Query 034275
Match_columns 99
No_of_seqs 106 out of 724
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 20:07:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034275.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034275hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b6x_A AVRRPS4, avirulence pro 85.5 3.3 0.00011 25.2 5.9 47 33-79 33-82 (90)
2 2ke4_A CDC42-interacting prote 43.9 54 0.0018 20.1 5.0 63 13-75 16-78 (98)
3 2ld7_A Histone deacetylase com 32.6 86 0.0029 19.1 4.6 54 10-66 27-80 (94)
4 1nz0_A Ribonuclease P protein 29.9 44 0.0015 20.6 2.9 19 33-51 60-78 (118)
5 2ljp_A Ribonuclease P protein 29.1 44 0.0015 20.7 2.8 19 32-50 60-78 (119)
6 4am5_A Bacterioferritin; metal 27.6 1.1E+02 0.0039 19.3 4.7 33 11-43 94-126 (159)
7 1a6f_A RNAse P protein, ribonu 27.4 47 0.0016 20.6 2.7 18 33-50 59-76 (119)
8 1d6t_A Ribonuclease P, RNAse P 26.5 44 0.0015 20.6 2.4 20 32-51 57-76 (117)
9 3n9i_A Tryptophanyl-tRNA synth 26.4 1.5E+02 0.0052 21.9 5.7 38 36-75 295-332 (346)
10 2yy5_A Tryptophanyl-tRNA synth 24.2 1.3E+02 0.0044 22.2 5.0 36 36-75 297-332 (348)
11 3sz3_A Tryptophanyl-tRNA synth 23.5 1.9E+02 0.0064 21.3 5.7 37 37-75 291-327 (341)
12 2bid_A Protein (BID); programm 21.4 18 0.00062 25.1 -0.2 29 16-44 167-195 (197)
13 3gvy_A Bacterioferritin; iron 21.0 1.3E+02 0.0043 18.8 3.9 31 13-43 96-126 (161)
14 1yi8_B Tryptophanyl-tRNA synth 20.9 1.9E+02 0.0066 21.2 5.4 37 37-75 302-338 (351)
No 1
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=85.53 E-value=3.3 Score=25.21 Aligned_cols=47 Identities=15% Similarity=0.248 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHh
Q 034275 33 VREYTKRRAIDGFRENQNLTDPESIS---SAYAEGKNQLAIAKRQAVVYS 79 (99)
Q Consensus 33 ~r~~~~~~iR~~Fr~nk~~tD~~~I~---~ll~~g~~~L~~lkrq~~i~~ 79 (99)
..+-+.+.++++..+-.++-+|..|. .+|..|+.+|..+.++..|.+
T Consensus 33 DKQ~~i~~Lt~eLq~A~~eaNpaeIA~~~~~L~qAraDL~~l~r~~av~g 82 (90)
T 4b6x_A 33 DKQLMVNNLTDELQDAIDEANPAEIANTSQQLRHARADLADLQRRFAVLR 82 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35567888999999999999999885 689999999999999988753
No 2
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=43.92 E-value=54 Score=20.08 Aligned_cols=63 Identities=17% Similarity=0.218 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 034275 13 EILGLYRALLRAAREFRDYNVREYTKRRAIDGFRENQNLTDPESISSAYAEGKNQLAIAKRQA 75 (99)
Q Consensus 13 ~vl~LYR~lLR~ar~~~~~~~r~~~~~~iR~~Fr~nk~~tD~~~I~~ll~~g~~~L~~lkrq~ 75 (99)
+--.|=+++-+.-..+........-..+....|.+|-...||..++..|.+....++.++-..
T Consensus 16 RkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el 78 (98)
T 2ke4_A 16 QRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEV 78 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555543334455677999999999999999999999999999888885443
No 3
>2ld7_A Histone deacetylase complex subunit SAP30; transcription; NMR {Mus musculus}
Probab=32.64 E-value=86 Score=19.13 Aligned_cols=54 Identities=9% Similarity=0.079 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 034275 10 IRPEILGLYRALLRAAREFRDYNVREYTKRRAIDGFRENQNLTDPESISSAYAEGKN 66 (99)
Q Consensus 10 ~r~~vl~LYR~lLR~ar~~~~~~~r~~~~~~iR~~Fr~nk~~tD~~~I~~ll~~g~~ 66 (99)
....+|.=|+...+. ..+....+..+...++..|.. ..+...+.|..+|...+.
