Query 034276
Match_columns 99
No_of_seqs 102 out of 591
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 20:08:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034276.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034276hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wgk_A Riken cDNA 2900073H19 p 100.0 5.2E-35 1.8E-39 194.7 8.3 97 1-99 12-108 (114)
2 2k9x_A Tburm1, uncharacterized 100.0 3.3E-34 1.1E-38 189.8 7.3 96 1-99 5-102 (110)
3 2qjl_A URM1, ubiquitin-related 100.0 3.5E-31 1.2E-35 171.3 10.3 96 1-99 2-99 (99)
4 3dwg_C 9.5 kDa culture filtrat 100.0 8.5E-30 2.9E-34 162.4 9.0 91 1-99 1-93 (93)
5 3po0_A Small archaeal modifier 99.9 4.8E-27 1.6E-31 148.4 9.3 88 2-99 2-89 (89)
6 1vjk_A Molybdopterin convertin 99.9 1.4E-26 4.6E-31 149.3 10.4 89 1-99 10-98 (98)
7 2g1e_A Hypothetical protein TA 99.9 3.9E-26 1.3E-30 143.8 9.3 88 3-99 2-90 (90)
8 2l52_A Methanosarcina acetivor 99.9 5.4E-26 1.8E-30 147.0 9.8 89 1-99 4-99 (99)
9 1v8c_A MOAD related protein; r 99.8 2.7E-21 9.4E-26 135.7 7.6 87 3-99 1-87 (168)
10 1fm0_D Molybdopterin convertin 99.8 6.4E-21 2.2E-25 117.9 7.0 81 2-99 1-81 (81)
11 3rpf_C Molybdopterin convertin 99.8 5.2E-20 1.8E-24 113.0 7.5 74 1-99 1-74 (74)
12 2q5w_D Molybdopterin convertin 99.8 9.1E-20 3.1E-24 111.8 6.6 77 3-99 1-77 (77)
13 1f0z_A THis protein; ubiquitin 99.4 1.7E-13 5.7E-18 82.1 3.4 57 23-99 10-66 (66)
14 2cu3_A Unknown function protei 99.4 1.1E-12 3.7E-17 78.2 5.3 52 33-99 13-64 (64)
15 1rws_A Hypothetical protein PF 99.3 2E-13 6.8E-18 84.2 -0.2 67 8-99 11-77 (77)
16 1tyg_B YJBS; alpha beta barrel 99.2 8.2E-12 2.8E-16 79.1 5.1 57 23-99 30-87 (87)
17 1ryj_A Unknown; beta/alpha pro 99.1 1.4E-10 4.7E-15 70.2 6.2 55 21-99 16-70 (70)
18 2l32_A Small archaeal modifier 99.1 1.2E-10 4.2E-15 71.5 4.9 66 1-99 1-66 (74)
19 2kl0_A Putative thiamin biosyn 98.7 7.9E-09 2.7E-13 63.1 4.0 52 33-99 14-65 (73)
20 2k5p_A THis protein, thiamine- 98.6 1.5E-08 5E-13 62.7 3.2 53 33-99 17-69 (78)
21 2hj1_A Hypothetical protein; s 98.5 5E-07 1.7E-11 58.0 7.2 73 1-97 13-87 (97)
22 2kmm_A Guanosine-3',5'-BIS(dip 97.7 8.7E-05 3E-09 43.8 5.8 66 1-98 1-66 (73)
23 3a9j_A Ubiquitin; protein comp 97.2 0.0018 6.1E-08 37.6 6.7 74 1-99 1-76 (76)
24 1ndd_A NEDD8, protein (ubiquit 97.1 0.002 6.7E-08 37.4 6.1 74 1-99 1-76 (76)
25 3n3k_B Ubiquitin; hydrolase, p 96.9 0.0039 1.3E-07 37.0 6.5 74 1-99 4-79 (85)
26 3mtn_B UBA80, ubcep1, ubiquiti 96.8 0.0036 1.2E-07 37.1 6.0 74 1-99 4-79 (85)
27 3hvz_A Uncharacterized protein 96.6 0.0023 7.8E-08 39.2 3.8 51 23-95 18-68 (78)
28 3k9o_B Ubiquitin, UBB+1; E2-25 96.6 0.0092 3.1E-07 36.4 6.5 74 1-99 2-77 (96)
29 3dbh_I NEDD8; cell cycle, acti 96.5 0.0072 2.5E-07 36.2 5.7 74 1-99 13-88 (88)
30 1yx5_B Ubiquitin; proteasome, 96.5 0.014 4.8E-07 36.0 7.0 74 1-99 1-76 (98)
31 4hcn_B Polyubiquitin, ubiquiti 96.4 0.012 4E-07 36.5 6.4 74 1-99 23-98 (98)
32 4fbj_B NEDD8; effector-HOST ta 96.3 0.016 5.4E-07 35.2 6.6 74 1-99 1-76 (88)
33 1wh3_A 59 kDa 2'-5'-oligoadeny 96.2 0.013 4.5E-07 35.0 5.6 74 1-99 8-83 (87)
34 1sif_A Ubiquitin; hydrophobic 96.2 0.018 6.2E-07 35.0 6.2 74 1-99 10-85 (88)
35 3vdz_A Ubiquitin-40S ribosomal 95.8 0.027 9.2E-07 35.8 6.1 74 1-99 36-111 (111)
36 2ojr_A Ubiquitin; lanthide-bin 95.7 0.034 1.2E-06 35.2 6.3 74 1-99 36-111 (111)
37 2l7r_A Ubiquitin-like protein 95.7 0.023 7.9E-07 34.9 5.2 72 1-99 20-93 (93)
38 1v5o_A 1700011N24RIK protein; 95.5 0.07 2.4E-06 33.2 6.9 79 1-99 8-88 (102)
39 3phx_B Ubiquitin-like protein 95.4 0.049 1.7E-06 31.9 5.8 73 1-98 5-79 (79)
40 2hj8_A Interferon-induced 17 k 95.4 0.038 1.3E-06 33.4 5.3 74 1-99 5-80 (88)
41 1wy8_A NP95-like ring finger p 95.3 0.053 1.8E-06 32.5 5.7 75 1-99 8-85 (89)
42 2uyz_B Small ubiquitin-related 95.2 0.02 6.7E-07 33.7 3.5 64 20-99 15-79 (79)
43 3l0w_B Monoubiquitinated proli 95.2 0.066 2.3E-06 36.5 6.6 74 1-99 1-76 (169)
44 1wyw_B Ubiquitin-like protein 94.9 0.035 1.2E-06 34.3 4.2 75 1-99 22-97 (97)
45 1uel_A HHR23B, UV excision rep 94.8 0.11 3.8E-06 31.8 6.3 69 1-94 1-74 (95)
46 3q3f_A Ribonuclease/ubiquitin 94.7 0.074 2.5E-06 37.3 5.8 74 1-99 106-181 (189)
47 2io0_B Small ubiquitin-related 94.6 0.29 1E-05 30.2 7.9 64 20-99 17-81 (91)
48 2io1_B Small ubiquitin-related 94.5 0.23 8E-06 30.8 7.3 64 20-99 19-83 (94)
49 3b08_A Polyubiquitin-C, ubiqui 94.3 0.17 5.8E-06 32.7 6.6 74 1-99 1-76 (152)
50 3v6c_B Ubiquitin; structural g 94.2 0.12 4.2E-06 31.1 5.4 69 1-94 18-88 (91)
51 2d07_B Ubiquitin-like protein 94.2 0.35 1.2E-05 29.8 7.6 64 20-99 29-93 (93)
52 3b08_A Polyubiquitin-C, ubiqui 94.0 0.18 6.1E-06 32.5 6.2 63 20-99 88-152 (152)
53 2wyq_A HHR23A, UV excision rep 94.0 0.2 6.9E-06 29.4 6.0 69 1-94 6-79 (85)
54 3u30_A Ubiquitin, linear DI-ub 93.7 0.23 8E-06 33.2 6.6 74 1-99 21-96 (172)
55 2bwf_A Ubiquitin-like protein 93.7 0.3 1E-05 28.0 6.3 60 20-96 15-76 (77)
56 3m62_B UV excision repair prot 93.7 0.15 5.3E-06 31.9 5.3 68 1-93 2-71 (106)
57 1wgd_A Homocysteine-responsive 93.6 0.13 4.4E-06 31.2 4.8 76 1-99 8-89 (93)
58 2eke_C Ubiquitin-like protein 93.2 0.53 1.8E-05 30.0 7.3 64 20-99 42-106 (106)
59 1wia_A Hypothetical ubiquitin- 93.1 0.29 9.9E-06 29.7 5.8 69 1-94 8-76 (95)
60 3u5e_m 60S ribosomal protein L 93.1 0.017 5.7E-07 37.6 0.0 74 1-99 1-76 (128)
61 2eki_A DRG 1, developmentally- 93.0 0.36 1.2E-05 30.4 6.2 48 32-96 34-88 (93)
62 1wz0_A Ubiquitin-like protein 92.9 0.51 1.7E-05 29.8 6.9 64 20-99 36-100 (104)
63 2dzi_A Ubiquitin-like protein 92.8 0.25 8.5E-06 28.6 5.0 70 1-95 8-79 (81)
64 3rt3_B Ubiquitin-like protein 92.6 0.31 1.1E-05 32.0 5.8 63 20-99 93-157 (159)
65 1wx8_A Riken cDNA 4931431F19; 92.6 0.15 5.2E-06 31.0 3.9 73 1-99 18-92 (96)
66 2kk8_A Uncharacterized protein 92.5 0.17 5.9E-06 30.4 4.1 69 1-93 11-81 (84)
67 1we6_A Splicing factor, putati 92.5 0.43 1.5E-05 29.9 6.1 63 20-99 42-107 (111)
68 1v2y_A 3300001G02RIK protein; 92.1 0.22 7.6E-06 31.7 4.4 82 1-98 8-98 (105)
69 1j8c_A Ubiquitin-like protein 92.0 0.33 1.1E-05 31.5 5.2 73 1-99 33-107 (125)
70 3u5c_f 40S ribosomal protein S 91.9 0.03 1E-06 38.0 0.0 74 1-99 1-76 (152)
71 1wm3_A Ubiquitin-like protein 91.7 1.1 3.9E-05 25.9 6.9 58 20-93 13-71 (72)
72 3b1l_X E3 ubiquitin-protein li 90.9 0.034 1.1E-06 32.3 0.0 73 1-98 1-75 (76)
73 1wgg_A Ubiquitin carboxyl-term 91.5 0.54 1.8E-05 28.9 5.5 66 1-93 8-76 (96)
74 2kan_A Uncharacterized protein 91.5 0.9 3.1E-05 27.7 6.6 73 1-99 16-91 (94)
75 4dwf_A HLA-B-associated transc 91.4 0.5 1.7E-05 28.1 5.3 34 1-47 6-39 (90)
76 1yqb_A Ubiquilin 3; structural 91.4 0.36 1.2E-05 29.9 4.7 73 1-99 23-97 (100)
77 2bps_A YUKD protein; ubiquitin 91.3 0.73 2.5E-05 28.1 5.9 75 2-93 6-81 (81)
78 2faz_A Ubiquitin-like containi 91.2 0.96 3.3E-05 25.9 6.3 71 1-95 3-76 (78)
79 1wx7_A Ubiquilin 3; ubiquitin- 91.2 0.3 1E-05 30.4 4.2 73 1-99 18-92 (106)
80 3rt3_B Ubiquitin-like protein 90.8 1.6 5.3E-05 28.5 7.7 71 1-95 3-76 (159)
81 2kdi_A Ubiquitin, vacuolar pro 90.8 1.2 4E-05 28.2 6.8 63 20-99 21-85 (114)
82 1ttn_A DC-UBP, dendritic cell- 90.6 0.66 2.3E-05 28.8 5.4 69 1-94 24-94 (106)
83 4a20_A Ubiquitin-like protein 90.5 1 3.5E-05 28.0 6.2 70 1-93 20-93 (98)
84 1v86_A DNA segment, CHR 7, way 90.3 0.7 2.4E-05 28.2 5.3 57 20-94 28-86 (95)
85 3va4_A Mediator of DNA damage 90.3 0.22 7.6E-06 32.7 3.1 26 67-92 91-116 (132)
86 2k8h_A Small ubiquitin protein 90.2 0.54 1.9E-05 30.1 4.8 64 20-99 38-102 (110)
87 1v5t_A 8430435I17RIK protein; 89.8 0.49 1.7E-05 28.6 4.2 69 1-94 8-81 (90)
88 3fm8_A Kinesin-like protein KI 89.3 0.2 6.8E-06 32.7 2.2 23 66-92 91-113 (124)
89 2pjh_A Protein NPL4, nuclear p 89.3 0.32 1.1E-05 29.2 3.0 60 23-94 18-79 (80)
90 4eew_A Large proline-rich prot 88.5 0.92 3.1E-05 26.8 4.7 34 1-47 18-51 (88)
91 2dzj_A Synaptic glycoprotein S 88.5 1 3.6E-05 27.2 5.0 70 1-92 11-85 (88)
92 4ejq_A Kinesin-like protein KI 88.0 0.31 1E-05 32.7 2.5 23 66-92 111-133 (154)
93 3u30_A Ubiquitin, linear DI-ub 87.9 1.3 4.4E-05 29.5 5.6 63 20-99 108-172 (172)
94 3goe_A DNA repair protein RAD6 87.6 1.1 3.6E-05 27.6 4.5 58 21-93 22-80 (82)
95 1we7_A SF3A1 protein; structur 87.3 1.1 3.8E-05 28.2 4.8 63 20-99 47-111 (115)
96 1wln_A Afadin; beta sandwich, 87.0 0.36 1.2E-05 30.8 2.3 24 66-93 81-104 (120)
97 1oqy_A HHR23A, UV excision rep 86.8 2.6 8.8E-05 32.2 7.4 68 1-93 8-81 (368)
98 1wwt_A Threonyl-tRNA synthetas 86.7 0.57 2E-05 28.0 3.0 45 33-94 28-72 (88)
99 2klc_A Ubiquilin-1; ubiquitin- 86.4 4 0.00014 25.0 7.8 71 1-97 26-98 (101)
100 2bb6_A TCII, TC II, transcobal 85.6 3.9 0.00013 31.9 7.9 64 20-92 331-409 (414)
101 3u7z_A Putative metal binding 85.0 3.2 0.00011 26.2 6.0 60 32-93 28-96 (101)
102 4egx_A Kinesin-like protein KI 84.8 0.53 1.8E-05 32.6 2.4 25 64-92 139-163 (184)
103 2kdb_A Homocysteine-responsive 84.3 1.7 5.7E-05 27.0 4.4 36 1-47 24-59 (99)
104 3plu_A Ubiquitin-like modifier 83.6 2.5 8.6E-05 26.3 5.0 68 1-93 22-91 (93)
105 2kzr_A Ubiquitin thioesterase 83.4 1.8 6.2E-05 25.7 4.2 34 1-48 1-35 (86)
106 3a4r_A Nfatc2-interacting prot 83.3 5.1 0.00017 23.5 6.2 58 20-93 20-78 (79)
107 1wjn_A Tubulin-folding protein 83.1 5.7 0.00019 23.9 6.9 66 20-94 24-91 (97)
108 2bs2_B Quinol-fumarate reducta 83.1 7.8 0.00027 27.0 8.0 61 21-94 26-93 (241)
109 3w1s_C Ubiquitin-like protein 82.8 2.5 8.7E-05 26.2 4.7 49 2-72 8-58 (91)
110 4h87_A Kanadaptin; FHA domain 81.4 0.92 3.1E-05 29.5 2.4 24 67-92 96-119 (130)
111 1uh6_A Ubiquitin-like 5; beta- 81.1 1.5 5E-05 27.7 3.2 68 1-93 29-98 (100)
112 3po8_A RV0020C protein, putati 81.0 0.65 2.2E-05 28.4 1.5 21 67-92 67-87 (100)
113 3hx1_A SLR1951 protein; P74513 80.0 0.77 2.6E-05 29.8 1.7 22 67-93 84-105 (131)
114 4gdk_A Ubiquitin-like protein 80.0 4.1 0.00014 25.1 5.0 38 2-47 5-43 (91)
115 3tix_A Ubiquitin-like protein 79.6 6.6 0.00023 27.9 6.5 64 20-99 68-132 (207)
116 3pge_A SUMO-modified prolifera 79.5 9.2 0.00031 26.8 7.2 64 20-99 40-104 (200)
117 2gow_A HCG-1 protein, ubiquiti 78.4 11 0.00038 24.3 7.7 25 20-49 29-53 (125)
118 2pie_A E3 ubiquitin-protein li 78.3 1.6 5.3E-05 28.4 2.8 29 67-97 77-105 (138)
119 2xt9_B Putative signal transdu 78.1 1.1 3.7E-05 28.2 1.9 21 67-92 75-95 (115)
120 1gxc_A CHK2, CDS1, serine/thre 77.8 0.97 3.3E-05 29.9 1.7 27 67-95 105-131 (149)
121 1uht_A Expressed protein; FHA 77.8 0.93 3.2E-05 28.6 1.5 24 67-92 78-101 (118)
122 1tke_A Threonyl-tRNA synthetas 77.4 2.8 9.5E-05 29.2 4.0 50 23-94 12-61 (224)
123 1lgp_A Cell cycle checkpoint p 77.2 1 3.5E-05 28.2 1.6 27 67-95 70-96 (116)
124 2xzm_9 RPS31E; ribosome, trans 76.8 0.5 1.7E-05 33.2 0.0 69 1-99 1-71 (189)
125 3m63_B Ubiquitin domain-contai 76.3 1.6 5.4E-05 27.0 2.2 56 21-93 40-97 (101)
126 2k6p_A Uncharacterized protein 75.5 1.7 5.8E-05 26.1 2.2 23 67-93 28-50 (92)
127 3gqs_A Adenylate cyclase-like 75.4 0.9 3.1E-05 28.1 0.9 22 67-92 71-92 (106)
128 2jqj_A DNA damage response pro 75.4 1.2 4.2E-05 29.4 1.6 25 67-94 89-113 (151)
129 2kfu_A RV1827 PThr 22; FHA dom 74.4 1.8 6.1E-05 29.3 2.3 21 67-92 119-139 (162)
130 2csw_A Ubiquitin ligase protei 74.3 2.1 7E-05 28.1 2.5 27 67-95 85-111 (145)
131 2h88_B Succinate dehydrogenase 73.8 19 0.00066 25.3 7.8 61 21-94 33-101 (252)
132 3oun_A Putative uncharacterize 73.6 1.3 4.6E-05 29.9 1.5 21 67-92 129-149 (157)
133 2kd0_A LRR repeats and ubiquit 72.5 7.4 0.00025 22.9 4.6 58 20-94 23-82 (85)
134 1wf9_A NPL4 family protein; be 72.4 9 0.00031 23.6 5.1 23 22-48 20-42 (107)
135 2kb3_A Oxoglutarate dehydrogen 72.3 1.2 4.1E-05 29.4 1.0 21 67-92 110-130 (143)
136 2pmv_A Gastric intrinsic facto 71.5 10 0.00036 29.3 6.2 67 21-93 315-395 (399)
137 2jxx_A Nfatc2-interacting prot 71.1 13 0.00046 22.9 5.7 54 21-93 39-96 (97)
138 1r21_A Antigen KI-67; beta san 70.9 1.2 4.1E-05 28.5 0.7 22 67-92 77-98 (128)
139 1dmz_A Protein (protein kinase 70.7 1.4 4.7E-05 29.5 1.0 25 67-93 85-109 (158)
140 2ns5_A Partitioning-defective 70.1 5 0.00017 24.7 3.4 40 1-53 3-42 (85)
141 1dm9_A Hypothetical 15.5 KD pr 70.0 4.1 0.00014 26.5 3.2 23 67-93 36-58 (133)
142 1wxv_A BAG-family molecular ch 69.7 11 0.00036 22.2 4.9 74 1-94 8-83 (92)
143 4dbg_A Ranbp-type and C3HC4-ty 69.5 16 0.00055 23.0 5.8 65 12-93 30-97 (105)
144 3ai5_A Yeast enhanced green fl 69.0 9.5 0.00032 28.4 5.4 58 20-94 245-304 (307)
145 1c05_A Ribosomal protein S4 de 68.9 4.5 0.00016 27.1 3.3 27 67-96 78-104 (159)
146 3kyd_D Small ubiquitin-related 68.8 20 0.00068 22.9 6.8 60 20-95 52-112 (115)
147 1qu5_A Protein kinase SPK1; FH 67.8 1.7 6E-05 29.8 1.0 25 67-93 109-133 (182)
148 3kt9_A Aprataxin; FHA domain, 67.6 2.2 7.7E-05 26.9 1.5 27 68-96 67-93 (102)
149 1g3g_A Protien kinase SPK1; FH 67.5 3.2 0.00011 27.8 2.3 27 67-95 109-135 (164)
150 1x1m_A Ubiquitin-like protein 67.5 9.4 0.00032 23.4 4.4 77 1-94 13-98 (107)
151 1g6g_A Protein kinase RAD53; b 67.4 3.6 0.00012 26.2 2.5 28 67-96 81-108 (127)
152 1wgh_A Ubiquitin-like 3, HCG-1 66.7 22 0.00075 22.6 8.6 37 1-50 17-53 (116)
153 3shq_A UBLCP1; phosphatase, hy 66.1 16 0.00053 27.1 6.1 31 20-55 16-48 (320)
154 3kwl_A Uncharacterized protein 66.0 6 0.00021 31.2 4.0 73 1-94 23-101 (514)
155 3jxo_A TRKA-N domain protein; 65.5 8.8 0.0003 22.1 3.8 26 68-95 47-72 (86)
156 1mzk_A Kinase associated prote 64.4 2.7 9.2E-05 27.3 1.4 26 67-92 78-109 (139)
157 1wju_A NEDD8 ultimate buster-1 63.8 7.1 0.00024 24.4 3.3 58 19-93 30-89 (100)
158 4hv0_A AVTR; ribbon-helix-heli 62.6 6.8 0.00023 25.0 3.0 61 1-77 1-65 (106)
159 2wdq_B Succinate dehydrogenase 61.9 35 0.0012 23.5 7.0 72 1-86 1-81 (238)
160 2vqe_D 30S ribosomal protein S 60.8 6.5 0.00022 27.6 3.0 25 67-94 126-150 (209)
161 2al3_A TUG long isoform; TUG U 60.8 12 0.0004 23.2 3.8 23 21-48 22-44 (90)
162 3els_A PRE-mRNA leakage protei 60.6 2.6 9E-05 28.3 0.8 25 67-93 119-143 (158)
163 2jpe_A Nuclear inhibitor of pr 60.5 1.5 5.2E-05 28.5 -0.3 24 67-92 102-125 (140)
164 2lxa_A Ubiquitin-like protein 58.0 19 0.00065 21.5 4.4 35 1-46 2-37 (87)
165 3elv_A PRE-mRNA leakage protei 57.2 4.4 0.00015 28.6 1.6 27 67-95 166-192 (205)
166 1kf6_B Fumarate reductase iron 56.9 45 0.0015 23.0 7.6 77 1-87 4-84 (243)
167 4a9a_A Ribosome-interacting GT 56.7 13 0.00044 28.2 4.2 17 78-94 359-375 (376)
168 2exd_A NFED short homolog; mem 56.6 19 0.00065 21.4 4.2 32 61-94 27-58 (80)
169 1se9_A Ubiquitin family; ubiqu 56.3 38 0.0013 21.9 6.9 23 22-49 31-53 (126)
170 1p9k_A ORF, hypothetical prote 55.8 5.7 0.0002 23.2 1.7 23 67-92 48-70 (79)
171 1v6e_A Cytoskeleton-associated 55.3 30 0.001 20.5 7.4 61 21-93 21-85 (95)
172 3ivf_A Talin-1; FERM domain, c 54.5 51 0.0017 24.2 7.1 62 22-94 16-83 (371)
173 1wgr_A Growth factor receptor- 53.5 22 0.00076 22.2 4.3 22 21-47 22-43 (100)
174 2ff4_A Probable regulatory pro 53.1 5 0.00017 30.0 1.3 22 67-92 350-371 (388)
175 1wv3_A Similar to DNA segregat 52.7 5.8 0.0002 28.1 1.6 22 67-92 137-159 (238)
176 2brf_A Bifunctional polynucleo 51.4 7 0.00024 25.0 1.7 27 67-95 72-98 (110)
177 2k5h_A Conserved protein; stru 48.8 18 0.00062 22.4 3.3 28 65-94 57-84 (101)
178 3bbn_D Ribosomal protein S4; s 48.8 11 0.00037 26.5 2.4 25 67-94 116-140 (201)
179 2l76_A Nfatc2-interacting prot 47.3 49 0.0017 20.5 5.3 60 20-95 32-92 (95)
180 4ar0_A Type IV pilus biogenesi 46.8 13 0.00044 24.0 2.4 71 12-95 27-104 (128)
181 3vr8_B Iron-sulfur subunit of 46.5 30 0.001 25.3 4.6 65 21-94 57-125 (282)
182 3v7o_A Minor nucleoprotein VP3 43.7 5.2 0.00018 28.8 0.2 64 20-99 32-96 (227)
183 1c1y_B Proto-onkogene serine/t 42.9 16 0.00055 22.0 2.3 27 14-45 7-33 (77)
184 3ec0_A Protease; HIV-2, inhibi 42.2 17 0.00058 22.7 2.4 26 62-87 8-36 (99)
185 3cp0_A Membrane protein implic 41.9 24 0.00081 20.6 2.9 30 65-94 40-70 (82)
186 3tla_A MCCF; serine protease, 41.8 15 0.0005 27.9 2.4 17 82-98 38-54 (371)
187 2daf_A FLJ35834 protein; hypot 41.5 69 0.0023 20.6 6.3 23 20-47 28-50 (118)
188 2fl8_A Baseplate structural pr 41.5 19 0.00066 29.3 3.1 33 62-98 218-250 (602)
189 1ksk_A Ribosomal small subunit 41.3 13 0.00046 25.7 2.0 24 67-93 30-53 (234)
190 1ug1_A KIAA1010 protein; struc 40.6 50 0.0017 20.5 4.3 19 77-95 29-47 (92)
191 1vct_A Hypothetical protein PH 40.1 35 0.0012 23.2 4.0 22 74-95 161-182 (205)
192 2k14_A YUAF protein; NFED-like 40.1 28 0.00097 20.4 3.1 29 66-94 38-70 (84)
193 3mub_A Alanine racemase; alpha 39.5 26 0.00089 26.2 3.5 29 67-95 295-332 (367)
194 2akk_A RP4479, PHNA-like prote 39.3 16 0.00056 21.8 1.8 17 77-93 6-22 (74)
195 1vd2_A Protein kinase C, IOTA 38.8 65 0.0022 19.6 4.7 36 1-50 7-42 (89)
196 2hs1_A HIV-1 protease; ultra-h 38.2 18 0.00061 22.6 2.0 25 62-86 8-35 (99)
197 2kjr_A CG11242; UBL, ubiquitin 37.6 66 0.0023 19.3 5.4 62 20-93 29-93 (95)
198 2l05_A Serine/threonine-protei 37.5 22 0.00076 22.2 2.4 29 12-45 21-49 (95)
199 1wxm_A A-RAF proto-oncogene se 37.5 13 0.00043 23.0 1.2 31 10-45 9-39 (86)
200 2fnj_B Transcription elongatio 37.4 69 0.0024 20.4 4.8 35 1-47 1-35 (118)
201 1vio_A Ribosomal small subunit 37.1 17 0.00057 25.4 1.9 24 67-93 29-52 (243)
202 1wxq_A GTP-binding protein; st 36.7 17 0.00057 27.5 2.0 49 32-95 347-395 (397)
203 1wz3_A Autophagy 12B, ATG12B, 36.2 37 0.0013 20.9 3.3 38 2-47 13-51 (96)
204 4b6w_A Tubulin-specific chaper 36.2 58 0.002 19.1 4.1 62 20-93 16-81 (86)
205 2kj6_A Tubulin folding cofacto 36.0 72 0.0025 19.2 5.1 62 20-93 28-93 (97)
206 3qij_A Protein 4.1; cytoskelet 35.5 64 0.0022 23.1 4.9 24 20-48 29-52 (296)
207 3uf8_A Ubiquitin-like protein 35.3 1.1E+02 0.0036 21.0 6.5 63 20-98 32-95 (209)
208 1y8x_B Ubiquitin-activating en 35.0 26 0.00088 21.8 2.4 20 22-46 8-27 (98)
209 3slz_A GAG-Pro-POL polyprotein 35.0 25 0.00087 22.9 2.5 28 59-86 19-49 (132)
210 2nsc_A Trigger factor, TF; cha 34.7 56 0.0019 20.0 4.0 43 1-51 1-45 (109)
211 1oey_A P67-PHOX, neutrophil cy 33.7 79 0.0027 19.0 4.4 48 21-75 16-65 (83)
212 3dh3_A Ribosomal large subunit 33.5 19 0.00065 26.3 1.8 23 67-93 33-55 (290)
213 3hur_A Alanine racemase; struc 33.4 36 0.0012 25.8 3.4 31 65-95 301-340 (395)
214 3ix6_A TS, tsase, thymidylate 33.3 9 0.00031 29.3 0.0 64 20-99 32-96 (360)
215 3soe_A Membrane-associated gua 32.9 12 0.00042 23.6 0.6 36 58-93 47-88 (113)
216 3e5p_A Alanine racemase; ALR, 32.8 26 0.0009 26.2 2.5 29 67-95 299-336 (371)
217 1p9y_A Trigger factor, TF; alp 32.4 74 0.0025 19.9 4.3 43 1-51 4-48 (121)
218 1jal_A YCHF protein; nucleotid 31.9 19 0.00066 27.1 1.6 16 77-92 344-359 (363)
219 4a3q_A Alanine racemase 1; iso 31.6 40 0.0014 25.3 3.4 31 65-95 295-334 (382)
220 1yj5_C 5' polynucleotide kinas 30.7 20 0.00069 24.0 1.4 28 67-96 72-99 (143)
221 3ny5_A Serine/threonine-protei 30.1 33 0.0011 21.4 2.3 27 14-45 19-45 (96)
222 3r8n_D 30S ribosomal protein S 29.9 6.4 0.00022 27.8 -1.2 60 32-94 82-146 (205)
223 2lte_A Specialized acyl carrie 35.6 11 0.00039 23.1 0.0 13 33-45 85-97 (103)
224 2kkc_A Sequestosome-1; P62, PB 29.3 1E+02 0.0036 19.1 5.2 19 34-52 42-60 (102)
225 2dby_A GTP-binding protein; GD 29.2 18 0.00063 27.1 1.1 16 77-92 349-364 (368)
226 2ohf_A Protein OLA1, GTP-bindi 29.2 23 0.00077 27.1 1.6 20 77-96 370-389 (396)
227 3kmh_A D-lyxose isomerase; cup 29.1 49 0.0017 24.0 3.3 35 62-96 154-188 (246)
228 1af8_A Actinorhodin polyketide 29.0 11 0.00036 21.7 -0.2 15 32-46 67-81 (86)
229 3l4b_C TRKA K+ channel protien 28.3 52 0.0018 21.8 3.2 25 69-95 180-204 (218)
230 2kdd_A Borealin; protein dimer 27.8 15 0.00052 21.9 0.4 18 82-99 15-32 (76)
231 2dls_A PDZ-rhogef, RHO guanine 27.7 24 0.00083 20.5 1.3 32 61-92 47-81 (93)
232 3uv0_A Mutator 2, isoform B; F 27.3 9.5 0.00032 24.2 -0.7 18 67-89 64-81 (102)
233 4gmv_A RAS-associated and plec 27.2 91 0.0031 22.7 4.6 34 3-47 32-65 (281)
234 3ivf_A Talin-1; FERM domain, c 26.8 93 0.0032 22.8 4.6 24 20-48 97-120 (371)
235 3j20_D 30S ribosomal protein S 26.6 24 0.00081 24.3 1.2 28 67-97 130-161 (180)
236 4g65_A TRK system potassium up 26.3 56 0.0019 25.0 3.5 24 68-93 417-440 (461)
237 1ef1_A Moesin; membrane, FERM 26.3 1.1E+02 0.0038 21.3 4.9 34 1-48 2-35 (294)
238 2v31_A Ubiquitin-activating en 26.0 1.1E+02 0.0037 19.3 4.2 39 54-92 8-50 (112)
239 2hah_A Protease, retropepsin; 25.7 19 0.00063 23.1 0.5 15 62-77 14-28 (116)
240 2arc_A ARAC, arabinose operon 25.6 33 0.0011 21.2 1.8 31 65-95 41-71 (164)
241 2vsp_A PDZ domain-containing p 25.3 17 0.00058 21.0 0.3 32 61-92 45-80 (91)
242 1ni3_A YCHF GTPase, YCHF GTP-b 25.1 21 0.00071 27.1 0.8 16 77-92 372-387 (392)
243 1fmb_A EIAV protease; hydrolas 24.8 32 0.0011 21.4 1.5 16 62-77 8-23 (104)
244 1t0y_A Tubulin folding cofacto 24.6 1.3E+02 0.0044 18.6 6.5 62 21-93 20-84 (122)
245 3kw3_A Alanine racemase; niaid 24.4 88 0.003 23.4 4.2 31 64-94 302-344 (376)
246 1pv8_A Delta-aminolevulinic ac 24.0 35 0.0012 25.8 1.8 35 7-47 204-242 (330)
247 2kwl_A ACP, acyl carrier prote 24.0 10 0.00035 21.7 -0.9 14 33-46 69-82 (84)
248 2xzm_D Ribosomal protein S4 co 23.3 25 0.00084 24.2 0.8 30 67-99 134-167 (181)
249 4ecl_A Serine racemase, vantg; 23.3 91 0.0031 23.1 4.0 31 65-95 297-338 (374)
250 2d3o_1 Trigger factor, TF; rib 23.2 44 0.0015 20.6 1.9 42 1-51 1-44 (112)
251 1rrb_A RAF-1 RBD, RAF proto-on 23.1 40 0.0014 21.5 1.7 31 10-45 20-50 (107)
252 2kjp_A Uncharacterized protein 23.1 17 0.00058 21.5 -0.1 32 61-92 18-53 (91)
253 3g2b_A Coenzyme PQQ synthesis 22.8 44 0.0015 20.3 1.8 20 32-51 54-73 (95)
254 2ava_A ACP I, acyl carrier pro 22.7 14 0.00047 20.9 -0.5 14 33-46 64-77 (82)
255 2lol_A ACP, acyl carrier prote 22.6 10 0.00035 21.4 -1.1 13 33-45 66-78 (81)
256 4da1_A Protein phosphatase 1K, 22.5 18 0.00063 27.0 0.0 64 20-99 41-105 (389)
257 2p3w_A Probable serine proteas 21.9 7.7 0.00026 23.5 -1.9 30 61-90 53-83 (112)
258 2aef_A Calcium-gated potassium 21.8 1.2E+02 0.0042 20.1 4.2 18 78-95 200-217 (234)
259 1v9f_A Ribosomal large subunit 21.7 19 0.00066 26.3 0.0 24 67-93 44-67 (325)
260 1xgs_A Methionine aminopeptida 21.6 2E+02 0.007 20.4 5.5 28 65-92 52-81 (295)
261 3pvl_A Myosin VIIA isoform 1; 21.2 3E+02 0.01 22.1 7.0 24 20-48 275-298 (655)
262 3d37_A Tail protein, 43 kDa; s 21.1 43 0.0015 24.9 1.8 64 32-95 109-179 (381)
263 1v70_A Probable antibiotics sy 21.1 69 0.0024 17.8 2.5 27 66-92 53-79 (105)
264 2cnr_A FAS, ACP, acyl carrier 21.0 12 0.0004 21.1 -1.1 13 33-45 67-79 (82)
265 4i4a_A Similar to unknown prot 20.7 47 0.0016 19.9 1.7 31 64-94 56-86 (128)
266 3vhx_B Kinesin-like protein KI 20.6 15 0.0005 24.0 -0.7 21 76-99 76-96 (120)
267 1uit_A Human discs large 5 pro 20.0 29 0.001 21.0 0.6 32 61-92 60-95 (117)
No 1
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=100.00 E-value=5.2e-35 Score=194.66 Aligned_cols=97 Identities=56% Similarity=1.020 Sum_probs=89.1
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCc
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQL 80 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~ 80 (99)
|+|+|+|+|+||+++|+++++++++|. ..+++||++||++|+++||..++++|+++|++||+|+|+|||+||++++|+
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~vel~~--~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~gl 89 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQVALPG--QEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELLGEL 89 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEEEEECC--CSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHHHHCTT
T ss_pred cEEEEEEchHHHHHhCCceEEEEEeCC--CCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeeeccCCc
Confidence 789999999999999987667899882 012369999999999999999999999999999999999999999999999
Q ss_pred cCccCCCCEEEEEecCCCC
Q 034276 81 DTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 81 ~t~L~dgD~V~i~p~v~GG 99 (99)
+|+|+|||+|+||||+|||
T Consensus 90 dt~L~dGDeV~iip~vaGG 108 (114)
T 1wgk_A 90 DYQLQDQDSILFISTLHGG 108 (114)
T ss_dssp TCBCCSSEEEEEEECSCCC
T ss_pred CcCCCCCCEEEEeCCCCCC
Confidence 9999999999999999998
No 2
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=100.00 E-value=3.3e-34 Score=189.83 Aligned_cols=96 Identities=40% Similarity=0.692 Sum_probs=86.5
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCC--ccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGD--SVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g--~l~~~v~ilvNg~di~~l~ 78 (99)
|+|+|+|+|+||+++|+ ++++++|..+ ++++||++||++|+++||..++++|.++| ++||+|+|||||+||++++
T Consensus 5 m~v~V~f~g~l~~l~g~--~~~v~l~~~~-g~~~TV~dLl~~L~~~~~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~ 81 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAK--QTSLQLDGVV-PTGTNLNGLVQLLKTNYVKERPDLLVDQTGQTLRPGILVLVNSCDAEVVG 81 (110)
T ss_dssp SCCEEEEESSCGGGTTS--CSEECCCCSC-GGGCCHHHHHHHHTTTTCCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHT
T ss_pred cEEEEEEEecHHHHhCC--eEEEEeCCcC-CCCccHHHHHHHHHHHccccchhhEecCCCcccCCCeEEEECCeeeeccC
Confidence 78999999999999995 3478888210 13459999999999999999999998888 8999999999999999999
Q ss_pred CccCccCCCCEEEEEecCCCC
Q 034276 79 QLDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 79 g~~t~L~dgD~V~i~p~v~GG 99 (99)
|++|+|+|||+|+||||+|||
T Consensus 82 gldt~L~dgD~V~fistlhg~ 102 (110)
T 2k9x_A 82 GMDYVLNDGDTVEFISTLHGG 102 (110)
T ss_dssp SSCCCCCSSCEEEEEECCCCC
T ss_pred CcccCCCCcCEEEEeCCCccc
Confidence 999999999999999999998
No 3
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=99.97 E-value=3.5e-31 Score=171.27 Aligned_cols=96 Identities=36% Similarity=0.776 Sum_probs=85.9
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccc--cccCCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEM--FMKGDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l--~~~~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|+|+|||+||+++|.++++++++|. .+++||++|+++|.++||..++++ |.+++++|++++|+||+++|++++
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~---~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~ 78 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDK---EDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEG 78 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECS---CSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGT
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCC---CCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccC
Confidence 689999999999999433456788861 036899999999999999877778 888899999999999999999999
Q ss_pred CccCccCCCCEEEEEecCCCC
Q 034276 79 QLDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 79 g~~t~L~dgD~V~i~p~v~GG 99 (99)
+++|+|++||+|+||||+|||
T Consensus 79 ~~d~~L~dgDeVa~~Ppv~GG 99 (99)
T 2qjl_A 79 EKDYILEDGDIISFTSTLHGG 99 (99)
T ss_dssp GGGCBCCTTCEEEEEECTTCC
T ss_pred CCCcCcCCCCEEEEECCCCCC
Confidence 999999999999999999998
No 4
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=99.96 E-value=8.5e-30 Score=162.39 Aligned_cols=91 Identities=22% Similarity=0.246 Sum_probs=83.7
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCccccccccc--CCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMK--GDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~--~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|||+|||.||+.+|++. +++. +++||++|++.|.++||.+++.+|++ +|++|++++|+||+++|++++
T Consensus 1 M~v~V~~fa~lr~~~g~~~--~~~~------~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~ 72 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQK--SVSA------SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSG 72 (93)
T ss_dssp -CEEEECCGGGGGGTTTCS--EEEE------CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTT
T ss_pred CEEEEEEeHHHHHHhCCCe--EEec------CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcC
Confidence 9999999999999999754 4664 47899999999999999999899876 789999999999999999999
Q ss_pred CccCccCCCCEEEEEecCCCC
Q 034276 79 QLDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 79 g~~t~L~dgD~V~i~p~v~GG 99 (99)
+.+|+|++||+|+||||+|||
T Consensus 73 ~~~~~L~~gDeV~i~Ppv~GG 93 (93)
T 3dwg_C 73 GLATAIADGDSVTILPAVAGG 93 (93)
T ss_dssp GGGCBCCTTCEEEEEECCTTC
T ss_pred CCCcCCCCCCEEEEECCCCCC
Confidence 999999999999999999998
No 5
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=99.94 E-value=4.8e-27 Score=148.40 Aligned_cols=88 Identities=17% Similarity=0.140 Sum_probs=81.5
Q ss_pred eEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCcc
Q 034276 2 QLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLD 81 (99)
Q Consensus 2 ~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~ 81 (99)
+|+|+|||.||+++|.. +.++++| +++||++|++.|..+||++...+|+++|++|++++|+|||+.++. +
T Consensus 2 ~i~V~~fa~lre~~g~~-~~~~~~~-----~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~----~ 71 (89)
T 3po0_A 2 SMEWKLFADLAEVAGSR-TVRVDVD-----GDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL----G 71 (89)
T ss_dssp EEEEEECHHHHHHHTCS-EEEEECC-----TTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT----T
T ss_pred EEEEEEcHHHHHHhCCC-eEEEECC-----CCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC----C
Confidence 69999999999999964 4678888 689999999999999999888899989999999999999999974 8
Q ss_pred CccCCCCEEEEEecCCCC
Q 034276 82 TTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 82 t~L~dgD~V~i~p~v~GG 99 (99)
|+|++||+|+||||++||
T Consensus 72 ~~l~~gDeV~i~Ppv~GG 89 (89)
T 3po0_A 72 EATAAGDELALFPPVSGG 89 (89)
T ss_dssp SBCCTTCEEEEECCCSCC
T ss_pred cccCCCCEEEEECCCCCC
Confidence 999999999999999998
No 6
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=99.94 E-value=1.4e-26 Score=149.28 Aligned_cols=89 Identities=20% Similarity=0.278 Sum_probs=79.9
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCc
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQL 80 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~ 80 (99)
|+|+|+|||.||+++|+. +.+++++ +++||++|++.|..+||.+++.+|+++|++++.+.|+|||+.|. .
