BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034273
(99 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VI10|SMD2_DROME Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila
melanogaster GN=SmD2 PE=3 SV=1
Length = 119
Score = 122 bits (306), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 72/90 (80%), Positives = 76/90 (84%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTELP+TGKG
Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 82
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 83 KKKVKPVNKDRFISKMFLRGDSVILVLRNP 112
>sp|Q54NC5|SMD2_DICDI Probable small nuclear ribonucleoprotein Sm D2 OS=Dictyostelium
discoideum GN=snrpd2 PE=3 SV=1
Length = 112
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/108 (66%), Positives = 84/108 (77%), Gaps = 14/108 (12%)
Query: 1 MSRAMDEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNM 50
MSR M+++T K ++ GPLS+LM SV NNTQ LLGRVRAFDRHCNM
Sbjct: 1 MSR-MNDETMEDKPDDS---NGPLSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNM 56
Query: 51 VLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
VLENV+E+WTE+PKT KGKKKA P+NKDRFISKMFLRGDSVI+VL+NP
Sbjct: 57 VLENVKEIWTEVPKTAKGKKKAKPINKDRFISKMFLRGDSVILVLKNP 104
>sp|Q18786|SMD2_CAEEL Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis
elegans GN=snr-4 PE=1 SV=1
Length = 118
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/94 (73%), Positives = 77/94 (81%), Gaps = 10/94 (10%)
Query: 15 EEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPK 64
E+EEFN GPLS+L SVKNN Q LLGRV+AFDRHCNMVLENV+EMWTE+PK
Sbjct: 20 EDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPK 79
Query: 65 TGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
TGKGKKKA V KDRFISKMFLRGDSVI+V++NP
Sbjct: 80 TGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113
>sp|P62317|SMD2_MOUSE Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus GN=Snrpd2
PE=2 SV=1
Length = 118
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>sp|P62316|SMD2_HUMAN Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens GN=SNRPD2
PE=1 SV=1
Length = 118
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>sp|Q3SZF8|SMD2_BOVIN Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus GN=SNRPD2 PE=3
SV=1
Length = 118
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 77/90 (85%), Gaps = 10/90 (11%)
Query: 19 FNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKG 68
FNTGPLSVL SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKG
Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83
Query: 69 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>sp|O14036|SMD2_SCHPO Small nuclear ribonucleoprotein Sm D2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=smd2 PE=1 SV=1
Length = 115
Score = 112 bits (279), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 57/97 (58%), Positives = 68/97 (70%), Gaps = 11/97 (11%)
Query: 12 GKTEEEEFNTGPLSVLMMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTE 61
+ EE EF+ GPLSVL +VKN+ Q LL RV+AFDRH NMVLENV+EMWTE
Sbjct: 18 ARLEEYEFSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTE 77
Query: 62 LPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 98
+T G KK +NKDRFISKMFLRGD V++V+R P
Sbjct: 78 KKRTASG-KKGKAINKDRFISKMFLRGDGVVLVVRIP 113
>sp|Q06217|SMD2_YEAST Small nuclear ribonucleoprotein Sm D2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SMD2 PE=1 SV=2
Length = 110
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 64/87 (73%), Gaps = 17/87 (19%)
Query: 22 GPLSVL----------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 71
GP+S++ ++S++NN +++ RV+AFDRHCNMVLENV+E+WTE K GK
Sbjct: 29 GPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE--KKGKN--- 83
Query: 72 ALPVNKDRFISKMFLRGDSVIIVLRNP 98
+N++RFISK+FLRGDSVI+VL+ P
Sbjct: 84 --VINRERFISKLFLRGDSVIVVLKTP 108
>sp|Q9Y7M4|LSM3_SCHPO Probable U6 snRNA-associated Sm-like protein LSm3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=lsm3 PE=1 SV=2
Length = 93
