63 IYVKMRNDREVRGRLHAFDQHLNMILSQVEETVTTV-ELDEENFEEMHKQTKRQIPMLFV 121
Query: 87 RGDSVIIV 94
RGD++I+V
Sbjct: 122 RGDAIILV 129
>gi|225561720|gb|EEH10000.1| U6 snRNP-associated protein Lsm3 [Ajellomyces capsulatus G186AR]
gi|240275325|gb|EER38839.1| U6 snRNP-associated protein Lsm3 [Ajellomyces capsulatus H143]
gi|325091160|gb|EGC44470.1| U6 snRNP-associated protein Lsm3 [Ajellomyces capsulatus H88]
Length = 98
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 85
V+ + ++ + +L GR+ A+D HCN+VL +V E + + ++ + K +F
Sbjct: 26 VVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIVEEDESEQEVIKTIKKQE--EMLF 83
Query: 86 LRGDSVIIV 94
+RGDSV+++
Sbjct: 84 VRGDSVVLI 92
>gi|66362586|ref|XP_628259.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
gi|46229856|gb|EAK90674.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
Length = 95
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 23 PLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALP 74
PL ++ +S+ + N +L G + A+D H NMVL NV E + E +
Sbjct: 7 PLDLIRLSLDEQVFVKCRGNRELKGTLYAYDPHMNMVLGNVEETYYEEESKSDTQNSEKK 66
Query: 75 VNKDRFISKMFLRGDSVIIV 94
+ K R I +FLRGD +I+V
Sbjct: 67 LKKRR-IEMLFLRGDLIILV 85
>gi|358374818|dbj|GAA91407.1| U6 small nuclear ribonucleoprotein [Aspergillus kawachii IFO
4308]
Length = 96
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 85
++ + ++ + +L GR+ A+D HCN+VL +V E + + ++ + K +F
Sbjct: 26 IVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDENEQEILRTIKKQE--EMLF 83
Query: 86 LRGDSVIIV 94
+RGDSV+++
Sbjct: 84 VRGDSVVLI 92
>gi|347966098|ref|XP_003435864.1| AGAP013519-PA [Anopheles gambiae str. PEST]
gi|333470212|gb|EGK97549.1| AGAP013519-PA [Anopheles gambiae str. PEST]
Length = 101
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++ +L GR+ AFD+H NMVL + E T + + ++ K R I +F+
Sbjct: 27 IYVKMRYERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTTK-RTIPMLFV 85
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 86 RGDGVILV 93
>gi|449446417|ref|XP_004140968.1| PREDICTED: LOW QUALITY PROTEIN: U6 snRNA-associated Sm-like
protein LSm3-like [Cucumis sativus]
Length = 101
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 51/93 (54%), Gaps = 13/93 (13%)
Query: 14 TEEEEFNTGPLSVLMMSV------------KNNTQLLGRVRAFDRHCNMVLENVREMWTE 61
TEEE PL ++ +S+ +++ +L G++ A+D+H NM+L +V E T
Sbjct: 3 TEEESTVKEPLDLIRLSLDERIYVKSLXPLRSDRELRGKLHAYDQHLNMILGDVEESVTT 62
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+ + ++ + ++ R + +F+RGD VI+V
Sbjct: 63 VEIDDETYEEIVRTSR-RTVPFLFVRGDGVILV 94
>gi|50421915|ref|XP_459516.1| DEHA2E04510p [Debaryomyces hansenii CBS767]
gi|49655184|emb|CAG87742.1| DEHA2E04510p [Debaryomyces hansenii CBS767]
Length = 88
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 44/69 (63%), Gaps = 8/69 (11%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 85
++++ ++ ++ G+++ +D HCNM+L + E ++P +G++ PV K+ +F
Sbjct: 24 LVLVKLRGAREMKGKLQGYDSHCNMILSDAVEYIYDVP---EGQE---PVTKN--TDMVF 75
Query: 86 LRGDSVIIV 94
+RGDSVI++
Sbjct: 76 VRGDSVILI 84
>gi|169614602|ref|XP_001800717.1| hypothetical protein SNOG_10447 [Phaeosphaeria nodorum SN15]
gi|160702780|gb|EAT81841.2| hypothetical protein SNOG_10447 [Phaeosphaeria nodorum SN15]
Length = 96
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 11/89 (12%)
Query: 15 EEEEFNTGPLS--------VLMMSVKNNTQLLGRVRAFDRHCNMVLENVRE-MWTELPKT 65
EE+E PL V+++ ++ + +L GR+ A+D HCN+VL +V E ++ +
Sbjct: 2 EEKEETNEPLDLVRLCIDEVVIVKLRGDRELKGRLHAYDSHCNLVLGDVEETIFVAEEEE 61
Query: 66 GKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+ + V K +F+RGDSV+++
Sbjct: 62 EDQEPRVRTVKKQS--EMLFVRGDSVVLI 88
>gi|326501494|dbj|BAK02536.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 121
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++++ +L G++ A+D+H NM+L +V E+ T + + ++ + + R I +F+
Sbjct: 48 IYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTR-RTIPFLFV 106
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 107 RGDGVILV 114
>gi|330796969|ref|XP_003286536.1| hypothetical protein DICPUDRAFT_30992 [Dictyostelium purpureum]
gi|325083517|gb|EGC36968.1| hypothetical protein DICPUDRAFT_30992 [Dictyostelium purpureum]
Length = 97
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 14 TEEEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK 70
T EE + LS+ + + ++ + +L G++ A+D+H NM+L +V E + K + +
Sbjct: 8 TVEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEETDE 67
Query: 71 KALPVNKDRFISKMFLRGDSVIIV 94
+ + N R I +F+RGD VI++
Sbjct: 68 EIIR-NIKRNIKMLFIRGDGVILI 90
>gi|449433521|ref|XP_004134546.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Cucumis sativus]
gi|449490639|ref|XP_004158663.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Cucumis sativus]
Length = 284
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 29 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 88
+++++ QL+G+ AFDRH N+VL + E + +LP KGKK ++ R + + LRG
Sbjct: 19 VTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKKTNEERDERRTLGLVLLRG 76
Query: 89 DSVI 92
+ VI
Sbjct: 77 EEVI 80
>gi|342180098|emb|CCC89574.1| putative small nuclear ribonucleoprotein SmD2 [Trypanosoma
congolense IL3000]
Length = 111
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 27/91 (29%)
Query: 22 GPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 71
GP +L +VKN T+ L+ V AFD+H N+VL + E+
Sbjct: 32 GPFCLLDSAVKNGTRVFIQSRYNKSLVATVVAFDKHFNLVLRDAVEL------------- 78
Query: 72 ALPVN---KDRFISKMFLRGDSVIIVLRNPK 99
+ +N K+R I MFLRG SV+ +++ P+
Sbjct: 79 -MMINDEQKERSIRNMFLRGASVVFIVKLPQ 108
>gi|301760133|ref|XP_002915871.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Ailuropoda
melanoleuca]
Length = 182
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 19/94 (20%)
Query: 13 KTEEEEFNTGPLSVLMMSVKNNTQLL---------GRVRAFDRHCNMVLENVREMWTELP 63
K E+ E N GPLSVL +S N L+ V+A D H + WTE P
Sbjct: 93 KWEDRESNMGPLSVLTVSQDNTLMLIHGRNSEKPPAHVKASDGHSTWCWRS----WTESP 148
Query: 64 KTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 97
+ + V+K +S++FL D V++V +N
Sbjct: 149 RAARA------VSKVCHLSRLFLCRDLVVLVPQN 176
>gi|281352778|gb|EFB28362.1| hypothetical protein PANDA_003898 [Ailuropoda melanoleuca]
Length = 107
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 19/94 (20%)
Query: 13 KTEEEEFNTGPLSVLMMSVKNNTQLL---------GRVRAFDRHCNMVLENVREMWTELP 63
K E+ E N GPLSVL +S N L+ V+A D H + WTE P
Sbjct: 18 KWEDRESNMGPLSVLTVSQDNTLMLIHGRNSEKPPAHVKASDGHSTWCWRS----WTESP 73
Query: 64 KTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 97
+ + V+K +S++FL D V++V +N
Sbjct: 74 RAARA------VSKVCHLSRLFLCRDLVVLVPQN 101
>gi|290462981|gb|ADD24538.1| U6 snRNA-associated Sm-like protein LSm3 [Lepeophtheirus
salmonis]
Length = 105
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Query: 1 MSRAMDEDTTGGK-TEEEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVR 56
M+ D+ G T EE + LS+ + + ++N +L GR+ A+D++ NM+L V
Sbjct: 1 MAEDPDQANAGAALTVEEPLDLIRLSLDERIYVKMRNERELKGRLNAYDQYLNMILGEVE 60
Query: 57 EMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
E T + + ++ K R I +F+RGD VI+V
Sbjct: 61 ETVTSIEIDEETYEEVYRTTK-RNIPMLFVRGDGVILV 97
>gi|114051632|ref|NP_001040418.1| LSM Sm-like protein family member [Bombyx mori]
gi|95102812|gb|ABF51347.1| LSM Sm-like protein family member [Bombyx mori]
Length = 102
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N +L G++ A+D+H NMVL + E T + + ++ K R I +F+
Sbjct: 28 IYVKMRNERELRGKLHAYDQHLNMVLGDAEETITTVEIDEETYEEVYRTTK-RTIPMLFV 86
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 87 RGDGVILV 94
>gi|390596776|gb|EIN06177.1| Sm-like ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 158
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFISKMF 85
L +++ + L G++ AFDRH N+VL E PK G+ +A PV + R + +
Sbjct: 9 LKVTINDGRALTGQMLAFDRHMNLVLAECEEFRRVRPKKKPGETEAGPVQEMKRSLGLVI 68
Query: 86 LRGDSVI 92
LRG++V+
Sbjct: 69 LRGETVV 75
>gi|167375897|ref|XP_001733767.1| snrnp sm protein [Entamoeba dispar SAW760]
gi|165904941|gb|EDR30063.1| snrnp sm protein, putative [Entamoeba dispar SAW760]
Length = 99
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 27/90 (30%)
Query: 13 KTEEEEFNTGPLSVLMMSVKNNT--------QLLGRVRAFDRHCNMVLENVREMWTELPK 64
KT+ EE P+ ++ +S+ +N +L G++RAFD+H N++L +V E + E
Sbjct: 24 KTQIEE----PIDLIKLSLDDNIFIKLRGGRKLKGKLRAFDQHLNIILTDVNETYQE--- 76
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
K + PV +++RGD V+++
Sbjct: 77 ----KTRTFPV--------LYVRGDLVVLI 94
>gi|440637312|gb|ELR07231.1| hypothetical protein GMDG_02458 [Geomyces destructans 20631-21]
Length = 98
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 85
++ + ++ + +L GR+ A+D HCN+VL +V E + + + + ++K +F
Sbjct: 26 IVFVKLRGDRELKGRLHAYDSHCNLVLGDVVETVYVVDEDDEDGETLKTIHKKS--EMLF 83
Query: 86 LRGDSVIIV 94
+RGDSV+++
Sbjct: 84 VRGDSVVLI 92
>gi|111226776|ref|XP_001134590.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|121962505|sp|Q1ZXK3.1|LSM3_DICDI RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm3
gi|90970763|gb|EAS66906.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 97
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 14 TEEEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK 70
T EE + LS+ + + ++ + +L G++ A+D+H NM+L +V E + K + +
Sbjct: 8 TVEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEETDE 67
Query: 71 KALPVNKDRFISKMFLRGDSVIIV 94
+ + N R I +F+RGD VI++
Sbjct: 68 EIIR-NIKRNIKMLFVRGDGVILI 90
>gi|254565075|ref|XP_002489648.1| Lsm (Like Sm) protein [Komagataella pastoris GS115]
gi|238029444|emb|CAY67367.1| Lsm (Like Sm) protein [Komagataella pastoris GS115]
Length = 84
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 6/59 (10%)
Query: 36 QLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+++G++ A+D HCN+VL + E + + + + K + KDR + ++LRGDSVI+V
Sbjct: 27 EIVGKLHAYDNHCNLVLGDAVETISTVDENNELKTQT----KDRPM--VYLRGDSVILV 79
>gi|340054745|emb|CCC49047.1| putative small nuclear ribonucleoprotein SmD2 [Trypanosoma vivax
Y486]
Length = 111
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 21/88 (23%)
Query: 22 GPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 71
GP S+L +V++ T+ L+ V AFD+H N+VL + E+ + K +
Sbjct: 32 GPFSLLESAVRDGTRVFIQSRFNKSLVATVVAFDKHFNLVLRDAVELT--MVKNEQ---- 85
Query: 72 ALPVNKDRFISKMFLRGDSVIIVLRNPK 99
++R I MFLRG SV+ V++ P+
Sbjct: 86 -----RERSIRNMFLRGSSVVFVVKLPQ 108
>gi|367012788|ref|XP_003680894.1| hypothetical protein TDEL_0D00990 [Torulaspora delbrueckii]
gi|359748554|emb|CCE91683.1| hypothetical protein TDEL_0D00990 [Torulaspora delbrueckii]
Length = 85
Score = 41.6 bits (96), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 36 QLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
+L+G ++AFD HCN+VL + E +L G+ K+ N + +F+RGDSV ++
Sbjct: 27 ELIGTLQAFDSHCNIVLSDAVETIYQLE---SGELKSTEKNSEM----IFVRGDSVTLIT 79
Query: 96 RNP 98
P
Sbjct: 80 TPP 82
>gi|328350067|emb|CCA36467.1| U6 snRNA-associated Sm-like protein LSm6 [Komagataella pastoris CBS
7435]
Length = 199
Score = 41.6 bits (96), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 6/59 (10%)
Query: 36 QLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+++G++ A+D HCN+VL + E + + + + K + KDR + ++LRGDSVI+V
Sbjct: 142 EIVGKLHAYDNHCNLVLGDAVETISTVDENNELKTQT----KDRPM--VYLRGDSVILV 194
>gi|451847192|gb|EMD60500.1| hypothetical protein COCSADRAFT_40145 [Cochliobolus sativus
ND90Pr]
Length = 96
Score = 41.6 bits (96), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKM 84
++++ ++ + +L GR+ A+D HCN+VL +V E ++ + + + K +
Sbjct: 21 IVIVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYLAEEDDDDQEPRVRTIKKQS--EML 78
Query: 85 FLRGDSVIIV 94
F+RGDSV+++
Sbjct: 79 FIRGDSVVLI 88
>gi|194910032|ref|XP_001982061.1| GG11245 [Drosophila erecta]
gi|190656699|gb|EDV53931.1| GG11245 [Drosophila erecta]
Length = 176
Score = 41.2 bits (95), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N +L GR+ AFD+H N+VL + E T + + ++ K R I +F+
Sbjct: 30 VYVKMRNERELRGRLHAFDQHLNIVLGDAEETVTTVEIDEETYEEVYKTAK-RTIPMLFV 88
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 89 RGDGVILV 96
>gi|221053504|ref|XP_002258126.1| ribonucleoprotein [Plasmodium knowlesi strain H]
gi|193807959|emb|CAQ38663.1| ribonucleoprotein, putative [Plasmodium knowlesi strain H]
Length = 91
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMW--TELPKTGKGKKKALPVNKDRFISKM 84
+ + K + ++ G++ A+D H NM+L N RE + T + + KK +R + +
Sbjct: 22 VFLKCKGDREIRGKLDAYDNHLNMILSNARETYKQTVMENDEESVKKI-----ERNLDMV 76
Query: 85 FLRGDSVIIV 94
F+RGDS+I+V
Sbjct: 77 FVRGDSIILV 86
>gi|348682103|gb|EGZ21919.1| hypothetical protein PHYSODRAFT_285678 [Phytophthora sojae]
Length = 92
Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 15/83 (18%)
Query: 23 PLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVLENVREMWT--EL-PKTGKGKKK 71
PL ++ +SV + + +L G ++A+D+H NMVL +V E T EL P+T + K
Sbjct: 7 PLDLIKLSVAERIYVKCRGDRELRGVLQAYDQHLNMVLSDVEETITVQELDPETYEELIK 66
Query: 72 ALPVNKDRFISKMFLRGDSVIIV 94
R I +F+RGD VI+V
Sbjct: 67 ----QSKRTIEMLFVRGDVVILV 85
>gi|110671432|gb|ABG81967.1| putative U6 snRNA-associated Sm-like protein LSm3 [Diaphorina
citri]
Length = 101
Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 29 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 88
+ ++N L G++ A+D+H NMVL +V E T + + ++ K R I +F+RG
Sbjct: 28 VKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTK-RSIPMLFVRG 86
Query: 89 DSVIIV 94
D VI+V
Sbjct: 87 DGVILV 92
>gi|410080239|ref|XP_003957700.1| hypothetical protein KAFR_0E04140 [Kazachstania africana CBS
2517]
gi|372464286|emb|CCF58565.1| hypothetical protein KAFR_0E04140 [Kazachstania africana CBS
2517]
Length = 85
Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 37 LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
L G ++AFD HCN+VL + E EL G+ +K++ +F+RGDSV ++
Sbjct: 27 LTGTLQAFDSHCNIVLSDAVETIYELDGNGELS------SKEKKSEMIFVRGDSVTLI 78
>gi|357494377|ref|XP_003617477.1| Small nuclear ribonucleoprotein-associated protein B [Medicago
truncatula]
gi|355518812|gb|AET00436.1| Small nuclear ribonucleoprotein-associated protein B [Medicago
truncatula]
Length = 394
Score = 41.2 bits (95), Expect = 0.088, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD-RFISKMF 85
+ +++++ QL+G+ AFDRH N+VL + E + +LP KGKK +D R + +
Sbjct: 17 MRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPP-AKGKKTTDGDREDRRTLGLVL 74
Query: 86 LRGDSVI 92
LRG+ VI
Sbjct: 75 LRGEEVI 81
>gi|429964879|gb|ELA46877.1| hypothetical protein VCUG_01651 [Vavraia culicis 'floridensis']
Length = 92
Score = 41.2 bits (95), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 28 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 87
++++++N +L G VR D H NM+L +V E+ K KG KK +R I + LR
Sbjct: 24 IVNLRSNRKLCGIVRVIDHHFNMILTDVTEIRKTKSK-NKGVKKREGTTVERKIKCLVLR 82
Query: 88 GDSVIIV 94
GD+VI V
Sbjct: 83 GDNVISV 89
>gi|212533023|ref|XP_002146668.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Talaromyces
marneffei ATCC 18224]
gi|210072032|gb|EEA26121.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Talaromyces
marneffei ATCC 18224]
Length = 96
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 85
++ + ++ + +L GR+ A+D HCN+VL +V E + + ++ + K +F
Sbjct: 25 IVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDENEEETVKTIRKQE--EMLF 82
Query: 86 LRGDSVIIV 94
+RGDSV+++
Sbjct: 83 VRGDSVVLI 91
>gi|21536707|gb|AAM61039.1| putative snRNP protein [Arabidopsis thaliana]
Length = 254
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 29 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 88
+++++ QL+G+ AFDRH N+VL + E + +LP KK + + R + + LRG
Sbjct: 19 VTIQDGRQLIGKFMAFDRHMNLVLGDCEE-FRKLPPAKGNKKTSEEREERRTLGLVLLRG 77