T Consensus 10 ~~v~V~~FA~lre~~g~~-~~~~e~~-----~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~----~ 79 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVD-EEEIELP-----EGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVS----W 79 (98)
T ss_dssp EEEEEEECTHHHHHHSSS-EEEEEEC-----TTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCC----T
T ss_pred EEEEEEEhHHHHHHhCCC-eEEEECC-----CCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECC----C
Confidence 899999999999999974 3578888 68999999999999999999999999999999999999999996 4
Q ss_pred cCccCCCCEEEEEecCCCC
Q 034276 81 DTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 81 ~t~L~dgD~V~i~p~v~GG 99 (99)
+|+|++||+|+||||++||
T Consensus 80 ~~~L~dGDeV~i~ppv~GG 98 (98)
T 1vjk_A 80 DEELKDGDVVGVFPPVSGG 98 (98)
T ss_dssp TCBCCTTCEEEEESCC---
T ss_pred CCCCCCCCEEEEECCCCCC
Confidence 8999999999999999998
No 7
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=99.93 E-value=3.9e-26 Score=143.82 Aligned_cols=88 Identities=18% Similarity=0.268 Sum_probs=81.4
Q ss_pred EEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCccccc-ccccCCccccceEEEEcCccceecCCcc
Q 034276 3 LTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPE-MFMKGDSVRPGVLVLVNDCDWELSGQLD 81 (99)
Q Consensus 3 v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~-l~~~~g~l~~~v~ilvNg~di~~l~g~~ 81 (99)
|+|+|||.||+.+|++. ++++ .+.|+++|++.|..+||.++.. +|+++| +++++.|+|||+.|..+++.+
T Consensus 2 v~V~~fa~lr~~~g~~~---~~~~-----~~~tv~~ll~~l~~~~p~~~~~~l~~~~g-~~~~v~v~vN~~~v~~~~~~~ 72 (90)
T 2g1e_A 2 VTVRYYATLRPITKKKE---ETFN-----GISKISELLERLKVEYGSEFTKQMYDGNN-LFKNVIILVNGNNITSMKGLD 72 (90)
T ss_dssp EEEEECSTHHHHHTCSE---EEES-----SCCBHHHHHHHHHHHSCHHHHHHHCCSSC-STTTCEEEESSSBGGGTCSSS
T ss_pred EEEEEeHHHHHHcCCCE---EEcC-----CCCcHHHHHHHHHHHCcchhhhccccccC-cCcceEEEECCEEccccCCCC
Confidence 89999999999999643 5677 5789999999999999988887 888888 999999999999999999999
Q ss_pred CccCCCCEEEEEecCCCC
Q 034276 82 TTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 82 t~L~dgD~V~i~p~v~GG 99 (99)
|+|++||+|+||||++||
T Consensus 73 ~~l~~gD~V~i~ppv~GG 90 (90)
T 2g1e_A 73 TEIKDDDKIDLFPPVAGG 90 (90)
T ss_dssp CBCCTTCEEEEECCTTCC
T ss_pred cCCCCCCEEEEeCCCCCC
Confidence 999999999999999998
No 8
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=99.93 E-value=5.4e-26 Score=147.05 Aligned_cols=89 Identities=13% Similarity=0.196 Sum_probs=81.4
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccce-------EEEEcCcc
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGV-------LVLVNDCD 73 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v-------~ilvNg~d 73 (99)
|+|+|+|||.||+++|.+ + ++++ +.|++||++.|..+||.++..++ ++|++++++ +|+|||+.
T Consensus 4 m~v~V~~fa~lr~~~g~~-~--~~l~------~~tv~~ll~~L~~~~p~l~~~l~-~~g~l~~~v~~~~~~~~v~VNg~~ 73 (99)
T 2l52_A 4 AEVKVKLFANLREAAGTP-E--LPLS------GEKVIDVLLSLTDKYPALKYVIF-EKGDEKSEILILCGSINILINGNN 73 (99)
T ss_dssp CEEEEEECTHHHHHHSSS-E--EEEE------CSSHHHHHHHHHHHCGGGTTTSB-CSCCTTSSCCCBCSSCEEEETTSC
T ss_pred eEEEEEEeHHHHHHhCCC-e--EEEe------CCcHHHHHHHHHHHChhHHHHHh-cccccccceeccccccEEEECCEE
Confidence 799999999999999964 3 4454 47999999999999999888888 778899999 99999999
Q ss_pred ceecCCccCccCCCCEEEEEecCCCC
Q 034276 74 WELSGQLDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 74 i~~l~g~~t~L~dgD~V~i~p~v~GG 99 (99)
|+++++.+|+|++||+|+||||++||
T Consensus 74 v~~~~~~~~~L~~gD~V~i~ppv~GG 99 (99)
T 2l52_A 74 IRHLEGLETLLKDSDEIGILPPVSGG 99 (99)
T ss_dssp GGGTTSTTSCCCTTEEEEEECCCSCC
T ss_pred ccccCCCCCCCCCCCEEEEECCCCCC
Confidence 99999999999999999999999998
No 9
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=99.84 E-value=2.7e-21 Score=135.66 Aligned_cols=87 Identities=14% Similarity=0.180 Sum_probs=78.8
Q ss_pred EEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccC
Q 034276 3 LTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDT 82 (99)
Q Consensus 3 v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t 82 (99)
.||+|||.||+++|++ +++++ + .||.+|++.|..+||.+...+|++ +.+++++.|+|||+.+..+++.+|
T Consensus 1 ~~V~~FA~Lre~~G~~---~~ev~-----~-~TV~dLl~~L~~~~p~l~~~l~~~-~~l~~~v~VaVNg~~v~~~~~~dt 70 (168)
T 1v8c_A 1 PKVNLYATFRDLTGKS---QLELP-----G-ATVGEVLENLVRAYPALKEELFEG-EGLAERVSVFLEGRDVRYLQGLST 70 (168)
T ss_dssp CEEEECTHHHHHHTCS---EEECC-----C-SBHHHHHHHHHHHCGGGHHHHEET-TEECTTCEEEETTEEGGGTTGGGC
T ss_pred CEEEEeHHHHHHhCCC---eEEEC-----C-CcHHHHHHHHHhhChhhhhhhhcc-cccCCcEEEEECCEECCCcCCCcc
Confidence 3899999999999964 36677 4 899999999999999988888854 459999999999999999999999
Q ss_pred ccCCCCEEEEEecCCCC
Q 034276 83 TLEEKDVVVFISTLHGG 99 (99)
Q Consensus 83 ~L~dgD~V~i~p~v~GG 99 (99)
+|++||+|+||||++||
T Consensus 71 ~L~dGDeVai~PpVsGG 87 (168)
T 1v8c_A 71 PLSPGATLDLFPPVAGG 87 (168)
T ss_dssp BCCTTCEEEEECSCCSE
T ss_pred CCCCCCEEEEECccccc
Confidence 99999999999999998
No 10
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=99.83 E-value=6.4e-21 Score=117.87 Aligned_cols=81 Identities=17% Similarity=0.202 Sum_probs=68.0
Q ss_pred eEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCcc
Q 034276 2 QLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLD 81 (99)
Q Consensus 2 ~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~ 81 (99)
+|+|+|||.||+.+|+. +.+++ + ++.|+++|++.|..+||.+.+.+ . .+ .+.|+||++.+. .+
T Consensus 1 ~v~V~~fa~lr~~~g~~-~~~~~-~-----~~~tv~~ll~~L~~~~p~~~~~l-~-~~----~~~v~vN~~~v~----~~ 63 (81)
T 1fm0_D 1 MIKVLFFAQVRELVGTD-ATEVA-A-----DFPTVEALRQHMAAQSDRWALAL-E-DG----KLLAAVNQTLVS----FD 63 (81)
T ss_dssp CEEEEECHHHHHHHTCS-EEEEC-S-----CCSBHHHHHHHHHTTCHHHHHHH-C-CT----TCEEEETTEECC----TT
T ss_pred CEEEEEeHHHHHHhCCC-eEEEc-C-----CCCCHHHHHHHHHHHChhHHHHh-c-CC----CEEEEECCEECC----CC
Confidence 58999999999999964 34555 5 68899999999999998776544 2 22 468999999884 58
Q ss_pred CccCCCCEEEEEecCCCC
Q 034276 82 TTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 82 t~L~dgD~V~i~p~v~GG 99 (99)
|+|++||+|+||||++||
T Consensus 64 ~~l~~gD~V~i~Ppv~GG 81 (81)
T 1fm0_D 64 HPLTDGDEVAFFPPVTGG 81 (81)
T ss_dssp CBCCTTCEEEEECCCCCC
T ss_pred CCCCCCCEEEEeCCCCCC
Confidence 999999999999999998
No 11
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=99.81 E-value=5.2e-20 Score=112.96 Aligned_cols=74 Identities=19% Similarity=0.234 Sum_probs=61.2
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCc
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQL 80 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~ 80 (99)
|+|+|+|||.||+ +. ++++ ++|+++|++.|..+ |++.+. .+.+.|+||++.|. +.
T Consensus 1 M~v~V~~fa~l~~----~~---~e~~------~~tv~~ll~~L~~~-~~l~~~--------l~~~~vavN~~~v~---~~ 55 (74)
T 3rpf_C 1 MMVEVRFFGPIKE----EN---FFIK------ANDLKELRAILQEK-EGLKEW--------LGVCAIALNDHLID---NL 55 (74)
T ss_dssp CEEEEEECTTCCC----CC---EEEE------CSSHHHHHHHHHTC-TTTTTT--------TTTCEEEESSSEEC---CT
T ss_pred CEEEEEEEeecce----eE---EeeC------CCcHHHHHHHHHHC-cCHHHH--------hhccEEEECCEEcC---CC
Confidence 9999999999998 22 4554 68999999999875 544322 25799999999874 57
Q ss_pred cCccCCCCEEEEEecCCCC
Q 034276 81 DTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 81 ~t~L~dgD~V~i~p~v~GG 99 (99)
+|+|++||+|+||||++||
T Consensus 56 ~~~l~~gDeV~i~PpvsGG 74 (74)
T 3rpf_C 56 NTPLKDGDVISLLPPVCGG 74 (74)
T ss_dssp TCCCCTTCEEEEECCBCCC
T ss_pred CcCCCCCCEEEEECCCCCC
Confidence 8999999999999999998
No 12
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=99.80 E-value=9.1e-20 Score=111.80 Aligned_cols=77 Identities=12% Similarity=0.162 Sum_probs=65.5
Q ss_pred EEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccC
Q 034276 3 LTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDT 82 (99)
Q Consensus 3 v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t 82 (99)
|+|+|||.||+.+|.. +.+++++ +++|+.+|++.|..+||... .+ .+.|+|||+.+.. +|
T Consensus 1 i~V~~fa~lr~~~g~~-~~~~~~~-----~~~tv~~ll~~l~~~~p~~~--------~v--~~~v~vNg~~v~~----~~ 60 (77)
T 2q5w_D 1 MKVLYFAEIKDILQKA-QEDIVLE-----QALTVQQFEDLLFERYPQIN--------NK--KFQVAVNEEFVQK----SD 60 (77)
T ss_dssp CEEECCHHHHHHHTCS-EEECCCS-----SCEEHHHHHHHHHHHCGGGT--------TC--CCEEEETTEEECT----TS
T ss_pred CEEEEeHHHHHHhCCC-EEEEECC-----CCCCHHHHHHHHHHHCcchh--------cc--eEEEEECCEECCC----CC
Confidence 6899999999999975 3567777 78999999999999998531 12 3589999998864 69
Q ss_pred ccCCCCEEEEEecCCCC
Q 034276 83 TLEEKDVVVFISTLHGG 99 (99)
Q Consensus 83 ~L~dgD~V~i~p~v~GG 99 (99)
+|++||+|+||||++||
T Consensus 61 ~L~~gD~V~i~ppv~GG 77 (77)
T 2q5w_D 61 FIQPNDTVALIPPVSGG 77 (77)
T ss_dssp EECTTCEEEEECSCCCC
T ss_pred CcCCCCEEEEECCCCCC
Confidence 99999999999999998
No 13
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=99.39 E-value=1.7e-13 Score=82.09 Aligned_cols=57 Identities=12% Similarity=0.238 Sum_probs=49.6
Q ss_pred EEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCCCC
Q 034276 23 VDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 23 vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~GG 99 (99)
++++ +++|+.+|++.|.- + .+.+.|.+|++.+...++.+|+|++||+|+||||++||
T Consensus 10 ~~~~-----~~~tv~~ll~~l~~--~-------------~~~v~vavN~~~v~~~~~~~~~L~~gD~v~i~~~V~GG 66 (66)
T 1f0z_A 10 MQCA-----AGQTVHELLEQLDQ--R-------------QAGAALAINQQIVPREQWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_dssp ECCC-----TTCCHHHHHHHHTC--C-------------CSSEEEEETTEEECHHHHTTCCCCTTEEECEEESCCCC
T ss_pred EEcC-----CCCcHHHHHHHcCC--C-------------CCCEEEEECCEECCchhcCCcCCCCCCEEEEEeecccC
Confidence 5677 68999999999831 1 35788999999998888889999999999999999998
No 14
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=99.35 E-value=1.1e-12 Score=78.16 Aligned_cols=52 Identities=29% Similarity=0.390 Sum_probs=45.6
Q ss_pred cchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCCCC
Q 034276 33 KLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 33 ~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~GG 99 (99)
+.|+.+|++.|.- + .+.+.|.+|++-+...++.+|+|++||+|.||||++||
T Consensus 13 ~~tv~~ll~~l~~--~-------------~~~v~vavN~~~v~~~~~~~~~L~dgD~v~i~~~V~GG 64 (64)
T 2cu3_A 13 GKTLKEVLEEMGV--E-------------LKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVALMQGG 64 (64)
T ss_dssp TCCHHHHHHHHTB--C-------------GGGEEEEETTEEEEGGGCCCCCCCTTCEEEEEECCCC-
T ss_pred CCcHHHHHHHcCC--C-------------CCcEEEEECCEECCccccCCcCCCCCCEEEEEeecccC
Confidence 6899999999841 1 35788999999999999999999999999999999998
No 15
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=99.30 E-value=2e-13 Score=84.16 Aligned_cols=67 Identities=19% Similarity=0.287 Sum_probs=54.3
Q ss_pred cchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCC
Q 034276 8 GGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEK 87 (99)
Q Consensus 8 ~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dg 87 (99)
||.+++.++... .+++++ +++||.+|++.|. ++ .+.+.|.|||+-+.. +|+|++|
T Consensus 11 fa~~~e~~~~n~-~~~~~~-----~~~Tv~dLl~~L~--~~-------------~~~v~VavNg~~v~~----~~~L~dG 65 (77)
T 1rws_A 11 MIKVKVIGRNIE-KEIEWR-----EGMKVRDILRAVG--FN-------------TESAIAKVNGKVVLE----DDEVKDG 65 (77)
T ss_dssp CCCCBSTTCCCC-CCCCCC-----SSCCHHHHHHTTT--CS-------------SCSSCEEETTEEECS----SSCCCSS
T ss_pred HHHHHHhcccCC-EEEECC-----CCCcHHHHHHHhC--CC-------------CcCEEEEECCEECCC----CCCcCCC
Confidence 678888888653 457777 6899999999874 11 235679999998864 5999999
Q ss_pred CEEEEEecCCCC
Q 034276 88 DVVVFISTLHGG 99 (99)
Q Consensus 88 D~V~i~p~v~GG 99 (99)
|+|.||||++||
T Consensus 66 D~V~i~ppv~GG 77 (77)
T 1rws_A 66 DFVEVIPVVSGG 77 (77)
T ss_dssp CCCBCSCCCCCC
T ss_pred CEEEEEcccccC
Confidence 999999999998
No 16
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=99.24 E-value=8.2e-12 Score=79.14 Aligned_cols=57 Identities=21% Similarity=0.181 Sum_probs=47.6
Q ss_pred EEeCCCCCCCc-chHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCCCC
Q 034276 23 VDVVPPKGSEK-LIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 23 vev~~~~~~~~-~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~GG 99 (99)
++++ ++ .|+.+||+.|. +. ...+.|.||++-+...+..+|+|++||+|.|||||+||
T Consensus 30 ~el~-----~~~~Tv~dLL~~L~----------~~-----~~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~~~V~GG 87 (87)
T 1tyg_B 30 VKWK-----KDTGTIQDLLASYQ----------LE-----NKIVIVERNKEIIGKERYHEVELCDRDVIEIVHFVGGG 87 (87)
T ss_dssp ECCS-----SSCCBHHHHHHHTT----------CT-----TSCCEEEETTEEECGGGTTTSBCCSSSEEEEEEECCC-
T ss_pred EECC-----CCCCcHHHHHHHhC----------CC-----CCCEEEEECCEECChhhcCCcCCCCCCEEEEEcccccC
Confidence 5666 66 89999999883 11 24788999999998888889999999999999999998
No 17
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=99.12 E-value=1.4e-10 Score=70.17 Aligned_cols=55 Identities=18% Similarity=0.135 Sum_probs=44.8
Q ss_pred EEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCCCC
Q 034276 21 HNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 21 ~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~GG 99 (99)
.+++++ ++.|+.+|++.|.- . ...+.|.+|++-+.. +++|++||+|+||||++||
T Consensus 16 ~~~~~~-----~~~tv~~Ll~~l~~----------~-----~~~v~vavN~~~v~~----~~~L~~gD~V~ii~~V~GG 70 (70)
T 1ryj_A 16 KILESG-----APRRIKDVLGELEI----------P-----IETVVVKKNGQIVID----EEEIFDGDIIEVIRVIYGG 70 (70)
T ss_dssp EEEEES-----SCCBHHHHHHHTTC----------C-----TTTEEEEETTEECCT----TSBCCTTCEEEEEECTTCC
T ss_pred eeEECC-----CCCcHHHHHHHhCC----------C-----CCCEEEEECCEECCC----cccCCCCCEEEEEeccccC
Confidence 357788 67999999998831 1 236789999988754 4699999999999999998
No 18
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=99.09 E-value=1.2e-10 Score=71.48 Aligned_cols=66 Identities=29% Similarity=0.335 Sum_probs=51.2
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCc
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQL 80 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~ 80 (99)
|+|+|+++|. .. .++++| +++|++|||+.|. +..+ .+.|++||+-+..
T Consensus 1 M~v~Vkl~g~------~~--~~~ev~-----~g~Tv~dLL~~Lg----------l~~~-----~VvV~vNG~~v~~---- 48 (74)
T 2l32_A 1 MNVTVEVVGE------ET--SEVAVD-----DDGTYADLVRAVD----------LSPH-----EVTVLVDGRPVPE---- 48 (74)
T ss_dssp CEEEEECSSS------SE--EEEECS-----TTCSHHHHHHTTC----------CCSS-----CCCEECCCCCCCT----
T ss_pred CEEEEEEeCc------cc--eeEEcC-----CCCcHHHHHHHcC----------CCcc-----eEEEEECCEECCH----
Confidence 9999999965 22 357899 7999999999763 1111 4569999998754
Q ss_pred cCccCCCCEEEEEecCCCC
Q 034276 81 DTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 81 ~t~L~dgD~V~i~p~v~GG 99 (99)
+..+ +||.|.|++.++||
T Consensus 49 d~~l-~GD~VeIv~~V~G~ 66 (74)
T 2l32_A 49 DQSV-EVDRVKVLRLIKGG 66 (74)
T ss_dssp TSSS-CCCCEEECSSCSCC
T ss_pred HHCC-CCCEEEEEEeeccc
Confidence 3455 59999999999998
No 19
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=98.74 E-value=7.9e-09 Score=63.12 Aligned_cols=52 Identities=13% Similarity=0.069 Sum_probs=44.0
Q ss_pred cchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCCCC
Q 034276 33 KLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 33 ~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~GG 99 (99)
+.|+.+||+.|. ++ ...+.|.+||+=+.-.+..+|+|++||.|.|||+++||
T Consensus 14 ~~Tl~~LL~~l~--~~-------------~~~vAV~vNg~iVpr~~~~~~~L~dGD~veIv~~VgGG 65 (73)
T 2kl0_A 14 SASVAALMTELD--CT-------------GGHFAVALNYDVVPRGKWDETPVTAGDEIEILTPRQGG 65 (73)
T ss_dssp CSBHHHHHHHTT--CC-------------SSSCEEEESSSEECHHHHTTCBCCTTCEEEEECCCCCC
T ss_pred CCcHHHHHHHcC--CC-------------CCcEEEEECCEECChHHcCcccCCCCCEEEEEccccCC
Confidence 589999999773 11 13678999999888777778999999999999999998
No 20
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=98.65 E-value=1.5e-08 Score=62.67 Aligned_cols=53 Identities=28% Similarity=0.276 Sum_probs=44.1
Q ss_pred cchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCCCC
Q 034276 33 KLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 33 ~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~GG 99 (99)
+.|+.+||+.|. ++. ...+.|.+||+=+.-.+..+|+|++||.|.|||+++||
T Consensus 17 ~~Tl~~LL~~l~--~~~------------~~~vAVavNg~iVpr~~~~~~~L~dGD~IEIv~~VgGG 69 (78)
T 2k5p_A 17 SLNVTELLSALK--VAQ------------AEYVTVELNGEVLEREAFDATTVKDGDAVEFLYFMGGG 69 (78)
T ss_dssp CEEHHHHHHHHT--CSC------------TTTCCEEETTEECCTTHHHHCEECSSBCEEECCCCCCS
T ss_pred CCcHHHHHHHcC--CCC------------CCcEEEEECCEECChHHcCcccCCCCCEEEEEeeecCC
Confidence 689999999884 110 23677999999887777778999999999999999998
No 21
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=98.49 E-value=5e-07 Score=58.04 Aligned_cols=73 Identities=11% Similarity=0.144 Sum_probs=52.2
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHH--hcCcccccccccCCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGT--NLIKERPEMFMKGDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~--~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|+|-|.-.=| +....++++ +++||.|+|+.+.- .+|+ + + + ..+.|.|||+-+.
T Consensus 13 ~~v~v~ya~p~r-----q~~~~~~v~-----~g~TV~daI~~~gi~~~~pe----I-d----l-~~~~V~Vng~~v~--- 69 (97)
T 2hj1_A 13 INIEIAYAFPER-----YYLKSFQVD-----EGITVQTAITQSGILSQFPE----I-D----L-STNKIGIFSRPIK--- 69 (97)
T ss_dssp EEEEEEEEETTE-----EEEEEEEEE-----TTCBHHHHHHHHTHHHHCTT----C-C----T-TTSEEEEEECSCC---
T ss_pred EEEEEEEeCCCC-----CEEEEEEcC-----CCCcHHHHHHHcCCCccCCc----c-c----c-cccEEEEcCEECC---
Confidence 356665554433 233467788 79999999999853 3333 2 1 1 1567999999986
Q ss_pred CccCccCCCCEEEEEecCC
Q 034276 79 QLDTTLEEKDVVVFISTLH 97 (99)
Q Consensus 79 g~~t~L~dgD~V~i~p~v~ 97 (99)
.+|+|++||.|.|+||+-
T Consensus 70 -~d~~L~dGDRVEIyrpl~ 87 (97)
T 2hj1_A 70 -LTDVLKEGDRIEIYRPLL 87 (97)
T ss_dssp -TTCBCCTTCEEEECCCCC
T ss_pred -CCccCCCCCEEEEEeccc
Confidence 689999999999999973
No 22
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=97.73 E-value=8.7e-05 Score=43.79 Aligned_cols=66 Identities=15% Similarity=-0.004 Sum_probs=47.4
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCc
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQL 80 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~ 80 (99)
|+|+|.+.- | + ..++| +++|+.|+++.+...++ +..+.+.|||+-|..
T Consensus 1 m~i~i~~p~------g--~--~~~~~-----~g~T~~dla~~i~~~l~-------------~~~vaa~vNg~lvdl---- 48 (73)
T 2kmm_A 1 MEVMVFTPK------G--E--IKRLP-----QGATALDFAYSLHSDLG-------------DHCIGAKVNHKLVPL---- 48 (73)
T ss_dssp CCEEEECTT------C--C--EEEEC-----TTCBHHHHHHHHCSHHH-------------HTEEEEEETTEECCT----
T ss_pred CeEEEEcCC------C--C--EEEcC-----CCCcHHHHHHHHhhccc-------------cceEEEEECCEEeCC----
Confidence 778887641 3 2 25677 78999999987743111 225667899987754
Q ss_pred cCccCCCCEEEEEecCCC
Q 034276 81 DTTLEEKDVVVFISTLHG 98 (99)
Q Consensus 81 ~t~L~dgD~V~i~p~v~G 98 (99)
+++|++||.|.|++....
T Consensus 49 ~~~L~~~~~Veivt~~~~ 66 (73)
T 2kmm_A 49 SYVLNSGDQVEVLSSKSL 66 (73)
T ss_dssp TCBCCSSSBEEEEECCCC
T ss_pred CcCcCCCCEEEEEECCCC
Confidence 799999999999988653
No 23
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=97.19 E-value=0.0018 Score=37.58 Aligned_cols=74 Identities=12% Similarity=0.196 Sum_probs=48.4
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|+|+...+ + .+.++++ ...||.+|-+.+++... ...-+|+. .|+ .+-+++ .|
T Consensus 1 M~i~vk~~~g------~--~~~i~v~-----~~~tv~~lK~~i~~~~~i~~~~q~L~~-~g~------~L~d~~---tL- 56 (76)
T 3a9j_A 1 MQIFVKTLTG------K--TITLEVE-----PSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDGR---TL- 56 (76)
T ss_dssp CEEEEEETTS------C--EEEEECC-----TTCBHHHHHHHHHHHHCCCGGGEEEEE-TTE------ECCTTC---BT-
T ss_pred CEEEEEcCCC------C--EEEEEEC-----CCCcHHHHHHHHHHHHCcCHHHeEEEE-CCe------ECCCCC---cH-
Confidence 8999998642 2 3467887 57899999999988662 22223332 222 111221 12
Q ss_pred CccCccCCCCEEEEEecCCCC
Q 034276 79 QLDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 79 g~~t~L~dgD~V~i~p~v~GG 99 (99)
.++.+++|+.|.++....||
T Consensus 57 -~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 57 -SDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp -GGGTCCTTCEEEEEECCCCC
T ss_pred -HHcCCCCCCEEEEEEeCCCC
Confidence 35678899999999999998
No 24
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=97.07 E-value=0.002 Score=37.39 Aligned_cols=74 Identities=11% Similarity=0.141 Sum_probs=46.5
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|+|+... |+ .+.++++ ...||.+|-+.+++... ...-+|+.. |+ .+-+++ .|
T Consensus 1 M~i~vk~~~------g~--~~~~~v~-----~~~tv~~lK~~i~~~~~i~~~~q~L~~~-g~------~L~d~~---tL- 56 (76)
T 1ndd_A 1 MLIKVKTLT------GK--EIEIDIE-----PTDKVERIKERVEEKEGIPPQQQRLIYS-GK------QMNDEK---TA- 56 (76)
T ss_dssp CEEEEECTT------SC--EEEEECC-----TTCBHHHHHHHHHHHHCCCGGGEEEEET-TE------ECCTTS---BG-
T ss_pred CEEEEECCC------CC--EEEEEEC-----CCChHHHHHHHHHHHHCcChHHEEEEEC-CE------ECCCCC---cH-
Confidence 889998764 22 3467787 57899999999988652 222233321 22 111221 12
Q ss_pred CccCccCCCCEEEEEecCCCC
Q 034276 79 QLDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 79 g~~t~L~dgD~V~i~p~v~GG 99 (99)
.++.+++|+.|.++....||
T Consensus 57 -~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 57 -ADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp -GGGTCCTTCEEEEEECCC--
T ss_pred -HHcCCCCCCEEEEEEeCCCC
Confidence 25678999999999999998
No 25
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=96.90 E-value=0.0039 Score=37.05 Aligned_cols=74 Identities=9% Similarity=0.143 Sum_probs=46.2
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|+|+... |+ .+.++++ ...||.+|-+.++++.. ..+.+|+. .|+ .+-++. .|
T Consensus 4 m~i~vk~~~------g~--~~~~~v~-----~~~tV~~lK~~i~~~~~ip~~~qrL~~-~g~------~L~d~~---tL- 59 (85)
T 3n3k_B 4 MRIVVKTLM------GR--TIILEVE-----PSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDGR---TL- 59 (85)
T ss_dssp CEEEEECGG------GC--EEEEECC-----TTCBHHHHHHHHHHHHCCCGGGEEEEE-TBE------ECCTTC---BT-
T ss_pred EEEEEEeCC------CC--EEEEEEC-----CCCcHHHHHHHHHHHHCCCHHHEEEEE-CCe------ECCCCC---CH-
Confidence 788887653 22 3567887 57899999999988762 22223332 222 121221 22
Q ss_pred CccCccCCCCEEEEEecCCCC
Q 034276 79 QLDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 79 g~~t~L~dgD~V~i~p~v~GG 99 (99)
.++.+++||.|.++...-||
T Consensus 60 -~~~~i~~~~~i~l~~rl~GG 79 (85)
T 3n3k_B 60 -SDYNIHNHSALYLLLKLRGG 79 (85)
T ss_dssp -TTTTCCTTCEEEEEECCC--
T ss_pred -HHCCCCCCCEEEEEEeccCC
Confidence 25678999999999988876
No 26
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=96.84 E-value=0.0036 Score=37.12 Aligned_cols=74 Identities=12% Similarity=0.187 Sum_probs=47.2
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|+|+...+ + .+.++++ ...||.+|-+.+++... ..+.+|+. .|+ ++-++. .|
T Consensus 4 m~i~vk~~~g------~--~~~~~v~-----~~~tV~~lK~~i~~~~~i~~~~qrL~~-~g~------~L~d~~---tL- 59 (85)
T 3mtn_B 4 MQIFVKTLTG------K--TITLEVE-----PSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDGR---TL- 59 (85)
T ss_dssp EEEEEECTTS------C--EEEEEEC-----TTCBHHHHHHHHHHHHCCCGGGCEEEE-TTE------ECCTTS---BT-
T ss_pred EEEEEEcCCC------C--EEEEEEC-----CCCCHHHHHHHHHHHHCcChHHEEEEE-CCE------ECCCCC---CH-
Confidence 6788877532 2 3567888 57899999999988763 22223332 222 111221 12
Q ss_pred CccCccCCCCEEEEEecCCCC
Q 034276 79 QLDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 79 g~~t~L~dgD~V~i~p~v~GG 99 (99)
.++.+++|+.|.++...-||
T Consensus 60 -~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 60 -SDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp -GGGTCCTTCEEEEECCCCCC
T ss_pred -HHcCCCCCCEEEEEEECcCC
Confidence 24578999999999988876
No 27
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=96.59 E-value=0.0023 Score=39.16 Aligned_cols=51 Identities=8% Similarity=0.043 Sum_probs=37.7
Q ss_pred EEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEec
Q 034276 23 VDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIST 95 (99)
Q Consensus 23 vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~ 95 (99)
+++| .|+|+.|+...+.. ++.+. .+-..|||+-+. ++|+|++||.|.|+.+
T Consensus 18 ~~lp-----~GaT~~D~A~~Ih~---~lg~~----------~v~AkVNG~~v~----L~~~L~~gd~VeIit~ 68 (78)
T 3hvz_A 18 ISLP-----IGSTVIDFAYAIHS---AVGNR----------MIGAKVDGRIVP----IDYKVKTGEIIDVLTT 68 (78)
T ss_dssp EEEE-----TTCBHHHHHHHHCH---HHHHT----------EEEEEETTEEEC----TTCBCCTTCBEEEEEC
T ss_pred EEec-----CCCCHHHHHHHhhh---hhhcc----------eEEEEECCEEcC----CCcccCCCCEEEEEcc
Confidence 5677 79999998877733 22222 234677998875 4799999999999875
No 28
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=96.55 E-value=0.0092 Score=36.44 Aligned_cols=74 Identities=11% Similarity=0.158 Sum_probs=47.3
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|+|+...+ + .+.++++ ...||.+|-+.+++... ...-+|+. .|+ +|-++.. |
T Consensus 2 m~i~vk~~~g------~--~~~~~v~-----~~~TV~~LK~~i~~~~gip~~~qrL~~-~G~------~L~d~~t---L- 57 (96)
T 3k9o_B 2 MQIFVKTLTG------K--TITLEVE-----PSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDGRT---L- 57 (96)
T ss_dssp CEEEEEETTC------C--EEEEECC-----TTCBHHHHHHHHHHHHCCCGGGEEEEE-TTE------ECCTTSB---T-
T ss_pred cEEEEEeCCC------C--EEEEEEC-----CCCCHHHHHHHHHhhhCCChhHEEEEE-CCE------ECCCCCc---H-
Confidence 8899987642 2 3567887 57899999999988763 22223332 222 1222222 2
Q ss_pred CccCccCCCCEEEEEecCCCC
Q 034276 79 QLDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 79 g~~t~L~dgD~V~i~p~v~GG 99 (99)
.++-+++|+.|.++..+-||
T Consensus 58 -~~~~i~~~~~i~l~~r~~gG 77 (96)
T 3k9o_B 58 -SDYNIQKESTLHLVLRLRGY 77 (96)
T ss_dssp -GGGTCCTTCEEEEEECCCC-
T ss_pred -HHcCCCCCCEEEEEEEcCCC
Confidence 24678999999999888776
No 29
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=96.52 E-value=0.0072 Score=36.16 Aligned_cols=74 Identities=11% Similarity=0.144 Sum_probs=47.7
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|+|+... |+ .+.++++ ...||.+|-+.+++... ....+|+. .|+ .|-+++. |
T Consensus 13 m~i~vk~~~------g~--~~~~~v~-----~~~tV~~lK~~i~~~~gip~~~qrL~~-~G~------~L~d~~t---L- 68 (88)
T 3dbh_I 13 MLIKVKTLT------GK--EIEIDIE-----PTDKVERIKERVEEKEGIPPQQQRLIY-SGK------QMNDEKT---A- 68 (88)
T ss_dssp EEEEEECTT------SC--EEEEEEC-----TTCBHHHHHHHHHHHHCCCGGGCCEEE-TTE------ECCTTSB---G-
T ss_pred EEEEEEcCC------CC--EEEEEEC-----CCCCHHHHHHHHHHHHCcCHHHEEEEE-CCe------ECCCCCc---H-
Confidence 677777543 32 3567887 57899999999988763 22223332 222 1222222 2
Q ss_pred CccCccCCCCEEEEEecCCCC
Q 034276 79 QLDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 79 g~~t~L~dgD~V~i~p~v~GG 99 (99)
.++.+++|+.|.++-.+-||
T Consensus 69 -~~~~i~~~~~i~l~~rl~GG 88 (88)
T 3dbh_I 69 -ADYKILGGSVLHLVLRLRGG 88 (88)
T ss_dssp -GGGTCCTTCEEEECCCCCCC
T ss_pred -HHcCCCCCCEEEEEEeCCCC
Confidence 25678999999999999988
No 30
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=96.46 E-value=0.014 Score=35.98 Aligned_cols=74 Identities=12% Similarity=0.206 Sum_probs=47.1
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|+|+...+ + ...++++ ...||.+|-+.+++... ...-+|+. .|+ .|-+++. |
T Consensus 1 M~I~Vk~~~g------~--~~~~~v~-----~~~TV~~LK~~I~~~~gi~~~~qrL~~-~Gk------~L~D~~t---L- 56 (98)
T 1yx5_B 1 MQIFVKTLTG------K--TITLEVE-----PSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDGRT---L- 56 (98)
T ss_dssp CEEEEEETTS------C--EEEEECC-----TTCBHHHHHHHHHHHTCCCGGGEEEEE-TTE------ECCTTSB---T-
T ss_pred CEEEEEeCCC------C--EEEEEEC-----CCCcHHHHHHHHHHHHCcChhhEEEEE-CCE------ECCCCCC---H-
Confidence 8999998643 2 3467787 57899999999988663 22223332 222 1112211 2
Q ss_pred CccCccCCCCEEEEEecCCCC
Q 034276 79 QLDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 79 g~~t~L~dgD~V~i~p~v~GG 99 (99)
.++.+++|+.|.++....||
T Consensus 57 -~~~gi~~g~~i~l~~~~~gG 76 (98)
T 1yx5_B 57 -SDYNIQKESTLHLVLRLRGG 76 (98)
T ss_dssp -GGGTCCTTCEEEEEECCCCC
T ss_pred -HHcCCCCCCEEEEEEeCCCC
Confidence 24578899999999888776
No 31
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=96.41 E-value=0.012 Score=36.52 Aligned_cols=74 Identities=12% Similarity=0.181 Sum_probs=48.5
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|+|+... |+ .+.++++ ...||.+|-+.++++.. ....+|+. .|+ +|-+++. |
T Consensus 23 m~I~Vk~~~------g~--~~~l~v~-----~~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk------~L~D~~t---L- 78 (98)
T 4hcn_B 23 MQIFVKTLT------GK--TITLEVE-----SSDTIDNVKSKIQDKEGIPPDQQRLIF-AGK------QLEDGRT---L- 78 (98)
T ss_dssp CEEEEEETT------CC--EEEEECC-----TTCBHHHHHHHHHHHHCCCGGGCEEEE-TTE------ECCTTCB---S-
T ss_pred EEEEEEeCC------CC--EEEEEEC-----CCCcHHHHHHHHHHHhCCChhHEEEEE-CCE------ECCCCCc---H-
Confidence 788888753 32 3567887 57899999999988763 22333332 222 1222222 2
Q ss_pred CccCccCCCCEEEEEecCCCC
Q 034276 79 QLDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 79 g~~t~L~dgD~V~i~p~v~GG 99 (99)
.++.+++|+.|.++-.+-||
T Consensus 79 -~~~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 79 -SDYNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp -GGGTCCTTEEEEEECBCSCC
T ss_pred -HHCCCCCCCEEEEEEecCCC
Confidence 25678999999999999887
No 32
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=96.34 E-value=0.016 Score=35.20 Aligned_cols=74 Identities=11% Similarity=0.148 Sum_probs=46.2
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|+|+... |+ ...++++ ...||.+|-+.+++... ....+|+. .|+ +|-|+.. |
T Consensus 1 M~I~Vk~~~------g~--~~~l~v~-----~~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk------~L~D~~t---L- 56 (88)
T 4fbj_B 1 MLIKVKTLT------GK--EIEIDIE-----PTDKVERIKERVEEKEGIPPQQQRLIY-SGK------QMNDEKT---A- 56 (88)
T ss_dssp CEEEEEETT------CC--EEEEECC-----TTCBHHHHHHHHHHHHCCCGGGCEEEE-TTE------ECCTTSB---T-
T ss_pred CEEEEEcCC------CC--EEEEEEC-----CCCCHHHHHHHHHHHHCcChhHEEEEE-CCe------ECCCCCc---H-
Confidence 889998764 32 3567887 57899999999987653 22223332 222 1222222 2
Q ss_pred CccCccCCCCEEEEEecCCCC
Q 034276 79 QLDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 79 g~~t~L~dgD~V~i~p~v~GG 99 (99)
.++.+++|+.|.++-..-||
T Consensus 57 -~~~~i~~g~~l~l~~rl~Gg 76 (88)
T 4fbj_B 57 -ADYKILGGSVLHLVLALRGG 76 (88)
T ss_dssp -TTTTCCTTCEEEEECBCC--
T ss_pred -HHcCCCCCCEEEEEEECCCC
Confidence 25688999999999887776
No 33
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.20 E-value=0.013 Score=35.02 Aligned_cols=74 Identities=9% Similarity=0.049 Sum_probs=46.5
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|+|+... | +.+.++++ ...||.+|-+.+++... ....+|+. .|+ .+-+++. |
T Consensus 8 m~i~Vk~~~------g--~~~~~~v~-----~~~tV~~lK~~i~~~~gi~~~~qrL~~-~Gk------~L~d~~t---L- 63 (87)
T 1wh3_A 8 IQVFVKNPD------G--GSYAYAIN-----PNSFILGLKQQIEDQQGLPKKQQQLEF-QGQ------VLQDWLG---L- 63 (87)
