Query 034275
Match_columns 99
No_of_seqs 106 out of 724
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 20:07:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034275.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034275hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1eh1a_ d.67.3.1 (A:) Ribosome 47.9 29 0.0021 21.9 7.2 68 2-71 102-175 (185)
2 d1is1a_ d.67.3.1 (A:) Ribosome 43.1 35 0.0025 21.5 7.3 68 2-71 101-174 (185)
3 d1ek8a_ d.67.3.1 (A:) Ribosome 40.3 39 0.0028 21.2 7.3 68 2-71 101-174 (185)
4 d1nz0a_ d.14.1.2 (A:) RNase P 31.8 19 0.0014 20.4 2.9 25 27-51 45-69 (109)
5 d1gg3a1 a.11.2.1 (A:82-187) Er 27.7 47 0.0034 18.3 4.3 33 34-66 70-102 (106)
6 d1ef1a1 a.11.2.1 (A:88-198) Mo 27.0 33 0.0024 19.2 3.4 32 34-65 78-109 (111)
7 d1a6fa_ d.14.1.2 (A:) RNase P 25.7 24 0.0017 20.1 2.6 19 32-50 57-75 (113)
8 d1yuza1 a.25.1.1 (A:23-157) Ni 23.0 48 0.0035 18.8 3.7 32 12-43 95-126 (135)
9 d1jgca_ a.25.1.1 (A:) Bacterio 22.8 64 0.0047 18.9 4.4 31 12-42 95-125 (160)
10 d1g7oa1 a.45.1.1 (A:76-215) Gl 22.7 33 0.0024 20.9 2.9 67 4-71 1-72 (140)
11 d1d6ta_ d.14.1.2 (A:) RNase P 22.5 26 0.0019 20.0 2.3 19 32-50 57-75 (117)
12 d2fkza1 a.25.1.1 (A:1-154) Bac 22.0 70 0.0051 18.4 4.7 32 11-42 94-125 (154)
13 d1gkza1 a.29.5.1 (A:38-185) Br 21.9 66 0.0048 19.4 4.3 44 7-50 51-97 (148)
14 d2bida_ f.1.4.1 (A:) Proapopto 20.1 9.4 0.00069 24.8 -0.2 29 16-44 167-195 (197)
No 1
>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus thermophilus [TaxId: 274]}
Probab=47.92 E-value=29 Score=21.88 Aligned_cols=68 Identities=13% Similarity=0.097 Sum_probs=38.9
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCCCCC------HHHHHHHHHHHHHHHHHH
Q 034275 2 VSPGQAAPIRPEILGLYRALLRAAREFRDYNVREYTKRRAIDGFRENQNLTD------PESISSAYAEGKNQLAIA 71 (99)
Q Consensus 2 ~~~~ms~~~r~~vl~LYR~lLR~ar~~~~~~~r~~~~~~iR~~Fr~nk~~tD------~~~I~~ll~~g~~~L~~l 71 (99)
.+|.+|...|.+....=+...-.++--- .+.|..+...++. +...+.++. ...|+.+.++.-+.++.+
T Consensus 102 ~iP~lT~E~R~elvK~~k~~~E~akv~i-R~iR~~~~~~ikk-~~k~~~iseD~~k~~~~eiq~ltd~~~~~id~~ 175 (185)
T d1eh1a_ 102 NIPPLTEERRKDLVRAVRQYAEEGRVAI-RNIRREALDKLKK-LAKELHLSEDETKRAEAEIQKITDEFIAKADQL 175 (185)
T ss_dssp ECCCCCTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh-hcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999998887777666665411 2444455444443 222333432 235555555555555444