Query: 89 DSVI 92
+ VI
Sbjct: 78 EEVI 81
>gi|301106621|ref|XP_002902393.1| U6 snRNA-associated Sm-like protein LSm3, putative [Phytophthora
infestans T30-4]
gi|262098267|gb|EEY56319.1| U6 snRNA-associated Sm-like protein LSm3, putative [Phytophthora
infestans T30-4]
Length = 92
Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 15/83 (18%)
Query: 23 PLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVLENVREMWT--EL-PKTGKGKKK 71
PL ++ +SV + + +L G ++A+D+H NMVL +V E T EL P+T + K
Sbjct: 7 PLDLIKLSVAERIYVKCRGDRELRGVLQAYDQHLNMVLSDVEETITVQELDPETYEELIK 66
Query: 72 ALPVNKDRFISKMFLRGDSVIIV 94
R I +F+RGD VI+V
Sbjct: 67 ----QSKRTIEMLFVRGDVVILV 85
>gi|302696809|ref|XP_003038083.1| hypothetical protein SCHCODRAFT_102915 [Schizophyllum commune
H4-8]
gi|300111780|gb|EFJ03181.1| hypothetical protein SCHCODRAFT_102915, partial [Schizophyllum
commune H4-8]
Length = 95
Score = 40.8 bits (94), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 6/84 (7%)
Query: 16 EEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVRE--MWTELPKTGKGKK 70
+E F+ LS+ + + ++ + QL G + A+D H N++L +V E M ++P+ +
Sbjct: 8 QEPFDLIRLSLSERVFVKLRGDRQLEGVLHAYDGHMNLILSDVEETIMIVDVPEGAPESQ 67
Query: 71 KALPVNKDRFISKMFLRGDSVIIV 94
+ V K R + +F+RGD VI+V
Sbjct: 68 GTVNVAK-RKMGMLFVRGDGVILV 90
>gi|242777144|ref|XP_002478974.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Talaromyces
stipitatus ATCC 10500]
gi|218722593|gb|EED22011.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Talaromyces
stipitatus ATCC 10500]
Length = 96
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 85
++ + ++ + +L GR+ A+D HCN+VL +V E + + ++ + K +F
Sbjct: 25 IVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDENEEETVKTIRKQE--EMLF 82
Query: 86 LRGDSVIIV 94
+RGDSV+++
Sbjct: 83 VRGDSVVLI 91
>gi|385805901|ref|YP_005842299.1| putative snRNP Sm protein [Fervidicoccus fontis Kam940]
gi|383795764|gb|AFH42847.1| putative snRNP Sm protein [Fervidicoccus fontis Kam940]
Length = 76
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%), Gaps = 14/68 (20%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+++ +K N ++ G+++++D H N+VLE+ E++ P + R + + +
Sbjct: 17 VLVKLKGNKEVRGKLKSYDHHLNIVLEDAEELF--------------PDGQARKLGTVII 62
Query: 87 RGDSVIIV 94
RGD+VII+
Sbjct: 63 RGDNVIII 70
>gi|398407923|ref|XP_003855427.1| hypothetical protein MYCGRDRAFT_84746 [Zymoseptoria tritici
IPO323]
gi|339475311|gb|EGP90403.1| hypothetical protein MYCGRDRAFT_84746 [Zymoseptoria tritici
IPO323]
Length = 94
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 85
V+ + ++ + +L GR+ A+D HCN+VL +V E + + + + + + +F
Sbjct: 26 VVFVKLRGDRELQGRLHAYDSHCNLVLGDVTETVYVVDEEDEDNVRTVKKQSE----MLF 81
Query: 86 LRGDSVIIV 94
+RGDSV+++
Sbjct: 82 VRGDSVVLI 90
>gi|115387369|ref|XP_001211190.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114195274|gb|EAU36974.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 97
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 7 EDTTGGKTEEEEFNTGPLS---VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELP 63
ED + E + LS ++ + ++ + +L GR+ A+D HCN+VL +V E +
Sbjct: 5 EDAGSAPSVSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVE 64
Query: 64 KTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
++ + K +F+RGDSV+++
Sbjct: 65 DDENEEETIRTIKKQE--EMLFVRGDSVVLI 93
>gi|449547896|gb|EMD38863.1| hypothetical protein CERSUDRAFT_112585 [Ceriporiopsis
subvermispora B]
Length = 184
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFISKMF 85
L +++ + +G++ AFDRH N+VL E PK G+ +A PV + R + +
Sbjct: 19 LKVTINDGRAFVGQMLAFDRHMNLVLAECEEFRRIRPKKKPGETEAGPVQEMKRTLGLVI 78
Query: 86 LRGDSVI 92
LRG++V+
Sbjct: 79 LRGETVV 85
>gi|384247810|gb|EIE21296.1| hypothetical protein COCSUDRAFT_83520 [Coccomyxa subellipsoidea
C-169]
Length = 270
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 33 NNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVI 92
++ ++GR AFDRH N+VL + E PK G+ +++ ++ R + + LRGD VI
Sbjct: 23 DSRHIVGRFMAFDRHMNLVLGDAEEFRKLPPKKGRTEEER---DQRRVLGLVLLRGDEVI 79
>gi|392568264|gb|EIW61438.1| like-Sm ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 97
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 10 TGGKTEEEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVRE--MWTELPK 64
T +E F+ LS+ + + ++ + +L G + A+D H N++L +V E M + P+
Sbjct: 3 TAANGIQEPFDLIRLSLSERVFVKLRGDRELTGILHAYDGHMNLILSDVEETIMIVDQPE 62
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
G + + + K R + +F+RGD VI+V
Sbjct: 63 GGPEEHSTVNIAK-RKMDMLFVRGDGVILV 91
>gi|367026602|ref|XP_003662585.1| hypothetical protein MYCTH_2303370 [Myceliophthora thermophila
ATCC 42464]
gi|347009854|gb|AEO57340.1| hypothetical protein MYCTH_2303370 [Myceliophthora thermophila
ATCC 42464]
Length = 96
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 85
V+ + ++ + +L GR+ A+D HCN+VL +V E + K + + +F
Sbjct: 25 VVCVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVDDEDDEDVKTVSKKSE----MLF 80
Query: 86 LRGDSVIIV 94
+RGDSV+++
Sbjct: 81 VRGDSVVLI 89
>gi|224117856|ref|XP_002317685.1| predicted protein [Populus trichocarpa]
gi|222860750|gb|EEE98297.1| predicted protein [Populus trichocarpa]
Length = 250
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 29 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 88
+++++ QL+G+ AFDRH N+VL + E + +LP KGKK R + + LRG
Sbjct: 19 VTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKKNNEEREDRRTLGLVLLRG 76
Query: 89 DSVI 92
+ VI
Sbjct: 77 EEVI 80
>gi|412991245|emb|CCO16090.1| U6 snRNA-associated Sm-like protein LSm3 [Bathycoccus prasinos]
Length = 114
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N+ +L G++ ++D+H NM+L V E+ T + ++ + NK R + +F+
Sbjct: 41 VYVKLRNDRELRGKLHSYDQHLNMLLGEVEEITTIREVDEETYEEIIKSNK-RSVPYLFV 99
Query: 87 RGDSVIIV 94
RGD+V ++
Sbjct: 100 RGDAVTLI 107
>gi|389582457|dbj|GAB65195.1| U6 snRNA-associated Sm-like protein LSm3 [Plasmodium cynomolgi
strain B]
Length = 91
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE-LPKTGKGKKKALPVNKDRFISKMF 85
+ + K + ++ G++ A+D H NM+L N RE + + + + + K + N D +F
Sbjct: 22 VFLKCKGDREIRGKLDAYDNHLNMILSNARETYKQSVTENDEESIKKIERNLDM----VF 77
Query: 86 LRGDSVIIV 94
+RGDS+I+V
Sbjct: 78 VRGDSIILV 86
>gi|328872794|gb|EGG21161.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 97
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++ + +L G++ A+D+H NM+L +V E + K + ++ + K R I +F+
Sbjct: 24 IFVKMRQDRELRGKLHAYDQHLNMILSDVEETIRVVEKDEETDEEIVKSIK-RKIKMLFV 82
Query: 87 RGDSVIIV 94
RGD VI++
Sbjct: 83 RGDGVILI 90
>gi|452823867|gb|EME30874.1| U6 snRNA-associated Sm-like protein LSm3 [Galdieria sulphuraria]
Length = 90
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 45/71 (63%), Gaps = 7/71 (9%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELP---KTGKGKKKALPVNKDRFISK 83
+++ ++ + +L G+++AFD+H N+VL +V E ++ +TG+ KA+ R +
Sbjct: 17 ILVKLRGDRELRGKLQAFDQHMNLVLSDVEETALKVEVDDETGEELIKAV----KRKMPM 72
Query: 84 MFLRGDSVIIV 94
+F+RGD VI+V
Sbjct: 73 LFVRGDGVILV 83
>gi|307105891|gb|EFN54138.1| hypothetical protein CHLNCDRAFT_135527 [Chlorella variabilis]
Length = 159
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 29 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 88
++V + Q++GR AFDRH N+VL + E PK G ++ + R + + LRG
Sbjct: 18 VTVVDGRQIVGRFMAFDRHMNLVLGDAEEFRKLPPKKGVAEEDR---EQRRVLGLVILRG 74
Query: 89 DSVI 92
D V+
Sbjct: 75 DEVV 78
>gi|118482995|gb|ABK93409.1| unknown [Populus trichocarpa]
Length = 286
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 29 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 88
+++++ QL+G+ AFDRH N+VL + E + +LP KGKK R + + LRG
Sbjct: 19 VTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKKNNEEREDRRTLGLVLLRG 76
Query: 89 DSVI 92
+ VI
Sbjct: 77 EEVI 80
>gi|452987088|gb|EME86844.1| hypothetical protein MYCFIDRAFT_49442 [Pseudocercospora fijiensis
CIRAD86]
Length = 94
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Query: 6 DEDTTGGKTEEEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTEL 62
D + +GG E + LS+ + + ++ + +L GR+ A+D HCN+VL +V E +
Sbjct: 3 DVEDSGGNPVNEPLDLVRLSLNETVFVKLRGDRELQGRLHAYDSHCNLVLGDVTETVYLV 62
Query: 63 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+ + + + + +F+RGDSV+++
Sbjct: 63 DEEDEDNVRTVKKQSE----MLFVRGDSVVLI 90
>gi|15237095|ref|NP_193777.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|30685110|ref|NP_849414.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|79325195|ref|NP_001031682.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|238480869|ref|NP_001154258.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|5262167|emb|CAB45810.1| putative snRNP protein [Arabidopsis thaliana]
gi|7268840|emb|CAB79044.1| putative snRNP protein [Arabidopsis thaliana]
gi|28393634|gb|AAO42236.1| putative snRNP protein [Arabidopsis thaliana]
gi|28827492|gb|AAO50590.1| putative snRNP protein [Arabidopsis thaliana]
gi|222423490|dbj|BAH19715.1| AT4G20440 [Arabidopsis thaliana]
gi|332658930|gb|AEE84330.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|332658931|gb|AEE84331.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|332658932|gb|AEE84332.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|332658933|gb|AEE84333.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
Length = 257
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 10/68 (14%)
Query: 29 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD----RFISKM 84
+++++ QL+G+ AFDRH N+VL + E + +LP KGKK +N++ R + +
Sbjct: 19 VTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKK----INEEREDRRTLGLV 72
Query: 85 FLRGDSVI 92
LRG+ VI
Sbjct: 73 LLRGEEVI 80
>gi|356534803|ref|XP_003535941.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm3-like
isoform 1 [Glycine max]
Length = 97
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 9/89 (10%)
Query: 14 TEEEEFNTGPLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKT 65
+EEE PL+++ +S+ +++ +L G++ A+D+H N+VL +V E+ T +
Sbjct: 3 SEEESAVKEPLNLIWLSLDERIYVKLRSDRELRGKLHAYDQHLNIVLGDVEEIVTTVEID 62
Query: 66 GKGKKKALPVNKDRFISKMFLRGDSVIIV 94
L K R + +F+RGD VI+V
Sbjct: 63 DLLFSFLLQTTK-RTVPFLFVRGDGVILV 90
>gi|297799992|ref|XP_002867880.1| hypothetical protein ARALYDRAFT_492815 [Arabidopsis lyrata subsp.
lyrata]
gi|297313716|gb|EFH44139.1| hypothetical protein ARALYDRAFT_492815 [Arabidopsis lyrata subsp.
lyrata]
Length = 258
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 10/68 (14%)
Query: 29 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD----RFISKM 84
+++++ QL+G+ AFDRH N+VL + E + +LP KGKK +N++ R + +
Sbjct: 19 VTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKK----INEEREDRRTLGLV 72
Query: 85 FLRGDSVI 92
LRG+ VI
Sbjct: 73 LLRGEEVI 80
>gi|255578055|ref|XP_002529898.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
gi|223530625|gb|EEF32501.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
Length = 275
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 29 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 88
+++++ QL+G+ AFDRH N+VL + E + +LP KGKK R + + LRG
Sbjct: 19 VTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKKNNEEREDRRTLGLVLLRG 76
Query: 89 DSVI 92
+ VI
Sbjct: 77 EEVI 80
>gi|346975981|gb|EGY19433.1| hypothetical protein VDAG_09635 [Verticillium dahliae VdLs.17]
Length = 96
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKM 84
V+ + ++ + +L GR+ A+D HCN+VL +V E ++ + + K + R +
Sbjct: 25 VVFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYVVDEDDDEEEAKTIS----RKSEML 80
Query: 85 FLRGDSVIIV 94
F+RGDSV+++
Sbjct: 81 FVRGDSVVLI 90
>gi|303288678|ref|XP_003063627.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454695|gb|EEH52000.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 95
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 48/88 (54%), Gaps = 9/88 (10%)
Query: 15 EEEEFNTGPLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTG 66
EE+ PL ++ +S+ + + ++ G++ A+D+H NM+L +V E T +
Sbjct: 3 EEDTTVKEPLDLIRLSLDERVYVKLRGDREIRGKLHAYDQHLNMILGDVEETITTVEIDD 62
Query: 67 KGKKKALPVNKDRFISKMFLRGDSVIIV 94
+ ++ + K R + +F+RGD+V +V
Sbjct: 63 ETYEEIVKTTK-RAVRYLFVRGDAVTLV 89
>gi|255578051|ref|XP_002529896.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
gi|223530623|gb|EEF32499.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
Length = 275
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 29 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 88
+++++ QL+G+ AFDRH N+VL + E + +LP KGKK R + + LRG
Sbjct: 19 VTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKKNNEEREDRRTLGLVLLRG 76
Query: 89 DSVI 92
+ VI
Sbjct: 77 EEVI 80
>gi|224115254|ref|XP_002332199.1| predicted protein [Populus trichocarpa]
gi|222875306|gb|EEF12437.1| predicted protein [Populus trichocarpa]
Length = 289
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 29 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 88
+++++ QL+G+ AFDRH N+VL + E + +LP KGKK R + + LRG
Sbjct: 19 VTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKKNNEEREDRRTLGLVLLRG 76
Query: 89 DSVI 92
+ VI
Sbjct: 77 EEVI 80
>gi|300120504|emb|CBK20058.2| Like-Sm ribonucleoprotein, core [Blastocystis hominis]
Length = 458
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTEL---PKTGKGKKKALPVNKDRFISK 83
+++ ++ ++ G++ A+D+H NMV+ N +E T + P+T KK N R
Sbjct: 386 VVIKCRHGREIRGKLLAYDQHLNMVVSNAKETQTIVTVDPETNNEVKK----NVVRNFEA 441
Query: 84 MFLRGDSVIIV 94
++LRGD+VI++
Sbjct: 442 LYLRGDAVILI 452
>gi|171680906|ref|XP_001905397.1| hypothetical protein [Podospora anserina S mat+]
gi|170940411|emb|CAP65637.1| unnamed protein product [Podospora anserina S mat+]
Length = 97
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKM 84
V+ + ++ + +L GR+ A+D HCN+VL +V E ++ + + K + R +
Sbjct: 25 VVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEDEENDEEVKTI----SRKSEML 80
Query: 85 FLRGDSVIIV 94
F+RGDSV+++
Sbjct: 81 FVRGDSVVLI 90
>gi|452845306|gb|EME47239.1| hypothetical protein DOTSEDRAFT_124864 [Dothistroma septosporum
NZE10]
Length = 95
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 85
++ + ++ + +L GR+ A+D HCN+VL +V E + + + ++ V K +F
Sbjct: 26 IVFVKLRGDRELQGRLHAYDSHCNLVLGDVSETVYVVDEEDE-QENVRTVKKQS--EMLF 82
Query: 86 LRGDSVIIV 94
+RGDSV+++
Sbjct: 83 VRGDSVVLI 91
>gi|124028416|ref|YP_001013736.1| putative snRNP Sm protein [Hyperthermus butylicus DSM 5456]
gi|123979110|gb|ABM81391.1| putative snRNP Sm protein [Hyperthermus butylicus DSM 5456]
Length = 77
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 41/70 (58%), Gaps = 14/70 (20%)
Query: 25 SVLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM 84
S++++ +K ++ GR++++D+H N+VLE+ E++ + + R + +
Sbjct: 15 SIVLVKLKGANEVRGRLKSYDQHLNLVLEDAEEIYED--------------GRTRKLGTI 60
Query: 85 FLRGDSVIIV 94
+RGD+V+++
Sbjct: 61 VIRGDTVLLI 70
>gi|409040887|gb|EKM50373.1| hypothetical protein PHACADRAFT_104351 [Phanerochaete carnosa
HHB-10118-sp]
Length = 105
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFISKMF 85
L ++V + +G++ AFDRH N+VL E PK G+ +A P + R + +
Sbjct: 9 LKVTVNDGRAFVGQMLAFDRHMNLVLAECEEFRRVRPKKKSGETEAGPAQEMKRTLGLVI 68
Query: 86 LRGDSVI 92
LRG++V+
Sbjct: 69 LRGETVV 75
>gi|429850300|gb|ELA25589.1| u6 small nuclear ribonucleoprotein [Colletotrichum
gloeosporioides Nara gc5]
Length = 96
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKM 84
V+ + ++ + +L GR+ A+D HCN+VL V E ++ + K + R +
Sbjct: 25 VVFVKLRGDRELKGRLHAYDSHCNLVLGEVEETIYVVDEDEEDEEVKTIS----RKSEML 80
Query: 85 FLRGDSVIIV 94
F+RGDSV+++
Sbjct: 81 FVRGDSVVLI 90
>gi|297794953|ref|XP_002865361.1| hypothetical protein ARALYDRAFT_494537 [Arabidopsis lyrata subsp.