T ss_dssp EEEEEEETT------T--EEEEEEEC-----SSSBHHHHHHHHHHHTCCCTTTEEEEE-TTE------ECCSSSB---H-
T ss_pred EEEEEEcCC------C--CEEEEEeC-----CCChHHHHHHHHHHHhCCChHHEEEEE-CCE------EccCCCC---H-
Confidence 677777643 3 23567888 57899999999988762 22223322 122 1112211 1
Q ss_pred CccCccCCCCEEEEEecCCCC
Q 034276 79 QLDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 79 g~~t~L~dgD~V~i~p~v~GG 99 (99)
.++.+++|+.|.++....||
T Consensus 64 -~~~~i~~g~~i~l~~~~~GG 83 (87)
T 1wh3_A 64 -GIYGIQDSDTLILSKKKGSG 83 (87)
T ss_dssp -HHHTCCTTEEEEEEECSCCC
T ss_pred -HHCCCCCCCEEEEEEeccCC
Confidence 24578899999999998887
No 34
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=96.18 E-value=0.018 Score=34.96 Aligned_cols=74 Identities=14% Similarity=0.226 Sum_probs=43.0
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|.|+-..+ + ...++++ ...||.+|-+.+++.. |...-+|+.. |+ +|-|++ .|
T Consensus 10 ~~i~v~~~~G------~--~~~l~v~-----~~~TV~~LK~~I~~~~gip~~~qrL~~~-Gk------~L~D~~---tL- 65 (88)
T 1sif_A 10 LQLFIKTLTG------K--TFTVEME-----PSDTIENLKAKIQDKEGIPPDQQRLIFA-GK------QLEDGR---TL- 65 (88)
T ss_dssp CEEEEEETTS------C--EEEEECC-----TTSBHHHHHHHHHHHHCCCGGGCEEEET-TE------ECCTTS---BS-
T ss_pred eEEEEEeCCC------C--EEEEEEC-----CCChHHHHHHHHHHHHCcChhhEEEEEC-CE------ECCCCC---cH-
Confidence 6777776554 2 3467787 5789999999998866 2223333322 22 122221 12
Q ss_pred CccCccCCCCEEEEEecCCCC
Q 034276 79 QLDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 79 g~~t~L~dgD~V~i~p~v~GG 99 (99)
.++.+++|+.|.++...-||
T Consensus 66 -~~~gi~~g~~i~l~~r~~GG 85 (88)
T 1sif_A 66 -SDYNIQKESTLHLVLRLRGG 85 (88)
T ss_dssp -GGGTCCTTCEEEEEC-----
T ss_pred -HHcCCCCCCEEEEEEeCCCC
Confidence 24678999999999888887
No 35
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=95.84 E-value=0.027 Score=35.81 Aligned_cols=74 Identities=11% Similarity=0.170 Sum_probs=47.0
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|+|+... |+ .+.++++ ...||.+|-+.++++.. ..+.+|+. .|+ +|-+++ .|
T Consensus 36 m~I~Vk~~~------G~--~~~l~v~-----~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk------~L~D~~---tL- 91 (111)
T 3vdz_A 36 MQIFVKTLT------GK--TITLEVE-----PSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDGR---TL- 91 (111)
T ss_dssp EEEEEECSS------SC--EEEEEEC-----TTCBHHHHHHHHHHHHCCCGGGEEEEE-TTE------ECCTTS---BT-
T ss_pred EEEEEEeCC------CC--EEEEEeC-----CCCCHHHHHHHHHHHhCCChHHEEEEE-CCE------ECCCCC---cH-
Confidence 677777643 32 3567887 57899999999988763 22333332 222 122222 22
Q ss_pred CccCccCCCCEEEEEecCCCC
Q 034276 79 QLDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 79 g~~t~L~dgD~V~i~p~v~GG 99 (99)
.++.+++|+.|.++-.+-||
T Consensus 92 -~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 92 -SDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp -TTTTCCTTCEEEEEECCCC-
T ss_pred -HHCCCCCCCEEEEEEecCCC
Confidence 24678999999999999887
No 36
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=95.73 E-value=0.034 Score=35.21 Aligned_cols=74 Identities=11% Similarity=0.170 Sum_probs=45.5
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|+|+... |+ .+.++++ ...||.+|-+.+++... ....+|+. .|+ .|-+++ .|
T Consensus 36 m~I~Vk~~~------g~--~~~l~v~-----~~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk------~L~D~~---tL- 91 (111)
T 2ojr_A 36 MQIFVKTLT------GK--TITLEVE-----PSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDGR---TL- 91 (111)
T ss_dssp EEEEEECSS------SC--EEEEEEC-----TTCBHHHHHHHHHHHHCCCTTTEEEEE-TTE------ECCSSC---BT-
T ss_pred EEEEEEcCC------CC--EEEEEeC-----CCCCHHHHHHHHHHHHCcCcccEEEEE-CCE------ECCCCC---cH-
Confidence 567777542 32 3467787 57899999999988663 22223322 222 121221 22
Q ss_pred CccCccCCCCEEEEEecCCCC
Q 034276 79 QLDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 79 g~~t~L~dgD~V~i~p~v~GG 99 (99)
.++.+++|+.|.++....||
T Consensus 92 -~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 92 -SDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp -TTTTCCTTCEEEEEECCCC-
T ss_pred -HHcCCCCCCEEEEEEeCCCC
Confidence 24678899999999999998
No 37
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=95.70 E-value=0.023 Score=34.91 Aligned_cols=72 Identities=15% Similarity=0.201 Sum_probs=46.4
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|+|+. |+ ...++++ ...||.+|-+.+++... ..+.+|+.. |+ .|-+++. |
T Consensus 20 m~I~Vk~--------g~--~~~l~v~-----~~~TV~~LK~~I~~~~gip~~~qrLi~~-Gk------~L~D~~t---L- 73 (93)
T 2l7r_A 20 MQLFVRA--------QE--LHTFEVT-----GQETVAQIKAHVASLEGIAPEDQVVLLA-GA------PLEDEAT---L- 73 (93)
T ss_dssp CEEEEES--------SS--EEEEECC-----SSCBHHHHHHHHHHHHTCCGGGCEEEET-TE------ECCTTSB---H-
T ss_pred EEEEEEC--------CC--EEEEEeC-----CCCcHHHHHHHHHHHhCcChhHEEEEEC-CE------ECCCCCc---H-
Confidence 6788875 43 3467887 57899999999987653 222233322 22 1212221 1
Q ss_pred CccCccCCCCEEEEEecCCCC
Q 034276 79 QLDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 79 g~~t~L~dgD~V~i~p~v~GG 99 (99)
.++.+++|+.|.++..+-||
T Consensus 74 -~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 74 -GQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp -HHHTCCSSCEEEEECCCCCC
T ss_pred -HHCCCCCCCEEEEEEecCCC
Confidence 24578999999999999998
No 38
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.46 E-value=0.07 Score=33.21 Aligned_cols=79 Identities=15% Similarity=0.142 Sum_probs=47.3
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|+|+...+- .-+ +.+.++++ ...||.+|-+.+.+... ..+.+|+.. |+ +|-|+. ..|
T Consensus 8 m~I~Vk~~~~~--~~~--~~~~i~v~-----~~~TV~~LK~~I~~~~gip~~~qrL~~~-gk------~L~D~~--~tL- 68 (102)
T 1v5o_A 8 MLITVYCVRRD--LTE--VTFSLQVN-----PDFELSNFRVLCELESGVPAEEAQIVYM-EQ------LLTDDH--CSL- 68 (102)
T ss_dssp EEEEEEECCCC--CCC--CEEEEEEC-----TTCBHHHHHHHHHHHTCCCGGGBCEEET-TE------EECCSS--SBH-
T ss_pred EEEEEEECCCC--cCc--eEEEEEcC-----CCCCHHHHHHHHHHHHCcChHHeEEEEC-CE------ECCCCc--ccH-
Confidence 67888875221 122 34568888 57899999999988763 223334322 21 222221 111
Q ss_pred CccCccCCCCEEEEEecCCCC
Q 034276 79 QLDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 79 g~~t~L~dgD~V~i~p~v~GG 99 (99)
.++.+++|+.|.+.-...||
T Consensus 69 -~~ygI~~g~~l~l~~~~~gg 88 (102)
T 1v5o_A 69 -GSYGLKDGDMVVLLQKDNVG 88 (102)
T ss_dssp -HHHTCCTTEEEEECBCCCCC
T ss_pred -HHCCCCCCCEEEEEECCCCC
Confidence 24578899999998777665
No 39
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=95.43 E-value=0.049 Score=31.88 Aligned_cols=73 Identities=12% Similarity=0.029 Sum_probs=44.9
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|.|+...+ + .+.++++ ...||.+|-+.+++.. |...-+|+. .|+ .+-+++. |
T Consensus 5 m~i~Vk~~~g------~--~~~~~v~-----~~~tV~~lK~~i~~~~gip~~~qrL~~-~G~------~L~d~~t---L- 60 (79)
T 3phx_B 5 LSILVRNNKG------R--SSTYEVR-----LTQTVAHLKQQVSGLEGVQDDLFWLTF-EGK------PLEDQLP---L- 60 (79)
T ss_dssp EEEEEECTTS------C--EEEEEEC-----TTSBHHHHHHHHHHHHTCCGGGEEEEE-TTE------ECCTTSB---G-
T ss_pred EEEEEEeCCC------C--EEEEEEC-----CcChHHHHHHHHHhhcCCCHHHEEEEE-CCE------ECCCCCc---H-
Confidence 6677765433 2 3567888 5789999999998765 322333332 222 1112222 2
Q ss_pred CccCccCCCCEEEEEecCCC
Q 034276 79 QLDTTLEEKDVVVFISTLHG 98 (99)
Q Consensus 79 g~~t~L~dgD~V~i~p~v~G 98 (99)
.++.+++|+.|.++-.+-|
T Consensus 61 -~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 61 -GEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp -GGGTCCTTCEEEEEECCBC
T ss_pred -HHCCCCCCCEEEEEEecCC
Confidence 3567899999999877665
No 40
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=95.36 E-value=0.038 Score=33.40 Aligned_cols=74 Identities=12% Similarity=0.027 Sum_probs=43.0
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|+|+... |+ ...++++ ...||.+|-+.+++... ..+.+|+.. |+. +-+++. |
T Consensus 5 m~I~Vk~~~------g~--~~~~~v~-----~~~TV~~LK~~I~~~~gip~~~qrL~~~-Gk~------L~D~~t---L- 60 (88)
T 2hj8_A 5 LSILVRNNK------GR--SSTYEVR-----LTQTVAHLKQQVSGLEGVQDDLFWLTFE-GKP------LEDQLP---L- 60 (88)
T ss_dssp EEEEEEETT------SC--EEEEEEE-----SSSBHHHHHHHHHHHTCSCTTTEEEESS-SSC------CCTTSB---H-
T ss_pred EEEEEECCC------CC--EEEEEEC-----CCCcHHHHHHHHHHHhCCChhHEEEEEC-CEE------CCCCCc---H-
Confidence 577777754 32 3457777 56899999999988752 223333322 221 112222 1
Q ss_pred CccCccCCCCEEEEEecCCCC
Q 034276 79 QLDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 79 g~~t~L~dgD~V~i~p~v~GG 99 (99)
.++.+++|+.|.++-...||
T Consensus 61 -~~~~I~~g~~i~l~~~~~gg 80 (88)
T 2hj8_A 61 -GEYGLKPLSTVFMNLRLRGG 80 (88)
T ss_dssp -HHHHCSTTCEEEEEEC----
T ss_pred -HHcCCCCCCEEEEEEEcCCC
Confidence 24578899999998887776
No 41
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.27 E-value=0.053 Score=32.47 Aligned_cols=75 Identities=20% Similarity=0.240 Sum_probs=46.4
Q ss_pred CeEEEEEcchHhhhcCCeeEEEE-EeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceec
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNV-DVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELS 77 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~v-ev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l 77 (99)
|+|+|+... |+ +.+.+ +++ ...||.+|-+.+++... ....+|+. .|+ .+-+++.+
T Consensus 8 m~i~Vk~~~------g~-~~~~l~~v~-----~~~tV~~lK~~i~~~~gip~~~qrL~~-~gk------~L~d~~tL--- 65 (89)
T 1wy8_A 8 MWIQVRTID------GS-KTCTIEDVS-----RKATIEELRERVWALFDVRPECQRLFY-RGK------QLENGYTL--- 65 (89)
T ss_dssp EEEEEEETT------CS-CEEEEEEEC-----TTCBHHHHHHHHHHHSCCCTTTEEEEE-TTE------ECCSSSBH---
T ss_pred EEEEEEECC------CC-ceEEEEecC-----CCCCHHHHHHHHHHHHCcChhhEEEEE-CCe------ECCCCCCH---
Confidence 677887753 31 23567 488 57899999999988762 22223332 222 11122211
Q ss_pred CCccCccCCCCEEEEEecCCCC
Q 034276 78 GQLDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 78 ~g~~t~L~dgD~V~i~p~v~GG 99 (99)
.++.+++|+.|.++....||
T Consensus 66 --~~~~i~~g~~i~l~~~~~gG 85 (89)
T 1wy8_A 66 --FDYDVGLNDIIQLLVRPDSG 85 (89)
T ss_dssp --HHHTCCTTCEEEEEECCCCS
T ss_pred --HHCCCCCCCEEEEEEeCCCC
Confidence 24578999999999888876
No 42
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=95.20 E-value=0.02 Score=33.67 Aligned_cols=64 Identities=16% Similarity=0.060 Sum_probs=38.8
Q ss_pred EEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecC-CccCccCCCCEEEEEecCCC
Q 034276 20 VHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSG-QLDTTLEEKDVVVFISTLHG 98 (99)
Q Consensus 20 ~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~-g~~t~L~dgD~V~i~p~v~G 98 (99)
.+.+++. ...||.+|-+.++++..-... ..-++.+|+..+.-. =.++.+++||.|.++-..-|
T Consensus 15 ~~~~~v~-----~~~tv~~lk~~i~~~~gi~~~-----------~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~G 78 (79)
T 2uyz_B 15 EIHFKVK-----MTTHLKKLKESYCQRQGVPMN-----------SLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 78 (79)
T ss_dssp EEEEEEE-----TTSCTHHHHHHHHHHHTCCGG-----------GEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC
T ss_pred EEEEEEC-----CCChHHHHHHHHHHHHCCCcc-----------cEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 3567777 568999999999886521110 111233443322110 12457889999999999988
Q ss_pred C
Q 034276 99 G 99 (99)
Q Consensus 99 G 99 (99)
|
T Consensus 79 G 79 (79)
T 2uyz_B 79 G 79 (79)
T ss_dssp -
T ss_pred C
Confidence 7
No 43
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=95.20 E-value=0.066 Score=36.55 Aligned_cols=74 Identities=12% Similarity=0.181 Sum_probs=47.7
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|+|+... |+ .+.++++ ...||.+|=+.+.++.. ..+.+|+. .|+ .|-+++. |
T Consensus 1 MqI~Vk~~~------Gk--~~~l~v~-----~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk------~L~D~~t---L- 56 (169)
T 3l0w_B 1 MQIFVKTLT------GK--TITLEVE-----SSDTIDNVKSKIQDKEGIPPDQQRLIF-AGK------QLEDGRT---L- 56 (169)
T ss_dssp CEEEEEETT------SC--EEEEECC-----TTCBHHHHHHHHHHHHCCCTTTEEEEE-TTE------ECCTTSB---G-
T ss_pred CEEEEEeCC------CC--EEEEEeC-----CCCCHHHHHHHHHHHHCcCHHHEEEEE-CCc------cccCcCc---H-
Confidence 899998754 32 4568888 57899999999987653 22333332 222 1222222 2
Q ss_pred CccCccCCCCEEEEEecCCCC
Q 034276 79 QLDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 79 g~~t~L~dgD~V~i~p~v~GG 99 (99)
.++.+++|+.|.++-...||
T Consensus 57 -~~y~I~~gstI~Lvlrl~GG 76 (169)
T 3l0w_B 57 -SDYNIQKESTLHLVLRLRGG 76 (169)
T ss_dssp -GGGTCCTTCEEEEEECCCC-
T ss_pred -HHcCCCCCCEEEEEEEeccc
Confidence 24678999999999888776
No 44
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=94.91 E-value=0.035 Score=34.32 Aligned_cols=75 Identities=16% Similarity=0.054 Sum_probs=45.2
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecC-C
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSG-Q 79 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~-g 79 (99)
|+|+|+.. -|+ .+.+++. ...||.+|-+.++++..-... ..-++.+|+..+.-. =
T Consensus 22 m~I~Vk~~------~g~--~~~l~v~-----~~~tv~~lK~~i~~~~gip~~-----------~qrLif~Gk~L~d~~tl 77 (97)
T 1wyw_B 22 IKLKVIGQ------DSS--EIHFKVK-----MTTHLKKLKESYCQRQGVPMN-----------SLRFLFEGQRIADNHTP 77 (97)
T ss_dssp EEEEEECT------TCC--EEEEEEE-----TTSCTHHHHHHHHHHHTCCGG-----------GEEEEETTEECCTTCCH
T ss_pred EEEEEEeC------CCC--EEEEEEC-----CCCcHHHHHHHHHHHHCCChh-----------hEEEEECCeEcCCCCCH
Confidence 45666543 343 3467777 568999999999886531110 112233443322110 1
Q ss_pred ccCccCCCCEEEEEecCCCC
Q 034276 80 LDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 80 ~~t~L~dgD~V~i~p~v~GG 99 (99)
.++-+++||.|.++-..-||
T Consensus 78 ~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 78 KELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp HHHTCCTTCEEEEEESSSCC
T ss_pred HHCCCCCCCEEEEEEecCCC
Confidence 24578999999999999988
No 45
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=94.79 E-value=0.11 Score=31.76 Aligned_cols=69 Identities=19% Similarity=0.275 Sum_probs=43.5
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHh-----cCcccccccccCCccccceEEEEcCccce
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTN-----LIKERPEMFMKGDSVRPGVLVLVNDCDWE 75 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~-----~~~~~~~l~~~~g~l~~~v~ilvNg~di~ 75 (99)
|+|+|+... |+ ...++++ ...||.+|=+.+++. .|..+-+|+. .|+ +|-+++.
T Consensus 1 M~I~Vk~~~------g~--~~~~~v~-----~~~TV~~LK~~I~~~~~~~gip~~~qrLi~-~Gk------~L~D~~t-- 58 (95)
T 1uel_A 1 MQVTLKTLQ------QQ--TFKIDID-----PEETVKALKEKIESEKGKDAFPVAGQKLIY-AGK------ILNDDTA-- 58 (95)
T ss_dssp CEEEEEETT------CC--EEEEECC-----TTSBHHHHHHHHHHHHCTTTCCTTTEEEEE-TTE------ECCTTSB--
T ss_pred CEEEEEeCC------CC--EEEEEEC-----CCCHHHHHHHHHHhhcccCCCChhhEEEEE-CCE------ECCCcCc--
Confidence 899998763 32 3467787 578999999999986 3433334433 232 2223222
Q ss_pred ecCCccCccCCCCEEEEEe
Q 034276 76 LSGQLDTTLEEKDVVVFIS 94 (99)
Q Consensus 76 ~l~g~~t~L~dgD~V~i~p 94 (99)
| .++.+++|+.|.++-
T Consensus 59 -L--~~ygI~~g~~i~l~~ 74 (95)
T 1uel_A 59 -L--KEYKIDEKNFVVVMV 74 (95)
T ss_dssp -G--GGGTCCSSSEEEEEE
T ss_pred -H--HHCCCCCCCEEEEEE
Confidence 2 256788999997653
No 46
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=94.67 E-value=0.074 Score=37.28 Aligned_cols=74 Identities=9% Similarity=0.150 Sum_probs=47.5
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|.|+... |+ .+.++++ ...||.+|-+.+++.. |....+|+. .|+ +|-+++. |
T Consensus 106 MqI~VKtl~------Gk--t~~l~V~-----~s~TV~~LK~kI~~~~gIp~~~QrLi~-~Gk------~L~D~~t---L- 161 (189)
T 3q3f_A 106 GQIFVKTLT------GK--TITLEVE-----PSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDGRT---L- 161 (189)
T ss_dssp EEEEEECTT------SC--EEEEEEC-----TTCBHHHHHHHHHHHHCCCGGGCCEEE-TTE------ECCTTCB---G-
T ss_pred eeeeeecCC------CC--EEEEEeC-----CCCcHHHHHHHHHhccCCCHHHEEEEE-CCE------ECCCCCC---H-
Confidence 677777642 32 4578888 5789999999998765 333333432 222 1222222 2
Q ss_pred CccCccCCCCEEEEEecCCCC
Q 034276 79 QLDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 79 g~~t~L~dgD~V~i~p~v~GG 99 (99)
.++.+++|+.|.++-.+-||
T Consensus 162 -~dygI~~gstI~LvlrlrGG 181 (189)
T 3q3f_A 162 -SDYNIQKESTLHLVLRLRGG 181 (189)
T ss_dssp -GGGTCCTTCEEEECCCCCCC
T ss_pred -HHCCCCCCCEEEEEEEcCCC
Confidence 25678999999999888876
No 47
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=94.62 E-value=0.29 Score=30.18 Aligned_cols=64 Identities=9% Similarity=0.082 Sum_probs=43.7
Q ss_pred EEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecC-CccCccCCCCEEEEEecCCC
Q 034276 20 VHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSG-QLDTTLEEKDVVVFISTLHG 98 (99)
Q Consensus 20 ~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~-g~~t~L~dgD~V~i~p~v~G 98 (99)
++.+.+. ...+++.|.++.+++..-. ...+-++-+|+.+.--+ =.+.-+++||.|.++...-|
T Consensus 17 ~v~~~vk-----~~t~l~kl~~~y~~~~gi~-----------~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~g 80 (91)
T 2io0_B 17 VVQFKIK-----RHTPLSKLMKAYCERQGLS-----------MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 80 (91)
T ss_dssp EEEEEEE-----TTSCTHHHHHHHHHHTTCC-----------STTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCC
T ss_pred EEEEEEC-----CCChHHHHHHHHHHHhCCC-----------cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 4567787 5789999999999865321 12444555777664332 12336889999999997777
Q ss_pred C
Q 034276 99 G 99 (99)
Q Consensus 99 G 99 (99)
|
T Consensus 81 g 81 (91)
T 2io0_B 81 G 81 (91)
T ss_dssp C
T ss_pred C
Confidence 6
No 48
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=94.54 E-value=0.23 Score=30.75 Aligned_cols=64 Identities=9% Similarity=0.082 Sum_probs=43.7
Q ss_pred EEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecC-CccCccCCCCEEEEEecCCC
Q 034276 20 VHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSG-QLDTTLEEKDVVVFISTLHG 98 (99)
Q Consensus 20 ~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~-g~~t~L~dgD~V~i~p~v~G 98 (99)
++.+.+. ...+++.|.++.+++..-.. ..+-++-+|+.++.-+ =.+.-+++||.|.++...-|
T Consensus 19 ~i~~~v~-----~~t~l~kl~~~y~~~~gi~~-----------~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~G 82 (94)
T 2io1_B 19 VVQFKIK-----RHTPLSKLMKAYCERQGLSM-----------RQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 82 (94)
T ss_dssp EEEEEEE-----TTSCTHHHHHHHHHHHTCCG-----------GGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEE
T ss_pred EEEEEEC-----CCCHHHHHHHHHHHHhCCCc-----------ccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 4567787 57899999999998654211 2444555676654432 22347899999999987766
Q ss_pred C
Q 034276 99 G 99 (99)
Q Consensus 99 G 99 (99)
|
T Consensus 83 G 83 (94)
T 2io1_B 83 G 83 (94)
T ss_dssp S
T ss_pred C
Confidence 5
No 49
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=94.32 E-value=0.17 Score=32.67 Aligned_cols=74 Identities=11% Similarity=0.172 Sum_probs=45.9
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|+|+... |+ .+.++++ ...||.+|-+.+++... .....|+.. |. ++-++.. |
T Consensus 1 M~i~vk~~~------g~--~~~~~v~-----~~~tv~~lK~~i~~~~gip~~~q~L~~~-g~------~L~d~~t---L- 56 (152)
T 3b08_A 1 MQIFVKTLT------GK--TITLEVE-----PSDTIENVKAKIQDKEGIPPDQQRLIFA-GK------QLEDGRT---L- 56 (152)
T ss_dssp CEEEEEETT------SC--EEEEECC-----TTCBHHHHHHHHHHHHCCCGGGEEEEET-TE------ECCTTSB---T-
T ss_pred CEEEEEeCC------CC--EEEEEEC-----CCCCHHHHHHHHHHHHCcChHHeEEEEC-Ce------ECcCccc---H-
Confidence 889998764 32 3467887 57899999999988763 222233322 22 1212222 2
Q ss_pred CccCccCCCCEEEEEecCCCC
Q 034276 79 QLDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 79 g~~t~L~dgD~V~i~p~v~GG 99 (99)
.++.+++|+.|.++....||
T Consensus 57 -~~~~i~~~~~l~l~~~~~~~ 76 (152)
T 3b08_A 57 -SDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp -GGGTCCTTCEEEEEECCTTC
T ss_pred -HHhccCCCCeeEEEeecccc
Confidence 24578899999888766553
No 50
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=94.21 E-value=0.12 Score=31.12 Aligned_cols=69 Identities=7% Similarity=0.100 Sum_probs=42.3
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|+|+... |+ .+.++++ ...||.+|-+.+++... ..+.+|+. .|+ .+-++.. |
T Consensus 18 m~i~Vk~~~------g~--~~~l~v~-----~~~TV~~LK~~I~~~~gip~~~qrL~~-~Gk------~L~D~~t---L- 73 (91)
T 3v6c_B 18 MQIFVNTLT------GT--HITLEVE-----PSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDGRT---L- 73 (91)
T ss_dssp EEEEEECTT------SC--EEEEEEC-----TTCBHHHHHHHHHHHHCCCGGGCEEEE-TTE------ECCTTCB---T-
T ss_pred EEEEEEeCC------CC--EEEEEEC-----CCCCHHHHHHHHHhhhCCChhhEEEEE-CCe------ECCCcCc---H-
Confidence 677777643 32 3567887 57899999999988753 22333433 222 1222222 2
Q ss_pred CccCccCCCCEEEEEe
Q 034276 79 QLDTTLEEKDVVVFIS 94 (99)
Q Consensus 79 g~~t~L~dgD~V~i~p 94 (99)
.++-+++|+.|.++-
T Consensus 74 -~~~gi~~g~~i~l~~ 88 (91)
T 3v6c_B 74 -SDYNIQKESTLHLVL 88 (91)
T ss_dssp -GGGTCCTTCEEEEEC
T ss_pred -HHCCCCCCCEEEEEE
Confidence 256789999998864
No 51
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=94.18 E-value=0.35 Score=29.77 Aligned_cols=64 Identities=9% Similarity=0.082 Sum_probs=42.1
Q ss_pred EEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecC-CccCccCCCCEEEEEecCCC
Q 034276 20 VHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSG-QLDTTLEEKDVVVFISTLHG 98 (99)
Q Consensus 20 ~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~-g~~t~L~dgD~V~i~p~v~G 98 (99)
++.+.+. ...+++.|.++.+++..-. ...+-++-+|+.+..-+ =.+.-+++||.|.++...-|
T Consensus 29 ~i~~~v~-----~~t~l~kl~~~y~~~~gi~-----------~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~G 92 (93)
T 2d07_B 29 VVQFKIK-----RHTPLSKLMKAYCERQGLS-----------MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 92 (93)
T ss_dssp EEEEEEE-----TTSCHHHHHHHHHHHHTCC-----------GGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC--
T ss_pred EEEEEEc-----cCCHHHHHHHHHHHHhCCC-----------ccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 4567777 5689999999999865421 12444666777665432 12346899999999998887
Q ss_pred C
Q 034276 99 G 99 (99)
Q Consensus 99 G 99 (99)
|
T Consensus 93 G 93 (93)
T 2d07_B 93 G 93 (93)
T ss_dssp -
T ss_pred C
Confidence 7
No 52
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=93.97 E-value=0.18 Score=32.55 Aligned_cols=63 Identities=10% Similarity=0.200 Sum_probs=39.9
Q ss_pred EEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCC
Q 034276 20 VHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLH 97 (99)
Q Consensus 20 ~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~ 97 (99)
...++++ ...||.+|-+.++++. |....+++. .|. .|-|++. | .++.+++|+.|.++...-
T Consensus 88 ~~~~~v~-----~~~tv~~lK~~i~~~~gi~~~~qrL~~-~g~------~L~d~~t---L--~~~~i~~~~~i~l~~r~~ 150 (152)
T 3b08_A 88 TITLEVE-----PSDTIENVKAKIQDKEGIPPDQQRLIF-AGK------QLEDGRT---L--SDYNIQKESTLHLVLRLR 150 (152)
T ss_dssp EEEEEEC-----TTCBHHHHHHHHHHHHCCCGGGEEEEE-TTE------ECCTTSB---T--GGGTCCTTCEEEEEECCC
T ss_pred EEEEEeC-----CCCcHHHHHHHHHHHhCcChhhEEEEE-CCE------ECCCCCC---H--HHcCCCCCCEEEEEEecC
Confidence 3567787 5789999999998865 322333332 222 1212222 2 245789999999999998
Q ss_pred CC
Q 034276 98 GG 99 (99)
Q Consensus 98 GG 99 (99)
||
T Consensus 151 GG 152 (152)
T 3b08_A 151 GG 152 (152)
T ss_dssp C-
T ss_pred CC
Confidence 88
No 53
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=93.95 E-value=0.2 Score=29.41 Aligned_cols=69 Identities=16% Similarity=0.222 Sum_probs=41.9
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHh-----cCcccccccccCCccccceEEEEcCccce
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTN-----LIKERPEMFMKGDSVRPGVLVLVNDCDWE 75 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~-----~~~~~~~l~~~~g~l~~~v~ilvNg~di~ 75 (99)
|+|+|+... |+ .+.++++ ...||.+|-+.++++ .|..+-+|+. .|+ +|-|++.
T Consensus 6 m~i~vk~~~------g~--~~~~~v~-----~~~TV~~lK~~i~~~~~~~gip~~~qrLi~-~Gk------~L~D~~t-- 63 (85)
T 2wyq_A 6 VTITLKTLQ------QQ--TFKIRME-----PDETVKVLKEKIEAEKGRDAFPVAGQKLIY-AGK------ILSDDVP-- 63 (85)
T ss_dssp EEEEEEETT------SC--EEEEEEC-----TTSBHHHHHHHHHHHHCTTTCCGGGEEEEE-TTE------ECCTTSB--
T ss_pred EEEEEEECC------CC--EEEEEEC-----CCCCHHHHHHHHHhhccccCCCHHHeEEEE-CCE------ECcCCCC--
Confidence 567777653 32 3467887 578999999999986 3333334433 232 2223322
Q ss_pred ecCCccCccCCCCEEEEEe
Q 034276 76 LSGQLDTTLEEKDVVVFIS 94 (99)
Q Consensus 76 ~l~g~~t~L~dgD~V~i~p 94 (99)
| .++.+++|+.|.++-
T Consensus 64 -L--~~~~i~~g~~i~l~~ 79 (85)
T 2wyq_A 64 -I--RDYRIDEKNFVVVMV 79 (85)
T ss_dssp -G--GGGCCCTTSEEEEEE
T ss_pred -H--HHcCCCCCCEEEEEE
Confidence 2 246788999988763
No 54
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=93.74 E-value=0.23 Score=33.25 Aligned_cols=74 Identities=12% Similarity=0.180 Sum_probs=45.5
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|+|+... | +.+.++++ ...||.+|=+.+.+... ..+.+|+.. |. .+-+++ .|
T Consensus 21 m~i~Vk~~~------g--~~~~l~v~-----~~~tV~~lK~~I~~~~gip~~~QrL~~~-g~------~L~d~~---tL- 76 (172)
T 3u30_A 21 MQIFVKTLT------G--KTITLEVE-----PSDTIENVKAKIQDKEGIPPDQQRLIFA-GK------QLEDGR---TL- 76 (172)
T ss_dssp EEEEEEETT------T--EEEEEEEC-----TTCBHHHHHHHHHHHHCCCGGGEEEEET-TE------ECCTTC---BT-
T ss_pred EEEEEEeCC------C--CEEEEEEC-----CCCcHHHHHHHHHHHHCcChHHEEEEEC-Cc------cccccC---CH-
Confidence 678887643 3 23578888 57899999999987653 323334322 22 122222 22
Q ss_pred CccCccCCCCEEEEEecCCCC
Q 034276 79 QLDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 79 g~~t~L~dgD~V~i~p~v~GG 99 (99)
.++.+++|+.|.++-...||
T Consensus 77 -~~~~i~~~~~l~l~~~~~gg 96 (172)
T 3u30_A 77 -SDYNIQKESTLHLVLRLRGG 96 (172)
T ss_dssp -GGGTCCTTCEEEEEECCCCC
T ss_pred -hHcCCcccceeeeeeccccc
Confidence 25678899999888776654
No 55
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=93.69 E-value=0.3 Score=27.97 Aligned_cols=60 Identities=8% Similarity=0.100 Sum_probs=36.3
Q ss_pred EEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecC
Q 034276 20 VHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTL 96 (99)
Q Consensus 20 ~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v 96 (99)
.+.++++ ...||.+|-+.+++... ...-+|+. .|+ .+-|++. | .++.+++|+.|.++..-
T Consensus 15 ~~~~~v~-----~~~tV~~LK~~i~~~~~i~~~~qrL~~-~gk------~L~d~~t---L--~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 15 KWEVNVA-----PESTVLQFKEAINKANGIPVANQRLIY-SGK------ILKDDQT---V--ESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEC-----TTCBHHHHHHHHHHHHCCCGGGEEEEE-TTE------ECCTTSB---T--GGGTCCTTCEEEEEECC
T ss_pred EEEEEEC-----CCCcHHHHHHHHHHHhCCCHHHEEEEE-CCe------EcCCCCC---H--HHcCCCCCCEEEEEEcC
Confidence 3568888 57899999999987652 22223332 222 1222222 2 24578899999887643
No 56
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.65 E-value=0.15 Score=31.91 Aligned_cols=68 Identities=15% Similarity=0.176 Sum_probs=41.5
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|+|+...+ + ...++++ ...||.+|=+.+.+... ..+.+|+. .|+ +|-|++ .|
T Consensus 2 m~I~Vk~~~g------~--~~~l~v~-----~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk------~L~D~~---tL- 57 (106)
T 3m62_B 2 VSLTFKNFKK------E--KVPLDLE-----PSNTILETKTKLAQSISCEESQIKLIY-SGK------VLQDSK---TV- 57 (106)
T ss_dssp -CEEEECTTC------C--EEEECCC-----TTSBHHHHHHHHHHTTTSCGGGCEEEE-TTE------ECCTTS---BT-
T ss_pred EEEEEEeCCC------C--EEEEEEC-----CCCcHHHHHHHHHHHHCCChhhEEEEE-CCE------ECCCcC---CH-
Confidence 7888886533 2 3567777 57899999999988763 22223332 232 222222 22
Q ss_pred CccCccCCCCEEEEE
Q 034276 79 QLDTTLEEKDVVVFI 93 (99)
Q Consensus 79 g~~t~L~dgD~V~i~ 93 (99)
.++-+++|+.|.++
T Consensus 58 -~~~~i~~g~~i~lv 71 (106)
T 3m62_B 58 -SECGLKDGDQVVFM 71 (106)
T ss_dssp -TTTTCCTTCEEEEE
T ss_pred -HHcCCCCCCEEEEE
Confidence 25678999999887
No 57
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=93.65 E-value=0.13 Score=31.23 Aligned_cols=76 Identities=11% Similarity=0.128 Sum_probs=46.2
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC----cccccccccCCccccceEEEEcCcccee
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI----KERPEMFMKGDSVRPGVLVLVNDCDWEL 76 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~----~~~~~l~~~~g~l~~~v~ilvNg~di~~ 76 (99)
|+|+|+...+ ....++++++ ...||.+|=+.+.+..| ..+.+|+.. |+ +|-+++.+
T Consensus 8 m~i~Vk~~~~------~~~~~~v~v~-----~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~-Gk------~L~D~~tL-- 67 (93)
T 1wgd_A 8 VTLLVKSPNQ------RHRDLELSGD-----RGWSVGHLKAHLSRVYPERPRPEDQRLIYS-GK------LLLDHQCL-- 67 (93)
T ss_dssp CEEEEECSSS------SCCCEEEECC-----TTSCHHHHHHHHHHHSTTCCCTTTCEEEET-TE------ECCSSSCH--
T ss_pred EEEEEEeCCC------CeEEEEEecC-----CCCcHHHHHHHHHHHhcCCCChHHeEEEEC-CE------ECcCcCCH--
Confidence 6788886643 2123567776 57899999999998652 223333322 22 22233222
Q ss_pred cCCccC--ccCCCCEEEEEecCCCC
Q 034276 77 SGQLDT--TLEEKDVVVFISTLHGG 99 (99)
Q Consensus 77 l~g~~t--~L~dgD~V~i~p~v~GG 99 (99)
.++ .+++|+.|.++-..-||
T Consensus 68 ---~~~~~~i~~~~~i~lv~~~~gg 89 (93)
T 1wgd_A 68 ---RDLLPKQEKRHVLHLVCNVKSG 89 (93)
T ss_dssp ---HHHSCSSSCSEEEEEECCCCCC
T ss_pred ---HHHhcCCCCCCEEEEEeCCCCC
Confidence 134 67899999988776665
No 58
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=93.22 E-value=0.53 Score=29.98 Aligned_cols=64 Identities=14% Similarity=0.138 Sum_probs=41.5
Q ss_pred EEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecC-CccCccCCCCEEEEEecCCC
Q 034276 20 VHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSG-QLDTTLEEKDVVVFISTLHG 98 (99)
Q Consensus 20 ~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~-g~~t~L~dgD~V~i~p~v~G 98 (99)
++.+.+. ...+++.|.++.+++..-. ...+-++-+|+.+.--+ =.+.-+++||.|.++...-|
T Consensus 42 ~i~fkIk-----~tt~l~kL~~ay~ek~gi~-----------~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~G 105 (106)
T 2eke_C 42 EIFFKIK-----KTTPLRRLMEAFAKRQGKE-----------MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 105 (106)
T ss_dssp EEEEEEE-----TTSCTHHHHHHHHHHHTCC-----------GGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC--
T ss_pred EEEEEeC-----CCCHHHHHHHHHHHHhCCC-----------cccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeeccc
Confidence 4567777 5689999999999865421 12444555777665332 12336889999999998877
Q ss_pred C
Q 034276 99 G 99 (99)
Q Consensus 99 G 99 (99)
|
T Consensus 106 G 106 (106)
T 2eke_C 106 G 106 (106)
T ss_dssp -
T ss_pred C
Confidence 6
No 59
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=93.12 E-value=0.29 Score=29.65 Aligned_cols=69 Identities=10% Similarity=0.010 Sum_probs=40.9
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCc
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQL 80 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~ 80 (99)
|+|+|+... | +.+.++++ ...||.+|-+.+.+..+...+-+| .|+ +|-++ + ..| .