No 2
>d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio parahaemolyticus [TaxId: 670]}
Probab=43.14 E-value=35 Score=21.46 Aligned_cols=68 Identities=12% Similarity=0.152 Sum_probs=39.1
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCCCCC------HHHHHHHHHHHHHHHHHH
Q 034275 2 VSPGQAAPIRPEILGLYRALLRAAREFRDYNVREYTKRRAIDGFRENQNLTD------PESISSAYAEGKNQLAIA 71 (99)
Q Consensus 2 ~~~~ms~~~r~~vl~LYR~lLR~ar~~~~~~~r~~~~~~iR~~Fr~nk~~tD------~~~I~~ll~~g~~~L~~l 71 (99)
.+|.+|...|.+...+-+...-.++--- .|.|......++..- .++.++. .+.|+.+.++.-..++.+
T Consensus 101 ~iP~lT~E~R~elvK~~k~~~E~akv~i-RniRr~~~~~ikk~~-k~~~iseD~~k~~~~~iq~ltd~~~~~id~~ 174 (185)
T d1is1a_ 101 PLPPLTEERRKDLVKIVRGEAEGGRVAV-RNIRRDANNDLKALL-KDKEISEDEDRKAQEEIQKLTDVAVKKIDEV 174 (185)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhh-ccCCCCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999998888777776665411 245555554554332 2334432 234555555555444443
No 3
>d1ek8a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Escherichia coli [TaxId: 562]}
Probab=40.35 E-value=39 Score=21.21 Aligned_cols=68 Identities=13% Similarity=0.195 Sum_probs=38.4
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCCCCC------HHHHHHHHHHHHHHHHHH
Q 034275 2 VSPGQAAPIRPEILGLYRALLRAAREFRDYNVREYTKRRAIDGFRENQNLTD------PESISSAYAEGKNQLAIA 71 (99)
Q Consensus 2 ~~~~ms~~~r~~vl~LYR~lLR~ar~~~~~~~r~~~~~~iR~~Fr~nk~~tD------~~~I~~ll~~g~~~L~~l 71 (99)
.+|.+|...|.+...+.++..-.++--- .+.|......++. +...+.++. ...|+.+.++.-..++.+
T Consensus 101 ~iP~lT~E~R~elvK~~k~~~E~~kv~i-R~iRr~~~~~ik~-~~k~~~iseD~~k~~~~~iq~ltd~~~~~id~~ 174 (185)
T d1ek8a_ 101 PLPPLTEERRKDLTKIVRGEAEQARVAV-RNVRRDANDKVKA-LLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAA 174 (185)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh-hcccCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999888888777765411 2444444444332 223344442 134555555544444443
No 4
>d1nz0a_ d.14.1.2 (A:) RNase P protein {Thermotoga maritima [TaxId: 2336]}
Probab=31.81 E-value=19 Score=20.41 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=19.1
Q ss_pred ccCChhHHHHHHHHHHHHHhhcCCC
Q 034275 27 EFRDYNVREYTKRRAIDGFRENQNL 51 (99)
Q Consensus 27 ~~~~~~~r~~~~~~iR~~Fr~nk~~ 51 (99)
++.....|..+++.+|+.|+.+.+.