lyrata]
gi|297311196|gb|EFH41620.1| hypothetical protein ARALYDRAFT_494537 [Arabidopsis lyrata subsp.
lyrata]
Length = 256
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 29 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 88
+++++ QL+G+ AFDRH N+VL + E + +LP KK + R + + LRG
Sbjct: 19 VTIQDGRQLIGKFMAFDRHMNLVLGDCEE-FRKLPPAKGSKKTKEDREERRTLGLVLLRG 77
Query: 89 DSVI 92
+ VI
Sbjct: 78 EEVI 81
>gi|396485483|ref|XP_003842182.1| similar to U6 snRNA-associated Sm-like protein LSm3
[Leptosphaeria maculans JN3]
gi|312218758|emb|CBX98703.1| similar to U6 snRNA-associated Sm-like protein LSm3
[Leptosphaeria maculans JN3]
Length = 96
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKM 84
++++ ++ + +L GR+ A+D HCN+VL +V E ++ + + + V K +
Sbjct: 21 IVIVKLRGDRELKGRLHAYDSHCNLVLGDVEETIFVADEEEEDLEPRVRTVKKQS--EML 78
Query: 85 FLRGDSVIIV 94
F+RGDSV+++
Sbjct: 79 FVRGDSVVLI 88
>gi|169849793|ref|XP_001831595.1| SMB [Coprinopsis cinerea okayama7#130]
gi|116507233|gb|EAU90128.1| SMB [Coprinopsis cinerea okayama7#130]
Length = 168
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
L +++++ L G++ AFDRH N+VL + E PK G++ A R + + L
Sbjct: 9 LKVTIQDGRALTGQMLAFDRHMNLVLADCEEFRRVRPKKKAGEEVAPEQELKRTLGLVIL 68
Query: 87 RGDSVIIV 94
RG++V+ +
Sbjct: 69 RGEAVVSI 76
>gi|241959048|ref|XP_002422243.1| U6 snRNA-associated Sm-like protein, putative [Candida
dubliniensis CD36]
gi|223645588|emb|CAX40247.1| U6 snRNA-associated Sm-like protein, putative [Candida
dubliniensis CD36]
Length = 96
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKAL-PVNKDRFISKMF 85
+++ ++ +L G+++ +D HCNMVL + +E + G + + P+ K + +F
Sbjct: 26 VLVKLRGARELKGKLQGYDSHCNMVLSDAQETIYTSNEGGDSEDSSKEPIVKKT--AMVF 83
Query: 86 LRGDSVIIV 94
+RGDSVI++
Sbjct: 84 VRGDSVILI 92
>gi|310789782|gb|EFQ25315.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 96
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKM 84
V+ + ++ + +L GR+ A+D HCN+VL V E ++ + K + R +
Sbjct: 25 VVFVKLRGDRELKGRLHAYDSHCNLVLGEVEETIYVVDEDEEDEEVKTIS----RKSEML 80
Query: 85 FLRGDSVIIV 94
F+RGDSV+++
Sbjct: 81 FVRGDSVVLI 90
>gi|156089511|ref|XP_001612162.1| LSM domain containing protein [Babesia bovis]
gi|154799416|gb|EDO08594.1| LSM domain containing protein [Babesia bovis]
Length = 89
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWT--ELPKTGKGKKKALPVNKDRFISKM 84
+ + K +++G++ A+D HCNM+L + E +T EL T + + +KD + +
Sbjct: 17 VYLKCKGGREIVGQLHAYDEHCNMLLSDAIETFTSVELDPTTNQEVTTI-TSKDSGV--V 73
Query: 85 FLRGDSVIIV 94
F+RGD++I++
Sbjct: 74 FVRGDALILL 83
>gi|365991154|ref|XP_003672406.1| hypothetical protein NDAI_0J02710 [Naumovozyma dairenensis CBS
421]
gi|343771181|emb|CCD27163.1| hypothetical protein NDAI_0J02710 [Naumovozyma dairenensis CBS
421]
Length = 85
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 37 LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
L+G ++AFD HCN+VL + E EL G + + +R +F+RGD+V ++
Sbjct: 28 LVGTLQAFDSHCNIVLSDAIETIYELDDEGDLQ------SVERNSEMIFVRGDTVTLI 79
>gi|170105048|ref|XP_001883737.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164641372|gb|EDR05633.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 103
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
L +++ + L G++ AFDRH N+VL + E PK G++ A R + + L
Sbjct: 9 LKVTINDGRALTGQMLAFDRHMNLVLADCEEFRRVRPKKKAGEETAPEQEMKRTLGLVIL 68
Query: 87 RGDSVI 92
RG++V+
Sbjct: 69 RGETVV 74
>gi|344231234|gb|EGV63116.1| LSM-domain-containing protein [Candida tenuis ATCC 10573]
Length = 88
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 11/69 (15%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMF 85
+++ ++ ++ G+++ +D HCNMVL + E ++ E +GK + +F
Sbjct: 25 VLVKLRGAREMKGKLQGYDSHCNMVLSDATEYIYAENQDKPQGKSTDM----------VF 74
Query: 86 LRGDSVIIV 94
+RGDSVI++
Sbjct: 75 IRGDSVILI 83
>gi|238880144|gb|EEQ43782.1| hypothetical protein CAWG_02031 [Candida albicans WO-1]
Length = 96
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMF 85
+++ ++ +L G+++ +D HCNMVL + E ++T P+ K + +F
Sbjct: 26 VLVKLRGARELKGKLQGYDSHCNMVLSDAEETIYTSNEDDDSENTSEEPIVKKT--AMVF 83
Query: 86 LRGDSVIIV 94
+RGDSVI++
Sbjct: 84 VRGDSVILI 92
>gi|453087554|gb|EMF15595.1| Sm-like ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 95
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++ + +L GR+ A+D HCN+VL +V E + +A+ + +F+
Sbjct: 27 VFVKLRGDRELAGRLHAYDSHCNLVLGDVTETVYVWDDEDEDNVRAVKKQSE----MLFV 82
Query: 87 RGDSVIIV 94
RGDSV+++
Sbjct: 83 RGDSVVLI 90
>gi|225463717|ref|XP_002263359.1| PREDICTED: small nuclear ribonucleoprotein-associated protein B'
[Vitis vinifera]
gi|147774905|emb|CAN61706.1| hypothetical protein VITISV_001610 [Vitis vinifera]
Length = 276
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 11/68 (16%)
Query: 29 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD----RFISKM 84
+++++ QL+G+ AFDRH N+VL + E + +LP KGKK N++ R + +
Sbjct: 19 VTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKK-----NEEREERRTLGLV 71
Query: 85 FLRGDSVI 92
LRG+ VI
Sbjct: 72 LLRGEEVI 79
>gi|325183158|emb|CCA17616.1| U6 snRNAassociated Smlike protein LSm3 putative [Albugo laibachii
Nc14]
Length = 92
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 9/80 (11%)
Query: 23 PLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALP 74
PL ++ +S+ + + +L G + A+D+H NMVL V E T + + + + +
Sbjct: 7 PLDLVKLSIGERIYVKCRGDRELRGLLHAYDQHLNMVLSEVEETVT-VQELDEETYEEII 65
Query: 75 VNKDRFISKMFLRGDSVIIV 94
R + +F+RGD+VI+V
Sbjct: 66 KQSKRQVEMLFIRGDAVILV 85
>gi|308161048|gb|EFO63510.1| U6 snRNA-associated Sm-like protein LSm3, putative [Giardia lamblia
P15]
Length = 132
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 18/73 (24%)
Query: 24 LSVLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 83
+SVL+ +NN+ + G + +FD H N++L N E L +RF
Sbjct: 71 ISVLL---QNNSSITGLLASFDEHMNLILINAEETGHSL---------------NRFFPL 112
Query: 84 MFLRGDSVIIVLR 96
+ +RGDS+I V R
Sbjct: 113 LVIRGDSIIFVTR 125
>gi|409081623|gb|EKM81982.1| hypothetical protein AGABI1DRAFT_112159 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426196857|gb|EKV46785.1| hypothetical protein AGABI2DRAFT_136942 [Agaricus bisporus var.
bisporus H97]
Length = 178
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
L +++ + L G++ AFDRH N+VL + E PK G++ A R + + L
Sbjct: 19 LKVTINDGRALTGQMLAFDRHMNLVLADCEEFRRVRPKKKAGEETAPEQEMKRTLGLVIL 78
Query: 87 RGDSVIIV 94
RG++V+ +
Sbjct: 79 RGETVVSI 86
>gi|363748022|ref|XP_003644229.1| hypothetical protein Ecym_1162 [Eremothecium cymbalariae
DBVPG#7215]
gi|356887861|gb|AET37412.1| hypothetical protein Ecym_1162 [Eremothecium cymbalariae
DBVPG#7215]
Length = 83
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 15/68 (22%)
Query: 36 QLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK----MFLRGDSV 91
+L G ++AFD HCN+VL + E EL RF +K +F+RGDSV
Sbjct: 26 KLTGTLQAFDSHCNIVLSDAEETIYELVDGNL-----------RFETKTSEMIFVRGDSV 74
Query: 92 IIVLRNPK 99
+V P+
Sbjct: 75 TLVTAQPE 82
>gi|15241519|ref|NP_199263.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
gi|79329893|ref|NP_001032011.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
gi|9758703|dbj|BAB09157.1| unnamed protein product [Arabidopsis thaliana]
gi|14596137|gb|AAK68796.1| Unknown protein [Arabidopsis thaliana]
gi|18377438|gb|AAL66885.1| unknown protein [Arabidopsis thaliana]
gi|51971895|dbj|BAD44612.1| unknown protein [Arabidopsis thaliana]
gi|62320496|dbj|BAD95039.1| hypothetical protein [Arabidopsis thaliana]
gi|332007733|gb|AED95116.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
gi|332007734|gb|AED95117.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
Length = 254
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 29 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 88
+++++ QL+G+ AFDRH N+VL + E + +LP KK + R + + LRG
Sbjct: 19 VTIQDGRQLIGKFMAFDRHMNLVLGDCEE-FRKLPPAKGNKKTNEEREERRTLGLVLLRG 77
Query: 89 DSVI 92
+ VI
Sbjct: 78 EEVI 81
>gi|51970288|dbj|BAD43836.1| unknown protein [Arabidopsis thaliana]
Length = 254
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 9/68 (13%)
Query: 29 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD----RFISKM 84
+++++ QL+G+ AFDRH N+VL + E + +LP KG KK N++ R + +
Sbjct: 19 VTIQDGRQLIGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGNKK---TNEEREERRTLGLV 73
Query: 85 FLRGDSVI 92
LRG+ VI
Sbjct: 74 LLRGEEVI 81
>gi|296423190|ref|XP_002841138.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637372|emb|CAZ85329.1| unnamed protein product [Tuber melanosporum]
Length = 95
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMF 85
+ + ++ + +L GR+ A+D HCN+VL +V E ++T G ++ + +F
Sbjct: 25 VFVKLRGDRELRGRLHAYDSHCNLVLGDVEETIYT----VGDDEEDDSVKTIKKQSEMLF 80
Query: 86 LRGDSVIIV 94
+RGDSV+++
Sbjct: 81 VRGDSVVLI 89
>gi|448090794|ref|XP_004197162.1| Piso0_004401 [Millerozyma farinosa CBS 7064]
gi|448095234|ref|XP_004198193.1| Piso0_004401 [Millerozyma farinosa CBS 7064]
gi|359378584|emb|CCE84843.1| Piso0_004401 [Millerozyma farinosa CBS 7064]
gi|359379615|emb|CCE83812.1| Piso0_004401 [Millerozyma farinosa CBS 7064]
Length = 90
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 85
++++ ++ ++ GR++ +D HCNMVL + E +L G+ V K + F
Sbjct: 24 LVLVKLRGAREMKGRLQGYDSHCNMVLSDAVEYIYDL---GEEVNSNPTVKKSEMV---F 77
Query: 86 LRGDSVIIVLRNP 98
+RGDSVI++ NP
Sbjct: 78 VRGDSVILI--NP 88
>gi|347841002|emb|CCD55574.1| similar to U6 snRNA-associated Sm-like protein LSm3 [Botryotinia
fuckeliana]
Length = 98
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 40/69 (57%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 85
V+ + ++ + +L GR+ A+D HCN+VL +V E + ++ + + + +F
Sbjct: 25 VVYVKLRGDRELKGRLHAYDSHCNLVLGDVVETIYVVEESEDDDGEEIVKTVVKKSEMLF 84
Query: 86 LRGDSVIIV 94
+RGDSVI++
Sbjct: 85 VRGDSVILI 93
>gi|389739317|gb|EIM80511.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 179
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFISKMF 85
L +++ + L G++ AFDRH N+VL E PK G+ +A P + R + +
Sbjct: 19 LKVTINDGRALTGQMLAFDRHMNLVLAECEEFRRVRPKKKAGEAEAGPEQEMKRTLGLVI 78
Query: 86 LRGDSVIIV 94
LRG++V+ +
Sbjct: 79 LRGETVVSI 87
>gi|332796496|ref|YP_004457996.1| Sm1 protein [Acidianus hospitalis W1]
gi|332694231|gb|AEE93698.1| archaeal Sm1 protein [Acidianus hospitalis W1]
Length = 76
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 42/70 (60%), Gaps = 14/70 (20%)
Query: 25 SVLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM 84
S++++ +K N ++ G ++++D+H N+VL + E+ ++ G GKK I +
Sbjct: 15 SLVLVKLKGNKEVRGLLKSYDQHMNLVLSDSEEIQSD----GSGKK----------IGTI 60
Query: 85 FLRGDSVIIV 94
+RGD+VI++
Sbjct: 61 VIRGDNVILI 70
>gi|302686860|ref|XP_003033110.1| hypothetical protein SCHCODRAFT_67091 [Schizophyllum commune
H4-8]
gi|300106804|gb|EFI98207.1| hypothetical protein SCHCODRAFT_67091 [Schizophyllum commune
H4-8]
Length = 179
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%)
Query: 29 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 88
+++ + QL+G++ AFDRH N+VL E PK G++ R + + LRG
Sbjct: 21 VTINDGRQLVGQMLAFDRHMNLVLAECEEFRRIRPKKKPGQETQPEQEVKRALGLVILRG 80
Query: 89 DSVI 92
++V+
Sbjct: 81 ETVV 84
>gi|395331807|gb|EJF64187.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 181
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFISKMF 85
L +++ + +G++ AFDRH N+VL E PK G+ +A P+ + R + +
Sbjct: 19 LKVTINDGRAFVGQMLAFDRHMNLVLAECEEFRRVRPKKKPGETEAGPMQEMKRTLGLVI 78
Query: 86 LRGDSVI 92
LRG++V+
Sbjct: 79 LRGETVV 85
>gi|50303649|ref|XP_451766.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640898|emb|CAH02159.1| KLLA0B05203p [Kluyveromyces lactis]
Length = 83
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 7/68 (10%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + +++ +L+G ++AFD HCN+VL + +E EL +G K +RF +F+
Sbjct: 17 VYVKLRDARELVGTLQAFDSHCNIVLSDSKETIYELV---EGDLK----TTERFSEMIFV 69
Query: 87 RGDSVIIV 94
RG V +V
Sbjct: 70 RGGLVALV 77
>gi|392565532|gb|EIW58709.1| Sm-like ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 178
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFISKMF 85
L +++ + +G++ AFDRH N+VL E PK G+ +A P+ + R + +
Sbjct: 19 LKVTINDGRAFVGQMLAFDRHMNLVLAECEEFRRVRPKKKAGETEAGPMQEMKRTLGLVI 78
Query: 86 LRGDSVI 92
LRG++V+
Sbjct: 79 LRGETVV 85
>gi|303279124|ref|XP_003058855.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460015|gb|EEH57310.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 403
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 14/83 (16%)
Query: 26 VLMMSVKNNTQLLGR----VRAFDRHCNMVLENVREMWT--------ELPKTGKGKKKAL 73
V+M++ K+ + G V+AFD++ NM+L++VRE++T + K GK + K
Sbjct: 289 VVMVTTKHKLGIRGHAFAYVKAFDKYMNMLLQDVREIYTVRLKHRVEYVDKNGKTRYKIK 348
Query: 74 P--VNKDRFISKMFLRGDSVIIV 94
++R + ++FLRG+ ++ V
Sbjct: 349 HRLEGRERTMDQVFLRGEQIVTV 371
>gi|358382874|gb|EHK20544.1| hypothetical protein TRIVIDRAFT_90246 [Trichoderma virens Gv29-8]
Length = 97
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 85
V+ + ++ + +L G++ A+D HCN+VL +V E + + + +++ +F
Sbjct: 25 VVFVKLRGDRELKGKLHAYDSHCNLVLGDVEETIYAVDDDEEEGDEVKTISRKS--EMLF 82
Query: 86 LRGDSVIIV 94
+RGDSV+++
Sbjct: 83 VRGDSVVLI 91
