AmiGO: BLAST Results

Query Summary

Your job contains 1 sequence.
Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on
Query Sequence

>034274
MGNLSLGKILDCLCISSPGSCSCFCLNTFEGQDEFEKKPLMKSDGGQLLRLKDVVSGNQT
LAFQLKPKMVVVIGDIIPFEVLESVSKVKNAELWSASCY
High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with AT3G24450 AT3G24450 AT3G24450	protein from Arabidopsis thaliana	3.4e-23
BLAST match view associations BLAST with NAKR2 NAKR2 NAKR2 AT2G37390	protein from Arabidopsis thaliana	5.4e-05
BLAST match view associations BLAST with AT2G28660 AT2G28660 AT2G28660	protein from Arabidopsis thaliana	6.0e-05
BLAST match view associations BLAST with NAKR1 NAKR1 NAKR1 SODIUM POTASSIUM ROOT DEFECTIVE 1	protein from Arabidopsis thaliana	0.00059
Back to top
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  034274
        (99 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2094864 - symbol:AT3G24450 "AT3G24450" species...   177  3.4e-23   2
TAIR|locus:2049731 - symbol:NAKR2 "AT2G37390" species:370...   101  5.4e-05   1
TAIR|locus:2065526 - symbol:AT2G28660 "AT2G28660" species...    86  6.0e-05   2
TAIR|locus:2181718 - symbol:NAKR1 "SODIUM POTASSIUM ROOT ...    93  0.00059   1


>TAIR|locus:2094864 [details] [associations]
            symbol:AT3G24450 "AT3G24450" species:3702 "Arabidopsis
            thaliana" [GO:0005507 "copper ion binding" evidence=ISS]
            [GO:0006825 "copper ion transport" evidence=ISS] [GO:0030001 "metal
            ion transport" evidence=IEA] [GO:0046872 "metal ion binding"
            evidence=IEA] InterPro:IPR006121 Pfam:PF00403 PROSITE:PS50846
            EMBL:CP002686 GO:GO:0046872 GO:GO:0030001 SUPFAM:SSF55008
            EMBL:AP002048 EMBL:AF370237 EMBL:AY062958 IPI:IPI00531987
            RefSeq:NP_566747.1 UniGene:At.6777 ProteinModelPortal:Q9LHF4
            SMR:Q9LHF4 EnsemblPlants:AT3G24450.1 GeneID:822035
            KEGG:ath:AT3G24450 TAIR:At3g24450 InParanoid:Q9LHF4 OMA:FAELWVA
            PhylomeDB:Q9LHF4 ProtClustDB:CLSN2688732 ArrayExpress:Q9LHF4
            Genevestigator:Q9LHF4 Uniprot:Q9LHF4
        Length = 140

 Score = 177 (67.4 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
 Identities = 39/77 (50%), Positives = 55/77 (71%)

Query:     1 MGNLS-LGKILDCLCISSPGSCSCFCLNTF-EGQDEFEKKPLMKSD---GGQLLRLKDVV 55
             MG L  +G++ DCL + +   CSCFCLNT  + ++EFEK+PL+ S     G+++RLKDVV
Sbjct:     1 MGKLQKIGRVWDCLFLPT-NQCSCFCLNTLGDEEEEFEKEPLIDSSTEKSGKVMRLKDVV 59

Query:    56 SGN--QTLAFQLKPKMV 70
             + +  QTLAF LKPK+V
Sbjct:    60 AADHRQTLAFHLKPKIV 76

 Score = 105 (42.0 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
 Identities = 20/33 (60%), Positives = 28/33 (84%)

Query:    64 QLKPKMVVVIGDIIPFEVLESVSKVKNAELWSA 96
             +L+ K VVV G+I+P +VLES+ KVKNA+LWS+
Sbjct:   107 ELESKKVVVKGNILPVDVLESICKVKNAQLWSS 139


>TAIR|locus:2049731 [details] [associations]
            symbol:NAKR2 "AT2G37390" species:3702 "Arabidopsis
            thaliana" [GO:0005575 "cellular_component" evidence=ND] [GO:0030001
            "metal ion transport" evidence=IEA;ISS] [GO:0046872 "metal ion
            binding" evidence=IEA;ISS] InterPro:IPR006121 Pfam:PF00403
            PROSITE:PS50846 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0046872 GO:GO:0030001 SUPFAM:SSF55008 InterPro:IPR016578
            PIRSF:PIRSF011221 EMBL:AY954819 IPI:IPI00535820 RefSeq:NP_181275.2
            UniGene:At.37430 ProteinModelPortal:Q58FZ0 SMR:Q58FZ0 DNASU:818315
            EnsemblPlants:AT2G37390.1 GeneID:818315 KEGG:ath:AT2G37390
            TAIR:At2g37390 eggNOG:NOG303925 HOGENOM:HOG000238702
            InParanoid:Q58FZ0 OMA:TEKKTTC PhylomeDB:Q58FZ0
            ProtClustDB:CLSN2690603 Genevestigator:Q58FZ0 Uniprot:Q58FZ0
        Length = 259

 Score = 101 (40.6 bits), Expect = 5.4e-05, P = 5.4e-05
 Identities = 23/48 (47%), Positives = 30/48 (62%)