T Consensus 45 Kvg~AV~RNriKR~lRe~~r~~~~~ 69 (109)
T d1nz0a_ 45 KFGKATRRNKLKRWVREIFRRNKGV 69 (109)
T ss_dssp GGCSHHHHHHHHHHHHHHHHHHTTT
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhh
Confidence 3443447889999999999998764
No 5
>d1gg3a1 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.69 E-value=47 Score=18.34 Aligned_cols=33 Identities=6% Similarity=0.114 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 034275 34 REYTKRRAIDGFRENQNLTDPESISSAYAEGKN 66 (99)
Q Consensus 34 r~~~~~~iR~~Fr~nk~~tD~~~I~~ll~~g~~ 66 (99)
...+...|-..++..++.+..+....+|+.+++
T Consensus 70 ~~~~~~~I~~~h~~l~G~s~~~A~~~fL~~~~~ 102 (106)
T d1gg3a1 70 TKELEEKVMELHKSYRSMTPAQADLEFLENAKK 102 (106)
T ss_dssp CHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCcCHHHHHHHHHHHHhc
Confidence 356788999999999999988888888887763
No 6
>d1ef1a1 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.97 E-value=33 Score=19.19 Aligned_cols=32 Identities=6% Similarity=0.068 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 034275 34 REYTKRRAIDGFRENQNLTDPESISSAYAEGK 65 (99)
Q Consensus 34 r~~~~~~iR~~Fr~nk~~tD~~~I~~ll~~g~ 65 (99)
...+...|.+.++..++.+..+....+|+.++
T Consensus 78 ~~~~~~~I~~~h~~l~g~s~~~A~~~fL~~~~ 109 (111)
T d1ef1a1 78 KDQWEERIQVWHEEHRGMLREDAVLEYLKIAQ 109 (111)
T ss_dssp HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHh
Confidence 36788899999999999999888888887764
No 7
>d1a6fa_ d.14.1.2 (A:) RNase P protein {Bacillus subtilis [TaxId: 1423]}
Probab=25.66 E-value=24 Score=20.07 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHhhcCC
Q 034275 32 NVREYTKRRAIDGFRENQN 50 (99)
Q Consensus 32 ~~r~~~~~~iR~~Fr~nk~ 50 (99)
-.|..+++.+|+.|+.+.+
T Consensus 57 V~RNriKR~lRe~~r~~~~ 75 (113)
T d1a6fa_ 57 VMRNRIKRLIRQAFLEEKE 75 (113)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3688899999999998875
No 8
>d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=22.98 E-value=48 Score=18.81 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 034275 12 PEILGLYRALLRAAREFRDYNVREYTKRRAID 43 (99)
Q Consensus 12 ~~vl~LYR~lLR~ar~~~~~~~r~~~~~~iR~ 43 (99)
..+..+|+.+++.|+.-.++.....|.+.+.+
T Consensus 95 ~e~~~~Y~~~~~~A~~~~d~~~~~~f~~i~~~ 126 (135)
T d1yuza1 95 YETSDMYPAFIRKAQEEGNSKAVHVFTRAKLA 126 (135)
T ss_dssp HHHHTHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35677788888888776666666666655544
No 9
>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter capsulatus [TaxId: 1061]}
Probab=22.79 E-value=64 Score=18.87 Aligned_cols=31 Identities=19% Similarity=0.172 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 034275 12 PEILGLYRALLRAAREFRDYNVREYTKRRAI 42 (99)
Q Consensus 12 ~~vl~LYR~lLR~ar~~~~~~~r~~~~~~iR 42 (99)
..++..|+++...|..-.|+.....+...+.
T Consensus 95 ~~~~~~~~~~~~~a~~~~D~~t~~~l~~~l~ 125 (160)
T d1jgca_ 95 HDALKLYREARDYCAEVGDIVSKNIFESLIT 125 (160)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3456666666666665555444444443333
No 10
>d1g7oa1 a.45.1.1 (A:76-215) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}
Probab=22.67 E-value=33 Score=20.87 Aligned_cols=67 Identities=13% Similarity=0.148 Sum_probs=35.8
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhc--cC---ChhHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Q 034275 4 PGQAAPIRPEILGLYRALLRAARE--FR---DYNVREYTKRRAIDGFRENQNLTDPESISSAYAEGKNQLAIA 71 (99)