>gi|290992103|ref|XP_002678674.1| predicted protein [Naegleria gruberi]
gi|284092287|gb|EFC45930.1| predicted protein [Naegleria gruberi]
Length = 83
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Query: 29 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 88
+++++ Q++G+ AFD+ N+V+ + E +PK KG++ V + R + + +RG
Sbjct: 15 ITLQDGRQIVGKFMAFDKFMNLVVADCEEFRKIIPKGSKGEE----VEQKRSLGFLLIRG 70
Query: 89 DSVI-IVLRNP 98
+++I IV+ P
Sbjct: 71 ENIISIVVEGP 81
>gi|324510990|gb|ADY44587.1| Small nuclear ribonucleoprotein-associated protein B [Ascaris
suum]
Length = 165
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 29 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 88
++++++ +G RAFD+H N++L E PK G KK+ P + R + + LRG
Sbjct: 19 VALQDSRTFVGYFRAFDKHMNILLSECEEFRAIKPKPG---KKSAPEEEMRTLGLVLLRG 75
Query: 89 DSVI 92
+ ++
Sbjct: 76 EHIV 79
>gi|159118879|ref|XP_001709658.1| U6 snRNA-associated Sm-like protein LSm3, putative [Giardia lamblia
ATCC 50803]
gi|157437775|gb|EDO81984.1| U6 snRNA-associated Sm-like protein LSm3, putative [Giardia lamblia
ATCC 50803]
Length = 126
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 18/73 (24%)
Query: 24 LSVLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 83
+SVL+ +NN+ + G + +FD H N++L N E L +RF
Sbjct: 65 VSVLL---QNNSSITGLLASFDEHMNLILINAEETGHSL---------------NRFFPL 106
Query: 84 MFLRGDSVIIVLR 96
+ +RGDS+I V R
Sbjct: 107 LVIRGDSIIFVTR 119
>gi|392576848|gb|EIW69978.1| hypothetical protein TREMEDRAFT_68409 [Tremella mesenterica DSM
1558]
Length = 95
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++ + L G + A+D H N+VL V E + G+ A P + R +F+
Sbjct: 24 VFIKLRGDRTLTGNLHAYDAHMNLVLSQVEE-NIHIVDVGEDGTAAPPRIERRGFEMLFI 82
Query: 87 RGDSVII 93
RGDSVI+
Sbjct: 83 RGDSVIL 89
>gi|395853650|ref|XP_003799317.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Otolemur garnettii]
Length = 102
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++N+ +L R+ A+D+H NM+ +V E T + + ++ K R I +F+
Sbjct: 29 IYVKMRNDRELRSRLHAYDQHLNMIYGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFV 87
Query: 87 RGDSVIIV 94
RGD V++V
Sbjct: 88 RGDGVVLV 95
>gi|428183707|gb|EKX52564.1| hypothetical protein GUITHDRAFT_48153, partial [Guillardia theta
CCMP2712]
Length = 75
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 29 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 88
+++++ QL+G+ AFD+H N+VL + E K GKG+++ + R + + LRG
Sbjct: 8 VTIEDGRQLVGKFMAFDKHMNIVLGDCDEFRRLSVKGGKGEER----EEKRSLGLVILRG 63
Query: 89 DSVI 92
+SV+
Sbjct: 64 ESVV 67
>gi|255087196|ref|XP_002505521.1| predicted protein [Micromonas sp. RCC299]
gi|226520791|gb|ACO66779.1| predicted protein [Micromonas sp. RCC299]
Length = 95
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++ ++ G++ A+D+H NM+L +V E T + + ++ + K R + +F+
Sbjct: 23 VYVKLRGEREIRGKLHAYDQHLNMILGDVEETITTVEIDDETYEEIIKTTK-RAVRFLFV 81
Query: 87 RGDSVIIV 94
RGD+V +V
Sbjct: 82 RGDAVTLV 89
>gi|408389243|gb|EKJ68711.1| hypothetical protein FPSE_11107 [Fusarium pseudograminearum
CS3096]
Length = 96
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKM 84
V+ + ++ + +L G++ A+D HCN+VL V E ++T + K + R +
Sbjct: 25 VVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYTVDEDDDDDELKTI----SRKSEML 80
Query: 85 FLRGDSVIIV 94
F+RGDSV+++
Sbjct: 81 FVRGDSVVLI 90
>gi|302891811|ref|XP_003044787.1| hypothetical protein NECHADRAFT_61990 [Nectria haematococca mpVI
77-13-4]
gi|256725712|gb|EEU39074.1| hypothetical protein NECHADRAFT_61990 [Nectria haematococca mpVI
77-13-4]
Length = 96
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKM 84
V+ + ++ + +L G++ A+D HCN+VL V E ++T + K + R +
Sbjct: 25 VVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYTVDEDDEDDEVKTI----SRKSEML 80
Query: 85 FLRGDSVIIV 94
F+RGDSV+++
Sbjct: 81 FVRGDSVVLI 90
>gi|346320143|gb|EGX89744.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Cordyceps
militaris CM01]
Length = 96
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 11/73 (15%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK-- 83
V+ + ++ + +L G++ A+D HCN+VL V E T G + + + IS+
Sbjct: 25 VVFVKLRGDRELKGKLHAYDSHCNLVLGEVEE-------TIYGVDEEDDEEEAKTISRKS 77
Query: 84 --MFLRGDSVIIV 94
+F+RGDSV+++
Sbjct: 78 EMLFVRGDSVVLI 90
>gi|320587366|gb|EFW99846.1| u6 small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 99
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 40/73 (54%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++ + +L GR+ A+D HCN+VL +V E + + + + R +F+
Sbjct: 26 VFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYITDEDDEDESEQEVRTVSRKSEMLFV 85
Query: 87 RGDSVIIVLRNPK 99
RGDSV+++ P+
Sbjct: 86 RGDSVVLISPVPQ 98
>gi|326516156|dbj|BAJ88101.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 123
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 43 AFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
A+D+H NM+L +V E+ T + + ++ + +K R I +F+RGD VI+V
Sbjct: 66 AYDQHLNMILGDVEEIVTSIEIDDETYEEIVRTSK-RTIPYLFVRGDGVILV 116
>gi|331225531|ref|XP_003325436.1| U6 snRNA-associated Sm-like protein LSm3 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|309304426|gb|EFP81017.1| U6 snRNA-associated Sm-like protein LSm3 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 97
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 12 GKTEEEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
G EE F+ LS+ +++ ++ + L G + A+D H NMVL +V E T +
Sbjct: 6 GDGVEEPFDLIRLSLSERVLIKLRGDRVLNGTLHAYDGHMNMVLSDVIETITVVEPAANP 65
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIV 94
+ + R +F+RGD V++V
Sbjct: 66 DDEPIIRTVKRNCEMLFVRGDGVVLV 91
>gi|253744911|gb|EET01046.1| Small nuclear ribonucleoprotein Sm D2, putative [Giardia
intestinalis ATCC 50581]
Length = 83
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+++ +++ + G ++A+DRH N+V E W E K KK+ L
Sbjct: 23 VLVQLRSGHFIAGVLKAYDRHLNLVFSEATETWEENGIEYKEDKKSF-----------ML 71
Query: 87 RGDSVIIVLRN 97
RGD+VI+V+ N
Sbjct: 72 RGDNVIMVVSN 82
>gi|296242979|ref|YP_003650466.1| LSM family small nuclear ribonucleoprotein [Thermosphaera
aggregans DSM 11486]
gi|296095563|gb|ADG91514.1| Small nuclear ribonucleoprotein, LSM family [Thermosphaera
aggregans DSM 11486]
Length = 76
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 42/70 (60%), Gaps = 14/70 (20%)
Query: 25 SVLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM 84
+++++ +K++ L G++R++D+H N+VL++V E+ G+G R + +
Sbjct: 15 NIVLIKIKDDITLRGKLRSYDQHLNIVLDDVEEI-------GEG-------GSTRKLGTV 60
Query: 85 FLRGDSVIIV 94
+RGD+V+ +
Sbjct: 61 VIRGDTVVFI 70
>gi|227827656|ref|YP_002829436.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.14.25]
gi|227830352|ref|YP_002832132.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
L.S.2.15]
gi|229579169|ref|YP_002837567.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
Y.G.57.14]
gi|229582076|ref|YP_002840475.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
Y.N.15.51]
gi|229584860|ref|YP_002843362.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.16.27]
gi|238619824|ref|YP_002914650.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.16.4]
gi|284997857|ref|YP_003419624.1| Like-Sm ribonucleoprotein, core [Sulfolobus islandicus L.D.8.5]
gi|385773326|ref|YP_005645892.1| Sm ribonucleoprotein core-like protein [Sulfolobus islandicus
HVE10/4]
gi|385775964|ref|YP_005648532.1| archaeal Sm1 protein [Sulfolobus islandicus REY15A]
gi|227456800|gb|ACP35487.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus L.S.2.15]
gi|227459452|gb|ACP38138.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.14.25]
gi|228009883|gb|ACP45645.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus Y.G.57.14]
gi|228012792|gb|ACP48553.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus Y.N.15.51]
gi|228019910|gb|ACP55317.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.16.27]
gi|238380894|gb|ACR41982.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.16.4]
gi|284445752|gb|ADB87254.1| Like-Sm ribonucleoprotein, core [Sulfolobus islandicus L.D.8.5]
gi|323474712|gb|ADX85318.1| archaeal Sm1 protein [Sulfolobus islandicus REY15A]
gi|323477440|gb|ADX82678.1| Sm ribonucleoprotein core-like protein [Sulfolobus islandicus
HVE10/4]
Length = 76
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 18/85 (21%)
Query: 10 TGGKTEEEEFNTGPLSVLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGK 69
T K E N +++++ +K N ++ G +R++D+H N+VL + E+ ++ G GK
Sbjct: 4 TAHKVLAESLN----NLVLVKLKGNKEVRGTLRSYDQHMNLVLSDSEEIQSD----GSGK 55
Query: 70 KKALPVNKDRFISKMFLRGDSVIIV 94
K + + +RGD+VI++
Sbjct: 56 K----------LGTIVIRGDNVILI 70
>gi|358397340|gb|EHK46715.1| hypothetical protein TRIATDRAFT_299236 [Trichoderma atroviride
IMI 206040]
Length = 97
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 85
V+ + ++ + +L G++ A+D HCN+VL V E + + + +++ +F
Sbjct: 25 VVFVKLRGDRELKGKLHAYDSHCNLVLGEVEETIYAVDDDEEESDEVKTISRKS--EMLF 82
Query: 86 LRGDSVIIV 94
+RGDSV+++
Sbjct: 83 VRGDSVVLI 91
>gi|302309894|ref|XP_002999599.1| hypothetical protein [Candida glabrata CBS 138]
gi|196049204|emb|CAR58072.1| unnamed protein product [Candida glabrata]
Length = 85
Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 7/56 (12%)
Query: 39 GRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
G ++AFD HCN+VL + E EL G+ K +++R +F+RGDSV ++
Sbjct: 30 GVLQAFDSHCNIVLSDAVETIYELV---DGELK----SQERASEMIFVRGDSVTLI 78
>gi|156097859|ref|XP_001614962.1| U6 snRNA-associated Sm-like protein LSm3 [Plasmodium vivax Sal-1]
gi|148803836|gb|EDL45235.1| U6 snRNA-associated Sm-like protein LSm3, putative [Plasmodium
vivax]
Length = 91
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE--LPKTGKGKKKALPVNKDRFISKM 84
+ + K + ++ G++ A+D H NM+L N E + + + + KK +R + +
Sbjct: 22 VFLKCKGDREIRGKLDAYDNHLNMILSNAHETYKQSVVENDEESVKKI-----ERNLDMV 76
Query: 85 FLRGDSVIIV 94
F+RGDS+I+V
Sbjct: 77 FVRGDSIILV 86
>gi|336260805|ref|XP_003345195.1| hypothetical protein SMAC_07871 [Sordaria macrospora k-hell]
gi|380088006|emb|CCC05133.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 97
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 85
V+ + ++ + +L GR+ A+D HCN+VL V E + + +++ +F
Sbjct: 25 VVCVKLRGDRELKGRLHAYDSHCNLVLGEVEETIYVVDDEDADEDDLKTISRKS--EMLF 82
Query: 86 LRGDSVIIV 94
+RGDSV+++
Sbjct: 83 VRGDSVVLI 91
>gi|296809782|ref|XP_002845229.1| U6 snRNP-associated protein Lsm3 [Arthroderma otae CBS 113480]
gi|238842617|gb|EEQ32279.1| U6 snRNP-associated protein Lsm3 [Arthroderma otae CBS 113480]
Length = 109
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 85
V+ + ++ + +L GR+ A+D HCN+VL +V E + + G++ + K +F
Sbjct: 27 VVFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYIVEEDEAGEETVKTIKKQE--EMLF 84
Query: 86 LRG 88
+RG
Sbjct: 85 VRG 87
>gi|156083891|ref|XP_001609429.1| small nuclear ribonucleoprotein E [Babesia bovis T2Bo]
gi|154796680|gb|EDO05861.1| small nuclear ribonucleoprotein E, putative [Babesia bovis]
Length = 89
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 13/80 (16%)
Query: 19 FNTGPLSVLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD 78
F +G + + + N ++ G++R FD + NMVLE+V E++ + K +++AL
Sbjct: 23 FTSGTRVQIWLYDQPNLKIEGKIRGFDEYMNMVLEDVEELYVK-----KQERRAL----- 72
Query: 79 RFISKMFLRGDSVIIVLRNP 98
+ L+GD++ ++ P
Sbjct: 73 ---GTILLKGDAMALITAAP 89
>gi|284174982|ref|ZP_06388951.1| small nuclear riboprotein protein (snRNP-2) [Sulfolobus
solfataricus 98/2]
gi|384434272|ref|YP_005643630.1| Sm ribonucleoprotein-like protein [Sulfolobus solfataricus 98/2]
gi|261602426|gb|ACX92029.1| Like-Sm ribonucleoprotein core [Sulfolobus solfataricus 98/2]
Length = 76
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 18/85 (21%)
Query: 10 TGGKTEEEEFNTGPLSVLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGK 69
T K E N +++++ +K N ++ G +R++D+H N+VL + E+ ++ G GK
Sbjct: 4 TAHKVLAESLN----NLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSD----GSGK 55
Query: 70 KKALPVNKDRFISKMFLRGDSVIIV 94
K + + +RGD+VI++
Sbjct: 56 K----------LGTIVIRGDNVILI 70
>gi|443925698|gb|ELU44474.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 122
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 8 DTTGGKTEEEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK 64
D G +E F+ LS+ + + ++ + +L G + A+D H N+++ +V E +
Sbjct: 3 DVAGSGAVQEPFDLIRLSLSERVYVKLRGDRELTGVLHAYDGHMNLIMSDVEESIMIVEN 62
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+ + V K R + +F+RGD VI+V
Sbjct: 63 PENPENPNVKVAK-RNVEMLFVRGDGVILV 91
>gi|412991162|emb|CCO16007.1| predicted protein [Bathycoccus prasinos]
Length = 246
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 24/97 (24%)
Query: 22 GPLSVLMMSV--KNNTQLLGR------------VRAFDRHCNMVLENVREMWTELPK--- 64
GPLS+L ++ K +++ R + AFD++ N V ++ E ++ +
Sbjct: 115 GPLSLLYRALHEKKRVKIVTRNERGVRGCMECNISAFDKYFNFVAHDIEERYSVRVRKEK 174
Query: 65 ---TGKG----KKKALPVNKDRFISKMFLRGDSVIIV 94
GKG +++ + ++R +S+MFLRG+SV++V
Sbjct: 175 EYVNGKGETKTRRRRVIEQRERKVSQMFLRGESVVLV 211
>gi|336363832|gb|EGN92203.1| hypothetical protein SERLA73DRAFT_147568 [Serpula lacrymans var.