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 26 VLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 85
++ + ++ + +L GR+ A+D H NMVL + E+ T K KAL + + +F
Sbjct: 21 IVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHY-EMLF 79
Query: 86 LRGDSVIIV 94
+RGDSVI++
Sbjct: 80 VRGDSVILI 88
>sp|P62311|LSM3_MOUSE U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3
PE=3 SV=2
Length = 102
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 15/102 (14%)
Query: 1 MSRAMDEDTTGGKTEEEEFNTGPLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVL 52
M+ +D+ T EE PL ++ +S+ +N+ +L GR+ A+D+H NM+L
Sbjct: 1 MADDVDQQQTTNTVEE------PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMIL 54
Query: 53 ENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+V E T + + ++ K R I +F+RGD V++V
Sbjct: 55 GDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDGVVLV 95
>sp|P62310|LSM3_HUMAN U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3
PE=1 SV=2
Length = 102
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 15/102 (14%)
Query: 1 MSRAMDEDTTGGKTEEEEFNTGPLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVL 52
M+ +D+ T EE PL ++ +S+ +N+ +L GR+ A+D+H NM+L
Sbjct: 1 MADDVDQQQTTNTVEE------PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMIL 54
Query: 53 ENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+V E T + + ++ K R I +F+RGD V++V
Sbjct: 55 GDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDGVVLV 95
>sp|Q32PE9|LSM3_BOVIN U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus GN=LSM3
PE=3 SV=3
Length = 102
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 15/102 (14%)
Query: 1 MSRAMDEDTTGGKTEEEEFNTGPLSVLMMSV--------KNNTQLLGRVRAFDRHCNMVL 52
M+ +D+ T EE PL ++ +S+ +N+ +L GR+ A+D+H NM+L
Sbjct: 1 MADDVDQQQTTNTVEE------PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMIL 54
Query: 53 ENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
+V E T + + ++ K R I +F+RGD V++V
Sbjct: 55 GDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDGVVLV 95
>sp|Q54HH8|SMDL_DICDI Small nuclear ribonucleoprotein Sm D-like protein OS=Dictyostelium
discoideum GN=DDB_G0289453 PE=3 SV=1
Length = 257
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 18/107 (16%)
Query: 6 DEDTTGGKTEEEEFNTGPLSVLMMSVKNNTQL--------------LGRVRAFDRHCNMV 51
+ED K +F GPLS+L ++++ +++ G + AFD+H N++
Sbjct: 149 NEDHKILKNISNKFTDGPLSLLKRALESKSKIKVMIRGTNCIRGYCRGYIIAFDKHMNII 208
Query: 52 LENVREMWT---ELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 95
L +V E + LP T + P K R+ ++F++GD+V+ V+
Sbjct: 209 LRDVEEEYDLLKSLPSTRNQNQPIQPKIK-RYYGQLFIKGDTVVSVI 254
>sp|Q1ZXK3|LSM3_DICDI Probable U6 snRNA-associated Sm-like protein LSm3
OS=Dictyostelium discoideum GN=lsm3 PE=3 SV=1
Length = 97
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 14 TEEEEFNTGPLSV---LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK 70
T EE + LS+ + + ++ + +L G++ A+D+H NM+L +V E + K + +
Sbjct: 8 TVEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEETDE 67
Query: 71 KALPVNKDRFISKMFLRGDSVIIV 94
+ + N R I +F+RGD VI++
Sbjct: 68 EIIR-NIKRNIKMLFVRGDGVILI 90
>sp|P57743|LSM3_YEAST U6 snRNA-associated Sm-like protein LSm3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM3 PE=1
SV=1
Length = 89
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 37 LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 94
L+G ++AFD HCN+VL + E +L + + R +F+RGD+V ++
Sbjct: 26 LVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESE-------RRCEMVFIRGDTVTLI 76
>sp|P17136|RSMB_RAT Small nuclear ribonucleoprotein-associated protein B (Fragment)
OS=Rattus norvegicus GN=Snrpb PE=2 SV=1
Length = 214
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 30 SVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGD 89
S++N +G +AFD+H N++L + E PK K ++ + R + + LRG+
Sbjct: 3 SLQNGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLGLVLLRGE 58
Query: 90 SVI 92
+++
Sbjct: 59 NLV 61
>sp|Q97BU5|RUXX_THEVO Putative snRNP Sm-like protein OS=Thermoplasma volcanium (strain
ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0360 PE=3 SV=2
Length = 83
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 22/83 (26%)
Query: 20 NTGPLSVL--------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 71
NT P+ VL ++ VK N + G + +D + N+VL+N E+ G+ K
Sbjct: 7 NTKPMDVLKNALSRNVLIDVKGNREYSGILEGYDVYMNVVLQNASEIIN-------GENK 59
Query: 72 ALPVNKDRFISKMFLRGDSVIIV 94
+ ++ +RGD+VI V
Sbjct: 60 GV-------FDRILVRGDNVIFV 75
>sp|P57670|RUXX_THEAC Putative snRNP Sm-like protein OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta1240 PE=3 SV=1
Length = 83
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 22/83 (26%)
Query: 20 NTGPLSVL--------MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 71
N P+ VL ++ VK N + G + +D + N+VL+N E+ G+ K
Sbjct: 7 NVKPMDVLKSALSRNVLIDVKGNREYSGILEGYDVYMNIVLQNASEIIN-------GENK 59
Query: 72 ALPVNKDRFISKMFLRGDSVIIV 94
+ ++ +RGD+VI V
Sbjct: 60 GV-------YDRVLVRGDNVIFV 75
>sp|P91918|RSMB_CAEEL Probable small nuclear ribonucleoprotein-associated protein B
OS=Caenorhabditis elegans GN=snr-2 PE=3 SV=1
Length = 160
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 31 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGK---GKKKALPVNKDRFISKMFLR 87
+++ +G +AFD+H N++L E PK GK G++K R + + +R
Sbjct: 21 LQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTDGEEK-------RILGLVLVR 73
Query: 88 GDSVI 92
G+ ++
Sbjct: 74 GEHIV 78
>sp|P63164|RSMN_RAT Small nuclear ribonucleoprotein-associated protein N OS=Rattus
norvegicus GN=Snrpn PE=2 SV=1
Length = 240
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 37 LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVI 92
+G +AFD+H N++L + E PK K ++ + R + + LRG++++
Sbjct: 27 FIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENLV 78
>sp|Q5R6I0|RSMN_PONAB Small nuclear ribonucleoprotein-associated protein N OS=Pongo
abelii GN=SNRPN PE=2 SV=1
Length = 240
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 37 LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVI 92
+G +AFD+H N++L + E PK K ++ + R + + LRG++++
Sbjct: 27 FIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENLV 78
>sp|P63163|RSMN_MOUSE Small nuclear ribonucleoprotein-associated protein N OS=Mus
musculus GN=Snrpn PE=2 SV=1
Length = 240
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 37 LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVI 92
+G +AFD+H N++L + E PK K ++ + R + + LRG++++
Sbjct: 27 FIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENLV 78
>sp|Q60HD3|RSMN_MACFA Small nuclear ribonucleoprotein-associated protein N OS=Macaca
fascicularis GN=SNRPN PE=2 SV=1
Length = 240
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 37 LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVI 92
+G +AFD+H N++L + E PK K ++ + R + + LRG++++
Sbjct: 27 FIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENLV 78
>sp|P63162|RSMN_HUMAN Small nuclear ribonucleoprotein-associated protein N OS=Homo
sapiens GN=SNRPN PE=1 SV=1
Length = 240
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 37 LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVI 92
+G +AFD+H N++L + E PK K ++ + R + + LRG++++
Sbjct: 27 FIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENLV 78
>sp|P27048|RSMB_MOUSE Small nuclear ribonucleoprotein-associated protein B OS=Mus
musculus GN=Snrpb PE=1 SV=1
Length = 231
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 37 LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVI 92
+G +AFD+H N++L + E PK K ++ + R + + LRG++++
Sbjct: 27 FIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLGLVLLRGENLV 78
>sp|Q17QN3|RSMN_BOVIN Small nuclear ribonucleoprotein-associated protein N OS=Bos
taurus GN=SNRPN PE=2 SV=1
Length = 240
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 37 LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVI 92
+G +AFD+H N++L + E PK K ++ + R + + LRG++++
Sbjct: 27 FIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENLV 78