Q Consensus 4 ~~ms~~~r~~vl~LYR~lLR~ar~--~~---~~~~r~~~~~~iR~~Fr~nk~~tD~~~I~~ll~~g~~~L~~l 71 (99)
|+.+.+.+..+...++++--..++ +| .-.+-++....+|+-|.+.|.-. .--.++++++....+..+
T Consensus 1 p~lt~~~~~~I~~W~k~v~~~~~kL~~PR~~~~~lpEF~T~~A~~~f~~kKe~~-~g~f~~~l~~t~~li~~l 72 (140)
T d1g7oa1 1 PLLTGKRSPAIEEWLRKVNGYANKLLLPRFAKSAFDEFSTPAARKYFVDKKEAS-AGNFADLLAHSDGLIKNI 72 (140)
T ss_dssp CTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGCSHHHHHHHHTTTTTT-CTHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHHHhcCcccCCCCcccCCHHHHHHHHHhhhhh-cCCHHHHHHcCHHHHHHH
Confidence 666777777777766666555553 22 11233444667777776655432 223445555554444444
No 11
>d1d6ta_ d.14.1.2 (A:) RNase P protein {Staphylococcus aureus [TaxId: 1280]}
Probab=22.47 E-value=26 Score=20.00 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHhhcCC
Q 034275 32 NVREYTKRRAIDGFRENQN 50 (99)
Q Consensus 32 ~~r~~~~~~iR~~Fr~nk~ 50 (99)
..|..+++.+|+.|+.+.+
T Consensus 57 V~RNriKR~lRe~~R~~~~ 75 (117)
T d1d6ta_ 57 VLRNKIKRAIRENFKVHKS 75 (117)
T ss_dssp THHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHhhhc
Confidence 3688899999999998875
No 12
>d2fkza1 a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1) {Azotobacter vinelandii [TaxId: 354]}
Probab=22.01 E-value=70 Score=18.36 Aligned_cols=32 Identities=19% Similarity=0.117 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 034275 11 RPEILGLYRALLRAAREFRDYNVREYTKRRAI 42 (99)
Q Consensus 11 r~~vl~LYR~lLR~ar~~~~~~~r~~~~~~iR 42 (99)
-..++..|+++.+.|....|+.....+...+.
T Consensus 94 E~~~~~~y~~~~~~a~~~~D~~t~~~l~~il~ 125 (154)
T d2fkza1 94 EQAGLPDLKAAIAYCESVGDYASRELLEDILE 125 (154)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34667778888888777666655555554444
No 13
>d1gkza1 a.29.5.1 (A:38-185) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=21.86 E-value=66 Score=19.43 Aligned_cols=44 Identities=9% Similarity=0.113 Sum_probs=33.9
Q ss_pred CcchHHHHHHHHHHHHHHHhccCChh---HHHHHHHHHHHHHhhcCC
Q 034275 7 AAPIRPEILGLYRALLRAAREFRDYN---VREYTKRRAIDGFRENQN 50 (99)
Q Consensus 7 s~~~r~~vl~LYR~lLR~ar~~~~~~---~r~~~~~~iR~~Fr~nk~ 50 (99)
..++-++|..+|-+.+..-+.||... ....|...+.+-..+|.+
T Consensus 51 ~np~i~~V~~~Y~~SF~~l~~~~~~~~~ed~~~F~~~l~~i~~rH~~ 97 (148)
T d1gkza1 51 CNPTILHVHELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDHKD 97 (148)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHHHHTTT
T ss_pred cCchHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHhcc
Confidence 35677899999999999999988542 345677777777777764
No 14
>d2bida_ f.1.4.1 (A:) Proapoptotic molecule Bid {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.05 E-value=9.4 Score=24.83 Aligned_cols=29 Identities=28% Similarity=0.524 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 034275 16 GLYRALLRAAREFRDYNVREYTKRRAIDG 44 (99)
Q Consensus 16 ~LYR~lLR~ar~~~~~~~r~~~~~~iR~~ 44 (99)
+|.|.++++.-.|-+.|++.|.++-+|.+
T Consensus 167 sLLr~Vf~TTvnfInqnl~~YvrnL~Rn~ 195 (197)
T d2bida_ 167 SLLRDVFHTTVNFINQNLRTYVRSLARNG 195 (197)
T ss_dssp TCHHHHHHHHHHHHHTTTHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 58899999998888888999999988864
Done!