lacrymans S7.3]
gi|336380958|gb|EGO22110.1| hypothetical protein SERLADRAFT_394784 [Serpula lacrymans var.
lacrymans S7.9]
Length = 100
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFISKMF 85
L +++ + L G++ AFDRH N+VL + E PK G+ + P + R + +
Sbjct: 19 LKVTINDGRALTGQMLAFDRHMNLVLADCEEFRRVRPKKKAGETETPPEQEMKRALGLVI 78
Query: 86 LRGDSVI 92
LRG++V+
Sbjct: 79 LRGETVV 85
>gi|168011312|ref|XP_001758347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690382|gb|EDQ76749.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 152
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 30/45 (66%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 71
+ +++++ QL+G+ AFDRH N+VL + E+ PK GK +++
Sbjct: 17 IRVTIQDGRQLVGKFMAFDRHMNLVLGDCEELRRVPPKKGKSQEE 61
>gi|406602048|emb|CCH46368.1| hypothetical protein BN7_5961 [Wickerhamomyces ciferrii]
Length = 77
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 13/83 (15%)
Query: 12 GKTEEEEFNTGPLSVLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 71
+TE ++ ++ PL ++ +LL +A+D HCN+VL + E ++ + G + K
Sbjct: 2 SETEVKQTSSEPLDLI--------RLLLDEQAYDSHCNIVLSDAIETIYDIEE-GSDELK 52
Query: 72 ALPVNKDRFISKMFLRGDSVIIV 94
+ N + +F+RGDSVI++
Sbjct: 53 STTKNSE----ILFVRGDSVILI 71
>gi|260949819|ref|XP_002619206.1| hypothetical protein CLUG_00365 [Clavispora lusitaniae ATCC 42720]
gi|238846778|gb|EEQ36242.1| hypothetical protein CLUG_00365 [Clavispora lusitaniae ATCC 42720]
Length = 164
Score = 38.5 bits (88), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 9/76 (11%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREM------WTELPKTGKGKKKALPVNKD-R 79
L +S + G++ AFD+H N+VL + E + EL K G + + VN+D R
Sbjct: 52 LQISTLDGRSFTGQLLAFDKHMNLVLADTEEARTTKKSYQELAKAKVGSQ--VKVNEDKR 109
Query: 80 FISKMFLRGDSVIIVL 95
F+ + LRG+ V+ V+
Sbjct: 110 FLGLIILRGEQVVSVV 125
>gi|123493455|ref|XP_001326296.1| Sm protein [Trichomonas vaginalis G3]
gi|121909208|gb|EAY14073.1| Sm protein [Trichomonas vaginalis G3]
Length = 84
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 31 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 90
V+ +L G + A+D H N++L +V E L K G K +PV +++ I +F+RGD
Sbjct: 23 VQEGQELEGVLHAYDEHYNIILGDVLESIMGLDKNG----KFIPVRQNQ-IDMLFVRGDR 77
Query: 91 VI 92
++
Sbjct: 78 IV 79
>gi|71041581|pdb|1TH7|A Chain A, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041582|pdb|1TH7|B Chain B, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041583|pdb|1TH7|C Chain C, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041584|pdb|1TH7|D Chain D, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041585|pdb|1TH7|E Chain E, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041586|pdb|1TH7|F Chain F, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041587|pdb|1TH7|G Chain G, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041588|pdb|1TH7|H Chain H, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041589|pdb|1TH7|I Chain I, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041590|pdb|1TH7|J Chain J, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041591|pdb|1TH7|K Chain K, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041592|pdb|1TH7|L Chain L, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041593|pdb|1TH7|M Chain M, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041594|pdb|1TH7|N Chain N, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
Length = 81
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 18/85 (21%)
Query: 10 TGGKTEEEEFNTGPLSVLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGK 69
T K E N +++++ +K N ++ G +R++D+H N+VL + E+ ++ G GK
Sbjct: 9 TAHKVLAESLN----NLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSD----GSGK 60
Query: 70 KKALPVNKDRFISKMFLRGDSVIIV 94
K + + +RGD+VI++
Sbjct: 61 K----------LGTIVIRGDNVILI 75
>gi|238499899|ref|XP_002381184.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
flavus NRRL3357]
gi|317150537|ref|XP_003190430.1| U6 snRNA-associated Sm-like protein LSm3 [Aspergillus oryzae
RIB40]
gi|220692937|gb|EED49283.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
flavus NRRL3357]
Length = 96
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 6 DEDTTGGKTEEEEFNTGPLS---VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTEL 62
D + G + E + LS ++ + ++ + +L GR+ A+D HCN+V+ +V E +
Sbjct: 3 DTEDAGTTSVSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVMGDVEETIYVV 62
Query: 63 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+ ++ + + +F+RGDSV+++
Sbjct: 63 EEDENEEEIIRTIKRQE--EMLFVRGDSVVLI 92
>gi|15897658|ref|NP_342263.1| small nuclear riboprotein (snRNP-2) [Sulfolobus solfataricus P2]
gi|13813927|gb|AAK41053.1| Small nuclear riboprotein protein (snRNP-2) [Sulfolobus
solfataricus P2]
Length = 79
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 18/85 (21%)
Query: 10 TGGKTEEEEFNTGPLSVLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGK 69
T K E N +++++ +K N ++ G +R++D+H N+VL + E+ ++ G GK
Sbjct: 7 TAHKVLAESLN----NLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSD----GSGK 58
Query: 70 KKALPVNKDRFISKMFLRGDSVIIV 94
K + + +RGD+VI++
Sbjct: 59 K----------LGTIVIRGDNVILI 73
>gi|367054976|ref|XP_003657866.1| hypothetical protein THITE_2124020 [Thielavia terrestris NRRL 8126]
gi|347005132|gb|AEO71530.1| hypothetical protein THITE_2124020 [Thielavia terrestris NRRL 8126]
Length = 179
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
LM+++++ +LLG +R++D+ N+VL++ +E P T + + L + DR + +
Sbjct: 54 LMVALRDGRKLLGILRSWDQFANLVLQSTKERIFVPPGTAPNQTRGLYADIDRGL--FLV 111
Query: 87 RGDSVIIV 94
RG++V+++
Sbjct: 112 RGENVLLM 119
>gi|320163467|gb|EFW40366.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 304
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 14/56 (25%)
Query: 17 EEFNTGPLSVLMMSVKNN--------------TQLLGRVRAFDRHCNMVLENVREM 58
EE GPLSVL VK + +Q+L V FD+H NMV+ +V+E+
Sbjct: 173 EELQIGPLSVLYRCVKEHYRARLWIRDDKGIRSQMLATVLVFDKHFNMVVTDVQEI 228
>gi|444320755|ref|XP_004181034.1| hypothetical protein TBLA_0E04630 [Tetrapisispora blattae CBS
6284]
gi|387514077|emb|CCH61515.1| hypothetical protein TBLA_0E04630 [Tetrapisispora blattae CBS
6284]
Length = 82
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Query: 36 QLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+L G ++AFD HCN+VL + E EL G+ K+ N + +F+RGDSV ++
Sbjct: 27 ELSGILQAFDSHCNIVLSDAIETKYELV---DGELKSTERNSEM----LFVRGDSVTLI 78
>gi|393228928|gb|EJD36561.1| LSM-domain-containing protein [Auricularia delicata TFB-10046
SS5]
Length = 121
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Query: 16 EEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVRE--MWTELPKTGKGKK 70
+E F+ LS+ + + ++ + +L G + A+D H NM++ +V E M ++P G
Sbjct: 9 QEPFDLIRLSLNERVFVKLRGDRELTGVLHAYDGHMNMIMSDVEETIMIVDVPADGVLLP 68
Query: 71 KA--LPVNKDRFISKMFLRGDSVIIV 94
A + V K R + +F+RGD VI+V
Sbjct: 69 GAGSIKVAKRR-LEMLFVRGDGVILV 93
>gi|367035444|ref|XP_003667004.1| hypothetical protein MYCTH_57908 [Myceliophthora thermophila ATCC
42464]
gi|347014277|gb|AEO61759.1| hypothetical protein MYCTH_57908 [Myceliophthora thermophila ATCC
42464]
Length = 159
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
LM+++++ +LLG +R++D+ N+VL++ +E P T + + L + DR + +
Sbjct: 34 LMVALRDGRKLLGILRSWDQFANLVLQSTKERIFVAPGTVPNQPRGLYADIDRGL--FLV 91
Query: 87 RGDSVIIV 94
RG++V+++
Sbjct: 92 RGENVLLL 99
>gi|156841174|ref|XP_001643962.1| hypothetical protein Kpol_1001p16 [Vanderwaltozyma polyspora DSM
70294]
gi|156114593|gb|EDO16104.1| hypothetical protein Kpol_1001p16 [Vanderwaltozyma polyspora DSM
70294]
Length = 85
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 36 QLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+L+G ++AFD HCN+VL + E EL G+ K+ ++ +F+RGD+V ++
Sbjct: 27 ELVGILQAFDSHCNIVLSDAVETIYELV---DGELKS----NEKTSEMLFVRGDTVTLI 78
>gi|146304997|ref|YP_001192313.1| Sm ribonucleoprotein-like protein [Metallosphaera sedula DSM
5348]
gi|145703247|gb|ABP96389.1| Small nuclear ribonucleoprotein, LSM family [Metallosphaera
sedula DSM 5348]
Length = 75
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 43/70 (61%), Gaps = 14/70 (20%)
Query: 25 SVLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM 84
S++++ +K N ++ G ++++D+H N+VL + E+ ++ G+GKK + +
Sbjct: 15 SLVLVKLKGNKEVRGLLKSYDQHMNLVLSDSEEIQSD----GEGKK----------MGTI 60
Query: 85 FLRGDSVIIV 94
+RGD+VI++
Sbjct: 61 VIRGDNVILI 70
>gi|50302335|ref|XP_451102.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640233|emb|CAH02690.1| KLLA0A02299p [Kluyveromyces lactis]
Length = 93
Score = 38.1 bits (87), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 39/63 (61%), Gaps = 6/63 (9%)
Query: 35 TQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
T++ G++R FD N+V+++ E+ + PK+GK +K F+ ++ L+GD++ +V
Sbjct: 37 TRIRGKIRGFDEFMNVVIDDAFEIAVD-PKSGKESD-----DKAVFLGRIMLKGDNITLV 90
Query: 95 LRN 97
+ N
Sbjct: 91 VAN 93
>gi|254579134|ref|XP_002495553.1| ZYRO0B14102p [Zygosaccharomyces rouxii]
gi|238938443|emb|CAR26620.1| ZYRO0B14102p [Zygosaccharomyces rouxii]
Length = 85
Score = 37.7 bits (86), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Query: 36 QLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+L G ++AFD HCN+VL + E EL G+ K+ ++ +F+RGDSV ++
Sbjct: 27 ELTGTLQAFDSHCNIVLSDAVESIYELV---DGELKS----TEKSSEMVFVRGDSVTLI 78
>gi|209736444|gb|ACI69091.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
Length = 59
Score = 37.7 bits (86), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 19 FNTGPLSVLMMSVKNNTQLLGRVR 42
FNTGPLSVL SVKNNTQ+L R
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLVNCR 47
>gi|255087740|ref|XP_002505793.1| predicted protein [Micromonas sp. RCC299]
gi|226521063|gb|ACO67051.1| predicted protein [Micromonas sp. RCC299]
Length = 204
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 11/68 (16%)
Query: 29 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK----M 84
+++ + Q++GR AFDRH N+VL + E PK G +DR + + +
Sbjct: 19 ITIVDGRQIVGRFMAFDRHMNLVLSDAEEFRKLPPKKGL-------TEEDRAVRRVLGFI 71
Query: 85 FLRGDSVI 92
LRG+ V+
Sbjct: 72 LLRGEEVV 79
>gi|269986972|gb|EEZ93248.1| Like-Sm ribonucleoprotein core [Candidatus Parvarchaeum
acidiphilum ARMAN-4]
Length = 78
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 14/76 (18%)
Query: 19 FNTGPLSVLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD 78
N+ ++++ +KN + G++ AFD H N+ LEN E KK A +
Sbjct: 13 LNSAKGKMVLVELKNGHAITGKLVAFDVHINVTLENAEE-----------KKDA---DTL 58
Query: 79 RFISKMFLRGDSVIIV 94
R + +F+RGD++I++
Sbjct: 59 RKLGNVFIRGDTIILI 74
>gi|388580102|gb|EIM20419.1| like-Sm ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 89
Score = 37.7 bits (86), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 15/71 (21%)
Query: 31 VKNNTQLLGRVRAFDRHCNMVLENVREMW-------TELPKTGKGKKKALPVNKDRFISK 83
++ + +L+G + A+D H N++L NV E T L T + K+++P+
Sbjct: 24 LRGDRELIGVLHAYDSHMNLILGNVDEFVTVVDVDSTTLESTTRFVKRSMPM-------- 75
Query: 84 MFLRGDSVIIV 94
+++RGD VI++
Sbjct: 76 LYIRGDGVILI 86
>gi|321465034|gb|EFX76038.1| hypothetical protein DAPPUDRAFT_226183 [Daphnia pulex]
Length = 103
Score = 37.7 bits (86), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 26/104 (25%)
Query: 6 DEDTTGGK--TEEEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENV----- 55
DE+ T T EE + LS+ + + ++N +L GR+ A+D+H NMVL V
Sbjct: 3 DENETSAPVITVEEPLDLIRLSLDERIYVKMRNERELRGRLHAYDQHLNMVLGEVEETVT 62
Query: 56 -----REMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
E + E+ +T K R I +F+RGD VI+V
Sbjct: 63 TVEIDEETYEEVYRTTK-----------RNIPMLFVRGDGVILV 95
>gi|168061084|ref|XP_001782521.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168061116|ref|XP_001782537.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066445|ref|XP_001785148.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663270|gb|EDQ50044.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666006|gb|EDQ52673.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666022|gb|EDQ52689.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 145
Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 29 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGK 67
+++++ QL+G+ AFDRH N+VL + E+ PK GK
Sbjct: 19 VTIQDGRQLVGKFMAFDRHMNLVLGDCEELRRVPPKKGK 57
>gi|218884605|ref|YP_002428987.1| Small nuclear ribonucleoprotein (snRNP)-like protein
[Desulfurococcus kamchatkensis 1221n]
gi|218766221|gb|ACL11620.1| Small nuclear ribonucleoprotein (snRNP) - like protein
[Desulfurococcus kamchatkensis 1221n]
Length = 75
Score = 37.7 bits (86), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 37/68 (54%), Gaps = 14/68 (20%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+++ K+N L G++R+FD+H N+VL++ E+ + R + + +
Sbjct: 17 VLIKTKDNIPLRGKLRSFDQHLNIVLDDAEEILSN--------------GSTRKLGTIVI 62
Query: 87 RGDSVIIV 94
RGD+V+++
Sbjct: 63 RGDTVVLI 70
>gi|255714250|ref|XP_002553407.1| KLTH0D16082p [Lachancea thermotolerans]
gi|238934787|emb|CAR22969.1| KLTH0D16082p [Lachancea thermotolerans CBS 6340]
Length = 81
Score = 37.7 bits (86), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
Query: 36 QLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
++ G ++AFD HCN+VL N E EL G+ K+ + +F+RGDSV ++
Sbjct: 25 EMTGVLQAFDSHCNIVLSNATETIYELV---DGELKS----STKGSEMVFVRGDSVTLI 76