T Consensus 27 L~~~tLrrY~r~y~L--~~~~~~sK~qLa~aV~kHF~s-~~VdE~evI~~Fly~VK~ 80 (94)
T 2ld7_A 27 LQVNTLRRYKRHFKL--PTRPGLNKAQLVEIVGCHFKS-IPVNEKDTLTCFIYSVRN 80 (94)
T ss_dssp SCHHHHHHHHHHTTC--CCCSSCCHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCC--CCCCCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHh
Confidence 445677788887766 345444678899999999976 568888888888877653
No 4
>1nz0_A Ribonuclease P protein component; endonuclease, RNAse, ALFA-beta sandwich, dimer, structural genomics, BSGC structure funded by NIH; HET: MSE; 1.20A {Thermotoga maritima} SCOP: d.14.1.2 PDB: 3ok7_A 3okb_A 3q1q_A 3q1r_A
Probab=29.95 E-value=44 Score=20.62 Aligned_cols=19 Identities=32% Similarity=0.387 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhhcCCC
Q 034275 33 VREYTKRRAIDGFRENQNL 51 (99)
Q Consensus 33 ~r~~~~~~iR~~Fr~nk~~ 51 (99)
.|..+++.+|+.|+.+++.
T Consensus 60 ~RNRiKR~lRE~~R~~~~~ 78 (118)
T 1nz0_A 60 RRNKLKRWVREIFRRNKGV 78 (118)
T ss_dssp HHHHHHHHHHHHHHHHTTT
T ss_pred HHhHHHHHHHHHHHHHHhh
Confidence 6888999999999999874
No 5
>2ljp_A Ribonuclease P protein component; rnasep, ribozyme, hydrolase; NMR {Escherichia coli}
Probab=29.10 E-value=44 Score=20.67 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHhhcCC
Q 034275 32 NVREYTKRRAIDGFRENQN 50 (99)
Q Consensus 32 ~~r~~~~~~iR~~Fr~nk~ 50 (99)
..|..+++.+|+.|+.+++
T Consensus 60 V~RNRiKR~lRe~~R~~~~ 78 (119)
T 2ljp_A 60 HERNRIKRLTRESFRLRQH 78 (119)
T ss_dssp HHHHHHHHHHHHHHTTCTT
T ss_pred hHHhHHHHHHHHHHHHHHh
Confidence 4788999999999999876
No 6
>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A*
Probab=27.64 E-value=1.1e+02 Score=19.26 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 034275 11 RPEILGLYRALLRAAREFRDYNVREYTKRRAID 43 (99)
Q Consensus 11 r~~vl~LYR~lLR~ar~~~~~~~r~~~~~~iR~ 43 (99)
=..|...|+.+...|..-.|+..+..+...+.+
T Consensus 94 E~~~~~~~~~~~~~a~~~~D~~t~~~l~~il~e 126 (159)
T 4am5_A 94 EREARALYQEGAAYAASVGDFPSKNLFEELMGD 126 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 467788999999999887777766666655543
No 7
>1a6f_A RNAse P protein, ribonuclease P protein; endonuclease, subunit; 2.60A {Bacillus subtilis} SCOP: d.14.1.2
Probab=27.40 E-value=47 Score=20.59 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHhhcCC
Q 034275 33 VREYTKRRAIDGFRENQN 50 (99)
Q Consensus 33 ~r~~~~~~iR~~Fr~nk~ 50 (99)
.|..+++.+|+.|+.+++
T Consensus 59 ~RNRiKR~lRE~~R~~~~ 76 (119)
T 1a6f_A 59 MRNRIKRLIRQAFLEEKE 76 (119)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred hHhHHHHHHHHHHHHhhc
Confidence 688899999999999876
No 8
>1d6t_A Ribonuclease P, RNAse P protein; endonuclease, subunit, hydrolase; NMR {Staphylococcus aureus} SCOP: d.14.1.2
Probab=26.51 E-value=44 Score=20.62 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHhhcCCC
Q 034275 32 NVREYTKRRAIDGFRENQNL 51 (99)
Q Consensus 32 ~~r~~~~~~iR~~Fr~nk~~ 51 (99)
..|..+++.+|+.|+.+++.