T Consensus 8 m~i~Vk~~~------g--~~~~~~v~-----~~~TV~~LK~~i~~~~~~~qrLi~--~Gk------~L~D~-~-~tL--~ 62 (95)
T 1wia_A 8 INVRLKFLN------D--TEELAVAR-----PEDTVGTLKSKYFPGQESQMKLIY--QGR------LLQDP-A-RTL--S 62 (95)
T ss_dssp EEEEEEETT------T--EEEEEEEC-----SSSBHHHHHHHHSSSTTTTCEEEE--TTE------ECCCS-S-CBT--T
T ss_pred EEEEEEeCC------C--CEEEEEEC-----CCCcHHHHHHHHHhhCcCcEEEEE--CCE------EccCC-c-CCH--H
Confidence 677777542 3 23567888 578999999999876622222222 122 22222 0 112 2
Q ss_pred cCccCCCCEEEEEe
Q 034276 81 DTTLEEKDVVVFIS 94 (99)
Q Consensus 81 ~t~L~dgD~V~i~p 94 (99)
++.+++|+.|.++-
T Consensus 63 ~y~i~~g~~i~l~~ 76 (95)
T 1wia_A 63 SLNITNNCVIHCHR 76 (95)
T ss_dssp TTTCCTTEEEEEEC
T ss_pred HcCCCCCCEEEEEE
Confidence 56788999998874
No 60
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=93.11 E-value=0.017 Score=37.64 Aligned_cols=74 Identities=12% Similarity=0.184 Sum_probs=0.0
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|+|+... |. .+.++++ ...||.+|-+.+.+.. |.....|+. .|. +|-++. .|
T Consensus 1 M~I~Vk~~~------G~--~~~l~v~-----~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk------~L~D~~---tL- 56 (128)
T 3u5e_m 1 MQIFVKTLT------GK--TITLEVE-----SSDTIDNVKSKIQDKEGIPPDQQRLIF-AGK------QLEDGR---TL- 56 (128)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCC------CC--EEEEEeC-----CCCCHHHHHHHHHHHhCcChHHEEEEE-CCE------ECCCCC---ch-
Confidence 788887643 32 3456777 5689999999988765 222333332 222 122222 22
Q ss_pred CccCccCCCCEEEEEecCCCC
Q 034276 79 QLDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 79 g~~t~L~dgD~V~i~p~v~GG 99 (99)
.++.+++|+.|.++...-||
T Consensus 57 -~~~~I~~gsti~l~~rl~GG 76 (128)
T 3u5e_m 57 -SDYNIQKESTLHLVLRLRGG 76 (128)
T ss_dssp ---------------------
T ss_pred -hhhccCCCCEEEEEEEcCCC
Confidence 24678999999998877776
No 61
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=93.02 E-value=0.36 Score=30.36 Aligned_cols=48 Identities=31% Similarity=0.355 Sum_probs=33.3
Q ss_pred CcchHHHHHHHHHHhcCcccccccccCCccccceEEEE-------cCccceecCCccCccCCCCEEEEEecC
Q 034276 32 EKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLV-------NDCDWELSGQLDTTLEEKDVVVFISTL 96 (99)
Q Consensus 32 ~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilv-------Ng~di~~l~g~~t~L~dgD~V~i~p~v 96 (99)
.++||.|+-..+-...... +..-+| |++.+ |++++|+|||.|.|+..-
T Consensus 34 ~GsTv~Dfa~~IH~di~~~-------------fkyA~VwG~saK~~~qrV----gldh~L~d~DVV~Iv~~~ 88 (93)
T 2eki_A 34 SRTTVEDFCMKIHKNLIKE-------------FKYALVWGLSVKHNPQKV----GKDHTLEDEDVIQIVKKS 88 (93)
T ss_dssp TSCCHHHHHHHHCTTCTTT-------------EEEEEEBSTTSSSSSEEE----CSSCCCCSSEEECEEECC
T ss_pred CCCCHHHHHHHHHHHHHhh-------------ccEEEEecccccCCCEEC----CCCcEecCCCEEEEEeCC
Confidence 7999999998885433221 112233 45444 789999999999998763
No 62
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=92.95 E-value=0.51 Score=29.83 Aligned_cols=64 Identities=8% Similarity=0.050 Sum_probs=41.5
Q ss_pred EEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecC-CccCccCCCCEEEEEecCCC
Q 034276 20 VHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSG-QLDTTLEEKDVVVFISTLHG 98 (99)
Q Consensus 20 ~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~-g~~t~L~dgD~V~i~p~v~G 98 (99)
++.+.+. ...+++.|.++.+++..-... .+-++.+|+.+..-+ =.+.-+++||.|.++...-|
T Consensus 36 ~i~~kVk-----~~t~l~kL~~~y~ek~gi~~~-----------~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~G 99 (104)
T 1wz0_A 36 VVQFKIK-----RHTPLSKLMKAYCERQGLSMR-----------QIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTS 99 (104)
T ss_dssp EEEEEEC-----TTSCHHHHHHHHHHHHTCCTT-----------TSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCC
T ss_pred EEEEEEc-----CCChHHHHHHHHHHHhCCCcc-----------eEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 4567887 578999999999987642211 222333454443221 12346899999999988777
Q ss_pred C
Q 034276 99 G 99 (99)
Q Consensus 99 G 99 (99)
|
T Consensus 100 G 100 (104)
T 1wz0_A 100 G 100 (104)
T ss_dssp C
T ss_pred C
Confidence 6
No 63
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.80 E-value=0.25 Score=28.60 Aligned_cols=70 Identities=17% Similarity=0.203 Sum_probs=41.6
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|+|+... |+ .+.++++ ...||.+|-+.+++... ...-+|+.. |+ .+-+++. |
T Consensus 8 m~i~vk~~~------g~--~~~~~v~-----~~~tV~~LK~~i~~~~~i~~~~qrL~~~-gk------~L~d~~t---L- 63 (81)
T 2dzi_A 8 MQLTVKALQ------GR--ECSLQVP-----EDELVSTLKQLVSEKLNVPVRQQRLLFK-GK------ALADGKR---L- 63 (81)
T ss_dssp EEEEEEETT------SC--EEEEEEC-----SSCBHHHHHHHHHHHTCCCTTTCEEEET-TE------ECCTTSB---G-
T ss_pred EEEEEEeCC------CC--EEEEEEC-----CCCcHHHHHHHHHHHHCcCHHHEEEEEC-Ce------ECCCCCc---H-
Confidence 677887543 32 3467888 57899999999988663 222233322 22 1112222 2
Q ss_pred CccCccCCCCEEEEEec
Q 034276 79 QLDTTLEEKDVVVFIST 95 (99)
Q Consensus 79 g~~t~L~dgD~V~i~p~ 95 (99)
.++.+++|+.|.++-.
T Consensus 64 -~~~~i~~g~~i~l~~~ 79 (81)
T 2dzi_A 64 -SDYSIGPNSKLNLVVK 79 (81)
T ss_dssp -GGGTCCSSBCCEEECC
T ss_pred -HHcCCCCCCEEEEEEe
Confidence 2457789998877643
No 64
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=92.59 E-value=0.31 Score=32.04 Aligned_cols=63 Identities=14% Similarity=0.019 Sum_probs=38.7
Q ss_pred EEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCC
Q 034276 20 VHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLH 97 (99)
Q Consensus 20 ~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~ 97 (99)
.+.++++ ...||.+|=+.+.++. |...-+|+. .|+ +|-+++. | .++-+++|+.|.++-..-
T Consensus 93 ~~~~~v~-----~~~tV~~lK~~i~~~~gip~~~q~L~~-~G~------~L~d~~t---L--~~y~i~~g~~l~l~~rl~ 155 (159)
T 3rt3_B 93 SSTYEVR-----LTQTVAHLKQQVSGLEGVQDDLFWLTF-EGK------PLEDQLP---L--GEYGLKPLSTVFMNLRLR 155 (159)
T ss_dssp EEEEEEC-----TTSBHHHHHHHHHHHHTCCGGGEEEEE-TTE------ECCTTSB---G--GGGTCCTTCEEEEEECCC
T ss_pred EEEEEeC-----CCCCHHHHHHHHHHHHCCCHHHEEEEE-CCe------ecCCCCC---H--HHcCCCCCCEEEEEEecC
Confidence 4578888 5789999999998765 332323332 222 2222222 2 356799999999997777
Q ss_pred CC
Q 034276 98 GG 99 (99)
Q Consensus 98 GG 99 (99)
||
T Consensus 156 GG 157 (159)
T 3rt3_B 156 GG 157 (159)
T ss_dssp --
T ss_pred CC
Confidence 76
No 65
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=92.56 E-value=0.15 Score=30.97 Aligned_cols=73 Identities=11% Similarity=0.173 Sum_probs=44.6
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|+|+.. |+ .+.++++ ...||.+|-+.+.+... ..+.+|+. .|+ +|-+++. |
T Consensus 18 m~i~Vk~~-------g~--~~~~~v~-----~~~TV~~LK~~I~~~~gip~~~qrL~~-~Gk------~L~D~~t---L- 72 (96)
T 1wx8_A 18 IRVSVKTP-------QD--CHEFFLA-----ENSNVRRFKKQISKYLHCNADRLVLIF-TGK------ILRDQDI---L- 72 (96)
T ss_dssp EEEEEECS-------SS--EEEEEEE-----TTCCHHHHHHHHHHHTCSCTTTBCCEE-TTE------ECCTTSC---H-
T ss_pred EEEEEEEC-------Ce--EEEEEEC-----CCCCHHHHHHHHHHHhCCCHHHEEEEE-CCE------ECCCcCC---H-
Confidence 56777664 43 3467777 57899999999988762 22223332 222 1222222 1
Q ss_pred CccCccCCCCEEEEEecCCCC
Q 034276 79 QLDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 79 g~~t~L~dgD~V~i~p~v~GG 99 (99)
.++.+++|+.|.++-...||
T Consensus 73 -~~~gi~~g~~i~l~~~~~~g 92 (96)
T 1wx8_A 73 -SQRGILDGSTVHVVVRSHSG 92 (96)
T ss_dssp -HHHTCCTTEEEECCBCCSSC
T ss_pred -HHCCCCCCCEEEEEEeCCCC
Confidence 24578899999988777765
No 66
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=92.53 E-value=0.17 Score=30.43 Aligned_cols=69 Identities=12% Similarity=0.092 Sum_probs=41.6
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|+|+...+ + ..+++++ ...||.+|=+.+.+.. |..+.+|+.. |+. ++-|++.+
T Consensus 11 ~~i~vk~l~g------~--~~~l~v~-----~~~TV~~LK~~I~~~~gip~~~QrLi~~-Gk~-----lL~D~~tL---- 67 (84)
T 2kk8_A 11 MKFLVENLNG------S--SFELEVD-----YRDTLLVVKQKIERSQHIPVSKQTLIVD-GIV-----ILREDLTV---- 67 (84)
T ss_dssp EEEEEEETTS------C--EEEEEEC-----TTSBHHHHHHHHHHHHTCCGGGEEEEET-TEE-----CCCSSSBH----
T ss_pred eEEEEEecCC------c--EEEEEEC-----CCChHHHHHHHHHHHHCcChHHEEEEEC-CEE-----ecCCcCCH----
Confidence 7888888754 2 3467888 5789999999998875 3333334322 221 02222222
Q ss_pred CccCccCCCCEEEEE
Q 034276 79 QLDTTLEEKDVVVFI 93 (99)
Q Consensus 79 g~~t~L~dgD~V~i~ 93 (99)
.++.+++|+.|.++
T Consensus 68 -~~y~I~~gs~i~lv 81 (84)
T 2kk8_A 68 -EQCQIVPTSDIQLE 81 (84)
T ss_dssp -HHHTCCTTSCEEEE
T ss_pred -HHcCCCCCCEEEEE
Confidence 24567889888764
No 67
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=92.49 E-value=0.43 Score=29.87 Aligned_cols=63 Identities=6% Similarity=0.066 Sum_probs=40.8
Q ss_pred EEEEEeCCCCCCC-cchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecC
Q 034276 20 VHNVDVVPPKGSE-KLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTL 96 (99)
Q Consensus 20 ~~~vev~~~~~~~-~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v 96 (99)
.+.++++ . ..||.+|=+.+.+.. |....+|+. .|. ++-+++ .| .++.+++|+.|.++-..
T Consensus 42 ~~~l~v~-----~l~~TV~~LK~~I~~~~gip~~~QrL~~-~Gk------~L~D~~---tL--~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 42 FMEITVQ-----SLSENVGSLKEKIAGEIQIPANKQKLSG-KAG------FLKDNM---SL--AHYNVGAGEILTLSLRE 104 (111)
T ss_dssp CEEEEES-----CSSSBHHHHHHHHHHHTTCCTTTSEEEC-SSS------BCCTTS---BT--TTTTCSSSCEEEEECSS
T ss_pred EEEEEec-----CCCCcHHHHHHHHHHHHCCCHHHeEEEE-CCE------ECCCCC---cH--HHCCCCCCCEEEEEEEc
Confidence 3567887 5 689999999998875 333334433 232 111222 22 35678999999999888
Q ss_pred CCC
Q 034276 97 HGG 99 (99)
Q Consensus 97 ~GG 99 (99)
.||
T Consensus 105 ~GG 107 (111)
T 1we6_A 105 RSG 107 (111)
T ss_dssp CCS
T ss_pred CCC
Confidence 887
No 68
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=92.13 E-value=0.22 Score=31.71 Aligned_cols=82 Identities=18% Similarity=0.122 Sum_probs=45.2
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCC-------ccccceEEEEcCcc
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGD-------SVRPGVLVLVNDCD 73 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g-------~l~~~v~ilvNg~d 73 (99)
|+|+|+- +-|+ +++++|+ ...||.+|=+++.++..-... ...| -+.+..-+.-+|+-
T Consensus 8 M~I~Vk~------l~g~--~~~v~V~-----~~~TV~dLK~~I~~~~~i~~~---~q~g~~~isw~~~w~q~~Li~~Gk~ 71 (105)
T 1v2y_A 8 MTVRVCK------MDGE--VMPVVVV-----QNATVLDLKKAIQRYVQLKQE---REGGVQHISWSYVWRTYHLTSAGEK 71 (105)
T ss_dssp EEEEEEC------SSSC--EEEEEEC-----TTCBHHHHHHHHHHHHHHHHH---HTTCCCCCCHHHHHTTEEEESSSCE
T ss_pred EEEEEEe------cCCC--EEEEEEC-----CCChHHHHHHHHHHHhCCCcc---cccCcceeeeeecceeEEEEeCCcC
Confidence 7788873 3343 4678888 579999999998876521000 0000 00011112223432
Q ss_pred cee--cCCccCccCCCCEEEEEecCCC
Q 034276 74 WEL--SGQLDTTLEEKDVVVFISTLHG 98 (99)
Q Consensus 74 i~~--l~g~~t~L~dgD~V~i~p~v~G 98 (99)
..- -.=.++-+++||.|.|+..+-|
T Consensus 72 L~dD~~tL~dygI~~g~~l~lv~~lr~ 98 (105)
T 1v2y_A 72 LTEDRKKLRDYGIRNRDEVSFIKKLGQ 98 (105)
T ss_dssp ECCSSSBHHHHTCCSSEEEEEEECSCS
T ss_pred ccCCcCCHHHcCCCCCCEEEEEehhcc
Confidence 210 0013568999999999987765
No 69
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=91.97 E-value=0.33 Score=31.47 Aligned_cols=73 Identities=7% Similarity=0.131 Sum_probs=42.6
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|+|+.. |+ .+.++++ ...||.+|-+.+.+... ..+.+|+. .|+ +|-|++. |
T Consensus 33 m~I~Vk~~-------g~--~~~l~v~-----~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk------~L~D~~t---L- 87 (125)
T 1j8c_A 33 IKVTVKTP-------KE--KEEFAVP-----ENSSVQQFKEAISKRFKSQTDQLVLIF-AGK------ILKDQDT---L- 87 (125)
T ss_dssp EEEEEECS-------SC--EEEEEEC-----TTCCHHHHHHHHHHHHCSCSSSEEEEE-TTE------EESTTSC---G-
T ss_pred EEEEEEeC-------Ce--EEEEEEC-----CCCcHHHHHHHHHHHHCcCcceEEEEE-CCE------EcCCCCC---H-
Confidence 56777663 33 3467887 57899999999988653 22333332 222 2223222 2
Q ss_pred CccCccCCCCEEEEEecCCCC
Q 034276 79 QLDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 79 g~~t~L~dgD~V~i~p~v~GG 99 (99)
.++.+++|+.|.++-...||
T Consensus 88 -~dygI~~gstI~lv~~~~gg 107 (125)
T 1j8c_A 88 -IQHGIHDGLTVHLVIKRDPN 107 (125)
T ss_dssp -GGTTCSSSEEEEEEEC----
T ss_pred -HHcCCCCCCEEEEEeccCCC
Confidence 35678899999998776665
No 70
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=91.90 E-value=0.03 Score=37.98 Aligned_cols=74 Identities=12% Similarity=0.190 Sum_probs=0.0
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|.|+... |. .+.++++ ...||.+|-+.+.+.. |.....|+. .|. +|-++.. |
T Consensus 1 MqI~VK~l~------G~--~~~l~V~-----~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk------~L~D~~t---L- 56 (152)
T 3u5c_f 1 MQIFVKTLT------GK--TITLEVE-----SSDTIDNVKSKIQDKEGIPPDQQRLIF-AGK------QLEDGRT---L- 56 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCC------CC--EEEEEEC-----CCCCHHHHHHHHHHHhCCCHHHEEEEE-CCE------EccccCc---H-
Confidence 778777653 22 2456777 5789999999888765 222333332 222 1223222 2
Q ss_pred CccCccCCCCEEEEEecCCCC
Q 034276 79 QLDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 79 g~~t~L~dgD~V~i~p~v~GG 99 (99)
.++-+++|+.|.++..+-||
T Consensus 57 -~dygI~~gstL~Lvlrl~GG 76 (152)
T 3u5c_f 57 -SDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp ---------------------
T ss_pred -HHcCCCCCCEEEEEeeccCC
Confidence 24678899999998888776
No 71
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=91.69 E-value=1.1 Score=25.87 Aligned_cols=58 Identities=7% Similarity=0.024 Sum_probs=38.3
Q ss_pred EEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecC-CccCccCCCCEEEEE
Q 034276 20 VHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSG-QLDTTLEEKDVVVFI 93 (99)
Q Consensus 20 ~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~-g~~t~L~dgD~V~i~ 93 (99)
++.+.+. ...+++.|.++.+++..-. ...+-.+-+|+.+..-+ =.+.-+++||.|.++
T Consensus 13 ~v~~~v~-----~~t~l~kl~~~y~~~~gi~-----------~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 13 VVQFKIK-----RHTPLSKLMKAYCERQGLS-----------MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEEC-----TTSCTHHHHHHHHHHHTCC-----------TTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEEC-----CCChHHHHHHHHHHHhCCC-----------cceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 4578887 5789999999999865321 12344555776664432 123368899999876
No 72
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=90.90 E-value=0.034 Score=32.26 Aligned_cols=73 Identities=15% Similarity=0.175 Sum_probs=43.1
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|.|+...+ . ...++++ ...||.+|-+.+++.. |...-.|+. .|+ .+-++.. |
T Consensus 1 M~i~Vk~~~g------~--~~~~~v~-----~~~tV~~lK~~i~~~~gi~~~~qrL~~-~gk------~L~d~~t---L- 56 (76)
T 3b1l_X 1 MIVFVRFNSS------Y--GFPVEVD-----SDTSILQLKEVVAKQQGVPADQLRVIF-AGK------ELPNHLT---V- 56 (76)
Confidence 7888886432 2 2356676 5689999999888765 222223332 222 1222222 2
Q ss_pred CccCccCCCCEEEEEecCCC
Q 034276 79 QLDTTLEEKDVVVFISTLHG 98 (99)
Q Consensus 79 g~~t~L~dgD~V~i~p~v~G 98 (99)
.++.+++|+.|.++...-|
T Consensus 57 -~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 57 -QNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 2467889999988776544
No 73
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=91.47 E-value=0.54 Score=28.91 Aligned_cols=66 Identities=11% Similarity=0.086 Sum_probs=39.2
Q ss_pred CeEEEEEcchHhhhcCCeeEE-EEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceec
Q 034276 1 MQLTLEFGGGLELLCDSVKVH-NVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELS 77 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~-~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l 77 (99)
|+|+|+.. | + .+ +++++ ...||.+|-+.|.+.. |..+.+|+. .|+ +|-++ .|
T Consensus 8 m~i~Vk~~-------g-~-~~~~l~v~-----~~~TV~~lK~~I~~~tgip~~~QkLi~-~Gk------~L~D~----tL 62 (96)
T 1wgg_A 8 YSVTVKWG-------K-E-KFEGVELN-----TDEPPMVFKAQLFALTGVQPARQKVMV-KGG------TLKDD----DW 62 (96)
T ss_dssp EEEEEEET-------T-E-EEEEEEEE-----SSSCHHHHHHHHHHHTCCCTTTSCCEE-TTE------ECCSS----CC
T ss_pred EEEEEEEC-------C-E-EEEEEEEC-----CCCcHHHHHHHHHHHHCcCHHHeEEEE-CCc------CCCCC----CH
Confidence 56777742 2 2 35 47888 5789999999998766 333434443 232 11122 22
Q ss_pred CCccCccCCCCEEEEE
Q 034276 78 GQLDTTLEEKDVVVFI 93 (99)
Q Consensus 78 ~g~~t~L~dgD~V~i~ 93 (99)
.++.+++|+.|.++
T Consensus 63 --~~~~I~~g~~i~l~ 76 (96)
T 1wgg_A 63 --GNIKMKNGMTVLMM 76 (96)
T ss_dssp --CSCCCCSSCEEECC
T ss_pred --HHCCCCCCCEEEEE
Confidence 24567888888765
No 74
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=91.46 E-value=0.9 Score=27.71 Aligned_cols=73 Identities=14% Similarity=0.145 Sum_probs=44.9
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcC-ccceec
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVND-CDWELS 77 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg-~di~~l 77 (99)
|+|.|+..+ | ..+++++ ...||.+|=+.+.+.. |..+.+|+. .|+ +|-|+ +.+
T Consensus 16 ~~I~Vk~~~------~---~~~l~v~-----~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk------~L~D~~~tL--- 71 (94)
T 2kan_A 16 IHVTVKFPS------K---QFTVEVD-----RTETVSSLKDKIHIVENTPIKRMQLYY-SGI------ELADDYRNL--- 71 (94)
T ss_dssp EEEEEECSS------C---EEEEEEC-----TTCBHHHHHHHHHHHSSSCTTTEEEEE-TTE------EECCTTSBH---
T ss_pred EEEEEEcCC------c---EEEEEEC-----CCCcHHHHHHHHHHHHCcCHHHEEEEE-CCE------ECCCCcccH---
Confidence 566666543 2 2457787 5789999999998865 333333332 222 22222 222
Q ss_pred CCccCccCCCCEEEEEecCCCC
Q 034276 78 GQLDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 78 ~g~~t~L~dgD~V~i~p~v~GG 99 (99)
.++.+++|+.|.++-...||
T Consensus 72 --~~ygI~~gstl~lv~r~~gg 91 (94)
T 2kan_A 72 --NEYGITEFSEIVVFLKSINR 91 (94)
T ss_dssp --HHHTCCTTEEEEEEECCCSS
T ss_pred --HHCCCCCCCEEEEEEeCCCC
Confidence 24578899999998887776
No 75
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=91.44 E-value=0.5 Score=28.11 Aligned_cols=34 Identities=6% Similarity=0.148 Sum_probs=25.0
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL 47 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~ 47 (99)
|+|+|+... |+ .+.++++ ...||.+|-+.+.++.
T Consensus 6 m~i~Vk~~~------g~--~~~~~v~-----~~~tV~~lK~~i~~~~ 39 (90)
T 4dwf_A 6 LEVLVKTLD------SQ--TRTFIVG-----AQMNVKEFKEHIAASV 39 (90)
T ss_dssp EEEEEEETT------CC--EEEEEEE-----TTCBHHHHHHHHHHHH
T ss_pred EEEEEEcCC------CC--EEEEEEC-----CCCCHHHHHHHHHHHh
Confidence 678887753 32 3467777 5789999999998776
No 76
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=91.40 E-value=0.36 Score=29.92 Aligned_cols=73 Identities=7% Similarity=0.118 Sum_probs=43.8
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|+|+...+ + ..++++ ...||.+|-+.+++... ..+.+|+. .|+ +|-|++. |
T Consensus 23 m~I~Vk~~~g-------~--~~l~v~-----~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk------~L~D~~t---L- 77 (100)
T 1yqb_A 23 IKVTVKTPKD-------K--EDFSVT-----DTCTIQQLKEEISQRFKAHPDQLVLIF-AGK------ILKDPDS---L- 77 (100)
T ss_dssp EEEEEECSSC-------E--EEEEEE-----TTCBHHHHHHHHHHHHTCCGGGEEEEE-TTE------ECCTTSB---H-
T ss_pred EEEEEEcCCC-------c--EEEEEC-----CCCcHHHHHHHHHHHHCcChhhEEEEE-CCE------ECCCcCc---H-
Confidence 5777777543 2 256777 56899999999987652 22223332 222 1212221 1
Q ss_pred CccCccCCCCEEEEEecCCCC
Q 034276 79 QLDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 79 g~~t~L~dgD~V~i~p~v~GG 99 (99)
.++.+++|+.|.++-...||
T Consensus 78 -~~ygI~~gstI~l~~r~~~~ 97 (100)
T 1yqb_A 78 -AQCGVRDGLTVHLVIKRQHR 97 (100)
T ss_dssp -HHHTCCTTCEEEEEECCCCS
T ss_pred -HHCCCCCCCEEEEEEcCCCC
Confidence 24578899999998776664
No 77
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=91.29 E-value=0.73 Score=28.11 Aligned_cols=75 Identities=12% Similarity=0.112 Sum_probs=43.8
Q ss_pred eEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCcccc-ceEEEEcCccceecCCc
Q 034276 2 QLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRP-GVLVLVNDCDWELSGQL 80 (99)
Q Consensus 2 ~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~-~v~ilvNg~di~~l~g~ 80 (99)
+||+.| +...++ .+++.+| ...|++.|++.+.+.+.-..... ++..+|= +=.+++.|.++- .
T Consensus 6 ~ITidl----~~y~~~--~~DLRIP-----~~~tvK~Li~~l~ea~~l~~~~~--~~~~irv~NK~~~L~~~~~L----~ 68 (81)
T 2bps_A 6 DITIDL----KHYNGS--VFDLRLS-----DYHPVKKVIDIAWQAQSVSMPPR--EGHWIRVVNKDKVFSGECKL----S 68 (81)
T ss_dssp EEEEEC----TTTTCC--EEEEEEE-----TTSBTTHHHHHHHHHSCCCSCCC--TTCEEEEGGGTEEEETTSBT----G
T ss_pred EEEEEe----eccCCc--eEEEECC-----CchhHHHHHHHHHHHhCCCcCCC--CCCEEEEecCCEEEcCCCEE----e
Confidence 456655 344553 5688899 68999999999999874322111 1111110 111233333331 2
Q ss_pred cCccCCCCEEEEE
Q 034276 81 DTTLEEKDVVVFI 93 (99)
Q Consensus 81 ~t~L~dgD~V~i~ 93 (99)
++++.+||.+.|.
T Consensus 69 d~~ItnGD~Leil 81 (81)
T 2bps_A 69 DCGITNGDRLEIL 81 (81)
T ss_dssp GGTCCTTCEEEEC
T ss_pred eCCcCCCCEEEEC
Confidence 7899999998763
No 78
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=91.23 E-value=0.96 Score=25.95 Aligned_cols=71 Identities=11% Similarity=0.154 Sum_probs=42.5
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEE-eCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceec
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVD-VVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELS 77 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~ve-v~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l 77 (99)
|+|.|+... |+ ..+.++ ++ ...||.+|-+.+++... ....+|+. .|. .+-+++ .|
T Consensus 3 m~i~Vk~~~------g~-~~~~l~~v~-----~~~tv~~lK~~i~~~~gip~~~qrL~~-~g~------~L~d~~---tL 60 (78)
T 2faz_A 3 MWIQVRTMD------GR-QTHTVDSLS-----RLTKVEELRRKIQELFHVEPGLQRLFY-RGK------QMEDGH---TL 60 (78)
T ss_dssp EEEEEEETT------SS-CEEEEEEEC-----TTCBHHHHHHHHHHHHCCCGGGEEEEE-TTE------ECCTTC---BT
T ss_pred EEEEEEECC------CC-EEEEEeccC-----CCCCHHHHHHHHHHHHCcChhhEEEEE-CCE------ECCCCC---CH
Confidence 778888763 32 213677 87 57899999999988653 22223332 222 121222 22
Q ss_pred CCccCccCCCCEEEEEec
Q 034276 78 GQLDTTLEEKDVVVFIST 95 (99)
Q Consensus 78 ~g~~t~L~dgD~V~i~p~ 95 (99)
.++.+++|+.|.++..
T Consensus 61 --~~~~i~~g~~i~l~~r 76 (78)
T 2faz_A 61 --FDYEVRLNDTIQLLVR 76 (78)
T ss_dssp --TTTTCCTTCEEEEEEC
T ss_pred --HHcCCCCCCEEEEEEe
Confidence 2567889999988754
No 79
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=91.23 E-value=0.3 Score=30.35 Aligned_cols=73 Identities=7% Similarity=0.125 Sum_probs=43.6
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|+|+...+ + +.++++ ...||.+|-+.|.+... ..+.+|+. .|+ +|-|++.+
T Consensus 18 m~I~Vk~~~g-------~--~~l~v~-----~~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk------~L~D~~tL---- 72 (106)
T 1wx7_A 18 IKVTVKTPKD-------K--EDFSVT-----DTCTIQQLKEEISQRFKAHPDQLVLIF-AGK------ILKDPDSL---- 72 (106)
T ss_dssp EEEEEECSSC-------E--EEEEEE-----TTCCHHHHHHHHHHHHTCCTTTEEEEE-TTE------ECCTTSCH----
T ss_pred EEEEEEeCCC-------c--EEEEEC-----CCCcHHHHHHHHHHHHCcChhhEEEEE-CCE------ECCCcCcH----
Confidence 6777877542 2 356777 56899999999987652 22223322 122 12122211
Q ss_pred CccCccCCCCEEEEEecCCCC
Q 034276 79 QLDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 79 g~~t~L~dgD~V~i~p~v~GG 99 (99)
.++.+++|+.|.++-...||
T Consensus 73 -~~~gi~~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 73 -AQCGVRDGLTVHLVIKRQHR 92 (106)
T ss_dssp -HHHTCCTTEEEEEEECCCCC
T ss_pred -HHcCCCCCCEEEEEEcCCCC
Confidence 24578899999998776664
No 80
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=90.83 E-value=1.6 Score=28.54 Aligned_cols=71 Identities=10% Similarity=0.132 Sum_probs=42.2
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--Cccccccc-ccCCccccceEEEEcCccceec
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMF-MKGDSVRPGVLVLVNDCDWELS 77 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~-~~~g~l~~~v~ilvNg~di~~l 77 (99)
|+|+|+... |+ .+.++++ +..||.++=+.+.+.. |..+.+|+ .+.|.. |-+++. |
T Consensus 3 m~i~vk~~~------g~--~~~l~v~-----~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~------L~d~~t---L 60 (159)
T 3rt3_B 3 WDLTVKMLA------GN--EFQVSLS-----SSMSVSELKAQITQKIGVHAFQQRLAVHPSGVA------LQDRVP---L 60 (159)
T ss_dssp CEEEEEETT------SC--EEEEECC-----TTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCB------CCTTSC---G
T ss_pred eEEEEEECC------CC--EEEEEeC-----CCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCC------CCCCCC---H
Confidence 688888653 32 3567887 5789999988888765 33333443 322321 112221 1
Q ss_pred CCccCccCCCCEEEEEec
Q 034276 78 GQLDTTLEEKDVVVFIST 95 (99)
Q Consensus 78 ~g~~t~L~dgD~V~i~p~ 95 (99)
.++.+++|+.|.++-.
T Consensus 61 --~~y~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 61 --ASQGLGPGSTVLLVVD 76 (159)
T ss_dssp --GGGTCCTTCEEEEEEC
T ss_pred --HHcCCCCCCEEEEEcc
Confidence 3567888888877654
No 81
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=90.80 E-value=1.2 Score=28.17 Aligned_cols=63 Identities=11% Similarity=0.190 Sum_probs=40.1
Q ss_pred EEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCC
Q 034276 20 VHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLH 97 (99)
Q Consensus 20 ~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~ 97 (99)
...++++ ...||.+|-+.+++.. |..+.+|+.. |+ .|-++ ..| .++.+++|+.|.++-...
T Consensus 21 ~~~l~v~-----~~~TV~~LK~~I~~~~gip~~~qrLi~~-Gk------~L~D~---~tL--~~ygI~~gstI~l~~~~~ 83 (114)
T 2kdi_A 21 TITLEVE-----SSDTIDNVKSKIQDKEGIPPDQQRLIWA-GK------QLEDG---RTL--SDYNIQRESTLHLVLRLR 83 (114)
T ss_dssp EEEEECC-----TTCBHHHHHHHHHHHHCCCGGGEEEEET-TE------ECCTT---CBT--TTTTCCSSCEEEEEECCC
T ss_pred EEEEEEC-----CCCcHHHHHHHHHHHHCcChHHEEEEEC-CE------ECCCC---CcH--HHCCCCCCCEEEEEEEcC
Confidence 3567887 5789999999998865 3333334322 22 12122 222 256788999999988877
Q ss_pred CC
Q 034276 98 GG 99 (99)
Q Consensus 98 GG 99 (99)
||
T Consensus 84 GG 85 (114)
T 2kdi_A 84 GG 85 (114)
T ss_dssp SS
T ss_pred CC
Confidence 76
No 82
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=90.56 E-value=0.66 Score=28.82 Aligned_cols=69 Identities=14% Similarity=0.070 Sum_probs=40.9
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|+|+... | +.+.++++ ...||.+|-+.++++.. ..+.+|+. .|+ .|-+++. |
T Consensus 24 m~I~Vk~~~------g--~~~~l~v~-----~~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk------~L~D~~t---L- 79 (106)
T 1ttn_A 24 CQLRLRLST------G--KDLKLVVR-----STDTVFHMKRRLHAAEGVEPGSQRWFF-SGR------PLTDKMK---F- 79 (106)
T ss_dssp EEEEEEETT------T--EEEEEEEC-----TTSHHHHHHHHHHHTTCCCSTTCEEEE-TTE------ECCTTSH---H-
T ss_pred EEEEEEcCC------C--CEEEEEeC-----CCCcHHHHHHHHHHHHCcCcccEEEEE-CCE------ECCCCCc---H-
Confidence 677777654 3 23567888 57899999999988653 22223332 122 1112211 1
Q ss_pred CccCccCCCCEEEEEe
Q 034276 79 QLDTTLEEKDVVVFIS 94 (99)
Q Consensus 79 g~~t~L~dgD~V~i~p 94 (99)
.++.+++|+.|.++-
T Consensus 80 -~~ygI~~g~ti~lv~ 94 (106)
T 1ttn_A 80 -EELKIPKDYVVQVIV 94 (106)
T ss_dssp -HHCCCSSSCEEEEEC
T ss_pred -HHcCCCCCCEEEEEE
Confidence 246788999987764
No 83
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=90.46 E-value=1 Score=28.01 Aligned_cols=70 Identities=10% Similarity=0.060 Sum_probs=40.6
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHH-HHh--cCcccccccccCCccccceEEEEcCccceec
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWV-GTN--LIKERPEMFMKGDSVRPGVLVLVNDCDWELS 77 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L-~~~--~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l 77 (99)
|+|+|+... |+...++++++ ...||.+|=+.+ .+. +|..+.+|+. .|+ +|-+++.+
T Consensus 20 m~I~VKtl~------g~~~~i~v~v~-----~~~TV~~lK~~I~~~~~gip~~~QrLi~-~Gk------~L~D~~tL--- 78 (98)
T 4a20_A 20 VHLTLKKIQ------APKFSIEHDFS-----PSDTILQIKQHLISEEKASHISEIKLLL-KGK------VLHDNLFL--- 78 (98)
T ss_dssp EEEEEEECS------SSCEEEEEEEC-----TTCBHHHHHHHHHHTTSCSCGGGEEEEE-TTE------EECTTCBG---
T ss_pred EEEEEEcCC------CCEEEEEEecC-----CCChHHHHHHHHHHHhcCCChhhEEEEE-CCE------ECcCcCCH---
Confidence 678887654 33233556776 578999999998 443 2322333332 222 23333332
Q ss_pred CCccCcc-CCCCEEEEE
Q 034276 78 GQLDTTL-EEKDVVVFI 93 (99)
Q Consensus 78 ~g~~t~L-~dgD~V~i~ 93 (99)
.++.+ ++|+.|.++
T Consensus 79 --~dy~I~~~g~ti~lm 93 (98)
T 4a20_A 79 --SDLKVTPANSTITVM 93 (98)
T ss_dssp --GGSCCBTTBCEEEEE
T ss_pred --HHcCcCCCCCEEEEE
Confidence 25678 899998876
No 84
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=90.29 E-value=0.7 Score=28.22 Aligned_cols=57 Identities=11% Similarity=0.047 Sum_probs=35.5
Q ss_pred EEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEe
Q 034276 20 VHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIS 94 (99)
Q Consensus 20 ~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p 94 (99)
.+.++++ ...||.+|-+.|.+.. |..+.+|+. .|+. + ++. .| .++.+++|+.|.++-
T Consensus 28 ~~~i~v~-----~~~TV~~LK~~I~~~tgip~~~QrL~~-~Gk~------L-dd~---tL--~~~~i~~g~~i~lv~ 86 (95)
T 1v86_A 28 KHDVKVP-----LDSTGSELKQKIHSITGLPPAMQKVMY-KGLV------P-EDK---TL--REIKVTSGAKIMVVG 86 (95)
T ss_dssp EEEEEEC-----TTSBHHHHHHHHHHHHCSCSTTCCCBS-SSBC------C-SSS---BH--HHHCCCTTEEEEECC
T ss_pred EEEEEEC-----CCCcHHHHHHHHHHHHCcCHHHeEEEE-CCee------C-CcC---cH--HHCCCCCCCEEEEEe
Confidence 4578888 5789999999988766 333444443 2321 2 332 22 245678888887764
No 85
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=90.26 E-value=0.22 Score=32.66 Aligned_cols=26 Identities=12% Similarity=0.272 Sum_probs=22.1
Q ss_pred EEEcCccceecCCccCccCCCCEEEE
Q 034276 67 VLVNDCDWELSGQLDTTLEEKDVVVF 92 (99)
Q Consensus 67 ilvNg~di~~l~g~~t~L~dgD~V~i 92 (99)
.+|||+.++.-.+..++|++||+|.|
T Consensus 91 T~vNg~~i~l~~~~~~~L~~GD~I~l 116 (132)
T 3va4_A 91 TQIVKPPRVLPPGVSHRLRDQELILF 116 (132)
T ss_dssp EEETTTTEEECTTCCEECCTTCEEEE
T ss_pred eEECCEEcccCCCCEEECCCCCEEEE
Confidence 78899997666677789999999987
No 86
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=90.20 E-value=0.54 Score=30.09 Aligned_cols=64 Identities=16% Similarity=0.162 Sum_probs=41.9
Q ss_pred EEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCC-ccCccCCCCEEEEEecCCC
Q 034276 20 VHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQ-LDTTLEEKDVVVFISTLHG 98 (99)
Q Consensus 20 ~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g-~~t~L~dgD~V~i~p~v~G 98 (99)
++.+.+. ...+++.|.++.+++..-.. ..+-++.+|+.+..-+- .+.-+++||.|.++...-|
T Consensus 38 ~i~fkVk-----~~t~l~kL~~ay~ek~gi~~-----------~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~G 101 (110)
T 2k8h_A 38 EMFFRIK-----SRTALKKLIDTYCKKQGISR-----------NSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTG 101 (110)
T ss_dssp CEEEEEC-----TTSSHHHHHHHHHHHHTCCS-----------SSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCC
T ss_pred EEEEEEC-----CCChHHHHHHHHHHHhCCCc-----------ccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccC
Confidence 3567787 57899999999998653211 12334445655543211 1236899999999998888
Q ss_pred C
Q 034276 99 G 99 (99)
Q Consensus 99 G 99 (99)
|
T Consensus 102 g 102 (110)
T 2k8h_A 102 G 102 (110)
T ss_dssp C
T ss_pred c
Confidence 7
No 87
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=89.82 E-value=0.49 Score=28.58 Aligned_cols=69 Identities=16% Similarity=0.241 Sum_probs=41.4
Q ss_pred CeEEEEEcchHhhhcCCeeEEEE-EeCCCCCCCcchHHHHHHHHHHhc--Ccccccccc--cCCccccceEEEEcCccce
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNV-DVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFM--KGDSVRPGVLVLVNDCDWE 75 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~v-ev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~--~~g~l~~~v~ilvNg~di~ 75 (99)
|+|+|++. | +.+.+ +++ ...||.+|-+.+.+.. |..+.+|+. -.|. ++-++..+
T Consensus 8 m~i~Vk~~-------g--~~~~i~~v~-----~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk------~L~D~~~L- 66 (90)
T 1v5t_A 8 LPIIVKWG-------G--QEYSVTTLS-----EDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGK------PAENDVKL- 66 (90)
T ss_dssp CCEEEEET-------T--EEEEECSCC-----SSSBHHHHHHHHHHHTCCCTTTCEEESCEETTE------ECCTTSBH-
T ss_pred EEEEEEEC-------C--EEEEEEEeC-----CCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCc------CcCCCCCH-
Confidence 67888852 2 23567 777 5789999999998766 333434441 1222 12222222
Q ss_pred ecCCccCccCCCCEEEEEe
Q 034276 76 LSGQLDTTLEEKDVVVFIS 94 (99)
Q Consensus 76 ~l~g~~t~L~dgD~V~i~p 94 (99)
.++.+++|+.|.++-
T Consensus 67 ----~~~~i~~g~~l~l~~ 81 (90)
T 1v5t_A 67 ----GALKLKPNTKIMMMG 81 (90)
T ss_dssp ----HHHTCCTTEEEEEEC
T ss_pred ----HHcCCCCCCEEEEEe
Confidence 235678999888874
No 88
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=89.28 E-value=0.2 Score=32.75 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=19.5
Q ss_pred EEEEcCccceecCCccCccCCCCEEEE
Q 034276 66 LVLVNDCDWELSGQLDTTLEEKDVVVF 92 (99)
Q Consensus 66 ~ilvNg~di~~l~g~~t~L~dgD~V~i 92 (99)
-++|||+.|. ..++|++||.|.|
T Consensus 91 gt~VNG~~V~----~~~~L~~GD~I~l 113 (124)
T 3fm8_A 91 RTFVNGSSVS----SPIQLHHGDRILW 113 (124)
T ss_dssp CEEETTEECC----SCEEECTTCEEEE
T ss_pred CEEECCEEcC----CcEECCCCCEEEE
Confidence 3899999985 3589999999987
No 89
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=89.26 E-value=0.32 Score=29.22 Aligned_cols=60 Identities=5% Similarity=0.105 Sum_probs=33.0
Q ss_pred EEeCCCCCCCcchHHHHHHHHHHhcCcc--cccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEe
Q 034276 23 VDVVPPKGSEKLIMKDLLSWVGTNLIKE--RPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIS 94 (99)
Q Consensus 23 vev~~~~~~~~~tv~dll~~L~~~~~~~--~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p 94 (99)
++++ ..+|+.+|.+.+.+..+.. ...++.....-.+ + ....+..+ .+..|+.||.|.+.|
T Consensus 18 i~v~-----~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~-l-~~~~~~~l-----~~lgl~hGd~l~l~~ 79 (80)
T 2pjh_A 18 ITAT-----KRETAATFLKKVAKEFGFQNNGFSVYINRNKTGE-I-TASSSKSL-----HLLKIKHGDLLFLFP 79 (80)
T ss_dssp CCCC-----SSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGG-S-SSCCCCTT-----TTTCCCTTCCEEC--
T ss_pred EEcC-----CcChHHHHHHHHHHHcCCCCCcceEEecCCCCCc-c-cCCCCCCH-----HHcCCCCCCEEEEec
Confidence 6666 5789999999999988643 2234332211011 1 00022222 134678999998877
No 90
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=88.52 E-value=0.92 Score=26.77 Aligned_cols=34 Identities=6% Similarity=0.148 Sum_probs=24.0
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL 47 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~ 47 (99)
|+|+|+... |+ .+.++++ ...||.+|=+.+++..