>gi|389746884|gb|EIM88063.1| like-Sm ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 97
Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 16 EEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVRE--MWTELPKTGKGKK 70
+E F+ LS+ + + ++ + +L G + A+D H N++L +V E M + P+ +
Sbjct: 9 QEPFDLIRLSLSERVFVKLRGDRELTGILHAYDGHMNLILSDVEETIMIVDAPEGVPPSQ 68
Query: 71 KALPVNKDRFISKMFLRGDSVIIV 94
+ + K R + +F+RGD VI+V
Sbjct: 69 SVVNMAK-RKVPMLFVRGDGVILV 91
>gi|116204657|ref|XP_001228139.1| hypothetical protein CHGG_10212 [Chaetomium globosum CBS 148.51]
gi|88176340|gb|EAQ83808.1| hypothetical protein CHGG_10212 [Chaetomium globosum CBS 148.51]
Length = 182
Score = 37.7 bits (86), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
LM+++++ +L+G +R++D+ N+VL++ +E P T + + L + DR + +
Sbjct: 57 LMLALRDGRKLVGILRSWDQFANLVLQSTKERIFVPPGTAPDQVRGLYADVDRGL--FLV 114
Query: 87 RGDSVIIV 94
RG++V+++
Sbjct: 115 RGENVLLL 122
>gi|326435095|gb|EGD80665.1| LSM domain-containing protein [Salpingoeca sp. ATCC 50818]
Length = 91
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 32 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 91
+ N L G++ A+D+H NMVL +V E T + + + + +R + +++RGD V
Sbjct: 25 RGNRVLSGQLHAYDQHLNMVLSDVVETITT-SEIDEESYEEIIKTTERKMPMLYVRGDGV 83
Query: 92 IIV 94
I+V
Sbjct: 84 ILV 86
>gi|390939095|ref|YP_006402833.1| Sm ribonucleoprotein-like protein [Desulfurococcus fermentans DSM
16532]
gi|390192202|gb|AFL67258.1| Like-Sm ribonucleoprotein core [Desulfurococcus fermentans DSM
16532]
Length = 75
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 37/68 (54%), Gaps = 14/68 (20%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+++ K+N L G++R+FD+H N+VL++ E+ + R + + +
Sbjct: 17 VLIKTKDNIPLRGKLRSFDQHLNIVLDDAEEILSN--------------GSTRKLGTVVI 62
Query: 87 RGDSVIIV 94
RGD+V+++
Sbjct: 63 RGDTVVLI 70
>gi|303289090|ref|XP_003063833.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454901|gb|EEH52206.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 204
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 29 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 88
+++ + Q++GR AFDRH N+VL + E PK G +++ R + + LRG
Sbjct: 19 VTIVDGRQIVGRFMAFDRHMNIVLGDAEEFRKLPPKKGLTEEER---QVRRVLGFLLLRG 75
Query: 89 DSVI 92
+ V+
Sbjct: 76 EEVV 79
>gi|353242927|emb|CCA74526.1| related to small nuclear ribonucleoprotein associated protein b
[Piriformospora indica DSM 11827]
Length = 163
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 29 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFISKMFLR 87
+++ +N QL+G++ AFDRH N+VL + E K +A+P + R + + LR
Sbjct: 11 VTLNDNRQLVGQMLAFDRHMNLVLADCEEFRRVKQKKKSADDEAVPSQELKRSLGLVILR 70
Query: 88 GDSVI 92
G+ ++
Sbjct: 71 GEMIV 75
>gi|170111208|ref|XP_001886808.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164638166|gb|EDR02445.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 95
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 5 MDEDTTGGKTEEEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE 61
MD T+G +E F+ LS+ + + ++ + +L G + A+D H N+++ +V E
Sbjct: 1 MDLSTSG---IQEPFDLIRLSLSERVFVKLRGDRELTGILHAYDGHMNLIMSDVEETILI 57
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+ + L V K R + +F+RGD VI+V
Sbjct: 58 VDTDSVPNGQGLQVAK-RKMEMLFVRGDGVILV 89
>gi|119478785|ref|XP_001259441.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Neosartorya
fischeri NRRL 181]
gi|119407595|gb|EAW17544.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Neosartorya
fischeri NRRL 181]
Length = 94
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 6 DEDTTGGKTEEEEFNTGPLS---VLMMSVKNNTQLLGRVRAFDRHCNMVLENVRE 57
D + TG + E + LS ++ + ++ + +L GR+ A+D HCN+VL +V E
Sbjct: 3 DTEDTGAGSVSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEE 57
>gi|393243225|gb|EJD50740.1| Sm-like ribonucleo protein [Auricularia delicata TFB-10046 SS5]
Length = 183
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD---RFISK 83
L +++ + L+G + AFDRH N+VL + E PK G+ P + R +
Sbjct: 19 LKVTLNDGRALVGHMLAFDRHMNLVLADCEEFRRVRPKKKAGESSEGPAPEQEIKRTLGL 78
Query: 84 MFLRGDSVI 92
+ LRG++V+
Sbjct: 79 VILRGETVV 87
>gi|209879574|ref|XP_002141227.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209556833|gb|EEA06878.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 106
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 32 KNNTQLLGRVRAFDRHCNMVLENVREMWTELP-KTGKGKKKALPVNKDRFISKMFLRGDS 90
+ + +L G + A+D H NMVL NV+E ++ G++ + V R I +FLRGD
Sbjct: 34 RGDRELEGILYAYDPHMNMVLGNVKETSQKITIDEVTGEESTMKVT--RRIEMLFLRGDL 91
Query: 91 VIIV 94
VI+V
Sbjct: 92 VILV 95
>gi|307105649|gb|EFN53897.1| hypothetical protein CHLNCDRAFT_136065 [Chlorella variabilis]
Length = 239
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 13/69 (18%)
Query: 43 AFDRHCNMVLENVREMWTELPKTGKGKKKA-------------LPVNKDRFISKMFLRGD 89
AFD+H N+VL +V E +T L + + K A ++ R + ++F+RGD
Sbjct: 143 AFDKHMNLVLRDVEEQYTVLLQVQRVKPPAPGSSGLERTRWVRQQEHRRRQLRQVFVRGD 202
Query: 90 SVIIVLRNP 98
SV++V P
Sbjct: 203 SVVLVSAGP 211
>gi|150866473|ref|XP_001386093.2| hypothetical protein PICST_63621 [Scheffersomyces stipitis CBS
6054]
gi|149387729|gb|ABN68064.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 88
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 9/68 (13%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+++ ++ ++ GR++ +D HCNMVL E G ++ + V K + F+
Sbjct: 25 VLVKLRGAREMKGRLQGYDSHCNMVLSEAEEYI-----YSAGDEETV-VKKTEMV---FV 75
Query: 87 RGDSVIIV 94
RGDSVI++
Sbjct: 76 RGDSVILI 83
>gi|359417782|ref|ZP_09209851.1| like-Sm ribonucleoprotein core [Candidatus Haloredivivus sp. G17]
gi|358031875|gb|EHK00710.1| like-Sm ribonucleoprotein core [Candidatus Haloredivivus sp. G17]
Length = 78
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 15/62 (24%)
Query: 33 NNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVI 92
N+ + G ++AFD+H N+ LEN R + TE +T G K+FLRGD+V+
Sbjct: 29 NDVTVSGELQAFDKHLNIWLENAR-VNTEDGQTDYG--------------KLFLRGDNVL 73
Query: 93 IV 94
V
Sbjct: 74 FV 75
>gi|149621318|ref|XP_001518812.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Ornithorhynchus anatinus]
Length = 155
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 29 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 88
+S+K+ + +G AFDRH N+VL + E L KG K+ P+ R + + LRG
Sbjct: 18 VSIKDGRKFVGTFIAFDRHMNLVLADCEEFRLTL---NKGLKE--PIEVKRTLGFILLRG 72
Query: 89 DSVI 92
++++
Sbjct: 73 ENIV 76
>gi|260947516|ref|XP_002618055.1| hypothetical protein CLUG_01514 [Clavispora lusitaniae ATCC 42720]
gi|238847927|gb|EEQ37391.1| hypothetical protein CLUG_01514 [Clavispora lusitaniae ATCC 42720]
Length = 130
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 25/94 (26%)
Query: 10 TGGKTEEEEFNTGPLSVL--------MMSVKNNTQLLGRVRAFDRHCNMVLENVRE-MWT 60
TG + EE PL ++ ++ ++ ++ G+++ +D HCNMVL + +E ++
Sbjct: 48 TGAQQEE------PLDLIRYQLDESVLVKLRGAREMKGKLQGYDSHCNMVLSDAQETIYG 101
Query: 61 ELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
E + KK + +F+RGDSVI++
Sbjct: 102 ENEEDTVVKKTEM----------VFVRGDSVILI 125
>gi|161527857|ref|YP_001581683.1| like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
gi|160339158|gb|ABX12245.1| Like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
Length = 80
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 15/69 (21%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 85
V+++ ++NN + G ++ FD H N+ LEN ++ E P I K+
Sbjct: 19 VVLLRLRNNKTVQGTLKDFDIHMNLTLENAEDVSEEKPNP---------------IGKVL 63
Query: 86 LRGDSVIIV 94
LRGD+++ +
Sbjct: 64 LRGDNILAI 72
>gi|145527883|ref|XP_001449741.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124417330|emb|CAK82344.1| unnamed protein product [Paramecium tetraurelia]
Length = 85
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 19/80 (23%)
Query: 23 PLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALP 74
PL VL S+ +NN +L G + ++D H NM++ E T + K K+K
Sbjct: 7 PLDVLKFSIAQQIYIKMRNNIELKGTLVSYDNHLNMIISKAEE--TSFQEGIKTKRK--- 61
Query: 75 VNKDRFISKMFLRGDSVIIV 94
+ ++LRGD +I++
Sbjct: 62 ------LDALYLRGDGIILI 75
>gi|330805691|ref|XP_003290812.1| hypothetical protein DICPUDRAFT_81530 [Dictyostelium purpureum]
gi|325079022|gb|EGC32643.1| hypothetical protein DICPUDRAFT_81530 [Dictyostelium purpureum]
Length = 250
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 14/65 (21%)
Query: 39 GRVRAFDRHCNMVLENVREMWTEL--------PKTGKGKKKALPVNKDRFISKMFLRGDS 90
G + AFD+H N++L +V E +TE KT + +K ++ ++F++GD+
Sbjct: 189 GYLVAFDKHWNIILRDVEEEYTEYHFLSAEEQEKTNRHQKIK------KYYGQLFIKGDT 242
Query: 91 VIIVL 95
++ V+
Sbjct: 243 IVSVI 247
>gi|430813883|emb|CCJ28802.1| unnamed protein product [Pneumocystis jirovecii]
Length = 97
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVRE--MWTELPKTGKGKKKALPVNKDRFISKM 84
+ + ++ + ++ GR+ A+D H NMVL +V E ++ +T + K + +
Sbjct: 28 VYVKLRGDREIKGRLHAYDSHLNMVLSDVEETVYIVDIDETEEHIS-----TKKKHSEMI 82
Query: 85 FLRGDSVIIV 94
F+RGDSVI++
Sbjct: 83 FVRGDSVILI 92
>gi|70997292|ref|XP_753396.1| U6 small nuclear ribonucleoprotein (Lsm3) [Aspergillus fumigatus
Af293]
gi|66851032|gb|EAL91358.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
fumigatus Af293]
gi|159126877|gb|EDP51993.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
fumigatus A1163]
Length = 83
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 6 DEDTTGGKTEEEEFNTGPLS---VLMMSVKNNTQLLGRVRAFDRHCNMVLENVRE 57
D + TG + E + LS ++ + ++ + +L GR+ A+D HCN+VL +V E
Sbjct: 3 DTEDTGAGSVSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEE 57
>gi|402226567|gb|EJU06627.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 92
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Query: 16 EEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVRE--MWTELPKTGKGKK 70
+E F+ LS+ + + +K L G + A+D H NM++ +V E + E ++G +
Sbjct: 9 QEPFDLVRLSLSERVFVKLKGERSLTGVLHAYDGHMNMIMSDVEETILMVEPEESGSTVQ 68
Query: 71 KALPVNKDRFISKMFLRGDSVIIV 94
R + +F+RGDSVI+V
Sbjct: 69 -----TMKRAMEMLFVRGDSVILV 87
>gi|170091648|ref|XP_001877046.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648539|gb|EDR12782.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 96
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 11/86 (12%)
Query: 16 EEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMW----TELPKTGKG 68
+E F+ LS+ + + ++ + +L G + A+D H N+++ +V E T+ TG+G
Sbjct: 9 QEPFDLIRLSLSERVFVKLRGDRELTGILHAYDGHMNLIMSDVEETILIVDTDSVPTGQG 68
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIV 94
L V K R + +F+RGD VI+V
Sbjct: 69 ---VLQVAK-RKMEMLFVRGDGVILV 90
>gi|326472596|gb|EGD96605.1| GTP-binding protein [Trichophyton tonsurans CBS 112818]
Length = 779
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 85
V+ + ++ + +L GR+ A+D HCN+VL +V E + + G++ + K +F
Sbjct: 27 VVFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYIVEENEAGEETIKTIKKQE--EMLF 84
Query: 86 LRGDS 90
+RG S
Sbjct: 85 VRGTS 89
>gi|219129945|ref|XP_002185137.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403316|gb|EEC43269.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 89
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 9/80 (11%)
Query: 23 PLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALP 74
PL ++ +S+ + + +L G++ +D+H NM+L +V E T + + + +
Sbjct: 4 PLDLIRLSIDERVYVKCRGDRELRGKLHGYDQHLNMILGDVEETVTS-TEIDEETDEQIV 62
Query: 75 VNKDRFISKMFLRGDSVIIV 94
+ R + +F+RGD V++V
Sbjct: 63 KKQTRKVGMLFVRGDIVVLV 82
>gi|409050337|gb|EKM59814.1| hypothetical protein PHACADRAFT_170423 [Phanerochaete carnosa
HHB-10118-sp]
Length = 95
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 49/86 (56%), Gaps = 10/86 (11%)
Query: 16 EEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVRE---MWTELPKTGKGK 69
+E F+ LS+ + + ++ + +L G + A+D H N++L +V E + ++ G+G+
Sbjct: 8 QEPFDLIRLSLSERVFVKLRGDRELSGILHAYDGHMNLILSDVEETILIVDQIDGAGEGQ 67
Query: 70 KKALPVN-KDRFISKMFLRGDSVIIV 94
+ VN R + +F+RGD VI+V
Sbjct: 68 QT---VNMAKRKMEMLFVRGDGVILV 90
>gi|378726255|gb|EHY52714.1| hypothetical protein HMPREF1120_00923 [Exophiala dermatitidis
NIH/UT8656]
Length = 104
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 85
++ + ++ + +L GR+ A+D HCN+VL V E + + +G++ K +F
Sbjct: 26 IVFVRLRGDRELKGRLHAYDSHCNLVLGEVEETIYTIEEDDEGEETVKTTKKQS--DMLF 83
Query: 86 LRG 88
+RG
Sbjct: 84 VRG 86
>gi|328858783|gb|EGG07894.1| hypothetical protein MELLADRAFT_35186 [Melampsora larici-populina
98AG31]
Length = 95
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWT--ELPKTGKGKKKALPVNKDRFISKM 84
+++ ++ + ++ G + A+D H NMVL +V E T E+P++ + V ++ +
Sbjct: 12 VLIKLRGDREVTGTLHAYDGHMNMVLSDVTESITIVEVPESPNQEPTIRIVKRN--CEML 69
Query: 85 FLRGDSVIIVL 95
F+RGD V++V+
Sbjct: 70 FVRGDGVVLVI 80
>gi|45190730|ref|NP_984984.1| AER125Cp [Ashbya gossypii ATCC 10895]
gi|44983709|gb|AAS52808.1| AER125Cp [Ashbya gossypii ATCC 10895]
gi|374108207|gb|AEY97114.1| FAER125Cp [Ashbya gossypii FDAG1]
Length = 83
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Query: 36 QLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+L G ++AFD HCN+VL + E +L G+ K+ + + +F+RGDSV +V
Sbjct: 26 KLSGTLQAFDSHCNIVLSDAEETIYQLI---DGELKS----ETKSSEMVFVRGDSVTLV 77
>gi|302849879|ref|XP_002956468.1| hypothetical protein VOLCADRAFT_107252 [Volvox carteri f.
nagariensis]
gi|300258166|gb|EFJ42405.1| hypothetical protein VOLCADRAFT_107252 [Volvox carteri f.