>sp|Q0W8R9|RUXX_UNCMA Putative snRNP Sm-like protein OS=Uncultured methanogenic
archaeon RC-I GN=UNCMA_29510 PE=3 SV=1
Length = 72
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 14/70 (20%)
Query: 25 SVLMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM 84
S +++ +K + G ++ +D H N+VL+N E+ K + +K + +
Sbjct: 15 SPVIVRLKGGREFRGELQGYDMHMNLVLDNAEEL-----KENEASRK---------LGTI 60
Query: 85 FLRGDSVIIV 94
+RGD+V+ V
Sbjct: 61 IVRGDTVVYV 70
>sp|P14678|RSMB_HUMAN Small nuclear ribonucleoprotein-associated proteins B and B'
OS=Homo sapiens GN=SNRPB PE=1 SV=2
Length = 240
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 37 LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVI 92
+G +AFD+H N++L + E PK K ++ + R + + LRG++++
Sbjct: 27 FIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLGLVLLRGENLV 78
>sp|Q9TU67|RSMB_ERIEU Small nuclear ribonucleoprotein-associated protein B'
OS=Erinaceus europaeus GN=SNRPB PE=2 SV=1
Length = 240
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 37 LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVI 92
+G +AFD+H N++L + E PK K ++ + R + + LRG++++
Sbjct: 27 FIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLGLVLLRGENLV 78
>sp|Q9PV94|RSMB_CHICK Small nuclear ribonucleoprotein-associated protein B' OS=Gallus
gallus GN=SNRPB PE=2 SV=1
Length = 240
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 37 LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVI 92
+G +AFD+H N++L + E PK K ++ + R + + LRG++++
Sbjct: 27 FIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPER----EEKRVLGLVLLRGENLV 78
>sp|Q58DW4|RSMB_BOVIN Small nuclear ribonucleoprotein-associated protein B' OS=Bos
taurus GN=SNRPB PE=2 SV=1
Length = 240
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 37 LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVI 92
+G +AFD+H N++L + E PK K ++ + R + + LRG++++
Sbjct: 27 FIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLGLVLLRGENLV 78
>sp|Q9TU66|RSMB_MONDO Small nuclear ribonucleoprotein-associated protein B'
OS=Monodelphis domestica GN=SNRPB PE=2 SV=1
Length = 240
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 37 LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVI 92
+G +AFD+H N++L + E PK K ++ + R + + LRG++++
Sbjct: 27 FIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLGLVLLRGENLV 78
>sp|Q9N1Q0|RSMB_MACEU Small nuclear ribonucleoprotein-associated protein B' OS=Macropus
eugenii GN=SNRPB PE=2 SV=1
Length = 240
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 37 LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVI 92
+G +AFD+H N++L + E PK K ++ + R + + LRG++++
Sbjct: 27 FIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLGLVLLRGENLV 78
>sp|Q29329|SMD2_PIG Small nuclear ribonucleoprotein Sm D2 (Fragment) OS=Sus scrofa
GN=SNRPD2 PE=3 SV=1
Length = 50
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 19 FNTGPLSVLMMSVKNNTQLLGRVR 42
FNTGPLSV S K TQ+L R
Sbjct: 24 FNTGPLSVXTQSXKTXTQVLINCR 47
>sp|Q55A45|RSMB_DICDI Small nuclear ribonucleoprotein-associated protein B
OS=Dictyostelium discoideum GN=snrpb PE=3 SV=1
Length = 274
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Query: 27 LMMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 86
+ +++++ ++GR AFD+H N+V+ + E + + + GK ++ + R + + +
Sbjct: 18 MRVTIQDGRVIVGRFLAFDKHMNVVICDAEE-FRRIRQKGKEDRE-----EKRTLGMILI 71
Query: 87 RGDSVI 92
RG++V+
Sbjct: 72 RGETVV 77
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,461,602
Number of Sequences: 539616
Number of extensions: 1313244
Number of successful extensions: 2660
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2627
Number of HSP's gapped (non-prelim): 40
length of query: 99
length of database: 191,569,459
effective HSP length: 68
effective length of query: 31
effective length of database: 154,875,571
effective search space: 4801142701
effective search space used: 4801142701
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)