Query:    48 LLRLKDVVSGNQTLAFQLKPKMVVVIGDIIPFEVLESVSKVKNAELWS 95
             L R++ V S N   A     K V V GDI P E+L+S+SKVKNA+ W+
Sbjct:   202 LARMQGVTSFNIDFA----AKKVTVTGDITPLEILDSISKVKNAQFWT 245


>TAIR|locus:2065526 [details] [associations]
            symbol:AT2G28660 "AT2G28660" species:3702 "Arabidopsis
            thaliana" [GO:0005507 "copper ion binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0006825 "copper ion
            transport" evidence=ISS] [GO:0030001 "metal ion transport"
            evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
            [GO:0006612 "protein targeting to membrane" evidence=RCA]
            [GO:0009963 "positive regulation of flavonoid biosynthetic process"
            evidence=RCA] [GO:0010363 "regulation of plant-type hypersensitive
            response" evidence=RCA] InterPro:IPR006121 Pfam:PF00403
            PROSITE:PS50846 EMBL:CP002685 GO:GO:0046872 GO:GO:0030001
            SUPFAM:SSF55008 InterPro:IPR016578 PIRSF:PIRSF011221
            HOGENOM:HOG000238702 EMBL:AY303948 EMBL:BT029348 IPI:IPI00531133
            RefSeq:NP_180434.2 UniGene:At.14471 ProteinModelPortal:Q7XZS3
            SMR:Q7XZS3 EnsemblPlants:AT2G28660.1 GeneID:817415
            KEGG:ath:AT2G28660 TAIR:At2g28660 InParanoid:Q7XZS3 OMA:SSEMPLI
            PhylomeDB:Q7XZS3 ProtClustDB:CLSN2918118 Genevestigator:Q7XZS3
            Uniprot:Q7XZS3
        Length = 265

 Score = 86 (35.3 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
 Identities = 18/43 (41%), Positives = 26/43 (60%)

Query:    55 VSGNQTLAFQLKPKMVVVIGDIIPFEVLESVSKVKNAELWSAS 97
             + G  +    L  K V V+G I P  ++ES+SKVK A+LW +S
Sbjct:   207 MEGVTSYTIDLATKKVTVVGKITPVGLVESISKVKFAQLWPSS 249

 Score = 32 (16.3 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
 Identities = 6/14 (42%), Positives = 7/14 (50%)

Query:    25 CLNTFEGQDEFEKK 38
             C N+FE    F  K
Sbjct:    69 CRNSFESPSGFRPK 82


>TAIR|locus:2181718 [details] [associations]
            symbol:NAKR1 "SODIUM POTASSIUM ROOT DEFECTIVE 1"
            species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0030001 "metal ion transport" evidence=IEA;ISS]
            [GO:0046872 "metal ion binding" evidence=IEA;ISS;IDA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
            [GO:0009908 "flower development" evidence=IMP] [GO:0010015 "root
            morphogenesis" evidence=IMP] [GO:0010233 "phloem transport"
            evidence=IMP] [GO:0055078 "sodium ion homeostasis" evidence=IMP]
            InterPro:IPR006121 Pfam:PF00403 PROSITE:PS50846 GO:GO:0005634
            GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
            GO:GO:0009908 GO:GO:0055078 GO:GO:0030001 SUPFAM:SSF55008
            GO:GO:0010233 GO:GO:0010015 HOGENOM:HOG000238702 EMBL:AY085833
            EMBL:BT008344 EMBL:AK117227 EMBL:AK221722 IPI:IPI00544959
            RefSeq:NP_568105.1 RefSeq:NP_974723.1 UniGene:At.23074
            UniGene:At.33398 ProteinModelPortal:Q8LDS4 SMR:Q8LDS4 PRIDE:Q8LDS4
            EnsemblPlants:AT5G02600.1 EnsemblPlants:AT5G02600.2 GeneID:831874
            KEGG:ath:AT5G02600 TAIR:At5g02600 eggNOG:NOG298514
            InParanoid:Q8LDS4 OMA:ASTTTLC PhylomeDB:Q8LDS4
            ProtClustDB:CLSN2689410 Genevestigator:Q8LDS4 Uniprot:Q8LDS4
        Length = 319

 Score = 93 (37.8 bits), Expect = 0.00059, P = 0.00059
 Identities = 23/47 (48%), Positives = 27/47 (57%)

Query:    48 LLRLKDVVSGNQTLAFQLKPKMVVVIGDIIPFEVLESVSKVKNAELW 94
             L +LK V S N   A     K V V GD+ P  VL S+SKVKNA+ W
Sbjct:   271 LSKLKGVTSYNIDFA----AKKVTVTGDVTPLTVLASISKVKNAQFW 313


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.417    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       99        99   0.00091  102 3  11 22  0.39    30
                                                     29  0.46    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  533 (57 KB)
  Total size of DFA:  111 KB (2075 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.36u 0.14s 10.50t   Elapsed:  00:00:01
  Total cpu time:  10.36u 0.14s 10.50t   Elapsed:  00:00:01
  Start:  Mon May 20 15:56:50 2013   End:  Mon May 20 15:56:51 2013
Back to top
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data