T Consensus 18 m~i~Vk~~~------g~--~~~~~v~-----~~~tV~~lK~~i~~~~ 51 (88)
T 4eew_A 18 LEVLVKTLD------SQ--TRTFIVG-----AQMNVKEFKEHIAASV 51 (88)
T ss_dssp EEEEEEETT------SC--EEEEEEE-----TTCBHHHHHHHHHHHH
T ss_pred EEEEEEcCC------CC--EEEEEEC-----CCCCHHHHHHHHHHHh
Confidence 567777642 32 3467777 5789999999998765
No 91
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.51 E-value=1 Score=27.24 Aligned_cols=70 Identities=7% Similarity=0.103 Sum_probs=38.9
Q ss_pred CeEEEEEcchHhhhcCCeeEEEE-EeCCCCCCCcchHHHHHHHHHHhc---Ccccccc-cccCCccccceEEEEcCccce
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNV-DVVPPKGSEKLIMKDLLSWVGTNL---IKERPEM-FMKGDSVRPGVLVLVNDCDWE 75 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~v-ev~~~~~~~~~tv~dll~~L~~~~---~~~~~~l-~~~~g~l~~~v~ilvNg~di~ 75 (99)
|+|+|+-.. |++....+ +++ +..||.+|-+.+.+.. |..+.+| |...|. +|-++ .
T Consensus 11 M~I~Vk~~~------g~~~~~~l~~v~-----~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk------~L~D~---~ 70 (88)
T 2dzj_A 11 YEVEILDAK------TREKLCFLDKVE-----PHATIAEIKNLFTKTHPQWYPARQSLRLDPKGK------SLKDE---D 70 (88)
T ss_dssp EEEEEEESS------SCCCCEEEEEEC-----SSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSC------CCCTT---C
T ss_pred EEEEEECCC------CCEEeeEEeEcC-----CCCcHHHHHHHHHHHhcCCChHHeEEEecCCCc------CcCCC---C
Confidence 567776432 32221246 787 5789999999998843 3334444 333343 22122 2
Q ss_pred ecCCccCccCCCCEEEE
Q 034276 76 LSGQLDTTLEEKDVVVF 92 (99)
Q Consensus 76 ~l~g~~t~L~dgD~V~i 92 (99)
.|. ++.+++|+.|.|
T Consensus 71 tL~--~y~i~~~stl~~ 85 (88)
T 2dzj_A 71 VLQ--KLPVGTTATLYF 85 (88)
T ss_dssp BTT--TSSCCSEEEEEE
T ss_pred CHH--HcCCCCCCEEEE
Confidence 232 467777776643
No 92
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=87.99 E-value=0.31 Score=32.72 Aligned_cols=23 Identities=13% Similarity=0.107 Sum_probs=19.0
Q ss_pred EEEEcCccceecCCccCccCCCCEEEE
Q 034276 66 LVLVNDCDWELSGQLDTTLEEKDVVVF 92 (99)
Q Consensus 66 ~ilvNg~di~~l~g~~t~L~dgD~V~i 92 (99)
-++|||+.|. ..+.|++||+|.|
T Consensus 111 gt~VNG~~i~----~~~~L~~GD~I~~ 133 (154)
T 4ejq_A 111 DTYVNGKKVT----EPSILRSGNRIIM 133 (154)
T ss_dssp CEEETTEECC----SCEECCTTCEEEE
T ss_pred ceEECCEEcC----CceECCCCCEEEE
Confidence 3889999883 2578999999987
No 93
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=87.90 E-value=1.3 Score=29.52 Aligned_cols=63 Identities=10% Similarity=0.202 Sum_probs=37.0
Q ss_pred EEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCC
Q 034276 20 VHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLH 97 (99)
Q Consensus 20 ~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~ 97 (99)
.+.++++ ...||.+|=+.+.++. |....+|+.. |+ .|-|+ ..| .++.+++|+.|.++-.+-
T Consensus 108 ~~~l~v~-----~~~tV~~lK~~I~~~~gip~~~q~L~~~-g~------~L~D~---~tL--~~y~i~~g~tl~l~~rlr 170 (172)
T 3u30_A 108 TITLEVE-----PSDTIENVKAKIQDKEGIPPDQQRLIFA-GK------QLEDG---RTL--SDYNIQKESTLHLVLRLR 170 (172)
T ss_dssp EEEEEEC-----TTCBHHHHHHHHHHHHCCCGGGCCEEET-TE------ECCTT---SBS--GGGTCCTTCEEEECC---
T ss_pred ceeEEec-----CCCCHHHHHHHHHHHhCCCceeEEEEEC-Cc------cCCCC---CcH--HHhCCCCCCEEEEEEecC
Confidence 4577787 5789999999998875 3333333322 22 12222 223 356899999999999888
Q ss_pred CC
Q 034276 98 GG 99 (99)
Q Consensus 98 GG 99 (99)
||
T Consensus 171 gG 172 (172)
T 3u30_A 171 GG 172 (172)
T ss_dssp --
T ss_pred CC
Confidence 87
No 94
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=87.57 E-value=1.1 Score=27.64 Aligned_cols=58 Identities=16% Similarity=0.126 Sum_probs=36.3
Q ss_pred EEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceec-CCccCccCCCCEEEEE
Q 034276 21 HNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELS-GQLDTTLEEKDVVVFI 93 (99)
Q Consensus 21 ~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l-~g~~t~L~dgD~V~i~ 93 (99)
..+.++ ...||.+|+.+.|.+-.-... ..|-.+..|.+++.- .=.++.++|||.|..+
T Consensus 22 l~f~I~-----~~t~v~kLi~ayc~~~~I~~~----------~~IrllFDGdRLdp~~tp~DlemeD~D~IDvm 80 (82)
T 3goe_A 22 LRLSIP-----VDFTVKDLIKRYCTEVKISFH----------ERIRLEFEGEWLDPNDQVQSTELEDEDQVSVV 80 (82)
T ss_dssp EEEEEE-----TTSBHHHHHHHHHHHHTCCCC----------TTCEEEETTEECCTTSBGGGSSCCTTCEEEEE
T ss_pred eEEEec-----CCCCHHHHHHHHHHHcCCCcC----------ceEEEEEcCcccCccCChhhhCCcCCceeeee
Confidence 568888 679999999999986643222 022233333333222 1246789999999764
No 95
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=87.29 E-value=1.1 Score=28.16 Aligned_cols=63 Identities=3% Similarity=-0.096 Sum_probs=41.1
Q ss_pred EEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEecCC
Q 034276 20 VHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLH 97 (99)
Q Consensus 20 ~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~ 97 (99)
.+.++++ ...||.+|=+.+.+... ..+.+|+. .|. +|-+++.+ .++.+++|+.|.++-..-
T Consensus 47 ~~~l~v~-----~~~TV~~LK~~I~~~~gip~~~QrL~~-~Gk------~L~D~~tL-----~~y~i~~g~~i~lv~rl~ 109 (115)
T 1we7_A 47 GLVFTLP-----LTDQVSVIKVKIHEATGMPAGKQKLQY-EGI------FIKDSNSL-----AYYNMASGAVIHLALKER 109 (115)
T ss_dssp EEEEEEC-----SCSBTHHHHHHHHHHSSCCTTTEEEEE-TTE------EECTTSBH-----HHHTCCSSCEEEEEECCC
T ss_pred EEEEEEC-----CCCCHHHHHHHHHHHHCCChHHEEEEE-CCE------ECCCCCCH-----HHCCCCCCCEEEEEEEcC
Confidence 4578888 57899999999988662 22333432 222 23233222 245788999999998888
Q ss_pred CC
Q 034276 98 GG 99 (99)
Q Consensus 98 GG 99 (99)
||
T Consensus 110 GG 111 (115)
T 1we7_A 110 SG 111 (115)
T ss_dssp SC
T ss_pred CC
Confidence 87
No 96
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=87.04 E-value=0.36 Score=30.76 Aligned_cols=24 Identities=17% Similarity=0.007 Sum_probs=19.3
Q ss_pred EEEEcCccceecCCccCccCCCCEEEEE
Q 034276 66 LVLVNDCDWELSGQLDTTLEEKDVVVFI 93 (99)
Q Consensus 66 ~ilvNg~di~~l~g~~t~L~dgD~V~i~ 93 (99)
-++|||+.+. ..++|++||+|.|=
T Consensus 81 gt~vNg~~i~----~~~~L~~GD~I~iG 104 (120)
T 1wln_A 81 ETYVDGQRIS----ETTMLQSGMRLQFG 104 (120)
T ss_dssp CEEETSCBCS----SCEEECTTCEEEET
T ss_pred CEEECCEEcC----CCEECCCCCEEEEC
Confidence 3789999885 34799999999874
No 97
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=86.82 E-value=2.6 Score=32.20 Aligned_cols=68 Identities=16% Similarity=0.247 Sum_probs=41.6
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHh-----cCcccccccccCCccccceEEEEcCccce
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTN-----LIKERPEMFMKGDSVRPGVLVLVNDCDWE 75 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~-----~~~~~~~l~~~~g~l~~~v~ilvNg~di~ 75 (99)
|+|+||... | +.+.++++ ...||.+|-+.+.+. +|..+-+|+. .|+ +|-+++.+
T Consensus 8 M~I~VKtl~------G--k~~~leV~-----~~~TV~~LK~~I~~~~~~~gip~~~QrLiy-~GK------~L~D~~tL- 66 (368)
T 1oqy_A 8 VTITLKTLQ------Q--QTFKIRME-----PDETVKVLKEKIEAEKGRDAFPVAGQKLIY-AGK------ILSDDVPI- 66 (368)
T ss_dssp CCEEEEETT------T--EEEEECCC-----TTCBHHHHHHHHHHHTCSSSCCSTEEEEES-SSS------EECSSSBT-
T ss_pred EEEEEEeCC------C--CEEEEEeC-----CCChHHHHHHHHHHHhCcCCCChhheEEEE-CCe------ecCCcCCH-
Confidence 788888763 3 23567777 578999999999984 3333334433 232 33333322
Q ss_pred ecCCccCccCCCCEE-EEE
Q 034276 76 LSGQLDTTLEEKDVV-VFI 93 (99)
Q Consensus 76 ~l~g~~t~L~dgD~V-~i~ 93 (99)
.++.+++|+.| .++
T Consensus 67 ----~dygI~~gstIv~lv 81 (368)
T 1oqy_A 67 ----RDYRIDEKNFVVVMV 81 (368)
T ss_dssp ----TTTCCCTTSCEEEEE
T ss_pred ----HHcCCCCCCEEEEEE
Confidence 25678888877 444
No 98
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=86.65 E-value=0.57 Score=28.02 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=31.7
Q ss_pred cchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEe
Q 034276 33 KLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIS 94 (99)
Q Consensus 33 ~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p 94 (99)
++|+.|+...+.. .+. +.-+...|||+-|+ +.++|++++.|.|+.
T Consensus 28 ~~T~~dia~~i~~---~l~----------~~~vaakvNg~l~d----L~~~l~~d~~ve~vt 72 (88)
T 1wwt_A 28 KTTPYQIACGISQ---GLA----------DNTVIAKVNNVVWD----LDRPLEEDCTLELLK 72 (88)
T ss_dssp TCCHHHHHHHSST---TTG----------GGCCCEEESSSEEC----SSSCCCSSEEEEECS
T ss_pred CCCHHHHHHHhhh---ccc----------cceEEEEECCEEEC----CCcCcCCCCEEEEEe
Confidence 7898888776532 222 22345678998765 689999999999875
No 99
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=86.43 E-value=4 Score=24.96 Aligned_cols=71 Identities=8% Similarity=0.131 Sum_probs=42.6
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|+|+.. |+ ...++++ ...||.+|-+.+++... ...-+|+. .|+ +|-+++. |
T Consensus 26 m~I~Vk~~-------g~--~~~l~v~-----~~~TV~~LK~~I~~~~gip~~~qrLi~-~Gk------~L~D~~t---L- 80 (101)
T 2klc_A 26 MKVTVKTP-------KE--KEEFAVP-----ENSSVQQFKEEISKRFKSHTDQLVLIF-AGK------ILKDQDT---L- 80 (101)
T ss_dssp EEEEEECS-------SC--EEEEEEC-----SCCCHHHHHHHHHHHHTCCGGGEEEEE-TTE------EECTTCC---T-
T ss_pred EEEEEEeC-------Cc--EEEEEEC-----CCCCHHHHHHHHHHHHCcChhhEEEEE-CCE------ECCCcCc---H-
Confidence 56777764 32 2467787 57899999999987652 22223332 222 2223222 2
Q ss_pred CccCccCCCCEEEEEecCC
Q 034276 79 QLDTTLEEKDVVVFISTLH 97 (99)
Q Consensus 79 g~~t~L~dgD~V~i~p~v~ 97 (99)
.++.+++|+.|.++-...
T Consensus 81 -~~~gI~~g~~I~l~~~~~ 98 (101)
T 2klc_A 81 -SQHGIHDGLTVHLVIKTQ 98 (101)
T ss_dssp -GGGTCCTTCEEEEEECCS
T ss_pred -HHcCCCCCCEEEEEEcCC
Confidence 246788999998876543
No 100
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=85.62 E-value=3.9 Score=31.86 Aligned_cols=64 Identities=19% Similarity=0.214 Sum_probs=39.9
Q ss_pred EEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCcc------ceec---------CCccCcc
Q 034276 20 VHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCD------WELS---------GQLDTTL 84 (99)
Q Consensus 20 ~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~d------i~~l---------~g~~t~L 84 (99)
...|.+| .++++-++++...+. |.+.... ......+++--|||.. |.++ +-.++.+
T Consensus 331 ~~~Vtv~-----~gssll~vLk~A~e~-~~F~F~~---~es~~G~fItSInG~~~~~~~YW~l~~~p~~pl~~Gv~~y~~ 401 (414)
T 2bb6_A 331 RHSVSVP-----AGSSLEDILKNAQEH-GRFRFRT---QASLSGPFLTSVLGRKAGEREFWQVLRDPDTPLQQGIADYRP 401 (414)
T ss_dssp EEEEEEE-----TTCCHHHHHHHHHHS-SSCCEEE---ECCTTSCEEEEETTEECCTTEEEEEEETTTEECSSCTTTCCC
T ss_pred ceEEEec-----CCCCHHHHHHHHHhc-cCCceEe---eecCCCceEEEECCCccCCCceEEEEECCCCcccccccceec
Confidence 4578899 799999999999987 6553221 1122233334444322 3333 3345688
Q ss_pred CCCCEEEE
Q 034276 85 EEKDVVVF 92 (99)
Q Consensus 85 ~dgD~V~i 92 (99)
++||.|.|
T Consensus 402 ~~ge~I~f 409 (414)
T 2bb6_A 402 KDGETIEL 409 (414)
T ss_dssp CTTCEEEE
T ss_pred CCCCEEEE
Confidence 99999987
No 101
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=85.01 E-value=3.2 Score=26.21 Aligned_cols=60 Identities=10% Similarity=0.019 Sum_probs=39.0
Q ss_pred CcchHHHHHHHHHHhcCcccc---ccc------ccCCccccceEEEEcCccceecCCccCccCCCCEEEEE
Q 034276 32 EKLIMKDLLSWVGTNLIKERP---EMF------MKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFI 93 (99)
Q Consensus 32 ~~~tv~dll~~L~~~~~~~~~---~l~------~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~ 93 (99)
+++|+.++|+..-. +..... ... ..+.+=|++-...+||+.... +-.+++|++||.|.|.
T Consensus 28 ~g~tL~dvLk~~~~-ve~e~s~~G~fITsI~G~~ad~~~~~yW~~~vng~~~~~-Ga~~~~v~dGD~i~~~ 96 (101)
T 3u7z_A 28 DAKYLGEVLESENL-VDGESGEYGLFITTVDEETADDSKQQWWCITKGGEQVNT-SADQTPVSDGDAFELT 96 (101)
T ss_dssp CCSBHHHHHHHTTC-EEEECCTTSCEEEEETTEECCGGGTEEEEEEETTEECCS-CGGGCBCCTTCEEEEE
T ss_pred CccHHHHHHHHcCc-cccccccccceEEEEcCEecCCCCCCEEEEEECCEEhhh-chhheEecCCCEEEEE
Confidence 78999999976642 211000 011 112234778888999988754 5667899999999885
No 102
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=84.81 E-value=0.53 Score=32.60 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=20.3
Q ss_pred ceEEEEcCccceecCCccCccCCCCEEEE
Q 034276 64 GVLVLVNDCDWELSGQLDTTLEEKDVVVF 92 (99)
Q Consensus 64 ~v~ilvNg~di~~l~g~~t~L~dgD~V~i 92 (99)
+-.++|||+.|. ..|.|..||.|.|
T Consensus 139 ~a~t~VNG~~I~----~~~~L~~GDrI~l 163 (184)
T 4egx_A 139 GADTYVNGKKVT----EPSILRSGNRIIM 163 (184)
T ss_dssp TCCEEETTEECC----SCEECCTTCEEEE
T ss_pred CCeEEEcCEEcc----ccEEcCCCCEEEE
Confidence 334899999984 3689999999976
No 103
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=84.28 E-value=1.7 Score=27.05 Aligned_cols=36 Identities=6% Similarity=0.066 Sum_probs=24.5
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL 47 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~ 47 (99)
|+|+|+...+ +...+.++++ ...||.+|=+.|.++.
T Consensus 24 m~I~VK~~~g------~~~~i~l~v~-----~~~TV~~LK~~I~~~~ 59 (99)
T 2kdb_A 24 VTLIIKAPNQ------KYSDQTISCF-----LNWTVGKLKTHLSNVY 59 (99)
T ss_dssp EEEEEECTTS------SSCCEEEEEC-----TTSBHHHHHHHHHHHS
T ss_pred EEEEEEcCCC------CEEEEEEEcC-----CCCHHHHHHHHHHHHh
Confidence 5677775432 2123467777 5789999999999865
No 104
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=83.63 E-value=2.5 Score=26.35 Aligned_cols=68 Identities=12% Similarity=0.078 Sum_probs=40.4
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|.|+.. .|+ ++.+++. +..||.+|=+.++++.. ...-+|.. .|+ +|- |...|
T Consensus 22 IqI~Vk~~------~Gk--k~~v~v~-----p~DTI~~LK~~I~~k~Gip~~qQrLif-~Gk------~Lk---D~~TL- 77 (93)
T 3plu_A 22 IEVVVNDR------LGK--KVRVKCL-----GEDSVGDFKKVLSLQIGTQPNKIVLQK-GGS------VLK---DHISL- 77 (93)
T ss_dssp EEEEEECT------TSC--EEEEEEE-----TTSBHHHHHHHHHHHHTCCGGGEEEEE-TTE------ECC---TTSBT-
T ss_pred EEEEEECC------CCC--EEEEEEC-----CcCHHHHHHHHHHHHhCCCHHHEEEEe-CCE------Ecc---CcCCH-
Confidence 35666553 554 3467776 57899999999987663 22223321 222 222 22333
Q ss_pred CccCccCCCCEEEEE
Q 034276 79 QLDTTLEEKDVVVFI 93 (99)
Q Consensus 79 g~~t~L~dgD~V~i~ 93 (99)
.++.+++|+.+.++
T Consensus 78 -~dY~I~dgstLhL~ 91 (93)
T 3plu_A 78 -EDYEVHDQTNLELY 91 (93)
T ss_dssp -GGGTCCTTCEEEEE
T ss_pred -HHcCCCCCCEEEEE
Confidence 47899999998775
No 105
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=83.45 E-value=1.8 Score=25.67 Aligned_cols=34 Identities=9% Similarity=0.157 Sum_probs=25.8
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEE-eCCCCCCCcchHHHHHHHHHHhcC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVD-VVPPKGSEKLIMKDLLSWVGTNLI 48 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~ve-v~~~~~~~~~tv~dll~~L~~~~~ 48 (99)
|+|+|+...+ +. .++ ++ ...||.+|-+.++++..
T Consensus 1 m~i~vr~~~G-------~~--~v~~l~-----~~~Tv~~Lk~~I~~~~g 35 (86)
T 2kzr_A 1 WRVRCKAKGG-------TH--LLQGLS-----SRTRLRELQGQIAAITG 35 (86)
T ss_dssp CCEEEEETTE-------EE--EECSCC-----TTCBHHHHHHHHHHHTC
T ss_pred CEEEEEcCCC-------CE--EeeecC-----CCCCHHHHHHHHHHHhC
Confidence 8899988775 12 255 66 57899999999998753
No 106
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=83.27 E-value=5.1 Score=23.51 Aligned_cols=58 Identities=12% Similarity=0.079 Sum_probs=37.3
Q ss_pred EEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCC-ccCccCCCCEEEEE
Q 034276 20 VHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQ-LDTTLEEKDVVVFI 93 (99)
Q Consensus 20 ~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g-~~t~L~dgD~V~i~ 93 (99)
++.+.+. ...+++.|.++.+++..-. ...+-++-+|+.+..-+- .+.-+++||.|.++
T Consensus 20 ~i~~~i~-----~~t~l~kl~~~y~~~~gi~-----------~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 20 MLEISLS-----PDSPLKVLMSHYEEAMGLS-----------GHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEEC-----TTSCHHHHHHHHHHHHTCT-----------TCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEC-----CCChHHHHHHHHHHHhCCC-----------cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 3567787 5789999999999865321 113445557766543211 12268899999876
No 107
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=83.07 E-value=5.7 Score=23.92 Aligned_cols=66 Identities=8% Similarity=0.052 Sum_probs=40.5
Q ss_pred EEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEe
Q 034276 20 VHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIS 94 (99)
Q Consensus 20 ~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p 94 (99)
..+..+| ...||.+|=..|.+.+ |....+|+..++. .+...+.+++.+ ..| ..+.+.+||.|.+.-
T Consensus 24 ~~e~~l~-----~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~-~~~~~~~L~~d~-~~L--~~y~i~~G~~I~V~d 91 (97)
T 1wjn_A 24 ILEKQLP-----DSMTVQKVKGLLSRLLKVPVSELLLSYESSK-MPGREIELENDL-QPL--QFYSVENGDCLLVRW 91 (97)
T ss_dssp CEEEEEE-----TTSBHHHHHHHHHTTTTCCTTTCEEEEECTT-SCSCEEECCCSS-SBS--GGGTCCTTCEEEEEC
T ss_pred EEEEECC-----CCCCHHHHHHHHHHHHCCChhHeEEEEEcCC-CCceeeccCCCc-ccH--hhcCCCCCCEEEEEe
Confidence 3567787 5789999999998877 3444455543322 222333333222 233 357899999998753
No 108
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=83.05 E-value=7.8 Score=27.00 Aligned_cols=61 Identities=11% Similarity=0.169 Sum_probs=37.1
Q ss_pred EEEEeCCCCCCCcchHHHHHHHHHHhc-CcccccccccCCccccce----EEEEcCccceecCCccCccCC--CCEEEEE
Q 034276 21 HNVDVVPPKGSEKLIMKDLLSWVGTNL-IKERPEMFMKGDSVRPGV----LVLVNDCDWELSGQLDTTLEE--KDVVVFI 93 (99)
Q Consensus 21 ~~vev~~~~~~~~~tv~dll~~L~~~~-~~~~~~l~~~~g~l~~~v----~ilvNg~di~~l~g~~t~L~d--gD~V~i~ 93 (99)
.+++++ ++.||-|+|..+..+. |.+. |.. ..+.++ .+.|||+....- .|++.+ |+.++|-
T Consensus 26 ~~v~~~-----~~~tlL~~l~~~~~~~~~~l~---~~~--~c~~g~Cg~C~v~i~G~~~~aC---~~~~~~~~g~~~~ie 92 (241)
T 2bs2_B 26 YKIEEA-----PSMTIFIVLNMIRETYDPDLN---FDF--VCRAGICGSCGMMINGRPSLAC---RTLTKDFEDGVITLL 92 (241)
T ss_dssp EEEECC-----TTCBHHHHHHHHHHHTCTTCC---CCC--SSSSSSSCTTEEEETTEEEEGG---GCBGGGCTTSEEEEE
T ss_pred EEEeCC-----CCChHHHHHHHhchhcCCCCc---cCC--CCCCCCCCCCEeEECCCeecch---hCcHhHcCCCeEEEe
Confidence 456665 6899999999987653 3322 111 123343 577899876433 356666 5667765
Q ss_pred e
Q 034276 94 S 94 (99)
Q Consensus 94 p 94 (99)
|
T Consensus 93 ~ 93 (241)
T 2bs2_B 93 P 93 (241)
T ss_dssp C
T ss_pred c
Confidence 5
No 109
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=82.76 E-value=2.5 Score=26.16 Aligned_cols=49 Identities=8% Similarity=0.159 Sum_probs=31.7
Q ss_pred eEEEEEcc--hHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCc
Q 034276 2 QLTLEFGG--GLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDC 72 (99)
Q Consensus 2 ~v~V~f~a--~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~ 72 (99)
||+|+|-+ .+-. ..++ .+-+| ...|+.+++..|+++..- ..+-++||..
T Consensus 8 Kv~vrfk~~g~~P~-l~k~---KflV~-----~~~t~~~~v~~lRkrL~l-------------~alFlyVNn~ 58 (91)
T 3w1s_C 8 KIQIKFQPIGSIGQ-LKPS---VCKIS-----MSQSFAMVILFLKRRLKM-------------DHVYCYINNS 58 (91)
T ss_dssp EEEEEEEECCC-----------EEEEE-----TTSBHHHHHHHHHHHHTC-------------SCCEEEETTT
T ss_pred eEEEEEEecCCCCc-cccc---EEEcC-----CCCCHHHHHHHHHHhhCC-------------ceEEEEECCc
Confidence 68888876 3333 3322 36688 679999999999986531 2566888874
No 110
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=81.40 E-value=0.92 Score=29.51 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=18.6
Q ss_pred EEEcCccceecCCccCccCCCCEEEE
Q 034276 67 VLVNDCDWELSGQLDTTLEEKDVVVF 92 (99)
Q Consensus 67 ilvNg~di~~l~g~~t~L~dgD~V~i 92 (99)
.+|||+.|.- +..++|++||+|.|
T Consensus 96 T~vNg~ri~~--~~~~~L~~GD~I~~ 119 (130)
T 4h87_A 96 TFLNKTRIPP--RTYCRVHVGHVVRF 119 (130)
T ss_dssp EEETTEECCT--TCCEECCTTCEEEE
T ss_pred eEECCEECCC--CceeECCCCCEEEE
Confidence 6789988753 34468999999987
No 111
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=81.13 E-value=1.5 Score=27.65 Aligned_cols=68 Identities=6% Similarity=-0.068 Sum_probs=39.0
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|+|+-.. |+ .+.++++ +..||.+|-+.++++.. ..+-+|.. .|+ +|-|++ .|
T Consensus 29 m~I~VKtl~------Gk--~i~lev~-----p~dTV~~lK~~Ia~k~Gip~~qQrLi~-~Gk------~L~D~~---TL- 84 (100)
T 1uh6_A 29 IEVVCNDRL------GK--KVRVKCN-----TDDTIGDLKKLIAAQTGTRWNKIVLKK-WYT------IFKDHV---SL- 84 (100)
T ss_dssp EEEEEECSS------SS--CEEEEEE-----TTSBHHHHHHHHHHHHCCCGGGCEEEE-TTE------ECCSSC---BH-
T ss_pred EEEEEECCC------CC--EEEEEeC-----CCCcHHHHHHHHHHHhCCCHHHEEEEE-CCE------ECCCCC---CH-
Confidence 567776543 43 2457777 57899999999988753 22323322 222 232222 22
Q ss_pred CccCccCCCCEEEEE
Q 034276 79 QLDTTLEEKDVVVFI 93 (99)
Q Consensus 79 g~~t~L~dgD~V~i~ 93 (99)
.++.+++|+.|.+.
T Consensus 85 -~dygI~~gstlhL~ 98 (100)
T 1uh6_A 85 -GDYEIHDGMNLELY 98 (100)
T ss_dssp -HHHTCCTTEEEEEE
T ss_pred -HHcCCCCCCEEEEE
Confidence 24567888887654
No 112
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=81.02 E-value=0.65 Score=28.45 Aligned_cols=21 Identities=24% Similarity=0.367 Sum_probs=17.4
Q ss_pred EEEcCccceecCCccCccCCCCEEEE
Q 034276 67 VLVNDCDWELSGQLDTTLEEKDVVVF 92 (99)
Q Consensus 67 ilvNg~di~~l~g~~t~L~dgD~V~i 92 (99)
.+|||+.+. .++|++||+|.|
T Consensus 67 t~vng~~i~-----~~~L~~gd~i~i 87 (100)
T 3po8_A 67 TTVNNAPVQ-----EWQLADGDVIRL 87 (100)
T ss_dssp CEETTEECS-----EEECCTTCEEEE
T ss_pred EEECCEECc-----eEECCCCCEEEE
Confidence 677998774 579999999987
No 113
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=79.99 E-value=0.77 Score=29.85 Aligned_cols=22 Identities=14% Similarity=0.220 Sum_probs=18.0
Q ss_pred EEEcCccceecCCccCccCCCCEEEEE
Q 034276 67 VLVNDCDWELSGQLDTTLEEKDVVVFI 93 (99)
Q Consensus 67 ilvNg~di~~l~g~~t~L~dgD~V~i~ 93 (99)
++|||+.+.- ++|++||+|.|=
T Consensus 84 T~vNg~~i~~-----~~L~~GD~I~iG 105 (131)
T 3hx1_A 84 LMINGKKVQE-----HIIQTGDEIVMG 105 (131)
T ss_dssp EEETTEEESE-----EECCTTCEEECS
T ss_pred eEECCEEeEe-----EECCCCCEEEEC
Confidence 6789988753 899999999873
No 114
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=79.97 E-value=4.1 Score=25.13 Aligned_cols=38 Identities=8% Similarity=0.140 Sum_probs=27.2
Q ss_pred eEEEEEcchHh-hhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc
Q 034276 2 QLTLEFGGGLE-LLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL 47 (99)
Q Consensus 2 ~v~V~f~a~l~-~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~ 47 (99)
||+|+|-+.=. ....++ .+-|| ...|+++++..|+++.
T Consensus 5 Kv~v~fk~~g~~P~l~k~---KflVp-----~~~tv~~~~~~lRkrL 43 (91)
T 4gdk_A 5 KIDILLKAVGDTPIMKTK---KWAVE-----RTRTIQGLIDFIKKFL 43 (91)
T ss_dssp EEEEEEEECSSSCCCSCC---EEEEE-----TTCBHHHHHHHHHHHT
T ss_pred eEEEEEEecCCCCccccc---EEEcC-----CCCCHHHHHHHHHHHh
Confidence 68888887422 233332 36788 6799999999998865
No 115
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=79.58 E-value=6.6 Score=27.94 Aligned_cols=64 Identities=14% Similarity=0.159 Sum_probs=44.5
Q ss_pred EEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCC-ccCccCCCCEEEEEecCCC
Q 034276 20 VHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQ-LDTTLEEKDVVVFISTLHG 98 (99)
Q Consensus 20 ~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g-~~t~L~dgD~V~i~p~v~G 98 (99)
++.+.|. ...+++.|+++.+++..-.. ..+-.+-+|+.|.--+- .+--++|||.|.++...-|
T Consensus 68 eV~FKIK-----rtTpL~KLmeAYcERqGL~~-----------~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~G 131 (207)
T 3tix_A 68 EIFFKIK-----KTTPLRRLMEAFAKRQGKEM-----------DSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIG 131 (207)
T ss_dssp EEEEEEE-----TTSCTHHHHHHHHHHTTCCG-----------GGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCT
T ss_pred EEEEEEc-----cCChHHHHHHHHHHHhCCCc-----------ccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 4677787 57899999999998764221 13335557777654322 2337899999999988777
Q ss_pred C
Q 034276 99 G 99 (99)
Q Consensus 99 G 99 (99)
|
T Consensus 132 G 132 (207)
T 3tix_A 132 G 132 (207)
T ss_dssp T
T ss_pred C
Confidence 6
No 116
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=79.47 E-value=9.2 Score=26.83 Aligned_cols=64 Identities=14% Similarity=0.139 Sum_probs=46.0
Q ss_pred EEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCC-ccCccCCCCEEEEEecCCC
Q 034276 20 VHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQ-LDTTLEEKDVVVFISTLHG 98 (99)
Q Consensus 20 ~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g-~~t~L~dgD~V~i~p~v~G 98 (99)
++.+.+. ...+++.|.++.+++..-. ...+-.+-+|++|.--+- .+--+++||.|.++...-|
T Consensus 40 ~v~fkIk-----~~t~l~kL~~ay~er~Gi~-----------~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~g 103 (200)
T 3pge_A 40 EIFFKIK-----KTTPLRRLMEAFAKRQGKE-----------MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 103 (200)
T ss_dssp EEEEEEC-----TTSCTHHHHHHHHHHHSSC-----------GGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSC
T ss_pred EEEEEEe-----cCCHHHHHHHHHHHHhCCC-----------hhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCc
Confidence 4678888 5789999999999876432 224556667877764332 2337899999999988777
Q ss_pred C
Q 034276 99 G 99 (99)
Q Consensus 99 G 99 (99)
|
T Consensus 104 g 104 (200)
T 3pge_A 104 G 104 (200)
T ss_dssp C
T ss_pred C
Confidence 6
No 117
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=78.35 E-value=11 Score=24.30 Aligned_cols=25 Identities=12% Similarity=-0.068 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCCCcchHHHHHHHHHHhcCc
Q 034276 20 VHNVDVVPPKGSEKLIMKDLLSWVGTNLIK 49 (99)
Q Consensus 20 ~~~vev~~~~~~~~~tv~dll~~L~~~~~~ 49 (99)
.++++++ +..||.+|=+.+.+..|.
T Consensus 29 ~~~lev~-----~s~TV~~lK~~I~~~~p~ 53 (125)
T 2gow_A 29 TKEFLFS-----PNDSASDIAKHVYDNWPM 53 (125)
T ss_dssp EEEEEEC-----TTSBHHHHHHHHHSSCCC
T ss_pred EEEEEeC-----CccHHHHHHHHHHHHCCc
Confidence 3578888 678999999999986654
No 118
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=78.32 E-value=1.6 Score=28.43 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=22.3
Q ss_pred EEEcCccceecCCccCccCCCCEEEEEecCC
Q 034276 67 VLVNDCDWELSGQLDTTLEEKDVVVFISTLH 97 (99)
Q Consensus 67 ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~ 97 (99)
.+|||+.+. .+..++|++||+|.|=.+..
T Consensus 77 T~vNg~~l~--~~~~~~L~~GD~I~lG~~~~ 105 (138)
T 2pie_A 77 VWLNRARLE--PLRVYSIHQGDYIQLGVPLE 105 (138)
T ss_dssp EEETTEECC--TTCCEECCTTCEEEESCCCT
T ss_pred eEECCEEcC--CCCcEECCCCCEEEECCCCC
Confidence 688997764 35568999999999976543
No 119
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=78.07 E-value=1.1 Score=28.23 Aligned_cols=21 Identities=24% Similarity=0.223 Sum_probs=17.5
Q ss_pred EEEcCccceecCCccCccCCCCEEEE
Q 034276 67 VLVNDCDWELSGQLDTTLEEKDVVVF 92 (99)
Q Consensus 67 ilvNg~di~~l~g~~t~L~dgD~V~i 92 (99)
.+|||+.+. .++|++||+|.|
T Consensus 75 t~vng~~i~-----~~~L~~gd~i~i 95 (115)
T 2xt9_B 75 TYVNREPVD-----SAVLANGDEVQI 95 (115)
T ss_dssp EEETTEECS-----EEEECTTCEEEE
T ss_pred eEECCEEcc-----eEECCCCCEEEE
Confidence 578998875 479999999987
No 120
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=77.84 E-value=0.97 Score=29.85 Aligned_cols=27 Identities=11% Similarity=0.030 Sum_probs=21.1
Q ss_pred EEEcCccceecCCccCccCCCCEEEEEec
Q 034276 67 VLVNDCDWELSGQLDTTLEEKDVVVFIST 95 (99)
Q Consensus 67 ilvNg~di~~l~g~~t~L~dgD~V~i~p~ 95 (99)
.+|||+.+. .+..++|++||+|.|-.+
T Consensus 105 T~VNg~~i~--~~~~~~L~~GD~I~lG~~ 131 (149)
T 1gxc_A 105 TFVNTELVG--KGKRRPLNNNSEIALSLS 131 (149)
T ss_dssp EEETTEECC--TTCEEECCTTEEEEESST
T ss_pred eEECCEECC--CCCeEECCCCCEEEECCC
Confidence 688998764 355789999999998653
No 121
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=77.80 E-value=0.93 Score=28.55 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=18.7
Q ss_pred EEEcCccceecCCccCccCCCCEEEE
Q 034276 67 VLVNDCDWELSGQLDTTLEEKDVVVF 92 (99)
Q Consensus 67 ilvNg~di~~l~g~~t~L~dgD~V~i 92 (99)
.+|||+.+. .+..++|++||+|.|
T Consensus 78 T~vng~~l~--~~~~~~L~~gd~i~l 101 (118)
T 1uht_A 78 TLLNSNALD--PETSVNLGDGDVIKL 101 (118)
T ss_dssp CEESSSBCC--TTCEEECCTTEEEEE
T ss_pred eEECCEECC--CCCeEEcCCCCEEEE
Confidence 577998764 345679999999987
No 122
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=77.44 E-value=2.8 Score=29.22 Aligned_cols=50 Identities=14% Similarity=0.052 Sum_probs=36.9
Q ss_pred EEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEe
Q 034276 23 VDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIS 94 (99)
Q Consensus 23 vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p 94 (99)
.++| .++|+.|+...+..... +.-+...|||+-|+ ++++|++|+.|.|+.