nagariensis]
Length = 297
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 29 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 88
+++ ++ Q++GR AFDRH N+VL + E PK GK +++ + R + + LRG
Sbjct: 19 VTLVDSRQIVGRFMAFDRHMNLVLGDSEEFRRLPPKKGKSEEER---EERRVLGLVLLRG 75
Query: 89 DSVI 92
+ +I
Sbjct: 76 EEII 79
>gi|392589852|gb|EIW79182.1| Sm-like ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 178
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFISKMF 85
L +++ + +G++ AFDRH N+V+ E PK G+ + P + R + +
Sbjct: 19 LKVTINDGRAFIGQMLAFDRHMNLVIAECEEFRRVRPKKKAGETETPPEQEMKRTLGLVI 78
Query: 86 LRGDSVIIV 94
LRG++V+ +
Sbjct: 79 LRGETVVSI 87
>gi|294885997|ref|XP_002771506.1| U6 small nuclear ribonucleoprotein E, putative [Perkinsus marinus
ATCC 50983]
gi|239875210|gb|EER03322.1| U6 small nuclear ribonucleoprotein E, putative [Perkinsus marinus
ATCC 50983]
Length = 97
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 10/64 (15%)
Query: 32 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 91
+ + +L+G +R FD + NMVL++V E +T LP GK K I + L G SV
Sbjct: 37 RGDRELVGTLRGFDDYVNMVLDDVTE-YTILPDGGKRVDK---------IESILLNGSSV 86
Query: 92 IIVL 95
+++
Sbjct: 87 AMLV 90
>gi|449549919|gb|EMD40884.1| hypothetical protein CERSUDRAFT_131254 [Ceriporiopsis
subvermispora B]
Length = 97
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 16 EEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVRE--MWTELPKTGKGKK 70
+E F+ LS+ + + ++ + +L G + A+D H N++L +V E M + + +
Sbjct: 9 QEPFDLIRLSLSERVFVKLRGDRELTGVLHAYDGHMNLILSDVEETIMIVDQVEGSANGQ 68
Query: 71 KALPVNKDRFISKMFLRGDSVIIV 94
+ + K R I +F+RGD VI+V
Sbjct: 69 NTVNIAK-RKIDMLFVRGDGVILV 91
>gi|366998846|ref|XP_003684159.1| hypothetical protein TPHA_0B00530 [Tetrapisispora phaffii CBS
4417]
gi|357522455|emb|CCE61725.1| hypothetical protein TPHA_0B00530 [Tetrapisispora phaffii CBS
4417]
Length = 85
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 36 QLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+L+G ++AFD HCN VL + E +L G+ K+ +++ +F+RGD+V ++
Sbjct: 27 ELVGTLQAFDSHCNFVLSDAVETIYQLI---DGELKS----REKSSEMIFVRGDTVALI 78
>gi|388579060|gb|EIM19389.1| Sm-like ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 179
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
L +++ + QL+G++ AFDRH N+VL + E + L G + +P R + + L
Sbjct: 19 LRVTLNDTRQLVGQMLAFDRHMNLVLVDTIE-FRRL--KGPSSQGDIPKEMKRALGLIVL 75
Query: 87 RGDSVIIV 94
RG+++I +
Sbjct: 76 RGETIISI 83
>gi|358054953|dbj|GAA99020.1| hypothetical protein E5Q_05709 [Mixia osmundae IAM 14324]
Length = 133
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 16 EEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 72
+E F+ LS+ + + ++ + ++ G + A+D+H NM+L V E T + A
Sbjct: 11 QEPFDLIRLSLSERVFIKLRGDREIRGVLHAYDQHMNMILGEVEETQT---IVDLDESAA 67
Query: 73 LPVNK----DRFISKMFLRGDSVIIV 94
PV R I +F+RGDSV+++
Sbjct: 68 QPVGTLRQVKRQIDCLFVRGDSVVLL 93
>gi|154275866|ref|XP_001538778.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150413851|gb|EDN09216.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 104
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 15/84 (17%)
Query: 12 GKTEEEEFNTGPLSVLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 71
G EEE + +S + S+ +N++ G + FD + NMVLE+V TE TG K
Sbjct: 25 GDKGEEELGS-DISPFLSSLTSNSEFSGTLLGFDDYVNMVLEDV----TEFDYTGSQTK- 78
Query: 72 ALPVNKDRFISKMFLRGDSVIIVL 95
+SK+ L G+++ +++
Sbjct: 79 ---------LSKILLNGNNICMLI 93
>gi|124487908|gb|ABN12037.1| small nuclear ribonucleoprotein B'-like protein [Maconellicoccus
hirsutus]
Length = 135
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 31 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 90
+++ +G +AFD+H N++L E + + K A P + R + + LRGDS
Sbjct: 21 LQDGRTFIGTFKAFDKHMNLILSECDEY-----RKYRTKGDAPPREEKRTLGFVLLRGDS 75
Query: 91 VIIV 94
V+ V
Sbjct: 76 VVTV 79
>gi|341038886|gb|EGS23878.1| hypothetical protein CTHT_0005870 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 209
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
LM+++++ +L+G +R++D+ N+VL++ +E P T + + L + DR + +
Sbjct: 84 LMVALRDGRKLIGILRSWDQFANLVLQSTKERIFIPPNTMPNQPRGLYADIDRGL--FLV 141
Query: 87 RGDSVIIV 94
RG++V+++
Sbjct: 142 RGENVLLL 149
>gi|384491006|gb|EIE82202.1| hypothetical protein RO3G_06907 [Rhizopus delemar RA 99-880]
Length = 102
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++ + +L G + A+D H NMVL V E T + + ++ + K F +F+
Sbjct: 30 VYVKLRGDRELTGILHAYDGHLNMVLGEVEETITMVDVNEETLEEVIRTVKRTF-EMLFV 88
Query: 87 RGDSVIIV 94
RGD VI+V
Sbjct: 89 RGDGVILV 96
>gi|159111944|ref|XP_001706202.1| Small nuclear ribonucleoprotein Sm D2, putative [Giardia lamblia
ATCC 50803]
gi|157434296|gb|EDO78528.1| Small nuclear ribonucleoprotein Sm D2, putative [Giardia lamblia
ATCC 50803]
Length = 124
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+++ +++ + G ++A+DRH N+V E W E + ++R L
Sbjct: 64 VLVQLRSGRFITGVLKAYDRHLNLVFSEATETWEE---------NGIEYTEER--KNFML 112
Query: 87 RGDSVIIVLRN 97
RGD+VI+V+ N
Sbjct: 113 RGDNVIMVVSN 123
>gi|302652112|ref|XP_003017916.1| hypothetical protein TRV_08082 [Trichophyton verrucosum HKI 0517]
gi|291181501|gb|EFE37271.1| hypothetical protein TRV_08082 [Trichophyton verrucosum HKI 0517]
Length = 193
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVRE 57
V+ + ++ + +L GR+ A+D HCN+VL +V E
Sbjct: 27 VVFVKLRGDRELKGRLHAYDSHCNIVLGDVEE 58
>gi|50425663|ref|XP_461428.1| DEHA2F25036p [Debaryomyces hansenii CBS767]
gi|49657097|emb|CAG89843.1| DEHA2F25036p [Debaryomyces hansenii CBS767]
Length = 93
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 21/81 (25%)
Query: 23 PLSVLMMSVKNNTQLL--------GRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALP 74
PL ++ S+ + Q+L G + FD + NMVLENV E E P
Sbjct: 23 PLEIIDKSIGHKIQVLMTNDKEFKGTLIGFDDYVNMVLENVEEFDNEGP----------- 71
Query: 75 VNKDRFISKMFLRGDSVIIVL 95
K + I KM L G V +++
Sbjct: 72 --KGKVIKKMLLNGSQVAMLI 90
>gi|388851843|emb|CCF54437.1| probable LSM3-U6 snRNA-associated Sm-like protein [Ustilago hordei]
Length = 109
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 17 EEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKAL 73
E F+ LS+ + + ++ + +L G + A+D H N++L +V E + + K+ +
Sbjct: 24 EPFDLIRLSISERVYVKLRGDRELRGTLHAYDGHMNLILGDVEETIYVVDINEETGKETV 83
Query: 74 PVNKDRFISKMFLRGDSVIIV 94
V K R +F+RGDSVI+V
Sbjct: 84 RVVK-RQSEMLFVRGDSVILV 103
>gi|320101466|ref|YP_004177058.1| LSM family small nuclear ribonucleoprotein [Desulfurococcus
mucosus DSM 2162]
gi|319753818|gb|ADV65576.1| Small nuclear ribonucleoprotein, LSM family [Desulfurococcus
mucosus DSM 2162]
Length = 75
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 14/69 (20%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 85
++++ K++ L G++R+FD+H N+VL++ E+ G G + L +
Sbjct: 16 LVLIKTKDSVSLRGKLRSFDQHLNIVLDDTEEIR------GDGSVRKL--------GTVV 61
Query: 86 LRGDSVIIV 94
+RGD+V+++
Sbjct: 62 IRGDTVVLI 70
>gi|357126031|ref|XP_003564692.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like isoform 2
[Brachypodium distachyon]
Length = 114
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 37 LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+L + A+D+H NM+L +V E+ T + + ++ + + R I +F+RGD VI+V
Sbjct: 51 ILNLLMAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTR-RTIPFLFVRGDGVILV 107
>gi|302497389|ref|XP_003010695.1| hypothetical protein ARB_03397 [Arthroderma benhamiae CBS 112371]
gi|291174238|gb|EFE30055.1| hypothetical protein ARB_03397 [Arthroderma benhamiae CBS 112371]
Length = 193
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVRE 57
V+ + ++ + +L GR+ A+D HCN+VL +V E
Sbjct: 27 VVFVKLRGDRELKGRLHAYDSHCNIVLGDVEE 58
>gi|126138356|ref|XP_001385701.1| hypothetical protein PICST_23784 [Scheffersomyces stipitis CBS
6054]
gi|126092979|gb|ABN67672.1| predicted protein, partial [Scheffersomyces stipitis CBS 6054]
Length = 73
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 13/63 (20%)
Query: 33 NNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVI 92
N+ + G++ FD NMVLE+VRE+ ++ V D+ I KM L G V
Sbjct: 22 NDKEFTGKLVGFDDFVNMVLEDVREIDSD-------------VKSDKVIKKMLLNGGQVA 68
Query: 93 IVL 95
+++
Sbjct: 69 MII 71
>gi|359493113|ref|XP_003634512.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like isoform
2 [Vitis vinifera]
gi|296081172|emb|CBI18198.3| unnamed protein product [Vitis vinifera]
Length = 109
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 14 TEEEEFNTGPLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKT 65
+EEE PL ++ +S+ +++ +L G++ A+D+H NM+L +V E+ T +
Sbjct: 3 SEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEID 62
Query: 66 GKGKKKALPVNKDRFISKMFLRGDS 90
+ ++ + V K R I K + DS
Sbjct: 63 DETYEEIVRVKK-RSIEKWHQKSDS 86
>gi|255513759|gb|EET90024.1| Sm-family ribonucleoprotein [Candidatus Micrarchaeum acidiphilum
ARMAN-2]
Length = 75
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 13/68 (19%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+++ +KNN + G+V +FD H N+VL+N EL G+ K K + + L
Sbjct: 18 VLIRLKNNLNIRGKVTSFDAHMNIVLDNAE----ELDANGELKAK---------LGTILL 64
Query: 87 RGDSVIIV 94
RG ++I V
Sbjct: 65 RGGNIIFV 72
>gi|170291130|ref|YP_001737946.1| like-Sm ribonucleoprotein core [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175210|gb|ACB08263.1| Like-Sm ribonucleoprotein core [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 78
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 12/64 (18%)
Query: 31 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 90
+KN +Q++G++ +D N+VL++ RE+ P +G+ K R + +F+RG++
Sbjct: 24 LKNGSQIVGKLIVYDEMMNLVLDSAREVD---PASGEVK---------RSVGTLFIRGNN 71
Query: 91 VIIV 94
V+ V
Sbjct: 72 VLFV 75
>gi|424811999|ref|ZP_18237239.1| small nuclear ribonucleoprotein [Candidatus Nanosalinarum sp.
J07AB56]
gi|339756221|gb|EGQ39804.1| small nuclear ribonucleoprotein [Candidatus Nanosalinarum sp.
J07AB56]
Length = 75
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 23/83 (27%)
Query: 20 NTGPLSVL--------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 71
N PL VL M+ +K+ T + G +RAFD H NM L++ KTG+ ++
Sbjct: 5 NARPLDVLGDARGTNVMIELKDETVVSGTLRAFDSHLNMWLDDA-------SKTGEDGRE 57
Query: 72 ALPVNKDRFISKMFLRGDSVIIV 94
K+ +RGD+V+ V
Sbjct: 58 DF--------GKILIRGDNVVHV 72
>gi|119719338|ref|YP_919833.1| like-Sm ribonucleoprotein, core [Thermofilum pendens Hrk 5]
gi|119524458|gb|ABL77830.1| Like-Sm ribonucleoprotein, core [Thermofilum pendens Hrk 5]
Length = 73
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 23/85 (27%)
Query: 22 GPLSVLMMSVKNNT--------QLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKAL 73
G +SVL S++ N ++ G+++++D H N+VLEN E+ +G
Sbjct: 4 GTISVLAESLEKNVLVKLKGGREIRGQLKSYDYHLNLVLENAEEI--------RG----- 50
Query: 74 PVNKDRFISKMFLRGDSVIIVLRNP 98
+ R + + +RGD+VI+V P
Sbjct: 51 --TRTRQLGTIIVRGDNVILVSPAP 73
>gi|344303705|gb|EGW33954.1| hypothetical protein SPAPADRAFT_59353 [Spathaspora passalidarum
NRRL Y-27907]
Length = 80
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 11/69 (15%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMF 85
+++ ++ ++ G+++ +D HCNMVL E ++ + + KK + +F
Sbjct: 19 VLIKLRGAREIKGKLQGYDSHCNMVLSEAEEYIYNDSNDDVETKKTEM----------VF 68
Query: 86 LRGDSVIIV 94
+RGDSVI++
Sbjct: 69 VRGDSVILI 77
>gi|328773803|gb|EGF83840.1| hypothetical protein BATDEDRAFT_8283, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 213
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
L +++++ +G++ AFD+H N+VL E PKT +++ + R + + L
Sbjct: 16 LKITIQDGRTFIGQMLAFDKHMNLVLSECEEFRKIRPKTKSQQER----EEKRSLGLVIL 71
Query: 87 RGDSVI 92
RG+++I
Sbjct: 72 RGETII 77
>gi|121713870|ref|XP_001274546.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
clavatus NRRL 1]
gi|119402699|gb|EAW13120.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
clavatus NRRL 1]
Length = 74
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 6 DEDTTGGKTEEEEFNTGPLS---VLMMSVKNNTQLLGRVRAFDRHCNMVLENVRE 57
D + G + E + LS ++ + ++ + +L GR+ A+D HCN+VL +V E
Sbjct: 3 DTEDAGASSVSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEE 57
>gi|392593019|gb|EIW82345.1| like-Sm ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 97
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 5 MDEDTTGGKTEEEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE 61
MD + +G +E F+ LS+ + + ++ + +++G + A+D H N++L +V E
Sbjct: 1 MDSNASG---IQEPFDLIRLSLSERVFVKLRGDREVVGILHAYDGHMNLILSDVEETIMI 57
Query: 62 L-PKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+ P G + R ++ +F+RGD VI+V
Sbjct: 58 VDPIEGSPNSEGTVKVAKRKMNMLFVRGDGVILV 91
>gi|328769008|gb|EGF79053.1| hypothetical protein BATDEDRAFT_90185 [Batrachochytrium
dendrobatidis JAM81]
Length = 105
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 14 TEEEEFNTGPLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKT 65
EE T PL ++ +S+ + + +L G++ A+D+H NMVL V E T +
Sbjct: 12 AEETVQTTEPLDLVRLSLDERIYVKMRGDRELRGKLHAYDQHMNMVLGEVEESITVVHLD 71
Query: 66 GKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+++ + + +F+RGD VI+V
Sbjct: 72 ENEDEESSEIVTKNY-EMLFVRGDGVILV 99
>gi|452824595|gb|EME31597.1| small nuclear ribonucleoprotein B and B' [Galdieria sulphuraria]
Length = 214
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 9/68 (13%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
L +S+ + ++G++ AFD+H N+VL + E + +L K K +K+AL + L
Sbjct: 17 LRVSLDDQRVIVGQLLAFDKHLNLVLNDCEE-FRKLKKQDKEEKRAL--------GLVLL 67
Query: 87 RGDSVIIV 94
RG+SVI +
Sbjct: 68 RGESVITM 75
>gi|145356505|ref|XP_001422469.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582712|gb|ABP00786.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 97
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ + ++ + + GR+ A+D+H NM+L +V E+ T + ++ K R + +F+
Sbjct: 25 VYVKLRGDREARGRLHAYDQHLNMILGDVEEVITSTETDEETFEEFTKTTK-RSVPFLFI 83
Query: 87 RGDSVIIV 94
RGD+V +V
Sbjct: 84 RGDAVTLV 91
>gi|395330396|gb|EJF62779.1| like-Sm ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 97
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 16 EEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 72
+E F+ LS+ + + ++ + +L G + A+D H N++L +V E + +
Sbjct: 9 QEPFDLIRLSLSERVFVKLRGDRELTGVLHAYDGHMNLILSDVEETIMIVDHVEGAPEGH 68
Query: 73 LPVN-KDRFISKMFLRGDSVIIV 94
VN R + +F+RGD VI+V
Sbjct: 69 ATVNIAKRKMEMLFVRGDGVILV 91
>gi|449690492|ref|XP_002158063.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like, partial
[Hydra magnipapillata]
Length = 72
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 6 DEDTTGGKTEEEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWT 60
DED T T EE + S+ + + ++N+ +L G++ A+D+H NMVL +V E+ T
Sbjct: 3 DEDAT--HTVEEPLDLMKFSLDEKVYVKMRNDRELRGKLHAYDQHLNMVLGDVEEIIT 58
>gi|407461851|ref|YP_006773168.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus
koreensis AR1]
gi|407045473|gb|AFS80226.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus
koreensis AR1]
Length = 75
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 15/69 (21%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 85
V+++ ++NN + G ++ FD H N+ LEN ++ E P + K+
Sbjct: 16 VVLLRLRNNKTIQGVLQDFDIHMNLTLENAEDVSEEKPDP---------------LGKVL 60
Query: 86 LRGDSVIIV 94
LRGD+++ +
Sbjct: 61 LRGDNILAI 69
>gi|321262987|ref|XP_003196212.1| hypothetical Protein CGB_I3560W [Cryptococcus gattii WM276]
gi|317462687|gb|ADV24425.1| conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 197
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKG--KKKALPVNKDRFISKM 84
L +++ + L+G++ A+D+H N VL E T K KG + A + R + +
Sbjct: 9 LKVTLNDGRSLVGQMLAYDKHMNFVLAECEEFRTVKAKKAKGSSSEPAPTTQQKRTLGLV 68
Query: 85 FLRGDSVIIV 94
LRG++++ V
Sbjct: 69 ILRGETIVSV 78
>gi|71005460|ref|XP_757396.1| hypothetical protein UM01249.1 [Ustilago maydis 521]
gi|46096383|gb|EAK81616.1| hypothetical protein UM01249.1 [Ustilago maydis 521]
Length = 110
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 17 EEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKAL 73
E F+ LS+ + + ++ + +L G + A+D H N++L +V E + + + +