T Consensus 57 V~RNRiKR~lRE~~R~~~~~ 76 (117)
T 1d6t_A 57 VLRNKIKRAIRENFKVHKSH 76 (117)
T ss_dssp THHHHHHHHHHHHHHHGGGT
T ss_pred hHHhHHHHHHHHHHHHhhcc
Confidence 36889999999999988763
No 9
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=26.42 E-value=1.5e+02 Score=21.93 Aligned_cols=38 Identities=11% Similarity=0.140 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 034275 36 YTKRRAIDGFRENQNLTDPESISSAYAEGKNQLAIAKRQA 75 (99)
Q Consensus 36 ~~~~~iR~~Fr~nk~~tD~~~I~~ll~~g~~~L~~lkrq~ 75 (99)
.+..-+|+.|.+-.+ |+..+...+++|.+....+...+
T Consensus 295 ~~L~pirer~~~~~~--~~~~l~~il~~G~~kA~~~A~~t 332 (346)
T 3n9i_A 295 GMLSELQERYRTYRE--DEALLQDVMREGAAKARARAQVT 332 (346)
T ss_dssp HHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc--CHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777776654 99999999999998887776554
No 10
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=24.25 E-value=1.3e+02 Score=22.16 Aligned_cols=36 Identities=14% Similarity=0.086 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 034275 36 YTKRRAIDGFRENQNLTDPESISSAYAEGKNQLAIAKRQA 75 (99)
Q Consensus 36 ~~~~~iR~~Fr~nk~~tD~~~I~~ll~~g~~~L~~lkrq~ 75 (99)
.+..-+|+.|.+. +|+. +...+.+|.+....+...+
T Consensus 297 ~~l~pire~~~~~---~d~~-~~~~l~~G~~~a~~~a~~t 332 (348)
T 2yy5_A 297 NLLVNIQRKREQI---SREQ-VFNCLQAGKNQAQATARTT 332 (348)
T ss_dssp HHHHHHHHHHHSS---CHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---cCch-HHHHHHHHHHHHHHHHHHH
Confidence 3445677777765 6888 9999999987776665443
No 11
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=23.46 E-value=1.9e+02 Score=21.33 Aligned_cols=37 Identities=16% Similarity=0.225 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 034275 37 TKRRAIDGFRENQNLTDPESISSAYAEGKNQLAIAKRQA 75 (99)
Q Consensus 37 ~~~~iR~~Fr~nk~~tD~~~I~~ll~~g~~~L~~lkrq~ 75 (99)
+..-+|+.|.+... |+..++..+++|.+........+
T Consensus 291 ~l~pirer~~~~~~--~~~~l~~il~~G~~kA~~~A~~t 327 (341)
T 3sz3_A 291 MLEPVQAEYQRIRN--DREYLNSVMRDGAEKASAKALQT 327 (341)
T ss_dssp HHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777776654 89999999999998887776544
No 12
>2bid_A Protein (BID); programmed cell death, apoptosis regulation and amplification; NMR {Homo sapiens} SCOP: f.1.4.1
Probab=21.38 E-value=18 Score=25.12 Aligned_cols=29 Identities=28% Similarity=0.524 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 034275 16 GLYRALLRAAREFRDYNVREYTKRRAIDG 44 (99)
Q Consensus 16 ~LYR~lLR~ar~~~~~~~r~~~~~~iR~~ 44 (99)
+|.|.++++.=.|-+.|++.|.++-+|++
T Consensus 167 SLLrdVF~TTVnfInqNl~aYvr~L~Rn~ 195 (197)
T 2bid_A 167 SLLRDVFHTTVNFINQNLRTYVRSLARNG 195 (197)
T ss_dssp TCHHHHHHHHHHHHHTTTHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 58899999998888889999999988864
No 13
>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides} SCOP: a.25.1.1
Probab=21.03 E-value=1.3e+02 Score=18.75 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 034275 13 EILGLYRALLRAAREFRDYNVREYTKRRAID 43 (99)
Q Consensus 13 ~vl~LYR~lLR~ar~~~~~~~r~~~~~~iR~ 43 (99)
.+...|+.++..|..-.++..+..+...+.+
T Consensus 96 ~~~~~~~~~~~~A~~~~D~~t~~~l~~~~~e 126 (161)
T 3gvy_A 96 DARTLYIEARDHCEKVRDYPSKMLFEELIAD 126 (161)
T ss_dssp HHHHHHHHHHHHHTTTTCHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5777788888888776666655555544444
No 14
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=20.94 E-value=1.9e+02 Score=21.21 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 034275 37 TKRRAIDGFRENQNLTDPESISSAYAEGKNQLAIAKRQA 75 (99)
Q Consensus 37 ~~~~iR~~Fr~nk~~tD~~~I~~ll~~g~~~L~~lkrq~ 75 (99)
+..-+|+.|.+..+ |+..+...+.+|.+....+...+
T Consensus 302 ~l~pire~~~~~~~--~~~~l~~il~~G~~~a~~~a~~t 338 (351)
T 1yi8_B 302 VLAPIRTRRAEYER--DPDAVLRFVTEGTARGREVAAQT 338 (351)
T ss_dssp HHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466777766654 89999999999998887776554
Done!