T Consensus 12 ~~~~-----~g~T~~dia~~i~~~l~-------------~~~vaakvNg~l~d----L~~~l~~~~~ve~it 61 (224)
T 1tke_A 12 RHYD-----HAVSPMDVALDIGPGLA-------------KACIAGRVNGELVD----ACDLIENDAQLSIIT 61 (224)
T ss_dssp EECS-----SCBCHHHHHHHHCHHHH-------------HHCCEEEETTEEEE----TTCCBCSCEEEEEEC
T ss_pred EEec-----CCCCHHHHHHHHhhhcc-------------cceEEEEECCEEec----cceEcCCCCeEEEEe
Confidence 5677 78999999887744211 22455778998775 479999999999875
No 123
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=77.24 E-value=1 Score=28.20 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=20.7
Q ss_pred EEEcCccceecCCccCccCCCCEEEEEec
Q 034276 67 VLVNDCDWELSGQLDTTLEEKDVVVFIST 95 (99)
Q Consensus 67 ilvNg~di~~l~g~~t~L~dgD~V~i~p~ 95 (99)
++|||+.+. .+..++|++||+|.|=++
T Consensus 70 t~vng~~l~--~~~~~~L~~GD~i~~G~~ 96 (116)
T 1lgp_A 70 TVINKLKVV--KKQTCPLQTGDVIYLVYR 96 (116)
T ss_dssp CCCCCCCCC--CSSCCCCCTTCEEEEECC
T ss_pred cEECCEEcC--CCCcEECCCCCEEEEecc
Confidence 467887664 345689999999999764
No 124
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=76.79 E-value=0.5 Score=33.16 Aligned_cols=69 Identities=13% Similarity=0.074 Sum_probs=0.0
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|.|+... |. .+.++++ +..||.+|=+.+.+.. |....+|+. +|+-.+ +
T Consensus 1 MqI~VKtL~------Gk--titLeV~-----~sdTV~~LK~kI~~keGIP~~qQRLIf-------------~GK~Le--D 52 (189)
T 2xzm_9 1 MQVQVKTLE------GE--TKIYTLE-----QGTSVLDLKSQISQDMGFEIDMMTLVN-------------NGFIAP--N 52 (189)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEcCC------CC--EEEEEEC-----CcChHHHHHHHHHHHhCcChhHEEEEe-------------cCeECC--C
Confidence 777777543 32 3456776 5678888888877653 222223322 222111 1
Q ss_pred CccCccCCCCEEEEEecCCCC
Q 034276 79 QLDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 79 g~~t~L~dgD~V~i~p~v~GG 99 (99)
+..|.+++.|.++..+.||
T Consensus 53 --~~TLs~~STLhLvlRLrGG 71 (189)
T 2xzm_9 53 --TELVTDDVTYYLSLKLLGG 71 (189)
T ss_dssp ---------------------
T ss_pred --CCcccCCCEEEEEEecCCC
Confidence 2233477788887777665
No 125
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=76.33 E-value=1.6 Score=26.97 Aligned_cols=56 Identities=9% Similarity=0.128 Sum_probs=33.5
Q ss_pred EEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEE
Q 034276 21 HNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFI 93 (99)
Q Consensus 21 ~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~ 93 (99)
..++++ ...||.+|-+.+++.. |..+.+|+. .|+ +|-+++. | .++-+++|+.|.++
T Consensus 40 ~~l~v~-----~~~TV~~LK~~I~~~~gip~~~QrLi~-~Gk------~L~D~~t---L--~~~gI~~g~tI~lv 97 (101)
T 3m63_B 40 WEVNVA-----PESTVLQFKEAINKANGIPVANQRLIY-SGK------ILKDDQT---V--ESYHIQDGHSVHLV 97 (101)
T ss_dssp CCBCCC-----TTSBHHHHHHHHHHHHSCCSTTCCEEE-TTE------ECCTTSB---T--TTTTCCTTEEEEEC
T ss_pred EEEEeC-----CCCCHHHHHHHHHHHHCcChHHEEEEE-CCE------ECCCcCc---H--HHCCCCCCCEEEEE
Confidence 356666 5789999999998776 222333432 222 2222222 2 24678899998876
No 126
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=75.48 E-value=1.7 Score=26.13 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=18.6
Q ss_pred EEEcCccceecCCccCccCCCCEEEEE
Q 034276 67 VLVNDCDWELSGQLDTTLEEKDVVVFI 93 (99)
Q Consensus 67 ilvNg~di~~l~g~~t~L~dgD~V~i~ 93 (99)
|.|||+-+ ...+.|+.||.|.|.
T Consensus 28 V~VNg~~~----~~~~~v~~gd~I~v~ 50 (92)
T 2k6p_A 28 VWLNGSCA----KASKEVKAGDTISLH 50 (92)
T ss_dssp CEETTEEC----CTTCBCCTTCEEEEC
T ss_pred EEECCEEc----CCCCCcCCCCEEEEE
Confidence 78999864 247899999999884
No 127
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=75.36 E-value=0.9 Score=28.13 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=17.3
Q ss_pred EEEcCccceecCCccCccCCCCEEEE
Q 034276 67 VLVNDCDWELSGQLDTTLEEKDVVVF 92 (99)
Q Consensus 67 ilvNg~di~~l~g~~t~L~dgD~V~i 92 (99)
.+|||+.+.. .++|++||+|.|
T Consensus 71 t~vng~~i~~----~~~L~~Gd~i~~ 92 (106)
T 3gqs_A 71 VIVEGRKIEH----QSTLSANQVVAL 92 (106)
T ss_dssp CEETTEECSS----EEECCTTCCEEE
T ss_pred eEECCEECCC----CeECCCCCEEEE
Confidence 5779988753 468999999986
No 128
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=75.36 E-value=1.2 Score=29.37 Aligned_cols=25 Identities=24% Similarity=0.318 Sum_probs=19.5
Q ss_pred EEEcCccceecCCccCccCCCCEEEEEe
Q 034276 67 VLVNDCDWELSGQLDTTLEEKDVVVFIS 94 (99)
Q Consensus 67 ilvNg~di~~l~g~~t~L~dgD~V~i~p 94 (99)
.+|||+.+. .+ .++|++||+|.|=.
T Consensus 89 T~VNg~~i~--~~-~~~L~~GD~I~lG~ 113 (151)
T 2jqj_A 89 TFINGNRLV--KK-DYILKNGDRIVFGK 113 (151)
T ss_dssp EEETTEECC--SS-CEEECSSEEEEETT
T ss_pred eEECCEEcC--CC-ceECCCCCEEEECC
Confidence 688998874 33 68999999998743
No 129
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=74.42 E-value=1.8 Score=29.31 Aligned_cols=21 Identities=24% Similarity=0.223 Sum_probs=17.6
Q ss_pred EEEcCccceecCCccCccCCCCEEEE
Q 034276 67 VLVNDCDWELSGQLDTTLEEKDVVVF 92 (99)
Q Consensus 67 ilvNg~di~~l~g~~t~L~dgD~V~i 92 (99)
.+|||+.+. ..+|++||+|.|
T Consensus 119 T~VNg~~i~-----~~~L~~GD~I~i 139 (162)
T 2kfu_A 119 TYVNREPVD-----SAVLANGDEVQI 139 (162)
T ss_dssp EEETTBCCS-----EEECCSSCEEEE
T ss_pred eEECCEEcc-----eEECCCCCEEEE
Confidence 678998875 479999999987
No 130
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=74.26 E-value=2.1 Score=28.10 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=21.5
Q ss_pred EEEcCccceecCCccCccCCCCEEEEEec
Q 034276 67 VLVNDCDWELSGQLDTTLEEKDVVVFIST 95 (99)
Q Consensus 67 ilvNg~di~~l~g~~t~L~dgD~V~i~p~ 95 (99)
.+|||+.+.. +..++|++||+|.|=.+
T Consensus 85 T~vNg~~i~~--~~~~~L~~GD~I~iG~~ 111 (145)
T 2csw_A 85 VWLNRARLEP--LRVYSIHQGDYIQLGVP 111 (145)
T ss_dssp EEESSCBCCB--TCCEECCSSCCEEESCC
T ss_pred eEECCEECCC--CccEECCCCCEEEECCC
Confidence 6889988753 45689999999999664
No 131
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=73.82 E-value=19 Score=25.25 Aligned_cols=61 Identities=10% Similarity=0.074 Sum_probs=36.0
Q ss_pred EEEEeCCCCCCC-cchHHHHHHHHHHh-cCcccccccccCCccccce----EEEEcCccceecCCccCccCC--CCEEEE
Q 034276 21 HNVDVVPPKGSE-KLIMKDLLSWVGTN-LIKERPEMFMKGDSVRPGV----LVLVNDCDWELSGQLDTTLEE--KDVVVF 92 (99)
Q Consensus 21 ~~vev~~~~~~~-~~tv~dll~~L~~~-~~~~~~~l~~~~g~l~~~v----~ilvNg~di~~l~g~~t~L~d--gD~V~i 92 (99)
.+++++ + +.||-|+|..+... .|.+... . + -+.++ .+.|||+.+.. =.|++.+ |+.+.|
T Consensus 33 ~~v~~~-----~~~~tlLd~l~~~~~~~~p~l~~~---~-~-c~~g~Cg~C~v~i~G~~~~a---C~~~~~~~~g~~~~i 99 (252)
T 2h88_B 33 YEVDLN-----KCGPMVLDALIKIKNELDSTLTFR---R-S-CREGICGSCAMNIAGGNTLA---CTKKIDPDLSKTTKI 99 (252)
T ss_dssp EEEEGG-----GSCSBHHHHHHHHHHHTCTTCCCC---C-S-CSSSSSCTTEEEETTEEEEG---GGSBCCCCTTSCEEE
T ss_pred EEEecC-----CCCChHHHHHHHhCcccCCCcccc---C-C-CCCCCCCCCEEEECCcEEcc---ccCCHhHcCCCceEE
Confidence 456665 5 89999999988753 3433211 1 1 13344 67899986543 2456665 555665
Q ss_pred Ee
Q 034276 93 IS 94 (99)
Q Consensus 93 ~p 94 (99)
-|
T Consensus 100 ep 101 (252)
T 2h88_B 100 YP 101 (252)
T ss_dssp EC
T ss_pred ec
Confidence 54
No 132
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=73.59 E-value=1.3 Score=29.94 Aligned_cols=21 Identities=24% Similarity=0.367 Sum_probs=17.6
Q ss_pred EEEcCccceecCCccCccCCCCEEEE
Q 034276 67 VLVNDCDWELSGQLDTTLEEKDVVVF 92 (99)
Q Consensus 67 ilvNg~di~~l~g~~t~L~dgD~V~i 92 (99)
++|||+.+. .++|++||+|.|
T Consensus 129 T~VNG~~i~-----~~~L~~GD~I~l 149 (157)
T 3oun_A 129 TTVNNAPVQ-----EWQLADGDVIRL 149 (157)
T ss_dssp CEETTEECS-----EEECCTTCEEEE
T ss_pred eEECCEECc-----eEECCCCCEEEE
Confidence 577998875 479999999987
No 133
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=72.53 E-value=7.4 Score=22.88 Aligned_cols=58 Identities=14% Similarity=0.170 Sum_probs=34.9
Q ss_pred EEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEe
Q 034276 20 VHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIS 94 (99)
Q Consensus 20 ~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p 94 (99)
...++++ ...||.+|-+.+.+.. |..+.+|+. .|+ +|-++ ..| .++.+++|+.|.++-
T Consensus 23 ~~~l~v~-----~~~TV~~LK~~I~~~~gip~~~qrL~~-~Gk------~L~D~---~tL--~~~gi~~g~~l~l~~ 82 (85)
T 2kd0_A 23 SIPLSVS-----PDCTVKDLKSQLQPITNVLPRGQKLIF-KGK------VLVET---STL--KQSDVGSGAKLMLMA 82 (85)
T ss_dssp EEEEEEC-----TTSBHHHHHHHHHHHHCCCTTTCEEEE-TTE------ECCTT---CBT--TTTTCCTTEEEEEEC
T ss_pred EEEEEEC-----CCCcHHHHHHHHHHHHCcChHHEEEEE-CCe------ECCCc---CCH--HHCCCCCCCEEEEEE
Confidence 3567888 5789999999998765 333333432 222 12122 222 246788999988764
No 134
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=72.37 E-value=9 Score=23.59 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=17.2
Q ss_pred EEEeCCCCCCCcchHHHHHHHHHHhcC
Q 034276 22 NVDVVPPKGSEKLIMKDLLSWVGTNLI 48 (99)
Q Consensus 22 ~vev~~~~~~~~~tv~dll~~L~~~~~ 48 (99)
.++++. +..||.+|.+.|.++.+
T Consensus 20 ~v~v~~----~~~Tv~~LK~kI~~~~g 42 (107)
T 1wf9_A 20 RVSVDG----PHITVSQLKTLIQDQLQ 42 (107)
T ss_dssp EEEECC----TTSBHHHHHHHHHHHSC
T ss_pred EEEECC----CCCcHHHHHHHHHHHhC
Confidence 366661 25899999999998764
No 135
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=72.28 E-value=1.2 Score=29.44 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=17.2
Q ss_pred EEEcCccceecCCccCccCCCCEEEE
Q 034276 67 VLVNDCDWELSGQLDTTLEEKDVVVF 92 (99)
Q Consensus 67 ilvNg~di~~l~g~~t~L~dgD~V~i 92 (99)
.+|||+.+. ..+|++||+|.|
T Consensus 110 T~VNg~~i~-----~~~L~~GD~I~i 130 (143)
T 2kb3_A 110 TYVNREPRN-----AQVMQTGDEIQI 130 (143)
T ss_dssp CEETTEECS-----EEECCTTEEEEE
T ss_pred eEECCEEcc-----eEECCCCCEEEE
Confidence 467988775 479999999987
No 136
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=71.54 E-value=10 Score=29.31 Aligned_cols=67 Identities=12% Similarity=-0.055 Sum_probs=44.3
Q ss_pred EEEEeCCCCCCCcchHHHHHHHHHHhcCcccccc-------cc-------cCCccccceEEEEcCccceecCCccCccCC
Q 034276 21 HNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEM-------FM-------KGDSVRPGVLVLVNDCDWELSGQLDTTLEE 86 (99)
Q Consensus 21 ~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l-------~~-------~~g~l~~~v~ilvNg~di~~l~g~~t~L~d 86 (99)
..|.+| +|+|+-++++...+..|.+.-.. |. .+-+=+-|-..++||+.... +-.++.+++
T Consensus 315 ~~Vtv~-----~gssll~vLk~a~e~n~~F~F~~~e~~~G~fItSInG~~~~~~~~~YW~l~~~g~~~~~-G~~~y~~~~ 388 (399)
T 2pmv_A 315 INVSVK-----SGSVLLVVLEEAQRKNPMFKFETTMTSWGLVVSSINNIAENVNHKTYWQFLSGVTPLNE-GVADYIPFN 388 (399)
T ss_dssp EEEESS-----SCSCHHHHHHHHHHSCCSCCEEEEEETTEEEEEEESSCBCCGGGTEEEEEEETTEECSS-CTTTCCCCT
T ss_pred eEEEec-----CCCCHHHHHHHHHHhCcCCceEEeecCCCceEEeECCCccCcCCCeeEEEEECCeeccc-chhheecCC
Confidence 368888 79999999999998866553221 10 01113345667777655432 455679999
Q ss_pred CCEEEEE
Q 034276 87 KDVVVFI 93 (99)
Q Consensus 87 gD~V~i~ 93 (99)
||.|.|-
T Consensus 389 gd~I~f~ 395 (399)
T 2pmv_A 389 HEHITAN 395 (399)
T ss_dssp TCEEEEE
T ss_pred CCEEEEE
Confidence 9999874
No 137
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=71.08 E-value=13 Score=22.95 Aligned_cols=54 Identities=11% Similarity=0.089 Sum_probs=37.8
Q ss_pred EEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccC----ccCCCCEEEEE
Q 034276 21 HNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDT----TLEEKDVVVFI 93 (99)
Q Consensus 21 ~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t----~L~dgD~V~i~ 93 (99)
+.+.+. ...+++-|+++.+++..-. ...+-.+.+|+.|.. .+| -++|||.|.++
T Consensus 39 v~fkIk-----~~t~l~kLm~aY~~~~g~~-----------~~~vrF~FDG~rI~~---~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 39 LEVSLS-----RDSPLKTLMSHYEEAMGLS-----------GRKLSFFFDGTKLSG---RELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEE-----TTSCHHHHHHHHHHHTTCS-----------SSCCEEEETTEECCS---CSCHHHHTCCTTEEEEEE
T ss_pred EEEEEC-----CCChHHHHHHHHHHHHCCC-----------cccEEEEECCEEcCC---CCCHHHcCCCCCCEEEEe
Confidence 456666 4678999999998865421 124557778877643 455 58999999876
No 138
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=70.92 E-value=1.2 Score=28.48 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=17.7
Q ss_pred EEEcCccceecCCccCccCCCCEEEE
Q 034276 67 VLVNDCDWELSGQLDTTLEEKDVVVF 92 (99)
Q Consensus 67 ilvNg~di~~l~g~~t~L~dgD~V~i 92 (99)
++|||+.+. ..++|++||+|.|
T Consensus 77 t~vNg~~i~----~~~~L~~Gd~i~i 98 (128)
T 1r21_A 77 TQVNGSVID----EPVRLKHGDVITI 98 (128)
T ss_dssp CEETTEECS----SCEECCTTEEEEC
T ss_pred EEECCEECC----CcEEcCCCCEEEE
Confidence 577998875 2579999999986
No 139
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=70.66 E-value=1.4 Score=29.54 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=19.9
Q ss_pred EEEcCccceecCCccCccCCCCEEEEE
Q 034276 67 VLVNDCDWELSGQLDTTLEEKDVVVFI 93 (99)
Q Consensus 67 ilvNg~di~~l~g~~t~L~dgD~V~i~ 93 (99)
.+|||+.+. .+..++|++||+|.|+
T Consensus 85 T~VNg~ri~--~~~~~~L~~GD~I~l~ 109 (158)
T 1dmz_A 85 SYLNNNRMI--QGTKFLLQDGDEIKII 109 (158)
T ss_dssp CEETTEECC--SSEEEECCSSCCEESC
T ss_pred eEECCEEcC--CCceEEcCCCCEEEEe
Confidence 478998874 3556899999999983
No 140
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=70.06 E-value=5 Score=24.67 Aligned_cols=40 Identities=25% Similarity=0.348 Sum_probs=27.8
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCccccc
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPE 53 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~ 53 (99)
|||||.|- ..+ +-||= +....||++|++.-..+|-...+.
T Consensus 3 MKvtV~fg--------~~~---vvVPC--~dg~~tV~~L~~~A~~RY~K~~~k 42 (85)
T 2ns5_A 3 FKVTVCFG--------RTR---VDVPC--GDGRMKVFSLIQQAVTRYRKAVAK 42 (85)
T ss_dssp EEEEEEET--------TEE---EEEEE--SSSCCCHHHHHHHHHHHHHHHTTC
T ss_pred cEEEEEEC--------CEE---EEEEC--CCCcccHHHHHHHHHHHHHHhcCC
Confidence 88999875 344 55772 013459999999999998655443
No 141
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=70.00 E-value=4.1 Score=26.54 Aligned_cols=23 Identities=13% Similarity=0.031 Sum_probs=18.8
Q ss_pred EEEcCccceecCCccCccCCCCEEEEE
Q 034276 67 VLVNDCDWELSGQLDTTLEEKDVVVFI 93 (99)
Q Consensus 67 ilvNg~di~~l~g~~t~L~dgD~V~i~ 93 (99)
|.|||+.+ ...+.|+.||+|.|.
T Consensus 36 V~VNG~~v----k~s~~V~~GD~I~I~ 58 (133)
T 1dm9_A 36 VHYNGQRS----KPSKIVELNATLTLR 58 (133)
T ss_dssp EEETTEEC----CTTCBCCTTCEEEEE
T ss_pred EEECCEEc----CCCCEeCCCCEEEEE
Confidence 78999865 246899999999885
No 142
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=69.66 E-value=11 Score=22.23 Aligned_cols=74 Identities=16% Similarity=0.258 Sum_probs=39.4
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSG 78 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~ 78 (99)
|+|+|+.. |+ .++++++...+....||.+|-+.|.+.. |..+.+|+.. |+ .|-| .+- .|
T Consensus 8 ~~v~Vk~~-------~~--~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~-Gk------~L~D-~~~-~L- 68 (92)
T 1wxv_A 8 LTVTVTHS-------NE--KHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFK-GK------SLKE-MET-PL- 68 (92)
T ss_dssp EEEEEECS-------SS--EEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEET-TE------EECC-SSS-BH-
T ss_pred EEEEEEEC-------CE--EEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEEC-Ce------ecCC-Ccc-cH-
Confidence 56777763 22 3467887300000489999999998765 3333344322 22 1212 110 11
Q ss_pred CccCccCCCCEEEEEe
Q 034276 79 QLDTTLEEKDVVVFIS 94 (99)
Q Consensus 79 g~~t~L~dgD~V~i~p 94 (99)
.++.+++|+.|.++-
T Consensus 69 -~~~~i~~g~~i~l~~ 83 (92)
T 1wxv_A 69 -SALGIQDGCRVMLIG 83 (92)
T ss_dssp -HHHTCCSSEEEEEES
T ss_pred -HHCCCCCCCEEEEEe
Confidence 234678898887764
No 143
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=69.50 E-value=16 Score=22.97 Aligned_cols=65 Identities=9% Similarity=-0.005 Sum_probs=39.4
Q ss_pred hhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecCCccCcc-CCCC
Q 034276 12 ELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTL-EEKD 88 (99)
Q Consensus 12 ~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L-~dgD 88 (99)
+.+-+.+..+.++++ +..||.+|=+.+.+++ |....+++. .++ ++-+++.+ .++-+ ++|+
T Consensus 30 ~d~~s~~~~i~l~V~-----ps~TV~~LK~~I~~k~Gipp~~QRli~-ggk------ll~D~~TL-----~~ygI~~~G~ 92 (105)
T 4dbg_A 30 EDAQMHTVTIWLTVR-----PDMTVASLKDMVFLDYGFPPVLQQWVI-GQR------LARDQETL-----HSHGVRQNGD 92 (105)
T ss_dssp EESSSCCEEEEEEEC-----TTCBHHHHHHHHHHHHCCCGGGEEEEE-TTE------EECTTCBT-----GGGTCCSTTC
T ss_pred EccCCCCceEEEEEC-----CcChHHHHHHHHHHHhCCCHHHEEEec-cCe------EccCcCcH-----HHcCCCCCCC
Confidence 344433345788888 5789999999998877 332333432 222 22333332 35788 5999
Q ss_pred EEEEE
Q 034276 89 VVVFI 93 (99)
Q Consensus 89 ~V~i~ 93 (99)
.+.++
T Consensus 93 t~hL~ 97 (105)
T 4dbg_A 93 SAYLY 97 (105)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88765
No 144
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=69.01 E-value=9.5 Score=28.42 Aligned_cols=58 Identities=5% Similarity=0.111 Sum_probs=35.0
Q ss_pred EEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEe
Q 034276 20 VHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIS 94 (99)
Q Consensus 20 ~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p 94 (99)
.+.++++ ...||.+|-+.|.+.. |..+.+|+.. |+ +|-+++. | .++.+++|+.|.++-
T Consensus 245 ~~~leV~-----~s~TV~dLK~kI~~~~GIp~~~QRLi~~-Gk------~L~D~~T---L--sdygI~~gstL~Lvl 304 (307)
T 3ai5_A 245 TITLEVE-----PSDTIENVKAKIQDKEGIPPDQQRLIFA-GK------QLEDGRT---L--SDYNIQKESTLHLVL 304 (307)
T ss_dssp EEEEEEC-----TTCBHHHHHHHHHHHHCCCGGGCEEEET-TE------ECCTTSB---T--GGGTCCTTCEEEEEC
T ss_pred EEEEEEC-----CCCcHHHHHHHHHHHHCcChHHEEEEeC-Ce------ecCCCCC---H--HHcCCCCCCEEEEEE
Confidence 3567787 5789999999988765 3333334322 22 1222222 2 256788999998764
No 145
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=68.88 E-value=4.5 Score=27.10 Aligned_cols=27 Identities=7% Similarity=0.140 Sum_probs=21.2
Q ss_pred EEEcCccceecCCccCccCCCCEEEEEecC
Q 034276 67 VLVNDCDWELSGQLDTTLEEKDVVVFISTL 96 (99)
Q Consensus 67 ilvNg~di~~l~g~~t~L~dgD~V~i~p~v 96 (99)
|.|||+-+.. ..+.+++||.|.+-.+.
T Consensus 78 V~VNG~~v~~---ps~~V~~gD~I~V~~~~ 104 (159)
T 1c05_A 78 ILVDGSRVNI---PSYRVKPGQTIAVREKS 104 (159)
T ss_dssp EEETTEECCC---SSCBCCTTCEEEECGGG
T ss_pred EEECCEEeCc---CCcEeCCCCEEEEeCce
Confidence 8899987643 46899999999996553
No 146
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=68.80 E-value=20 Score=22.93 Aligned_cols=60 Identities=13% Similarity=0.003 Sum_probs=40.8
Q ss_pred EEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCC-ccCccCCCCEEEEEec
Q 034276 20 VHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQ-LDTTLEEKDVVVFIST 95 (99)
Q Consensus 20 ~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g-~~t~L~dgD~V~i~p~ 95 (99)
++.+.+. ...+++.|.++.+++..-. ...+-.+-+|+.|.--+- .+--++|||.|.++..
T Consensus 52 ev~fkIk-----~tt~L~KLm~aY~er~Gl~-----------~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~ 112 (115)
T 3kyd_D 52 EIHFKVK-----MTTHLKKLKESYCQRQGVP-----------MNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 112 (115)
T ss_dssp EEEEEEE-----TTSCTHHHHHHHHHHHTCC-----------TTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEEC
T ss_pred EEEEEEc-----cCChHHHHHHHHHHHhCCC-----------hhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEee
Confidence 3567777 5688999999999876421 225556667777654321 2336899999998864
No 147
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=67.76 E-value=1.7 Score=29.85 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=20.1
Q ss_pred EEEcCccceecCCccCccCCCCEEEEE
Q 034276 67 VLVNDCDWELSGQLDTTLEEKDVVVFI 93 (99)
Q Consensus 67 ilvNg~di~~l~g~~t~L~dgD~V~i~ 93 (99)
.+|||+.+. .+..++|++||+|.|+
T Consensus 109 T~VNg~ri~--~~~~~~L~~GD~I~l~ 133 (182)
T 1qu5_A 109 SYLNNNRMI--QGTKFLLQDGDEIKII 133 (182)
T ss_dssp CEETTEECC--SSEEEECCTTBCCEEE
T ss_pred eEECCEEcC--CCcceEcCCCCEEEEE
Confidence 578998874 3556899999999994
No 148
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=67.56 E-value=2.2 Score=26.91 Aligned_cols=27 Identities=11% Similarity=0.225 Sum_probs=20.4
Q ss_pred EEcCccceecCCccCccCCCCEEEEEecC
Q 034276 68 LVNDCDWELSGQLDTTLEEKDVVVFISTL 96 (99)
Q Consensus 68 lvNg~di~~l~g~~t~L~dgD~V~i~p~v 96 (99)
.+||+.+ -.+..+.|++||.+.++|-.
T Consensus 67 ~vng~~l--~k~~~~~L~~GD~l~Ll~~~ 93 (102)
T 3kt9_A 67 SIDSVVI--GKDQEVKLQPGQVLHMVNEL 93 (102)
T ss_dssp EETTEEC--CBTCEEEECTTCCEEEETTE
T ss_pred eECCEEc--CCCCeEEeCCCCEEEEccCC
Confidence 4577544 35778899999999998753
No 149
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=67.50 E-value=3.2 Score=27.82 Aligned_cols=27 Identities=15% Similarity=0.085 Sum_probs=20.6
Q ss_pred EEEcCccceecCCccCccCCCCEEEEEec
Q 034276 67 VLVNDCDWELSGQLDTTLEEKDVVVFIST 95 (99)
Q Consensus 67 ilvNg~di~~l~g~~t~L~dgD~V~i~p~ 95 (99)
.+|||+.+. .+..++|++||+|.|=.+
T Consensus 109 T~vNg~~i~--~~~~~~L~~GD~I~iG~~ 135 (164)
T 1g3g_A 109 TWLNGQKVE--KNSNQLLSQGDEITVGVG 135 (164)
T ss_dssp EEETTEEEC--TTEEEECCTTCEEEESCS
T ss_pred eEECCEEcC--CCCceEcCCCCEEEECCC
Confidence 688998764 345689999999988553
No 150
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=67.49 E-value=9.4 Score=23.42 Aligned_cols=77 Identities=10% Similarity=0.048 Sum_probs=39.8
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCC---CCCC-cchHHHHHHHHHHhcC----ccc-ccccccCCccccceEEEEcC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPP---KGSE-KLIMKDLLSWVGTNLI----KER-PEMFMKGDSVRPGVLVLVND 71 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~---~~~~-~~tv~dll~~L~~~~~----~~~-~~l~~~~g~l~~~v~ilvNg 71 (99)
|+|+|+..++ + . . +.+.++++.. +-.. ..||.+|=+.+.+..| ... .+|+. .|+ +|-|+
T Consensus 13 ~~i~Vk~~~~-~-~-~--~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~-~Gk------~L~D~ 80 (107)
T 1x1m_A 13 WHLAVKLADQ-P-L-A--PKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIY-CGR------KLKDD 80 (107)
T ss_dssp CCEEEEETTC-T-T-S--CCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEE-TTE------ECCTT
T ss_pred eEEEEEeCCC-C-C-c--cEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEE-CCe------ECCCC
Confidence 6778886543 0 0 0 1245665510 0002 3899999999988763 112 22322 122 12222
Q ss_pred ccceecCCccCccCCCCEEEEEe
Q 034276 72 CDWELSGQLDTTLEEKDVVVFIS 94 (99)
Q Consensus 72 ~di~~l~g~~t~L~dgD~V~i~p 94 (99)
+.+ .++.+++|+.|.++-
T Consensus 81 ~tL-----~~y~i~~g~~i~lv~ 98 (107)
T 1x1m_A 81 QTL-----DFYGIQPGSTVHVLR 98 (107)
T ss_dssp CBH-----HHHTCCTTCEEEEEE
T ss_pred CcH-----HHcCCCCCCEEEEEe
Confidence 222 245688999988763
No 151
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=67.40 E-value=3.6 Score=26.20 Aligned_cols=28 Identities=14% Similarity=0.104 Sum_probs=21.1
Q ss_pred EEEcCccceecCCccCccCCCCEEEEEecC
Q 034276 67 VLVNDCDWELSGQLDTTLEEKDVVVFISTL 96 (99)
Q Consensus 67 ilvNg~di~~l~g~~t~L~dgD~V~i~p~v 96 (99)
.+|||+.+. .+..++|++||.|.|=.+.
T Consensus 81 T~vNg~~l~--~~~~~~L~~Gd~I~lG~~~ 108 (127)
T 1g6g_A 81 TWLNGQKVE--KNSNQLLSQGDEITVGVGV 108 (127)
T ss_dssp CEETTEECC--TTCCEECCTTCEEEECTTS
T ss_pred eEECCEEcC--CCCeEEcCCCCEEEECCCc
Confidence 578997764 3456899999999986553
No 152
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=66.68 E-value=22 Score=22.59 Aligned_cols=37 Identities=14% Similarity=0.048 Sum_probs=26.3
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcc
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKE 50 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~ 50 (99)
|+|+|+... |+ .++++++ ...||.+|=+.+.++.|..
T Consensus 17 m~I~vKtl~------G~--t~~lev~-----~s~TV~~lK~kI~~~~p~d 53 (116)
T 1wgh_A 17 INLRLILVS------GK--TKEFLFS-----PNDSASDIAKHVYDNWPMD 53 (116)
T ss_dssp EEEEEECSS------SC--EEEEEEC-----TTCBHHHHHHHHHHSSSCC
T ss_pred EEEEEEeCC------CC--EEEEEEC-----CcCHHHHHHHHHHHhcccc
Confidence 456666543 42 4578888 5789999999999876543
No 153
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=66.14 E-value=16 Score=27.15 Aligned_cols=31 Identities=16% Similarity=0.110 Sum_probs=21.4
Q ss_pred EEEEEeCCCCCCCcchHHHHHHHHHHhc--Cccccccc
Q 034276 20 VHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMF 55 (99)
Q Consensus 20 ~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~ 55 (99)
+++++++ ...||.+|=+.|.+.. |..+.+|.
T Consensus 16 ~~~v~v~-----~~~Tv~~lK~~I~~~tgVpp~~QkLi 48 (320)
T 3shq_A 16 EYPVDLT-----DQDTVEVLRHEIFRKTQVRPERQKLL 48 (320)
T ss_dssp EEEEEEE-----TTSBHHHHHHHHHHHHCCCGGGCEET
T ss_pred EEEEEEC-----CCCcHHHHHHHHHHHHCcCHHHeEEe
Confidence 4678888 5789999888887665 44444444
No 154
>3kwl_A Uncharacterized protein; putative oxidoreductase, multidomain, unknown function; 1.94A {Helicobacter pylori}
Probab=66.00 E-value=6 Score=31.18 Aligned_cols=73 Identities=14% Similarity=0.062 Sum_probs=41.5
Q ss_pred CeEEEEEcchHhhhcC-CeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCC
Q 034276 1 MQLTLEFGGGLELLCD-SVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQ 79 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g-~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g 79 (99)
|+++++.+-. ..-.+ +..-.+++|+.+ ++.||-|+|.++. .+. |.. .--+.|||+..-.
T Consensus 23 ~~~~~~i~R~-~p~~~~~p~~~~y~v~~~---~~~~vLd~L~~ik----~l~---fr~------sCam~ING~~~la--- 82 (514)
T 3kwl_A 23 LKLHVKVFRF-ETNKDYNPAYESYFLEYQ---EDQYLLDLLKQLK----GVS---YSE------NIALKINQIAVFE--- 82 (514)
T ss_dssp CEEEEEEEEC-BTTSCSCCEEEEEEEECC---TTCBHHHHHTTST----TCC---CCS------SCCEEETTEEECS---
T ss_pred eEEEEEEEEe-CCCCCCCCceEEEEEeCC---CCCcHHHHHHHhh----hCe---eec------cceEEECCEehhh---
Confidence 4566666631 21122 122234555421 6789999998887 221 211 3458899988532
Q ss_pred ccCccCC-----CCEEEEEe
Q 034276 80 LDTTLEE-----KDVVVFIS 94 (99)
Q Consensus 80 ~~t~L~d-----gD~V~i~p 94 (99)
.|.+++ |+.|.|-|
T Consensus 83 -~t~~~~~~~~~~~~i~ieP 101 (514)
T 3kwl_A 83 -DAKVSDLVAFFSKEWVLDP 101 (514)
T ss_dssp -CCBHHHHHHHHCSEEEEEC
T ss_pred -hhhHHHHhhccCCcEEEEE
Confidence 566654 78898877
No 155
>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP}
Probab=65.47 E-value=8.8 Score=22.10 Aligned_cols=26 Identities=15% Similarity=0.037 Sum_probs=18.7
Q ss_pred EEcCccceecCCccCccCCCCEEEEEec
Q 034276 68 LVNDCDWELSGQLDTTLEEKDVVVFIST 95 (99)
Q Consensus 68 lvNg~di~~l~g~~t~L~dgD~V~i~p~ 95 (99)
.-+++-+ ....+|.|++||.+.++-+
T Consensus 47 ~R~~~~~--~p~~~~~l~~GD~l~v~g~ 72 (86)
T 3jxo_A 47 VRGGVLV--VPRGDTEILSGDKLYVIVS 72 (86)
T ss_dssp EETTEEE--CCCTTCBCCTTCEEEEEEE
T ss_pred EECCEEE--CCCCCCEECCCCEEEEEEC
Confidence 3355444 3567999999999998754
No 156
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=64.43 E-value=2.7 Score=27.27 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=19.5
Q ss_pred EEEcCccceec------CCccCccCCCCEEEE
Q 034276 67 VLVNDCDWELS------GQLDTTLEEKDVVVF 92 (99)
Q Consensus 67 ilvNg~di~~l------~g~~t~L~dgD~V~i 92 (99)
.+|||+.+... .+..++|++||+|.|
T Consensus 78 T~vNg~~i~~~~~~~~~~~~~~~L~~GD~I~i 109 (139)
T 1mzk_A 78 TLVNSHSISHPDLGSRKWGNPVELASDDIITL 109 (139)
T ss_dssp CEETTEESSCCCTTTCCCCCCEECCTTEEEEC
T ss_pred EEECCEECcCcccccccCCceEECCCCCEEEE
Confidence 57899887631 245689999999976
No 157
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=63.82 E-value=7.1 Score=24.42 Aligned_cols=58 Identities=5% Similarity=0.035 Sum_probs=34.7
Q ss_pred eEEEEEeCCCCCCCcchHHHHHHHHHHhcC--cccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEE
Q 034276 19 KVHNVDVVPPKGSEKLIMKDLLSWVGTNLI--KERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFI 93 (99)
Q Consensus 19 ~~~~vev~~~~~~~~~tv~dll~~L~~~~~--~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~ 93 (99)
+.++++++ ...||.+|=+.++++.. ...-+|.. .|+ +|-+++. | .++.|++|+.|.++
T Consensus 30 ~~~~lev~-----~~~TV~~lK~kI~~k~gip~~qQrLI~-~GK------iL~D~~T---L--~~y~I~~gsti~vl 89 (100)
T 1wju_A 30 RKNLLETR-----LHITGRELRSKIAETFGLQENYIKIVI-NKK------QLQLGKT---L--EEQGVAHNVKAMVL 89 (100)
T ss_dssp SSEEEEEE-----SSSBHHHHHHHHHHHTTCCSTTCEEEE-TTE------ECCTTSB---H--HHHTCCSSEEEEEE
T ss_pred cEEEEEeC-----CcCHHHHHHHHHHHHHCcCHHHeEEEe-CCe------ECCCCCc---H--HHcCCCCCCEEEEE
Confidence 34678888 57899999999988763 22222211 232 2222222 2 35688899888655
No 158
>4hv0_A AVTR; ribbon-helix-helix, DNA, transcription, viral protein; 2.60A {Acidianus filamentous virus 6}
Probab=62.61 E-value=6.8 Score=24.98 Aligned_cols=61 Identities=13% Similarity=0.148 Sum_probs=34.9
Q ss_pred CeEEEE--EcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccc--cccCCccccceEEEEcCcccee
Q 034276 1 MQLTLE--FGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEM--FMKGDSVRPGVLVLVNDCDWEL 76 (99)
Q Consensus 1 M~v~V~--f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l--~~~~g~l~~~v~ilvNg~di~~ 76 (99)
|.|+|+ +|+.|++++. + +|.|+..+++.|...|-++++.- +.. -++ .+..|.|||...--
T Consensus 1 mNIvIEeslY~~LkelAe--~------------EGvSvSav~RkLL~EyL~LeE~t~~ykr-~~~-~~~~i~v~~k~y~r 64 (106)
T 4hv0_A 1 MMVTVEEEVYEFLKKKAK--E------------EGTSVPAVIRKILKEYFGIEDRTRDYKR-QDL-EGSYIIVNGKKYYR 64 (106)
T ss_dssp -CEEEEHHHHHHHHHHHH--H------------TTSCHHHHHHHHHHHHHTCCCCCC---------CCCEEEETTEEEEE
T ss_pred CeEEeeHHHHHHHHHHHH--H------------cCCCHHHHHHHHHHHHhccccchhhHHh-hCc-CCcEEEECCEEEEE
Confidence 555554 5667777764 2 57788888888877775544321 111 112 25668899987644
Q ss_pred c
Q 034276 77 S 77 (99)
Q Consensus 77 l 77 (99)
+
T Consensus 65 ~ 65 (106)
T 4hv0_A 65 I 65 (106)
T ss_dssp E
T ss_pred E
Confidence 3
No 159
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=61.95 E-value=35 Score=23.47 Aligned_cols=72 Identities=14% Similarity=0.003 Sum_probs=39.6
Q ss_pred CeEEEEEcchHhhhcC---CeeEEEEEeCCCCCCC--cchHHHHHHHHHHhcCcccccccccCCcccc----ceEEEEcC
Q 034276 1 MQLTLEFGGGLELLCD---SVKVHNVDVVPPKGSE--KLIMKDLLSWVGTNLIKERPEMFMKGDSVRP----GVLVLVND 71 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g---~~~~~~vev~~~~~~~--~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~----~v~ilvNg 71 (99)
|+|+++.+-. ..-.+ .-...+++++ + +.||-|+++.+....|.+... ..-+. .=.|.|||
T Consensus 1 ~~~~~~i~R~-~~~~~~~~~~~~~~v~~~-----~~~~~tll~~l~~~~~~~~~l~~~-----~~C~~g~Cg~C~v~v~G 69 (238)
T 2wdq_B 1 MRLEFSIYRY-NPDVDDAPRMQDYTLEAD-----EGRDMMLLDALIQLKEKDPSLSFR-----RSCREGVCGSDGLNMNG 69 (238)
T ss_dssp CEEEEEEEEC-CTTTCSSCEEEEEEEECC-----TTCCCBHHHHHHHHHHHCTTCCCC-----CSSSSSSSCTTEEEETT
T ss_pred CeEEEEEEEc-CCCCCCCCceEEEEeecC-----CCCCChHHHHHHHhcccCCCcccc-----ccCCCCCCCCCEEEECC
Confidence 7788777642 21111 1123456666 6 899999999987653432211 11122 23578899
Q ss_pred ccceecCCccCccCC
Q 034276 72 CDWELSGQLDTTLEE 86 (99)
Q Consensus 72 ~di~~l~g~~t~L~d 86 (99)
+.+.. =.|++.+
T Consensus 70 ~~~la---C~~~~~~ 81 (238)
T 2wdq_B 70 KNGLA---CITPISA 81 (238)
T ss_dssp EEEEG---GGCBGGG
T ss_pred EEEcc---cccchhh
Confidence 87642 2355554
No 160
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=60.83 E-value=6.5 Score=27.60 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=20.2
Q ss_pred EEEcCccceecCCccCccCCCCEEEEEe
Q 034276 67 VLVNDCDWELSGQLDTTLEEKDVVVFIS 94 (99)
Q Consensus 67 ilvNg~di~~l~g~~t~L~dgD~V~i~p 94 (99)
|.|||+-+.. ..+.+++||.|.+-.