Sbjct: 25 EPFDLIRLSISERVYVKLRGDRELRGTLHAYDGHMNLILGDVEETIYVVDVNDESGSETV 84
Query: 74 PVNKDRFISKMFLRGDSVIIV 94
V K R +F+RGDSVI+V
Sbjct: 85 RVVK-RQSEMLFVRGDSVILV 104
>gi|308162403|gb|EFO64802.1| Small nuclear ribonucleoprotein Sm D2, putative [Giardia lamblia
P15]
Length = 83
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+++ +++ + G ++A+DRH N+V E W E + ++R L
Sbjct: 23 VLVQLRSGRFITGVLKAYDRHLNLVFSEATETWEE---------NGIEYTEER--KNFML 71
Query: 87 RGDSVIIVLRN 97
RGD+VI+V+ N
Sbjct: 72 RGDNVIMVVSN 82
>gi|406867312|gb|EKD20350.1| U6 snRNP-associated protein Lsm3 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 97
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 85
V+ + ++ + +L GR+ A+D HCN+VL +V E + + ++ ++K +F
Sbjct: 25 VVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETVYVVEEDEDEEETVKTIHKKS--EMLF 82
Query: 86 LRGDSVIIV 94
+RGDSV+++
Sbjct: 83 VRGDSVVLI 91
>gi|350416213|ref|XP_003490876.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm11-like [Bombus
impatiens]
Length = 223
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 21/77 (27%)
Query: 41 VRAFDRHCNMVLENVREMWTE----------LPKTGKGKKKALP---VNK--------DR 79
V AFD+H N+ LE+ E+WT P K K+ P V K +R
Sbjct: 145 VAAFDKHWNLALEDCFEVWTRKVKRKAPALGAPSGVKRKEDTAPKVVVKKIEGKEETLER 204
Query: 80 FISKMFLRGDSVIIVLR 96
+ +M LRG+ V I+++
Sbjct: 205 HVPQMLLRGEQVAIIVK 221
>gi|374633102|ref|ZP_09705469.1| small nuclear ribonucleoprotein [Metallosphaera yellowstonensis
MK1]
gi|373524586|gb|EHP69463.1| small nuclear ribonucleoprotein [Metallosphaera yellowstonensis
MK1]
Length = 78
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 42/70 (60%), Gaps = 14/70 (20%)
Query: 25 SVLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM 84
+++++ +K N ++ G ++++D+H N+VL + E+ ++ G GKK + +
Sbjct: 18 NLVLVKLKGNKEVRGLLKSYDQHMNLVLSDSEEIQSD----GGGKK----------MGTI 63
Query: 85 FLRGDSVIIV 94
+RGD+VI++
Sbjct: 64 VIRGDNVILI 73
>gi|350639679|gb|EHA28033.1| hypothetical protein ASPNIDRAFT_211308 [Aspergillus niger ATCC
1015]
Length = 723
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVRE 57
++ + ++ + +L GR+ A+D HCN+VL +V E
Sbjct: 26 IVFVKLRGDRELKGRLHAYDSHCNLVLGDVEE 57
>gi|403417353|emb|CCM04053.1| predicted protein [Fibroporia radiculosa]
Length = 97
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 16 EEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVRE--MWTELPKTGKGKK 70
+E F+ LS+ + + ++ + +L G + A+D H N++L +V E M + + K
Sbjct: 9 QEPFDLIRLSLSERVFVKLRGDRELTGVLHAYDGHMNLILSDVEETIMIVDQVEGAPEGK 68
Query: 71 KALPVNKDRFISKMFLRGDSVIIV 94
+ V K R + +F+RGD VI+V
Sbjct: 69 GTVNVAK-RKMEMLFVRGDGVILV 91
>gi|67515531|ref|XP_657651.1| hypothetical protein AN0047.2 [Aspergillus nidulans FGSC A4]
gi|40746210|gb|EAA65366.1| hypothetical protein AN0047.2 [Aspergillus nidulans FGSC A4]
Length = 725
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVRE 57
++ + ++ + +L GR+ A+D HCN+VL +V E
Sbjct: 26 IVFVKLRGDRELKGRLHAYDSHCNLVLGDVEE 57
>gi|393222057|gb|EJD07541.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 183
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFISKMF 85
L +++ + L G++ AFDRH N+VL + E K G++ P + R + +
Sbjct: 19 LKITLNDGRALTGQMLAFDRHMNLVLADCEEFRRVRAKKKAGEEGPAPEQEIKRSLGLVI 78
Query: 86 LRGDSVI 92
LRG+SV+
Sbjct: 79 LRGESVV 85
>gi|440474314|gb|ELQ43063.1| hypothetical protein OOU_Y34scaffold00174g28 [Magnaporthe oryzae
Y34]
Length = 78
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVRE 57
V+ + ++ + +L GR+ A+D HCN+VL +V E
Sbjct: 23 VVFVKLRGDRELKGRLHAYDSHCNLVLGDVEE 54
>gi|340711443|ref|XP_003394285.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm11-like [Bombus
terrestris]
Length = 223
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 21/77 (27%)
Query: 41 VRAFDRHCNMVLENVREMWTE----------LPKTGKGKKKALP---VNK--------DR 79
V AFD+H N+ LE+ E+WT P K K+ P V K +R
Sbjct: 145 VAAFDKHWNLALEDCFEVWTRKVKRKAPALGAPSGVKRKEDTAPKVVVKKIEGKEETLER 204
Query: 80 FISKMFLRGDSVIIVLR 96
+ +M LRG+ V I+++
Sbjct: 205 HVPQMLLRGEQVAIIVK 221
>gi|169861670|ref|XP_001837469.1| hypothetical protein CC1G_01381 [Coprinopsis cinerea
okayama7#130]
gi|116501490|gb|EAU84385.1| hypothetical protein CC1G_01381 [Coprinopsis cinerea
okayama7#130]
Length = 95
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 16 EEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA 72
+E F+ LS+ + + ++ + ++ G + A+D H N++L +V E + +
Sbjct: 9 QEPFDLIRLSLSERVFVKLRGDREMTGILHAYDGHMNLILSDVEETIMIVDTDAPNGQGV 68
Query: 73 LPVNKDRFISKMFLRGDSVIIV 94
+ + K R + +F+RGD VI+V
Sbjct: 69 VNIAK-RKMDMLFVRGDGVILV 89
>gi|91082993|ref|XP_974329.1| PREDICTED: similar to Small nuclear ribonucleoprotein-associated
protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB)
[Tribolium castaneum]
Length = 212
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 29 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 88
++++++ +G +AFD+H NM+L + E PK K +++ + R + + LRG
Sbjct: 17 ITLQDSRTFIGTFKAFDKHMNMILGDCEEFRKIKPKNSKVERE-----EKRVLGFVLLRG 71
Query: 89 DSVI 92
+S++
Sbjct: 72 ESIV 75
>gi|270008314|gb|EFA04762.1| hypothetical protein TcasGA2_TC030631 [Tribolium castaneum]
Length = 214
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 29 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 88
++++++ +G +AFD+H NM+L + E PK K +++ + R + + LRG
Sbjct: 19 ITLQDSRTFIGTFKAFDKHMNMILGDCEEFRKIKPKNSKVERE-----EKRVLGFVLLRG 73
Query: 89 DSVI 92
+S++
Sbjct: 74 ESIV 77
>gi|145348592|ref|XP_001418730.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578960|gb|ABO97023.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 93
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 7/48 (14%)
Query: 23 PLSVLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK 70
PL VLM K+ +L+G +R FD + NMVLE+V TE T +G++
Sbjct: 28 PLWVLM---KSERELVGTLRGFDVYVNMVLEDV----TEYETTAEGRR 68
>gi|302792292|ref|XP_002977912.1| hypothetical protein SELMODRAFT_107803 [Selaginella
moellendorffii]
gi|302810500|ref|XP_002986941.1| hypothetical protein SELMODRAFT_125039 [Selaginella
moellendorffii]
gi|300145346|gb|EFJ12023.1| hypothetical protein SELMODRAFT_125039 [Selaginella
moellendorffii]
gi|300154615|gb|EFJ21250.1| hypothetical protein SELMODRAFT_107803 [Selaginella
moellendorffii]
Length = 97
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 29/99 (29%)
Query: 14 TEEEEFNTGPLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVLENVR--------- 56
+EE+ PL ++ +S+ + + +L G++ A+D+H NM+L V
Sbjct: 3 SEEDGAVKEPLDLIRLSLDERIYVKLRADRELRGKLHAYDQHLNMILGEVEEVVTTTEID 62
Query: 57 -EMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
E + E+ KT K R + +F+RGD VI+V
Sbjct: 63 DETYEEIVKTTK-----------RQVPYLFVRGDGVILV 90
>gi|239637660|ref|ZP_04678632.1| glutamate N-acetyltransferase/amino-acid acetyltransferase
[Staphylococcus warneri L37603]
gi|239596878|gb|EEQ79403.1| glutamate N-acetyltransferase/amino-acid acetyltransferase
[Staphylococcus warneri L37603]
Length = 397
Score = 35.0 bits (79), Expect = 5.8, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 85
VL V NN ++L + F CNM+ +R + ++ K G+G K + V D+ ++
Sbjct: 229 VLSNGVANNKEILPNTKEFKTFCNMLEHVMRSLAIQIAKDGEGATKLIEVTVDKMTNEKS 288
Query: 86 LR 87
R
Sbjct: 289 AR 290
>gi|389860536|ref|YP_006362775.1| Like-Sm ribonucleoprotein, core [Thermogladius cellulolyticus
1633]
gi|388525439|gb|AFK50637.1| Like-Sm ribonucleoprotein, core [Thermogladius cellulolyticus
1633]
Length = 76
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 16/77 (20%)
Query: 18 EFNTGPLSVLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 77
E N G ++++ +K + G++R++D+H N+VL++ E+ G G + L
Sbjct: 11 EENVGK--IVLIKMKGEVSIRGKLRSYDQHLNIVLDDAEEVR------GDGSSRKL---- 58
Query: 78 DRFISKMFLRGDSVIIV 94
+ +RGD+V+++
Sbjct: 59 ----GTLVIRGDTVVLI 71
>gi|399217788|emb|CCF74675.1| unnamed protein product [Babesia microti strain RI]
Length = 138
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 31 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 90
+K+N + +G AFDRH N+VL + E + + K K+ PV R + + LRG++
Sbjct: 19 IKDNRRFIGVFIAFDRHMNLVLADCEE-YRMIKKQPSDKE---PVEIKRTLGFVLLRGEN 74
Query: 91 VI 92
V+
Sbjct: 75 VV 76
>gi|443895185|dbj|GAC72531.1| small nuclear ribonucleoprotein [Pseudozyma antarctica T-34]
Length = 104
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 17 EEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKAL 73
E F+ LS+ + + ++ + +L G + A+D H N++L +V E + + + +
Sbjct: 19 EPFDLIRLSISERVYVKLRGDRELRGTLHAYDGHMNLILGDVEETIYVVDINDENGHETV 78
Query: 74 PVNKDRFISKMFLRGDSVIIV 94
V K R +F+RGDSVI+V
Sbjct: 79 RVVK-RQSEMLFVRGDSVILV 98
>gi|255075507|ref|XP_002501428.1| predicted protein [Micromonas sp. RCC299]
gi|226516692|gb|ACO62686.1| predicted protein [Micromonas sp. RCC299]
Length = 573
Score = 34.7 bits (78), Expect = 6.6, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 22/113 (19%)
Query: 4 AMDEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQL--------------LGRVRAFDRHCN 49
A + G +E GPLSVL+ + ++ + ++AFD + N
Sbjct: 324 ARRDPVVGILADESRERGGPLSVLVKAFDEGRRIRVATRHRSGIRGVAVAYLKAFDVYMN 383
Query: 50 MVLENVREMWT--------ELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
MVL++V E +T + + G+ + K ++ R ++++FLRG+ V+ +
Sbjct: 384 MVLQDVHEAYTVRLRHSVVDPKRPGRTRVKYKLEHRRRHMNQVFLRGEQVVTI 436
>gi|347522771|ref|YP_004780341.1| Like-Sm ribonucleoprotein core [Pyrolobus fumarii 1A]
gi|343459653|gb|AEM38089.1| Like-Sm ribonucleoprotein core [Pyrolobus fumarii 1A]
Length = 75
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 39/70 (55%), Gaps = 14/70 (20%)
Query: 25 SVLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM 84
S++++ ++ + + G++++FD+H N+VLE E+ ++ R + +
Sbjct: 15 SIVLVKLRGDIVVRGKLKSFDQHLNLVLEEAEEIKSD--------------GSTRKLGTL 60
Query: 85 FLRGDSVIIV 94
+RGD+V+++
Sbjct: 61 VIRGDNVVLI 70
>gi|258567110|ref|XP_002584299.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237905745|gb|EEP80146.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 135
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVRE 57
++ + ++ + +L GR+ A+D HCN+VL +V E
Sbjct: 26 IVFVKLRGDRELKGRLHAYDSHCNLVLGDVEE 57
>gi|226294169|gb|EEH49589.1| GTP-binding protein AGP-1 [Paracoccidioides brasiliensis Pb18]
Length = 576
Score = 34.7 bits (78), Expect = 6.8, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVRE 57
V+ + ++ + +L GR+ A+D HCN+VL +V E
Sbjct: 26 VVFVKLRGDRELKGRLHAYDSHCNLVLGDVEE 57
>gi|303314473|ref|XP_003067245.1| U6 snRNA-associated Sm-like protein LSm3, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240106913|gb|EER25100.1| U6 snRNA-associated Sm-like protein LSm3, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320037539|gb|EFW19476.1| U6 small nuclear ribonucleoprotein [Coccidioides posadasii str.
Silveira]
gi|392869885|gb|EAS28419.2| U6 small nuclear ribonucleoprotein [Coccidioides immitis RS]
Length = 98
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 6 DEDTTGGKTEEEEFNTGPLS---VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTEL 62
DE G + E + LS ++ + ++ + +L GR+ A+D HCN+VL V E +
Sbjct: 3 DEADGGAPSFSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGEVEETVYVV 62
Query: 63 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+ ++ + + +F+RGDSV+++
Sbjct: 63 EEDENEEEIIKTIKRQE--DMLFVRGDSVVLI 92
>gi|398397489|ref|XP_003852202.1| hypothetical protein MYCGRDRAFT_104520 [Zymoseptoria tritici
IPO323]
gi|339472083|gb|EGP87178.1| hypothetical protein MYCGRDRAFT_104520 [Zymoseptoria tritici
IPO323]
Length = 99
Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 39 GRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
G++R FD N+V++ E+ + GKG+ +A ++ R + ++ L+GD+V ++
Sbjct: 44 GKIRGFDEFMNLVIDEA----VEVKQPGKGQTEADVKDQRRELGQILLKGDNVCLI 95
>gi|298714462|emb|CBJ27484.1| Small nuclear ribonucleoprotein-associated protein B [Ectocarpus
siliculosus]
Length = 217
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 29 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD----RFISKM 84
+++ + L+G + AFDRH N+VL + E PK KG + A ++++ R + +
Sbjct: 19 ITILDGRVLVGTLMAFDRHLNLVLGDCEEYRRFKPK--KGSEAAAGIHEEREEKRVLGLV 76
Query: 85 FLRGDSV 91
LRG++V
Sbjct: 77 LLRGENV 83
>gi|15920992|ref|NP_376661.1| small nuclear ribonucleoprotein [Sulfolobus tokodaii str. 7]
gi|342306290|dbj|BAK54379.1| archaeal Sm protein [Sulfolobus tokodaii str. 7]
Length = 79
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 14/70 (20%)
Query: 25 SVLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM 84
S +++ +K + + G ++++D H N+VLEN E+ ++ R + +
Sbjct: 19 STVLVKLKGDKIVRGTLKSYDMHMNLVLENSEEVMSD--------------GSTRKVGTI 64
Query: 85 FLRGDSVIIV 94
+RGD+VI+V
Sbjct: 65 IIRGDNVILV 74
>gi|56759110|gb|AAW27695.1| SJCHGC06652 protein [Schistosoma japonicum]
gi|226468894|emb|CAX76475.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226468896|emb|CAX76476.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226468898|emb|CAX76477.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226468900|emb|CAX76478.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226468904|emb|CAX76480.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226468906|emb|CAX76481.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226472872|emb|CAX71122.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
Length = 198
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 30 SVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGD 89
++++ QL+G +AFDRH N++L + E KT K K + R + + LRG+
Sbjct: 20 TMQDGRQLVGTFKAFDRHMNIILCDCDEFRQVKSKTAKQDKDR---QEKRALGLVLLRGE 76
Query: 90 SVI 92
V+
Sbjct: 77 HVV 79
>gi|212723246|ref|NP_001132868.1| uncharacterized protein LOC100194361 [Zea mays]
gi|194695618|gb|ACF81893.1| unknown [Zea mays]
Length = 107
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 12 GKTEEEEFNTGPLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVLENVREMWTELP 63
EEE PL ++ +S+ +++ +L G++ A+D+H NM+L +V E+ T +
Sbjct: 2 AAAEEEIAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 61
Query: 64 KTGKGKKKALPVNKDRFISKMFL 86
+ ++ + V+ F+ +F+
Sbjct: 62 IDDETYEEIVRVSSFAFLPLVFI 84
>gi|326521412|dbj|BAJ96909.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 264
Score = 34.3 bits (77), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 29 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKT 65
+++++ QL+G+ AFDRH N+VL + E + +LP +
Sbjct: 19 VTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPS 54
>gi|226468890|emb|CAX76473.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226468902|emb|CAX76479.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
Length = 198
Score = 34.3 bits (77), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 30 SVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGD 89
++++ QL+G +AFDRH N++L + E KT K K + R + + LRG+
Sbjct: 20 TMQDGRQLVGTFKAFDRHMNIILCDCDEFRQVKSKTAKQDKDR---QEKRSLGLVLLRGE 76
Query: 90 SVI 92
V+
Sbjct: 77 HVV 79
>gi|403221959|dbj|BAM40091.1| small nuclear ribonucleoprotein associated protein b [Theileria
orientalis strain Shintoku]
Length = 153
Score = 34.3 bits (77), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 29 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 88
+++K+N + +G + AFDRH N+VL + E L GK K + R + + LRG
Sbjct: 18 VTLKDNRKFVGTLVAFDRHMNLVLSDCEEFRMTL---GKDKNR---TEIKRTLGFVLLRG 71
Query: 89 DSVI 92
++++
Sbjct: 72 ENIV 75
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,556,168,227
Number of Sequences: 23463169
Number of extensions: 54133395
Number of successful extensions: 105744
Number of sequences better than 100.0: 820
Number of HSP's better than 100.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 336
Number of HSP's that attempted gapping in prelim test: 104469
Number of HSP's gapped (non-prelim): 830
length of query: 99
length of database: 8,064,228,071
effective HSP length: 68
effective length of query: 31
effective length of database: 6,468,732,579
effective search space: 200530709949
effective search space used: 200530709949
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 69 (31.2 bits)