T Consensus 126 V~VNG~~v~~---ps~~V~~gD~I~V~~ 150 (209)
T 2vqe_D 126 ITVNGRRVDL---PSYRVRPGDEIAVAE 150 (209)
T ss_dssp EEETTEECCC---TTCBCCTTCEEEECG
T ss_pred EEECCEEeCc---CCcCcCCCCEEEEcC
Confidence 8899987643 468999999999864
No 161
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=60.76 E-value=12 Score=23.22 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=18.9
Q ss_pred EEEEeCCCCCCCcchHHHHHHHHHHhcC
Q 034276 21 HNVDVVPPKGSEKLIMKDLLSWVGTNLI 48 (99)
Q Consensus 21 ~~vev~~~~~~~~~tv~dll~~L~~~~~ 48 (99)
..|.+. .+.|+.|+|+.-|+++.
T Consensus 22 ~~VKvt-----p~t~L~~VL~eaC~K~g 44 (90)
T 2al3_A 22 HTVKVT-----PSTVLLQVLEDTCRRQD 44 (90)
T ss_dssp EEECCC-----TTSBHHHHHHHHHHHTT
T ss_pred EEEEEC-----CCCCHHHHHHHHHHHhC
Confidence 456666 68999999999999885
No 162
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=60.55 E-value=2.6 Score=28.27 Aligned_cols=25 Identities=16% Similarity=0.061 Sum_probs=18.8
Q ss_pred EEEcCccceecCCccCccCCCCEEEEE
Q 034276 67 VLVNDCDWELSGQLDTTLEEKDVVVFI 93 (99)
Q Consensus 67 ilvNg~di~~l~g~~t~L~dgD~V~i~ 93 (99)
.+|||+.+.. +..++|++||+|.|=
T Consensus 119 T~VNg~ri~~--~~~~~L~~GD~I~~G 143 (158)
T 3els_A 119 TCLNNVVIPG--ARYIELRSGDVLTLS 143 (158)
T ss_dssp CEETTEECCT--TCCEECCTTEEEESS
T ss_pred cEECCEEcCC--CceEEcCCCCEEEEC
Confidence 5779887753 345789999999874
No 163
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=60.53 E-value=1.5 Score=28.48 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=18.6
Q ss_pred EEEcCccceecCCccCccCCCCEEEE
Q 034276 67 VLVNDCDWELSGQLDTTLEEKDVVVF 92 (99)
Q Consensus 67 ilvNg~di~~l~g~~t~L~dgD~V~i 92 (99)
.+|||+.+. .+..++|++||+|.|
T Consensus 102 T~vNg~~l~--~~~~~~L~~gd~i~~ 125 (140)
T 2jpe_A 102 TFLGHIRLE--PHKPQQIPIDSTVSF 125 (140)
T ss_dssp EESSSCEEC--SSSCCEECTTCCBBC
T ss_pred eEECCEECC--CCccEECCCCCEEEE
Confidence 577888765 345689999999876
No 164
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=58.05 E-value=19 Score=21.49 Aligned_cols=35 Identities=11% Similarity=0.007 Sum_probs=22.9
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHH-HHh
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWV-GTN 46 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L-~~~ 46 (99)
|+|+||-..+ +...++++++ +..||.++=+.+ .+.
T Consensus 2 mqI~VKtl~g------~~~~i~v~v~-----~~~TV~~lK~~I~~~~ 37 (87)
T 2lxa_A 2 VHLTLKKIQA------PKFSIEHDFS-----PSDTILQIKQHLISEE 37 (87)
T ss_dssp CEEEEEECSS------SCEECCEECC-----TTCBHHHHHHHHHHTT
T ss_pred EEEEEEcCCC------CEEEEEEcCC-----CCCcHHHHHHHHHHHh
Confidence 6888876543 2222344565 578999999998 553
No 165
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=57.17 E-value=4.4 Score=28.64 Aligned_cols=27 Identities=15% Similarity=0.032 Sum_probs=19.4
Q ss_pred EEEcCccceecCCccCccCCCCEEEEEec
Q 034276 67 VLVNDCDWELSGQLDTTLEEKDVVVFIST 95 (99)
Q Consensus 67 ilvNg~di~~l~g~~t~L~dgD~V~i~p~ 95 (99)
.+|||+.|.. ...++|++||+|.|=++
T Consensus 166 TfVNG~rI~~--~~~~~L~~GD~I~fG~s 192 (205)
T 3elv_A 166 TCLNNVVIPG--ARYIELRSGDVLTLSEF 192 (205)
T ss_dssp CEETTEECCB--TSCEECCTTCEEESSSS
T ss_pred CeECCEECCC--CceeECCCCCEEEECCC
Confidence 5789887753 23468999999987543
No 166
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=56.90 E-value=45 Score=22.95 Aligned_cols=77 Identities=13% Similarity=-0.006 Sum_probs=41.2
Q ss_pred CeEEEEEcchHhhhc---CCeeEEEEEeCCCCCCCcchHHHHHHHHHHh-cCcccccccccCCccccceEEEEcCcccee
Q 034276 1 MQLTLEFGGGLELLC---DSVKVHNVDVVPPKGSEKLIMKDLLSWVGTN-LIKERPEMFMKGDSVRPGVLVLVNDCDWEL 76 (99)
Q Consensus 1 M~v~V~f~a~l~~~~---g~~~~~~vev~~~~~~~~~tv~dll~~L~~~-~~~~~~~l~~~~g~l~~~v~ilvNg~di~~ 76 (99)
|+++++.+-. ..-. ..-...+++++ ++.||-|++..+..+ .|.+-..-.-..|.=+ .=.|.|||+.+..
T Consensus 4 m~~~~~i~R~-~~~~~~~~~~~~~~~~~~-----~~~tll~al~~~~~~~~p~l~~~~~c~~G~Cg-~C~v~v~G~~~~a 76 (243)
T 1kf6_B 4 KNLKIEVVRY-NPEVDTAPHSAFYEVPYD-----ATTSLLDALGYIKDNLAPDLSYRWSCRMAICG-SCGMMVNNVPKLA 76 (243)
T ss_dssp EEEEEEEEEC-CTTTCSSCEEEEEEEEEC-----TTCBHHHHHHHHHHHTCTTCCCCCCCSSSSSC-CCEEEETTEEEEG
T ss_pred ceEEEEEEEc-CCCCCCCCeeEEEEEecC-----CCChHHHHHHHcCcccCCCcccccCCCCCcCC-CCEeEECCEEEee
Confidence 5677776642 2111 11123567777 789999999998654 3433211000122211 2346789986544
Q ss_pred cCCccCccCCC
Q 034276 77 SGQLDTTLEEK 87 (99)
Q Consensus 77 l~g~~t~L~dg 87 (99)
- .|++.+|
T Consensus 77 C---~~~~~~~ 84 (243)
T 1kf6_B 77 C---KTFLRDY 84 (243)
T ss_dssp G---GCBGGGC
T ss_pred e---eeEHhhC
Confidence 3 3677666
No 167
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=56.69 E-value=13 Score=28.21 Aligned_cols=17 Identities=35% Similarity=0.515 Sum_probs=15.3
Q ss_pred CCccCccCCCCEEEEEe
Q 034276 78 GQLDTTLEEKDVVVFIS 94 (99)
Q Consensus 78 ~g~~t~L~dgD~V~i~p 94 (99)
.|.++.|+|||.|.|+.
T Consensus 359 eGkdyvv~DGDVi~iv~ 375 (376)
T 4a9a_A 359 VGLSHILEDEDVVTILK 375 (376)
T ss_dssp ECTTCBCCTTCEEEEEE
T ss_pred cCCCcEEcCCCEEEEEe
Confidence 48999999999999974
No 168
>2exd_A NFED short homolog; membrane protein; NMR {Pyrococcus horikoshii} SCOP: b.40.12.1
Probab=56.59 E-value=19 Score=21.35 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=25.3
Q ss_pred cccceEEEEcCccceecCCccCccCCCCEEEEEe
Q 034276 61 VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIS 94 (99)
Q Consensus 61 l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p 94 (99)
+.|.=.|.++|..|+.... .+|+.|+.|.+.-
T Consensus 27 i~~~G~V~i~Ge~W~A~s~--~~i~~G~~V~Vv~ 58 (80)
T 2exd_A 27 AEDHYLVEVEGDKWIAYSD--EKLSLGDRVMVVD 58 (80)
T ss_dssp CTTCEEEEETTEEEEECCS--SCCCTTCEEEEEE
T ss_pred cCCCEEEEECCEEEEEEEC--CccCCCCEEEEEE
Confidence 3444569999999998753 6899999998864
No 169
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=56.26 E-value=38 Score=21.91 Aligned_cols=23 Identities=9% Similarity=-0.048 Sum_probs=18.0
Q ss_pred EEEeCCCCCCCcchHHHHHHHHHHhcCc
Q 034276 22 NVDVVPPKGSEKLIMKDLLSWVGTNLIK 49 (99)
Q Consensus 22 ~vev~~~~~~~~~tv~dll~~L~~~~~~ 49 (99)
.++++ +..||.+|=+.+.+..|.
T Consensus 31 ~l~v~-----psdTV~~lK~kI~~~~p~ 53 (126)
T 1se9_A 31 PKAFP-----DATTVSALKETVISEWPR 53 (126)
T ss_dssp EEEEC-----TTCBHHHHHHHHHHHSCT
T ss_pred eeecC-----ccCHHHHHHHHHHhhccc
Confidence 47777 578999999999776654
No 170
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=55.82 E-value=5.7 Score=23.16 Aligned_cols=23 Identities=17% Similarity=0.079 Sum_probs=17.6
Q ss_pred EEEcCccceecCCccCccCCCCEEEE
Q 034276 67 VLVNDCDWELSGQLDTTLEEKDVVVF 92 (99)
Q Consensus 67 ilvNg~di~~l~g~~t~L~dgD~V~i 92 (99)
|.|||+-+.. ..+++.+||.|.+
T Consensus 48 V~VNG~~v~~---~~~~v~~gd~I~v 70 (79)
T 1p9k_A 48 VKVDGAVETR---KRCKIVAGQTVSF 70 (79)
T ss_dssp HEETTBCCCC---SSCCCCSSEEEEE
T ss_pred EEECCEEecC---CCCCCCCCCEEEE
Confidence 7789987632 3578999998876
No 171
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=55.35 E-value=30 Score=20.49 Aligned_cols=61 Identities=10% Similarity=0.032 Sum_probs=35.8
Q ss_pred EEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEE--EEcCccceecCCccCccCCCCEEEEE
Q 034276 21 HNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLV--LVNDCDWELSGQLDTTLEEKDVVVFI 93 (99)
Q Consensus 21 ~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~i--lvNg~di~~l~g~~t~L~dgD~V~i~ 93 (99)
.+++++ ...||.+|=+.|.+.. |..+.+|+..+. ++..+ |.++. ..| .++.+++|+.|.+.
T Consensus 21 ~~~~v~-----~~~TV~~lK~ki~~~~gip~~~qrL~~~~~---~g~~~~~l~~D~--~tL--~~y~i~~g~~l~v~ 85 (95)
T 1v6e_A 21 SEKRYS-----RSLTIAEFKCKLELVVGSPASCMELELYGA---DDKFYSKLDQED--ALL--GSYPVDDGCRIHVI 85 (95)
T ss_dssp EEEEEC-----TTSBHHHHHHHHHHHTCSCTTTCBCEEECS---SSCEEEECCCSS--SBT--TSSSCCTTCEEEEB
T ss_pred EEEEcC-----ccCHHHHHHHHHHHHHCCCHHHeEEEEeCC---CCccccccCCCc--CCH--hHCCCCCCCEEEEE
Confidence 467888 5789999999998876 333444543221 11111 11221 223 25788899998775
No 172
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=54.50 E-value=51 Score=24.22 Aligned_cols=62 Identities=11% Similarity=0.174 Sum_probs=39.5
Q ss_pred EEEeCCCCCCCcchHHHHHHHHHHhcCcc-----c-ccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEe
Q 034276 22 NVDVVPPKGSEKLIMKDLLSWVGTNLIKE-----R-PEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIS 94 (99)
Q Consensus 22 ~vev~~~~~~~~~tv~dll~~L~~~~~~~-----~-~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p 94 (99)
++.++ ..+||.|++..+.+++|+. . ..||-.++.-+.++- |-+++- |+ .+.+.+|+.+.+-|
T Consensus 16 ~~~f~-----~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~W-l~~~~~---l~--~y~~~~~~~l~~~~ 83 (371)
T 3ivf_A 16 TMQFE-----PSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIW-LEAGKA---LD--YYMLRNGDTMEYRK 83 (371)
T ss_dssp EEEEC-----TTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEE-CCTTSB---GG--GGTCCTTCEEEEEE
T ss_pred EEEEC-----CCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEe-ccCCCC---HH--HhCCCCCceeeccC
Confidence 57777 5799999999999999864 1 135654444444442 233332 21 34788888887755
No 173
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=53.50 E-value=22 Score=22.22 Aligned_cols=22 Identities=9% Similarity=0.119 Sum_probs=19.0
Q ss_pred EEEEeCCCCCCCcchHHHHHHHHHHhc
Q 034276 21 HNVDVVPPKGSEKLIMKDLLSWVGTNL 47 (99)
Q Consensus 21 ~~vev~~~~~~~~~tv~dll~~L~~~~ 47 (99)
..+.|+ +..|++|+++.|+++.
T Consensus 22 ksi~V~-----~~~Ta~dv~~~L~~K~ 43 (100)
T 1wgr_A 22 RSVEVA-----AGATARHVCEMLVQRA 43 (100)
T ss_dssp EEEEEC-----TTCCHHHHHHHHHCSS
T ss_pred EEEEEC-----CCCcHHHHHHHHHHHc
Confidence 468888 7899999999999866
No 174
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=53.08 E-value=5 Score=30.04 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=17.5
Q ss_pred EEEcCccceecCCccCccCCCCEEEE
Q 034276 67 VLVNDCDWELSGQLDTTLEEKDVVVF 92 (99)
Q Consensus 67 ilvNg~di~~l~g~~t~L~dgD~V~i 92 (99)
.+|||+.+. ..++|++||+|.|
T Consensus 350 t~vng~~i~----~~~~L~~gd~i~~ 371 (388)
T 2ff4_A 350 VHVQHERIR----SAVTLNDGDHIRI 371 (388)
T ss_dssp CEETTEECS----SEEEECTTCEEEE
T ss_pred eEECCEECC----CceECCCCCEEEE
Confidence 577888873 3579999999987
No 175
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=52.68 E-value=5.8 Score=28.15 Aligned_cols=22 Identities=23% Similarity=-0.032 Sum_probs=17.5
Q ss_pred EEEcCccceecCCccCccC-CCCEEEE
Q 034276 67 VLVNDCDWELSGQLDTTLE-EKDVVVF 92 (99)
Q Consensus 67 ilvNg~di~~l~g~~t~L~-dgD~V~i 92 (99)
+++||+.+.- .++|+ .||.|.|
T Consensus 137 vyvNg~~i~~----~~~L~~~GD~I~i 159 (238)
T 1wv3_A 137 VYINYELQEQ----LTNKAYIGDHIYV 159 (238)
T ss_dssp EEETTEECCS----SEEEEETTCEEEE
T ss_pred EEECCEEecc----ceeccCCcCEEEE
Confidence 6899988742 35899 9999987
No 176
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=51.42 E-value=7 Score=24.97 Aligned_cols=27 Identities=11% Similarity=0.160 Sum_probs=20.2
Q ss_pred EEEcCccceecCCccCccCCCCEEEEEec
Q 034276 67 VLVNDCDWELSGQLDTTLEEKDVVVFIST 95 (99)
Q Consensus 67 ilvNg~di~~l~g~~t~L~dgD~V~i~p~ 95 (99)
..+||+.+ ..+....|++||.+.++|-
T Consensus 72 ~~vng~~l--~k~~~~~L~~GD~leLl~g 98 (110)
T 2brf_A 72 STTGTQEL--KPGLEGSLGVGDTLYLVNG 98 (110)
T ss_dssp CEEC-CBC--CTTCEEEEETTCEEEEETT
T ss_pred cEECCEEc--CCCCEEEecCCCEEEEccC
Confidence 46787544 4577889999999999874
No 177
>2k5h_A Conserved protein; structure, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Methanothermobacterthermautotrophicus str}
Probab=48.78 E-value=18 Score=22.36 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=23.2
Q ss_pred eEEEEcCccceecCCccCccCCCCEEEEEe
Q 034276 65 VLVLVNDCDWELSGQLDTTLEEKDVVVFIS 94 (99)
Q Consensus 65 v~ilvNg~di~~l~g~~t~L~dgD~V~i~p 94 (99)
=.|.++|..|.... +.+++.|+.|.|.-
T Consensus 57 G~V~i~Ge~W~A~s--~~~i~~G~~V~Vv~ 84 (101)
T 2k5h_A 57 GLVKVDGETWRATS--GTVLDVGEEVSVKA 84 (101)
T ss_dssp EEEEETTEEEEEEC--SSCBCTTCEEEEEE
T ss_pred EEEEECCEEEEEEe--CCcCCCCCEEEEEE
Confidence 45889999999865 56899999998864
No 178
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=48.76 E-value=11 Score=26.47 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=19.8
Q ss_pred EEEcCccceecCCccCccCCCCEEEEEe
Q 034276 67 VLVNDCDWELSGQLDTTLEEKDVVVFIS 94 (99)
Q Consensus 67 ilvNg~di~~l~g~~t~L~dgD~V~i~p 94 (99)
|.|||+-+.. ..+.+++||.|.+-.
T Consensus 116 V~VNG~~V~~---pS~~V~~gD~I~V~~ 140 (201)
T 3bbn_D 116 ILVNGRIVDI---PSYRCKPQDTIMARD 140 (201)
T ss_dssp EEETTEECCC---TTCBCCTTEEEEECS
T ss_pred EEeCCEEEee---cceecCCCCEEEEcc
Confidence 8899987643 468999999998853
No 179
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=47.34 E-value=49 Score=20.55 Aligned_cols=60 Identities=12% Similarity=0.171 Sum_probs=39.8
Q ss_pred EEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccC-ccCCCCEEEEEec
Q 034276 20 VHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDT-TLEEKDVVVFIST 95 (99)
Q Consensus 20 ~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t-~L~dgD~V~i~p~ 95 (99)
++.+.+. ....++-|.++.|++-.-. ...+..+.+|++|..-+-.++ .+++||.|-.+-.
T Consensus 32 ev~FkIK-----~tt~l~KL~~aYc~r~gv~-----------~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~ 92 (95)
T 2l76_A 32 LVRLPLR-----MSEPLQSVVDHMATHLGVS-----------PSRILLLFGETELSPTATPRTLKLGVADIIDCVVL 92 (95)
T ss_dssp EEEEEEC-----SSSCTHHHHHHHHHHHTSC-----------GGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEEC
T ss_pred EEEEEEe-----cCChHHHHHHHHHhhcCCC-----------hhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEe
Confidence 4567776 4567888888888755322 225667788888755332222 5899999988754
No 180
>4ar0_A Type IV pilus biogenesis and competence protein P; transport, secretin type II secretion system; NMR {Neisseria meningitidis}
Probab=46.84 E-value=13 Score=24.01 Aligned_cols=71 Identities=14% Similarity=0.209 Sum_probs=47.5
Q ss_pred hhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceec-------CCccCcc
Q 034276 12 ELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELS-------GQLDTTL 84 (99)
Q Consensus 12 ~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l-------~g~~t~L 84 (99)
..+.|. .+++++. ++.++++++.|++... ..-+++ .+++..|.+-+++..|+-. .|+...
T Consensus 27 ~~~~G~--~isLnf~------da~i~~vl~~la~~tg--~NiV~d--~~V~G~VTl~l~~v~~~~al~~iL~~~gl~~~- 93 (128)
T 4ar0_A 27 MGFTGR--KISLDFQ------DVEIRTILQILAKESG--MNIVAS--DSVNGKMTLSLKDVPWDQALDLVMQARNLDMR- 93 (128)
T ss_dssp CCCSSC--EEEEEEE------EEEHHHHHHHHHHTTC--CEEEEC--TTCCCEEEEEEEEEEHHHHHHHHHHHHTEEEE-
T ss_pred ccCCCC--ceEEEEe------CCCHHHHHHHHHHHHC--CcEEEc--CCCCceeeEeecCCCHHHHHHHHHHHcCceEE-
Confidence 344553 3566665 6889999999998432 222443 3577788888888887632 566554
Q ss_pred CCCCEEEEEec
Q 034276 85 EEKDVVVFIST 95 (99)
Q Consensus 85 ~dgD~V~i~p~ 95 (99)
.+|..+.|.|.
T Consensus 94 ~~gnvi~I~p~ 104 (128)
T 4ar0_A 94 QQGNIVNIAPR 104 (128)
T ss_dssp EETTEEEEEEH
T ss_pred EECCEEEEECh
Confidence 46788888874
No 181
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=46.51 E-value=30 Score=25.27 Aligned_cols=65 Identities=6% Similarity=-0.051 Sum_probs=35.3
Q ss_pred EEEEeCCCCCCC-cchHHHHHHHHHHh-cCcccccccccCCccccceEEEEcCccceecCCccCccC--CCCEEEEEe
Q 034276 21 HNVDVVPPKGSE-KLIMKDLLSWVGTN-LIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLE--EKDVVVFIS 94 (99)
Q Consensus 21 ~~vev~~~~~~~-~~tv~dll~~L~~~-~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~--dgD~V~i~p 94 (99)
.+|+++ + +.||-|+|..+..+ .|.+--+---..|.= ..=.|.|||+.+..- .|++. .|+.++|-|
T Consensus 57 ~~v~v~-----~~~~tlLdaL~~i~~~~~ptl~~~~~C~~G~C-GsC~V~InG~~~laC---~t~v~~~~~~~~tIep 125 (282)
T 3vr8_B 57 FDVDLD-----KCGTMVLDALIKIKNEVDPTLTFRRSCREGIC-GSCAMNIAGENTLAC---ICNIDQNTSKTTKIYP 125 (282)
T ss_pred EEEEeC-----CCCCcHHHHHHhcCcccCCceeecCCCCCCCC-CCCEEEECCEEecch---hhhHhHhcCCcEEecc
Confidence 455665 5 78999999987654 232211110011221 233588999986533 34554 355666644
No 182
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=43.74 E-value=5.2 Score=28.85 Aligned_cols=64 Identities=14% Similarity=0.139 Sum_probs=0.6
Q ss_pred EEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCC-ccCccCCCCEEEEEecCCC
Q 034276 20 VHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQ-LDTTLEEKDVVVFISTLHG 98 (99)
Q Consensus 20 ~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g-~~t~L~dgD~V~i~p~v~G 98 (99)
++.+.+. ...+++.|.++.+++..-.. ..+-.+-+|+.|.--+- .+-.++|||.|.+|..--|
T Consensus 32 eV~FKIK-----rtTpL~KLM~AYcERqGLs~-----------~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~G 95 (227)
T 3v7o_A 32 EIFFKIK-----KTTPLRRLMEAFAKRQGKEM-----------DSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEc-----cCChHHHHHHHHHHHhCCCc-----------cceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccC
Confidence 3456666 46788888888887654221 23334556666553321 2336899999999987777
Q ss_pred C
Q 034276 99 G 99 (99)
Q Consensus 99 G 99 (99)
|
T Consensus 96 G 96 (227)
T 3v7o_A 96 G 96 (227)
T ss_dssp C
T ss_pred C
Confidence 6
No 183
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=42.89 E-value=16 Score=21.98 Aligned_cols=27 Identities=15% Similarity=0.068 Sum_probs=19.6
Q ss_pred hcCCeeEEEEEeCCCCCCCcchHHHHHHHHHH
Q 034276 14 LCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGT 45 (99)
Q Consensus 14 ~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~ 45 (99)
.+.++....|++- +|.|++|.|.+..+
T Consensus 7 hLPn~QrT~V~Vr-----pG~tlrdaL~KaLk 33 (77)
T 1c1y_B 7 FLPNKQRTVVNVR-----NGMSLHDCLMKALK 33 (77)
T ss_dssp EETTTEEEEEECC-----TTCBHHHHHHHHHH
T ss_pred ECCCCceEEEEec-----CCcCHHHHHHHHHH
Confidence 3333333467877 79999999998876
No 184
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Probab=42.22 E-value=17 Score=22.72 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=19.7
Q ss_pred ccceEEEEcCccceec---CCccCccCCC
Q 034276 62 RPGVLVLVNDCDWELS---GQLDTTLEEK 87 (99)
Q Consensus 62 ~~~v~ilvNg~di~~l---~g~~t~L~dg 87 (99)
||.+.|.|||+.++.| +..+|.|++-
T Consensus 8 RP~vti~I~Gq~~e~LLDTGAD~TVl~~~ 36 (99)
T 3ec0_A 8 RPVVTAYIEGQPVEVLLDTGADDSIVAGI 36 (99)
T ss_dssp CCEEEEEETTEEEEEEECTTCSSCEESSC
T ss_pred CCeEEEEECCEEEEEEEecCCCceEEcCc
Confidence 8899999999999987 3344566543
No 185
>3cp0_A Membrane protein implicated in regulation of MEMB protease activity; beta barrel, structural genomics, PSI-2; 1.65A {Corynebacterium glutamicum atcc 13032}
Probab=41.93 E-value=24 Score=20.55 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=23.0
Q ss_pred eEEEEcCccceecCCc-cCccCCCCEEEEEe
Q 034276 65 VLVLVNDCDWELSGQL-DTTLEEKDVVVFIS 94 (99)
Q Consensus 65 v~ilvNg~di~~l~g~-~t~L~dgD~V~i~p 94 (99)
=.|.++|..|...... +.+++.|+.|.+.-
T Consensus 40 G~V~~~G~~W~A~s~~~~~~i~~G~~V~Vv~ 70 (82)
T 3cp0_A 40 GQVRLDGSIWSARSMDPTHTFAEGEIVSVID 70 (82)
T ss_dssp CEEEETTEEEEEEESSTTCCBCTTCEEEEEE
T ss_pred EEEEECCEEEEEEECCCCCccCCCCEEEEEE
Confidence 3489999999976421 36799999998864
No 186
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=41.80 E-value=15 Score=27.89 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=14.9
Q ss_pred CccCCCCEEEEEecCCC
Q 034276 82 TTLEEKDVVVFISTLHG 98 (99)
Q Consensus 82 t~L~dgD~V~i~p~v~G 98 (99)
-+|++||.|.|++|-+|
T Consensus 38 ~~Lk~GD~I~ivaPSs~ 54 (371)
T 3tla_A 38 APLAVGDTIGFFSSSAP 54 (371)
T ss_dssp CCCCTTCEEEEECSSCC
T ss_pred CCCCCcCEEEEEeCCCC
Confidence 47999999999999765
No 187
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.53 E-value=69 Score=20.60 Aligned_cols=23 Identities=17% Similarity=0.029 Sum_probs=19.1
Q ss_pred EEEEEeCCCCCCCcchHHHHHHHHHHhc
Q 034276 20 VHNVDVVPPKGSEKLIMKDLLSWVGTNL 47 (99)
Q Consensus 20 ~~~vev~~~~~~~~~tv~dll~~L~~~~ 47 (99)
+++++++ +.+||++|=+.+++..
T Consensus 28 k~tv~v~-----~d~TV~dLKe~ls~~~ 50 (118)
T 2daf_A 28 EIVIPFK-----VDTILKYLKDHFSHLL 50 (118)
T ss_dssp EEEEEEC-----SSSCSHHHHHHHHHHH
T ss_pred EEEEEeC-----CCCcHHHHHHHHHhhh
Confidence 4577887 6899999999999876
No 188
>2fl8_A Baseplate structural protein GP10; bacteriophage T4, tail, evolution, structur comparisons, virus-viral protein complex; 12.00A {Enterobacteria phage T4} PDB: 2fl9_A
Probab=41.53 E-value=19 Score=29.34 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=27.5
Q ss_pred ccceEEEEcCccceecCCccCccCCCCEEEEEecCCC
Q 034276 62 RPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHG 98 (99)
Q Consensus 62 ~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v~G 98 (99)
.|+=++-++|++||+ ..|-+.||.|.|..-+-|
T Consensus 218 ~~~~~~~ldg~~irl----~~pc~~gd~v~i~ty~dg 250 (602)
T 2fl8_A 218 NEGELVPLDGFNIRL----RQPCNIGDTVQIETFMDG 250 (602)
T ss_pred CCCceeeccCceeee----cCccccCCEEEEEEeecc
Confidence 456779999999997 479999999999887654
No 189
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=41.31 E-value=13 Score=25.71 Aligned_cols=24 Identities=17% Similarity=0.004 Sum_probs=18.7
Q ss_pred EEEcCccceecCCccCccCCCCEEEEE
Q 034276 67 VLVNDCDWELSGQLDTTLEEKDVVVFI 93 (99)
Q Consensus 67 ilvNg~di~~l~g~~t~L~dgD~V~i~ 93 (99)
|.|||+.+. ..+++|++||.|.+.
T Consensus 30 V~VNG~~v~---~~~~~v~~gD~I~v~ 53 (234)
T 1ksk_A 30 VTVDGEIVR---NAAFKLLPEHDVAYD 53 (234)
T ss_dssp EEETTEECC---CTTCEECTTCCEEET
T ss_pred EEECCEEeC---CCCCCCCCCCEEEEe
Confidence 679998763 246899999999874
No 190
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=40.62 E-value=50 Score=20.45 Aligned_cols=19 Identities=37% Similarity=0.454 Sum_probs=15.7
Q ss_pred cCCccCccCCCCEEEEEec
Q 034276 77 SGQLDTTLEEKDVVVFIST 95 (99)
Q Consensus 77 l~g~~t~L~dgD~V~i~p~ 95 (99)
-+.+|-.|+.||.|+++..
T Consensus 29 tq~~dl~l~~GdlVAVl~k 47 (92)
T 1ug1_A 29 AQDLDVSLLEGDLVGVIKK 47 (92)
T ss_dssp CSSSCCCCCTTCEEEEEES
T ss_pred CCceeeeecCCCEEEEEec
Confidence 3567889999999999864
No 191
>1vct_A Hypothetical protein PH0236; helix rich, structural genomics, riken structural genomics/P initiative, RSGI, NPPSFA; 1.85A {Pyrococcus horikoshii} SCOP: a.7.12.1 d.286.1.1 PDB: 2bkn_A 2bko_A 2bkp_A
Probab=40.12 E-value=35 Score=23.20 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=17.0
Q ss_pred ceecCCccCccCCCCEEEEEec
Q 034276 74 WELSGQLDTTLEEKDVVVFIST 95 (99)
Q Consensus 74 i~~l~g~~t~L~dgD~V~i~p~ 95 (99)
+......+|.|++||.+.++-+
T Consensus 161 ~i~~P~~dt~L~~GD~Liv~g~ 182 (205)
T 1vct_A 161 WIFGPNENFKIRAGDVLIGRGT 182 (205)
T ss_dssp EEESCCTTCBCCTTCEEEEEEC
T ss_pred EEeCCCCCCEECCCCEEEEEEC
Confidence 3334567899999999998754
No 192
>2k14_A YUAF protein; NFED-like protein, cellular stress, unknown function; NMR {Bacillus subtilis}
Probab=40.07 E-value=28 Score=20.37 Aligned_cols=29 Identities=7% Similarity=0.061 Sum_probs=22.3
Q ss_pred EEEEcC---c-cceecCCccCccCCCCEEEEEe
Q 034276 66 LVLVND---C-DWELSGQLDTTLEEKDVVVFIS 94 (99)
Q Consensus 66 ~ilvNg---~-di~~l~g~~t~L~dgD~V~i~p 94 (99)
.|.++| . .|....-.+.+++.|+.|.+.-
T Consensus 38 ~V~i~g~gg~~~W~A~s~~~~~i~~G~~V~Vv~ 70 (84)
T 2k14_A 38 EVVIEGIGGTISKSAVSFDNQQISYGTTVLVVD 70 (84)
T ss_dssp EEEESCTTSCCCEEEEETTSCCBCSSCEEEEEE
T ss_pred EEEEeeECccEEEEEEeCCCCccCCCCEEEEEE
Confidence 488999 7 9987643345799999998864
No 193
>3mub_A Alanine racemase; alpha/beta barrel, extended beta-strand domain, pyridoxal PH cofactor, carba lysine, isomerase; HET: LLP KCX; 2.00A {Streptococcus pneumoniae} PDB: 3s46_A*
Probab=39.52 E-value=26 Score=26.17 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=22.2
Q ss_pred EEEcCccceecCC--c-------cCccCCCCEEEEEec
Q 034276 67 VLVNDCDWELSGQ--L-------DTTLEEKDVVVFIST 95 (99)
Q Consensus 67 ilvNg~di~~l~g--~-------~t~L~dgD~V~i~p~ 95 (99)
|+|||+....++. + +.+++.||+|.||-+
T Consensus 295 v~i~G~~~pivGrv~MD~~~vDv~~~~~~Gd~v~l~G~ 332 (367)
T 3mub_A 295 VLVDGQACPIVGRVSMDQITIRLPKLYPLGTKVTLIGS 332 (367)
T ss_dssp EEETTEEEEBCSCCCSSCEEEEESSCCCTTCEEEEEEE
T ss_pred EEECCEEeEEeChhcccEEEEECCCCCCCCCEEEEEeC
Confidence 8899998887763 1 234789999999853
No 194
>2akk_A RP4479, PHNA-like protein; beta-strand protein, structural genomics, PSI, protein struc initiative; NMR {Rhodopseudomonas palustris} SCOP: b.34.11.2
Probab=39.25 E-value=16 Score=21.84 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=12.8
Q ss_pred cCCccCccCCCCEEEEE
Q 034276 77 SGQLDTTLEEKDVVVFI 93 (99)
Q Consensus 77 l~g~~t~L~dgD~V~i~ 93 (99)
.+--.+.|++||.|+++
T Consensus 6 kDsnGn~L~dGDsVtlI 22 (74)
T 2akk_A 6 RDCNGALLADGDNVSLI 22 (74)
T ss_dssp BCSSCCBCCTTEEEEES
T ss_pred EcCCCCCccCCCEEEEE
Confidence 34445789999999886
No 195
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=38.84 E-value=65 Score=19.56 Aligned_cols=36 Identities=8% Similarity=0.080 Sum_probs=25.1
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcCcc
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKE 50 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~~~ 50 (99)
|+||+-|-|- ...+.+| ...|..+|.+.+.+.++-.
T Consensus 7 vkvK~~~~gd---------i~~~~v~-----~~i~~~~L~~kv~~~~~~~ 42 (89)
T 1vd2_A 7 VRVKAYYRGD---------IMITHFE-----PSISFEGLCNEVRDMCSFD 42 (89)
T ss_dssp EEEEEESSSC---------EEEEEEC-----TTCCHHHHHHHHHHHTTCC
T ss_pred EEEEEEeCCe---------EEEEECC-----CCCCHHHHHHHHHHHhCCC
Confidence 4566655554 1245677 5789999999999988743
No 196
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...
Probab=38.21 E-value=18 Score=22.55 Aligned_cols=25 Identities=36% Similarity=0.322 Sum_probs=18.4
Q ss_pred ccceEEEEcCccceec---CCccCccCC
Q 034276 62 RPGVLVLVNDCDWELS---GQLDTTLEE 86 (99)
Q Consensus 62 ~~~v~ilvNg~di~~l---~g~~t~L~d 86 (99)
||.+.|.|||+.++.| +..+|.+++
T Consensus 8 rP~vtvkI~Gq~~eaLLDTGAD~TVl~~ 35 (99)
T 2hs1_A 8 RPLVTIKIGGQLKEALLDTGADDTIIEE 35 (99)
T ss_dssp CCEEEEEETTEEEEEEECTTCSSEEESC
T ss_pred CCEEEEEECCEEEEEEeccCCCcEEEec
Confidence 7899999999999876 333444443
No 197
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=37.59 E-value=66 Score=19.28 Aligned_cols=62 Identities=10% Similarity=-0.018 Sum_probs=35.3
Q ss_pred EEEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccC-CccccceEEEEcCccceecCCccCccCCCCEEEEE
Q 034276 20 VHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKG-DSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFI 93 (99)
Q Consensus 20 ~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~-g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~ 93 (99)
..+++++ ...||.+|=+.|.+.. |....+|+..+ |+. +.-|.++. +.| .++.+++|+.|.+.
T Consensus 29 ~~~~~v~-----~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~---~~~L~~D~--~tL--~~Y~i~~gstihlv 93 (95)
T 2kjr_A 29 AFEVKLA-----KDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTC---VSTMDNND--AQL--GYYANSDGLRLHVV 93 (95)
T ss_dssp EEEEEEE-----TTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEE---EEECCCTT--SBH--HHHCCSSSCEEEEE
T ss_pred EEEEEeC-----ccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcc---cceeCCCC--CCH--hHCCcCCCCEEEEE
Confidence 4577787 5789999988888766 44444443321 210 00111211 122 25688999998775
No 198
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=37.51 E-value=22 Score=22.21 Aligned_cols=29 Identities=10% Similarity=-0.012 Sum_probs=20.3
Q ss_pred hhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHH
Q 034276 12 ELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGT 45 (99)
Q Consensus 12 ~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~ 45 (99)
|..+.++....|++- +|.|++|.|.+..+
T Consensus 21 rvhLPNqQrT~V~Vr-----pG~tlrdAL~KaLk 49 (95)
T 2l05_A 21 RVFLPNKQRTVVPAR-----CGVTVRDSLKKALM 49 (95)
T ss_dssp EEEETTTEEEEEECC-----TTCBHHHHHHHHHH
T ss_pred EEECCCCCeEEEEec-----CCcCHHHHHHHHHH
Confidence 333444433467877 79999999998876
No 199
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=37.46 E-value=13 Score=22.96 Aligned_cols=31 Identities=13% Similarity=0.045 Sum_probs=22.0
Q ss_pred hHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHH
Q 034276 10 GLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGT 45 (99)
Q Consensus 10 ~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~ 45 (99)
.+|..+.++....|++- +|.|++|.|.+..+
T Consensus 9 ~irvhLPn~QrT~V~Vr-----pG~tlrdaL~KaLk 39 (86)
T 1wxm_A 9 TVKVYLPNKQRTVVTVR-----DGMSVYDSLDKALK 39 (86)
T ss_dssp EEEEECSSSCEEEEECC-----SSCBSHHHHHHHHH
T ss_pred eEEEECCCCCeEEEEec-----CCcCHHHHHHHHHH
Confidence 34444444444567877 79999999998876
No 200
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=37.37 E-value=69 Score=20.39 Aligned_cols=35 Identities=20% Similarity=0.086 Sum_probs=23.0
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL 47 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~ 47 (99)
|+|-++..+ ++ ..+.+++. +..||.+|=+.+.++.
T Consensus 1 M~mfl~ir~------~k-tti~lev~-----~sdTV~~lK~kI~~~e 35 (118)
T 2fnj_B 1 MDVFLMIRR------HK-TTIFTDAK-----ESSTVFELKRIVEGIL 35 (118)
T ss_dssp CEEEEEEEE------BT-EEEEEEEE-----TTSBHHHHHHHHHHHH
T ss_pred CcEEEEEec------CC-EEEEEEeC-----CcChHHHHHHHHHHHh
Confidence 555555543 22 34667887 5789998888887655
No 201
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=37.06 E-value=17 Score=25.45 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=18.3
Q ss_pred EEEcCccceecCCccCccCCCCEEEEE
Q 034276 67 VLVNDCDWELSGQLDTTLEEKDVVVFI 93 (99)
Q Consensus 67 ilvNg~di~~l~g~~t~L~dgD~V~i~ 93 (99)
|.|||+.+. ..+++|++||.|.+.
T Consensus 29 V~VNG~~v~---~~~~~v~~gD~I~v~ 52 (243)
T 1vio_A 29 VKINGEIVK---SGSVQISQEDEIYFE 52 (243)
T ss_dssp EEETTEECC---CTTCEECTTSCEEET
T ss_pred EEECCEEeC---CCCCCcCCCCEEEEe
Confidence 679998763 246799999988764
No 202
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=36.72 E-value=17 Score=27.50 Aligned_cols=49 Identities=22% Similarity=0.136 Sum_probs=31.2
Q ss_pred CcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCccCccCCCCEEEEEec
Q 034276 32 EKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFIST 95 (99)
Q Consensus 32 ~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~ 95 (99)
.|+|+.|+-..+-..+.... +... + -+|++.+ |.+++|+|||.|.|+..
T Consensus 347 ~G~t~~d~a~~iH~d~~~~f--~~a~----~-----~~~~~~~----g~~~~l~dgDvv~i~~~ 395 (397)
T 1wxq_A 347 KGSTPRDLAFKVHTDLGKGF--LYAI----N-----ARTKRRV----GEDYELQFNDIVKIVSV 395 (397)
T ss_dssp TTCCHHHHHHHHCHHHHHTE--EEEE----E-----TTTCSBC----CTTCCCCTTEEEEEEEC
T ss_pred CCCCHHHHHHHHhHHHHhhh--hhhH----H-----hcCCEEc----CCCccccCCCEEEEEeC
Confidence 68999998887744332111 1111 0 1366532 89999999999999864
No 203
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=36.22 E-value=37 Score=20.89 Aligned_cols=38 Identities=5% Similarity=0.142 Sum_probs=26.3
Q ss_pred eEEEEEcchHh-hhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc
Q 034276 2 QLTLEFGGGLE-LLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL 47 (99)
Q Consensus 2 ~v~V~f~a~l~-~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~ 47 (99)
||+|+|.+.=. ....+ + .+-|| ...|+.+++..|+++.
T Consensus 13 KV~V~~~~~~~~P~l~k-~--KflV~-----~~~t~~~~~~~lRkrL 51 (96)
T 1wz3_A 13 KIVVHLRATGGAPILKQ-S--KFKVS-----GSDKFANVIDFLRRQL 51 (96)
T ss_dssp EEEEEEEECTTCCCCSC-C--EEEEE-----TTSBTHHHHHHHHHHH
T ss_pred eEEEEEEECCCCCcccc-c--EEEeC-----CCCcHHHHHHHHHHhc
Confidence 57888877622 11222 2 36688 6789999999998865
No 204
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=36.16 E-value=58 Score=19.12 Aligned_cols=62 Identities=8% Similarity=-0.084 Sum_probs=35.2
Q ss_pred EEEEEeCCCCCCCcchHHHHHHHHHHhc--Ccccccccc--cCCccccceEEEEcCccceecCCccCccCCCCEEEEE
Q 034276 20 VHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFM--KGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFI 93 (99)
Q Consensus 20 ~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~--~~g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~ 93 (99)
..+..++ ...||.+|=+.|.+.. |....+|+. .++.. .--+.+ |=+.| .++.+++|..|.++
T Consensus 16 ~~E~r~~-----~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~---~g~~l~--d~~tL--~~Y~i~~g~~ihlv 81 (86)
T 4b6w_A 16 VPEKRYG-----LAQTIESIKENVFTHFATPPEYMQLQLIDDRGIT---IEKNMA--NDKQL--GYYQCRDEFVIHVV 81 (86)
T ss_dssp EEEEEEE-----TTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCE---EESSCC--TTSBG--GGGTCCTTCEEEEE
T ss_pred EEEEEcC-----ccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCc---eeeEcC--CCCCH--HHCCCCCCCEEEEE
Confidence 3456677 5789999999998877 333334432 12111 100111 11223 36789999999876
No 205
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=36.00 E-value=72 Score=19.25 Aligned_cols=62 Identities=10% Similarity=-0.049 Sum_probs=34.2
Q ss_pred EEEEEeCCCCCCCcchHHHHHHHHHHhc--Ccccccc-cccC-CccccceEEEEcCccceecCCccCccCCCCEEEEE
Q 034276 20 VHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEM-FMKG-DSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFI 93 (99)
Q Consensus 20 ~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l-~~~~-g~l~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~ 93 (99)
..+++++ ...||.+|=+.|.++. |....+| |... |+. +.-|.++ =+.| .++.+++|+.|.++
T Consensus 28 ~~e~~v~-----~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~---~~~L~~D--~~tL--~~Y~I~~g~~Ihlv 93 (97)
T 2kj6_A 28 SADARFS-----PQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSK---VAVLSDD--SRPL--GFFSPFDGFRLHII 93 (97)
T ss_dssp CEEEEEC-----TTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCB---CCCSSGG--GSCH--HHHCCCSCCEEEEE
T ss_pred EEEEEeC-----CCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcc---cceecCC--cCCH--HHCCCCCCCEEEEE
Confidence 3567888 5789999988888766 3333344 3221 110 0000011 1112 25688999998775
No 206
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=35.46 E-value=64 Score=23.07 Aligned_cols=24 Identities=29% Similarity=0.170 Sum_probs=19.5
Q ss_pred EEEEEeCCCCCCCcchHHHHHHHHHHhcC
Q 034276 20 VHNVDVVPPKGSEKLIMKDLLSWVGTNLI 48 (99)
Q Consensus 20 ~~~vev~~~~~~~~~tv~dll~~L~~~~~ 48 (99)
..++++. ..+|++|+++.++++..
T Consensus 29 ~~~~~vd-----~~tt~~el~~~v~~~l~ 52 (296)
T 3qij_A 29 VYECVVE-----KHAKGQDLLKRVCEHLN 52 (296)
T ss_dssp EEEEECC-----TTCBHHHHHHHHHHHHT
T ss_pred EEEEEEC-----CCCCHHHHHHHHHHHcC
Confidence 3467777 67999999999999774
No 207
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=35.31 E-value=1.1e+02 Score=20.96 Aligned_cols=63 Identities=11% Similarity=0.099 Sum_probs=37.4
Q ss_pred EEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCCcc-CccCCCCEEEEEecCCC
Q 034276 20 VHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLD-TTLEEKDVVVFISTLHG 98 (99)
Q Consensus 20 ~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g~~-t~L~dgD~V~i~p~v~G 98 (99)
++.+.+. ...+++-|.++.|++..-... .+..+.+|+.+...+..+ -.++|+|.|..+-.--|
T Consensus 32 ~v~~~i~-----~~~~l~kl~~~y~~~~g~~~~-----------~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~G 95 (209)
T 3uf8_A 32 EIFFKIK-----KTTPLRRLMEAFAKRQGKEMD-----------SLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (209)
T ss_dssp EEEEEEE-----TTSCTHHHHHHHHHHHTCCGG-----------GCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTT
T ss_pred EEEEEEe-----eCCHHHHHHHHHHHhhCCChh-----------eEEEEECCEeccCCCChHHhhhcccccchhhccccc
Confidence 4578887 578899999999987643221 223444555544332222 25567777776655444
No 208
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=35.04 E-value=26 Score=21.77 Aligned_cols=20 Identities=10% Similarity=0.380 Sum_probs=16.7
Q ss_pred EEEeCCCCCCCcchHHHHHHHHHHh
Q 034276 22 NVDVVPPKGSEKLIMKDLLSWVGTN 46 (99)
Q Consensus 22 ~vev~~~~~~~~~tv~dll~~L~~~ 46 (99)
.++++ ...|++++|+.|+++
T Consensus 8 ~l~v~-----~~~TL~~lid~L~~~ 27 (98)
T 1y8x_B 8 NIQFS-----PSAKLQEVLDYLTNS 27 (98)
T ss_dssp CEECC-----TTCBHHHHHHHHHHC
T ss_pred EEEEC-----CchhHHHHHHHHHhC
Confidence 46777 578999999999983
No 209
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=35.03 E-value=25 Score=22.95 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=20.8
Q ss_pred CccccceEEEEcCccceec---CCccCccCC
Q 034276 59 DSVRPGVLVLVNDCDWELS---GQLDTTLEE 86 (99)
Q Consensus 59 g~l~~~v~ilvNg~di~~l---~g~~t~L~d 86 (99)
..=||.+.+.|||+.++.| +..+|.|++
T Consensus 19 ~~~RP~v~i~I~G~~~~~LlDTGAd~tVl~~ 49 (132)
T 3slz_A 19 PPPEPRITLKVGGQPVTFLVDTGAQHSVLTQ 49 (132)
T ss_dssp CCCSSEEEEEETTEEEEEEECTTCSSCEECS
T ss_pred ccCCCEEEEEECCEEEEEEEeCCCCeEEEcc
Confidence 3468999999999999987 333455554
No 210
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A
Probab=34.67 E-value=56 Score=20.03 Aligned_cols=43 Identities=7% Similarity=-0.089 Sum_probs=22.3
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--Cccc
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKER 51 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~ 51 (99)
|+++++-..+ .++++++++|.. .-...+...++.++.+. |++|
T Consensus 1 M~v~~e~~~~------~~~~l~v~v~~~--~~~~~~~~~~~~~~k~~~ipGFR 45 (109)
T 2nsc_A 1 MEVKELERDK------NRVVLEYVFGAE--EIAQAEDKAVRYLNQRVEIPGFR 45 (109)
T ss_dssp CEEEEEEEET------TEEEEEEECCHH--HHHHHHHHHHHHHHTTCCCTTSC
T ss_pred CceEEEEcCC------CEEEEEEEECHH--HHHHHHHHHHHHHhccCCCCCcC
Confidence 7777765433 345677888720 00234445555555444 4444
No 211
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=33.65 E-value=79 Score=18.98 Aligned_cols=48 Identities=8% Similarity=0.015 Sum_probs=29.9
Q ss_pred EEEEeCCCCCCCcchHHHHHHHHHHhcCcc--cccccccCCccccceEEEEcCccce
Q 034276 21 HNVDVVPPKGSEKLIMKDLLSWVGTNLIKE--RPEMFMKGDSVRPGVLVLVNDCDWE 75 (99)
Q Consensus 21 ~~vev~~~~~~~~~tv~dll~~L~~~~~~~--~~~l~~~~g~l~~~v~ilvNg~di~ 75 (99)
+.+.+| .+.+..+|.+.|+++.+-. .-.|...+-.=+..+ +.|+.|.+
T Consensus 16 vairvp-----~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~v--i~~d~dl~ 65 (83)
T 1oey_A 16 VVMKTQ-----PGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELV--PLSEDSMK 65 (83)
T ss_dssp EEEEEC-----TTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCE--ECCTTTHH
T ss_pred EEEECC-----CCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCee--ccChHHHH
Confidence 468899 7999999999999998642 223333221112223 66766643
No 212
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=33.52 E-value=19 Score=26.29 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=18.2
Q ss_pred EEEcCccceecCCccCccCCCCEEEEE
Q 034276 67 VLVNDCDWELSGQLDTTLEEKDVVVFI 93 (99)
Q Consensus 67 ilvNg~di~~l~g~~t~L~dgD~V~i~ 93 (99)
|.|||+-+. ..+.+.+||.|.+.
T Consensus 33 V~VNG~~v~----~~~~V~~gD~I~v~ 55 (290)
T 3dh3_A 33 VFLNGKRAT----IGDQVKPGDVVKVN 55 (290)
T ss_dssp EEETTEECC----TTCEECTTCCEEET
T ss_pred EEECCEEcc----CCcCcCCCCEEEec
Confidence 789998762 46789999999874
No 213
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1}
Probab=33.42 E-value=36 Score=25.82 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=23.3
Q ss_pred eEEEEcCccceecCC--ccC-------ccCCCCEEEEEec
Q 034276 65 VLVLVNDCDWELSGQ--LDT-------TLEEKDVVVFIST 95 (99)
Q Consensus 65 v~ilvNg~di~~l~g--~~t-------~L~dgD~V~i~p~ 95 (99)
--|+|||+....++. +|. .++.||+|.||-+
T Consensus 301 ~~v~i~G~~~pivGrv~MD~~~vDvt~~~~~GD~V~l~G~ 340 (395)
T 3hur_A 301 SSVIINGKRMPIIGRITMDQTMVKLDRKYPIGTRVTLIGK 340 (395)
T ss_dssp EEEEETTEEEEBCSCCCSSCEEEECSSCCCTTCEEEEEES
T ss_pred CeEEECCEEEEEECceeccEEEEECCCCCCCCCEEEEEcC
Confidence 458999998888763 121 5788999999864
No 214
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=33.25 E-value=9 Score=29.30 Aligned_cols=64 Identities=14% Similarity=0.139 Sum_probs=0.0
Q ss_pred EEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecCC-ccCccCCCCEEEEEecCCC
Q 034276 20 VHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQ-LDTTLEEKDVVVFISTLHG 98 (99)
Q Consensus 20 ~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~g-~~t~L~dgD~V~i~p~v~G 98 (99)
++.+.+. ...+++.|.++.+++..-.. ..+-.+-+|++|.--+- .+-.++|||.|.++..--|
T Consensus 32 ~v~FkIk-----~~t~l~kLm~aY~~r~G~~~-----------~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g 95 (360)
T 3ix6_A 32 EIFFKIK-----KTTPLRRLMEAFAKRQGKEM-----------DSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEe-----cCChHHHHHHHHHHHhCCCc-----------ceEEEEECCeECCCCCChHHcCCCccchhhhhhccCc
Confidence 3456666 56788888888887654221 23445557777653322 2236899999999987766
Q ss_pred C
Q 034276 99 G 99 (99)
Q Consensus 99 G 99 (99)
|
T Consensus 96 ~ 96 (360)
T 3ix6_A 96 G 96 (360)
T ss_dssp -
T ss_pred h
Confidence 5
No 215
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=32.85 E-value=12 Score=23.61 Aligned_cols=36 Identities=8% Similarity=0.035 Sum_probs=23.2
Q ss_pred CCcccc-ceEEEEcCccceecC--CccCcc---CCCCEEEEE
Q 034276 58 GDSVRP-GVLVLVNDCDWELSG--QLDTTL---EEKDVVVFI 93 (99)
Q Consensus 58 ~g~l~~-~v~ilvNg~di~~l~--g~~t~L---~dgD~V~i~ 93 (99)
.+.|++ ++++-|||++++.+. ..-..| ..|+.|.+.
T Consensus 47 ~aGL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~v~L~ 88 (113)
T 3soe_A 47 CQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLL 88 (113)
T ss_dssp STTCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCEEEEE
T ss_pred hCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 456777 599999999997553 122222 347777764
No 216
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosph; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A*
Probab=32.78 E-value=26 Score=26.21 Aligned_cols=29 Identities=31% Similarity=0.433 Sum_probs=21.9
Q ss_pred EEEcCccceecCC---------ccCccCCCCEEEEEec
Q 034276 67 VLVNDCDWELSGQ---------LDTTLEEKDVVVFIST 95 (99)
Q Consensus 67 ilvNg~di~~l~g---------~~t~L~dgD~V~i~p~ 95 (99)
|+|||+....++. .+.+++.||+|.||-+
T Consensus 299 v~i~G~~~pivGrv~MD~~~vDv~~~~~~Gd~v~l~G~ 336 (371)
T 3e5p_A 299 VLVNGKRCEIVGRVCMDQCMIRLAEEVPVGPVVTLVGK 336 (371)
T ss_dssp EESSSCEEEEESCCCSSCEEEEESSCCCSCCEEEEEEE
T ss_pred EEECCEEeEEeceecccEEEEECCCCCCCCCEEEEEcC
Confidence 8899998887763 1234789999999853
No 217
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*
Probab=32.43 E-value=74 Score=19.88 Aligned_cols=43 Identities=21% Similarity=0.171 Sum_probs=21.9
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--Cccc
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKER 51 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~ 51 (99)
|+++++-..+ .++.+++++|.. .-...+...++.++.+. |++|
T Consensus 4 M~v~~e~~~~------~~~~l~v~v~~~--~~~~~~~~~~~~~~k~v~ipGFR 48 (121)
T 1p9y_A 4 MQVSVETTQG------LGRRVTITIAAD--SIETAVKSELVNVAKKVRIDGLR 48 (121)
T ss_dssp CEEEEEECST------TEEEEEEEECHH--HHHHHHHHHHHHHHTTCCCTTSC
T ss_pred ceEEEEECCC------cEEEEEEEECHH--HHHHHHHHHHHHHHhhCccCCcC
Confidence 7777765433 345678888820 00233444455554443 4444
No 218
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=31.88 E-value=19 Score=27.12 Aligned_cols=16 Identities=25% Similarity=0.335 Sum_probs=14.1
Q ss_pred cCCccCccCCCCEEEE
Q 034276 77 SGQLDTTLEEKDVVVF 92 (99)
Q Consensus 77 l~g~~t~L~dgD~V~i 92 (99)
+.|.++.++|||.|.|
T Consensus 344 ~egk~y~v~dgDii~f 359 (363)
T 1jal_A 344 LEGKDYIVQDGDVMHF 359 (363)
T ss_dssp EECTTCBCCTTCEEEE
T ss_pred ccCCccEecCCCEEEE
Confidence 4689999999999887
No 219
>4a3q_A Alanine racemase 1; isomerase, PLP-dependent enzymes; HET: PLP; 2.15A {Staphylococcus aureus} PDB: 3oo2_A
Probab=31.59 E-value=40 Score=25.35 Aligned_cols=31 Identities=29% Similarity=0.491 Sum_probs=23.3
Q ss_pred eEEEEcCccceecCC--ccC-------ccCCCCEEEEEec
Q 034276 65 VLVLVNDCDWELSGQ--LDT-------TLEEKDVVVFIST 95 (99)
Q Consensus 65 v~ilvNg~di~~l~g--~~t-------~L~dgD~V~i~p~ 95 (99)
--++|||+....++. +|. .++.||+|.||-+
T Consensus 295 ~~v~i~G~~~pivGrv~MD~~~vDvt~~~~~Gd~V~l~G~ 334 (382)
T 4a3q_A 295 SFVNVNGHQCEVIGRVCMDQTIVKVPDQVKAGDSVILIDN 334 (382)
T ss_dssp CEEEETTEEEEBCSCCCSSCEEEEECTTCCTTCEEEEECS
T ss_pred CEEEECCEEEEEeeeeeccEEEEECCCCCCCCCEEEEEeC
Confidence 468999998887753 121 5788999999964
No 220
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=30.75 E-value=20 Score=23.97 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=20.8
Q ss_pred EEEcCccceecCCccCccCCCCEEEEEecC
Q 034276 67 VLVNDCDWELSGQLDTTLEEKDVVVFISTL 96 (99)
Q Consensus 67 ilvNg~di~~l~g~~t~L~dgD~V~i~p~v 96 (99)
..+||..+ ..+....|++||.+.|+|-.
T Consensus 72 ~~vng~~L--~k~~~~~L~~GD~LeLl~g~ 99 (143)
T 1yj5_C 72 STVGVHEL--KPGLSGSLSLGDVLYLVNGL 99 (143)
T ss_dssp CEETTEEC--CTTCEEEECTTCEEESSSSC
T ss_pred cEECCEEe--cCCCEEEecCCCEEEEecCC
Confidence 35677443 45778899999999988754
No 221
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=30.09 E-value=33 Score=21.44 Aligned_cols=27 Identities=11% Similarity=-0.041 Sum_probs=19.4
Q ss_pred hcCCeeEEEEEeCCCCCCCcchHHHHHHHHHH
Q 034276 14 LCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGT 45 (99)
Q Consensus 14 ~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~ 45 (99)
.+.++....|++- +|.|++|.|.+..+
T Consensus 19 hLPNqQrT~V~Vr-----pG~tlrdaL~KaLk 45 (96)
T 3ny5_A 19 FLPNKQRTVVPAR-----CGVTVRDSLKKALM 45 (96)
T ss_dssp EETTTEEEEEECC-----TTCBHHHHHHHHHH
T ss_pred ECCCCceEEEEec-----CCcCHHHHHHHHHH
Confidence 3333333467777 79999999998876
No 222
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=29.93 E-value=6.4 Score=27.77 Aligned_cols=60 Identities=17% Similarity=0.096 Sum_probs=34.0
Q ss_pred CcchHHHHHHHHHHhcCccccc-ccccC-Cccc---cceEEEEcCccceecCCccCccCCCCEEEEEe
Q 034276 32 EKLIMKDLLSWVGTNLIKERPE-MFMKG-DSVR---PGVLVLVNDCDWELSGQLDTTLEEKDVVVFIS 94 (99)
Q Consensus 32 ~~~tv~dll~~L~~~~~~~~~~-l~~~~-g~l~---~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p 94 (99)
.|.|-..||..+..+....... .|... ...+ .+=.|.|||+-+.. .++.+++||.|.+-.
T Consensus 82 kG~tg~~ll~lle~RLD~~L~r~g~~~SR~~ArqLI~~G~V~VNG~~V~~---ps~~Vk~GD~I~V~~ 146 (205)
T 3r8n_D 82 KGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNI---ASYQVSPNDVVSIRE 146 (205)
T ss_dssp SSCHHHHHHHHHHTBTTHHHHTTSSCSSHHHHHHHHHTTCCBSSSSBCCC---TTCBCCTTBCCBCCS
T ss_pred CCCcHHHHHHhhHhhHHHHHHHhcchhHHHHHHHHHHCCCEEECCEEEcc---CCcCcCCCCEEEecC
Confidence 4778777777776544333221 11100 0111 11137899987643 468999999987743
No 223
>2lte_A Specialized acyl carrier protein; APO protein, transferase; NMR {Pseudomonas aeruginosa}
Probab=35.63 E-value=11 Score=23.07 Aligned_cols=13 Identities=15% Similarity=0.194 Sum_probs=7.9
Q ss_pred cchHHHHHHHHHH
Q 034276 33 KLIMKDLLSWVGT 45 (99)
Q Consensus 33 ~~tv~dll~~L~~ 45 (99)
..||+++.+++.+
T Consensus 85 ~~TV~~l~~~I~~ 97 (103)
T 2lte_A 85 LETVDELFQLVEK 97 (103)
Confidence 4566666666654
No 224
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=29.33 E-value=1e+02 Score=19.07 Aligned_cols=19 Identities=32% Similarity=0.195 Sum_probs=16.3
Q ss_pred chHHHHHHHHHHhcCcccc
Q 034276 34 LIMKDLLSWVGTNLIKERP 52 (99)
Q Consensus 34 ~tv~dll~~L~~~~~~~~~ 52 (99)
.|..+|.+.+.+.||.+..
T Consensus 42 ~s~~~L~~~V~~lFp~l~~ 60 (102)
T 2kkc_A 42 GPCERLLSRVAVLFPALRP 60 (102)
T ss_dssp CHHHHHHHHHHHHCTTSCS
T ss_pred ccHHHHHHHHHHHccccCC
Confidence 5899999999999887664
No 225
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=29.24 E-value=18 Score=27.11 Aligned_cols=16 Identities=19% Similarity=0.252 Sum_probs=14.0
Q ss_pred cCCccCccCCCCEEEE
Q 034276 77 SGQLDTTLEEKDVVVF 92 (99)
Q Consensus 77 l~g~~t~L~dgD~V~i 92 (99)
+.|.++.++|||.|.|
T Consensus 349 ~~gk~y~v~dgdi~~~ 364 (368)
T 2dby_A 349 LEGKDYEVQDGDVIYV 364 (368)
T ss_dssp EECTTCBCCTTEEEEE
T ss_pred ccCCCceecCCCEEEE
Confidence 4689999999999877
No 226
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=29.16 E-value=23 Score=27.10 Aligned_cols=20 Identities=15% Similarity=0.252 Sum_probs=15.8
Q ss_pred cCCccCccCCCCEEEEEecC
Q 034276 77 SGQLDTTLEEKDVVVFISTL 96 (99)
Q Consensus 77 l~g~~t~L~dgD~V~i~p~v 96 (99)
+.|.++.++|||.|.|-=-+
T Consensus 370 ~~Gk~y~v~dgDii~f~fn~ 389 (396)
T 2ohf_A 370 QQGRNYIVEDGDIIFFKFNT 389 (396)
T ss_dssp EECTTCBCCTTCEEEEEEC-
T ss_pred ccCCCceeeCCCEEEEEecC
Confidence 46889999999999885444
No 227
>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics, montreal-kingston BA structural genomics initiative, BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*
Probab=29.11 E-value=49 Score=24.04 Aligned_cols=35 Identities=11% Similarity=0.276 Sum_probs=29.4
Q ss_pred ccceEEEEcCccceecCCccCccCCCCEEEEEecC
Q 034276 62 RPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTL 96 (99)
Q Consensus 62 ~~~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~v 96 (99)
...+.|.++|+.-.+--|..-.|++|.-|+|.|-+
T Consensus 154 ~~~v~V~~DG~~~~~~aG~~i~L~PGESiTl~Pg~ 188 (246)
T 3kmh_A 154 DSDITVVIDGCRQKHTAGSQLRLSPGESICLPPGL 188 (246)
T ss_dssp CSCEEEEETTEEEEECTTCEEEECTTCEEEECTTE
T ss_pred CCCeEEecCCeEEEeCCCCEEEECCCCeEecCCCC
Confidence 35788999999888877888899999999998853
No 228
>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A*
Probab=29.05 E-value=11 Score=21.71 Aligned_cols=15 Identities=13% Similarity=0.158 Sum_probs=10.6
Q ss_pred CcchHHHHHHHHHHh
Q 034276 32 EKLIMKDLLSWVGTN 46 (99)
Q Consensus 32 ~~~tv~dll~~L~~~ 46 (99)
...||+++.+++.++
T Consensus 67 ~~~Tv~~l~~~i~~~ 81 (86)
T 1af8_A 67 RVDTPRELLDLINGA 81 (86)
T ss_dssp TCCSHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH
Confidence 456788888877764
No 229
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=28.30 E-value=52 Score=21.85 Aligned_cols=25 Identities=16% Similarity=0.015 Sum_probs=18.3
Q ss_pred EcCccceecCCccCccCCCCEEEEEec
Q 034276 69 VNDCDWELSGQLDTTLEEKDVVVFIST 95 (99)
Q Consensus 69 vNg~di~~l~g~~t~L~dgD~V~i~p~ 95 (99)
-+|+.+ ....+|.|++||.+.++-+
T Consensus 180 R~~~~~--~p~~~~~l~~gD~l~v~g~ 204 (218)
T 3l4b_C 180 RGGVLV--VPRGDTEILSGDKLYVIVS 204 (218)
T ss_dssp ESSCEE--CCCTTCBCCTTEEEEEEEE
T ss_pred ECCEEE--cCCCCCEECCCCEEEEEEC
Confidence 345443 3667999999999998754
No 230
>2kdd_A Borealin; protein dimer, cell cycle, cell division, centromere, chromosomal protein, cytoplasm, mitosis, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=27.84 E-value=15 Score=21.93 Aligned_cols=18 Identities=17% Similarity=0.451 Sum_probs=10.5
Q ss_pred CccCCCCEEEEEecCCCC
Q 034276 82 TTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 82 t~L~dgD~V~i~p~v~GG 99 (99)
+||.++.+|.|--|++||
T Consensus 15 SPLa~~~ei~l~vPvG~G 32 (76)
T 2kdd_A 15 SPLADSKEIFLTVPVGGG 32 (76)
T ss_dssp -----CCSCEECCCSSSS
T ss_pred CcCCCCCceEEEeecCCC
Confidence 677788888888788876
No 231
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=27.70 E-value=24 Score=20.48 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=21.7
Q ss_pred ccc-ceEEEEcCccceecCCcc--CccCCCCEEEE
Q 034276 61 VRP-GVLVLVNDCDWELSGQLD--TTLEEKDVVVF 92 (99)
Q Consensus 61 l~~-~v~ilvNg~di~~l~g~~--t~L~dgD~V~i 92 (99)
|++ .+++-|||+++......+ ..++.|+.|.+
T Consensus 47 L~~GD~I~~ing~~v~~~~~~~~~~~~~~g~~v~l 81 (93)
T 2dls_A 47 VKEGDRIIKVNGTMVTNSSHLEVVKLIKSGAYVAL 81 (93)
T ss_dssp CCSSCEEEEETTEECSSSCHHHHHHHHTSSSEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHhhcCCCEEEE
Confidence 444 788999999987753332 23467888766
No 232
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=27.28 E-value=9.5 Score=24.23 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=13.8
Q ss_pred EEEcCccceecCCccCccCCCCE
Q 034276 67 VLVNDCDWELSGQLDTTLEEKDV 89 (99)
Q Consensus 67 ilvNg~di~~l~g~~t~L~dgD~ 89 (99)
|+|||+.+. ...|.+||.
T Consensus 64 VFVNGqrv~-----~~~I~~gDt 81 (102)
T 3uv0_A 64 IFVNDQEET-----VVDIGMENA 81 (102)
T ss_dssp EEETTEEES-----EEEECGGGC
T ss_pred EEECCEEee-----eEEccCCcc
Confidence 799999882 467788876
No 233
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=27.16 E-value=91 Score=22.67 Aligned_cols=34 Identities=15% Similarity=0.183 Sum_probs=24.2
Q ss_pred EEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc
Q 034276 3 LTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL 47 (99)
Q Consensus 3 v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~ 47 (99)
+.|++|-. . | +...+.|+ +..|.+||++.|+.+.
T Consensus 32 ~ivkv~~~-D---~--ss~~l~V~-----~~~TA~dv~~~L~~k~ 65 (281)
T 4gmv_A 32 LVIRVHMS-D---D--SSKTMMVD-----ERQTVRQVLDNLMDKS 65 (281)
T ss_dssp EEEEEEET-T---S--CEEEEEEE-----TTCBHHHHHHHHHHHS
T ss_pred EEEEEEec-C---C--CEEEEEEC-----CCCcHHHHHHHHHHhc
Confidence 45666544 1 2 34578888 7899999999998765
No 234
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=26.84 E-value=93 Score=22.76 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCCCcchHHHHHHHHHHhcC
Q 034276 20 VHNVDVVPPKGSEKLIMKDLLSWVGTNLI 48 (99)
Q Consensus 20 ~~~vev~~~~~~~~~tv~dll~~L~~~~~ 48 (99)
...+++. ..+|++|+++.++++..
T Consensus 97 ~~~~~vd-----~~tt~~el~~~v~~~l~ 120 (371)
T 3ivf_A 97 VKTIMVD-----DSKTVTDMLMTICARIG 120 (371)
T ss_dssp EEEEEEE-----TTSBHHHHHHHHHHHTT
T ss_pred EEEEEEC-----CCCCHHHHHHHHHHHcC
Confidence 3456676 67999999999999764
No 235
>3j20_D 30S ribosomal protein S4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.57 E-value=24 Score=24.32 Aligned_cols=28 Identities=14% Similarity=0.122 Sum_probs=20.8
Q ss_pred EEEcCccceecCCccCccCCC--CEEEE--EecCC
Q 034276 67 VLVNDCDWELSGQLDTTLEEK--DVVVF--ISTLH 97 (99)
Q Consensus 67 ilvNg~di~~l~g~~t~L~dg--D~V~i--~p~v~ 97 (99)
|.|||+-+.. ..+.+.+| |.|.+ .+|+.
T Consensus 130 V~VNg~~V~~---Ps~~V~~~~eD~I~v~~~s~i~ 161 (180)
T 3j20_D 130 IEVNGQIIRS---PSYLVLKEEEDTITYARTSPFA 161 (180)
T ss_dssp CEESSSBCCC---SSCCCCTGGGGCEECSSCSSSS
T ss_pred eEECCEEeCC---CCcccCCCCCCEEEEeCCCccc
Confidence 7789987754 46889999 88988 44444
No 236
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=26.34 E-value=56 Score=25.00 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=16.9
Q ss_pred EEcCccceecCCccCccCCCCEEEEE
Q 034276 68 LVNDCDWELSGQLDTTLEEKDVVVFI 93 (99)
Q Consensus 68 lvNg~di~~l~g~~t~L~dgD~V~i~ 93 (99)
.-||+-+ ...-+|.+++||+|.+|
T Consensus 417 ~R~~~~i--iP~gdt~i~~gD~vivf 440 (461)
T 4g65_A 417 VRGEEVL--IAHDRTVIEQDDHVVMF 440 (461)
T ss_dssp EETTEEE--ECCTTCBCCTTCEEEEE
T ss_pred EECCEEE--cCCCCCEECCCCEEEEE
Confidence 3455433 34559999999999876
No 237
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=26.29 E-value=1.1e+02 Score=21.33 Aligned_cols=34 Identities=9% Similarity=0.006 Sum_probs=24.2
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhcC
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLI 48 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~~ 48 (99)
|.++|.|.- | +.++++. ..+|++|+++.++++..
T Consensus 2 i~~~V~l~d------~---~~~~~v~-----~~tt~~el~~~v~~~l~ 35 (294)
T 1ef1_A 2 ISVRVTTMD------A---ELEFAIQ-----PNTTGKQLFDQVVKTIG 35 (294)
T ss_dssp EEEEEEETT------E---EEEEEEC-----TTCBHHHHHHHHHHHHT
T ss_pred EEEEEEECC------c---eEEEEEC-----CCCcHHHHHHHHHHHcC
Confidence 356666653 2 2357777 67999999999999764
No 238
>2v31_A Ubiquitin-activating enzyme E1 X; ligase, phosphorylation, catalytic domain, heteronuclear first catalytic cysteine half-domain, E1 protein; NMR {Mus musculus}
Probab=26.03 E-value=1.1e+02 Score=19.29 Aligned_cols=39 Identities=13% Similarity=0.088 Sum_probs=21.8
Q ss_pred ccccCCc-cccceEEEEc---CccceecCCccCccCCCCEEEE
Q 034276 54 MFMKGDS-VRPGVLVLVN---DCDWELSGQLDTTLEEKDVVVF 92 (99)
Q Consensus 54 l~~~~g~-l~~~v~ilvN---g~di~~l~g~~t~L~dgD~V~i 92 (99)
+++.+|+ ..+.++--|- .--+..++...-.|++||.|.|
T Consensus 8 V~D~dGE~p~~~~I~~Is~~~~g~Vt~~~~~~H~l~dGD~V~F 50 (112)
T 2v31_A 8 LTDSNGEQPLSAMVSMVTKDNPGVVTCLDEARHGFETGDFVSF 50 (112)
T ss_dssp CCCCCCSSCCEEEEEEECCSSSEEEEECTTCCCCCCTTCEEEE
T ss_pred EECCCCCccceeeeeeeecCCCcEEEEecCCccCCcCCCEEEE
Confidence 4555554 4444444451 1114445555568999998876
No 239
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*
Probab=25.67 E-value=19 Score=23.12 Aligned_cols=15 Identities=13% Similarity=0.144 Sum_probs=13.7
Q ss_pred ccceEEEEcCccceec
Q 034276 62 RPGVLVLVNDCDWELS 77 (99)
Q Consensus 62 ~~~v~ilvNg~di~~l 77 (99)
||.+ |.|||+.++.|
T Consensus 14 rP~v-ikI~Gq~~eaL 28 (116)
T 2hah_A 14 PEIL-IFVNGYPIKFL 28 (116)
T ss_dssp CEEE-EEETTEEEEEE
T ss_pred CCEE-EEECCEEEEEE
Confidence 8899 99999999877
No 240
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A
Probab=25.62 E-value=33 Score=21.17 Aligned_cols=31 Identities=6% Similarity=0.040 Sum_probs=21.8
Q ss_pred eEEEEcCccceecCCccCccCCCCEEEEEec
Q 034276 65 VLVLVNDCDWELSGQLDTTLEEKDVVVFIST 95 (99)
Q Consensus 65 v~ilvNg~di~~l~g~~t~L~dgD~V~i~p~ 95 (99)
++..+.|+=.-..++....+++||.+.|-|-
T Consensus 41 i~~v~~G~~~~~i~~~~~~l~~Gd~~~i~p~ 71 (164)
T 2arc_A 41 LNLTIRGQGVVKNQGREFVCRPGDILLFPPG 71 (164)
T ss_dssp EEEEEEECEEEEETTEEEEECTTCEEEECTT
T ss_pred EEEEEEeEEEEEECCEEEEecCCeEEEEcCC
Confidence 4455666665566777889999998777663
No 241
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=25.29 E-value=17 Score=20.99 Aligned_cols=32 Identities=13% Similarity=0.159 Sum_probs=19.0
Q ss_pred ccc-ceEEEEcCccceec--CCccCccCC-CCEEEE
Q 034276 61 VRP-GVLVLVNDCDWELS--GQLDTTLEE-KDVVVF 92 (99)
Q Consensus 61 l~~-~v~ilvNg~di~~l--~g~~t~L~d-gD~V~i 92 (99)
|++ .+++-|||+++..+ ......|+. |+.|.+
T Consensus 45 l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l 80 (91)
T 2vsp_A 45 LEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTL 80 (91)
T ss_dssp CCTTCEEEEETTEECTTSCHHHHHHHHTTSCSEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEE
Confidence 444 78899999999722 222223332 666655
No 242
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=25.11 E-value=21 Score=27.15 Aligned_cols=16 Identities=13% Similarity=0.275 Sum_probs=13.7
Q ss_pred cCCccCccCCCCEEEE
Q 034276 77 SGQLDTTLEEKDVVVF 92 (99)
Q Consensus 77 l~g~~t~L~dgD~V~i 92 (99)
+.|.++.++|||.|.|
T Consensus 372 ~~gk~y~v~dgdv~~f 387 (392)
T 1ni3_A 372 TKGKEYVMESGDIAHW 387 (392)
T ss_dssp EEETTCBCCTTCEEEC
T ss_pred ccCCceeeeCCCEEEE
Confidence 3688999999999876
No 243
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=24.84 E-value=32 Score=21.39 Aligned_cols=16 Identities=38% Similarity=0.661 Sum_probs=14.6
Q ss_pred ccceEEEEcCccceec
Q 034276 62 RPGVLVLVNDCDWELS 77 (99)
Q Consensus 62 ~~~v~ilvNg~di~~l 77 (99)
||.+.|.|||+.++.|
T Consensus 8 RP~v~v~I~Gq~~e~L 23 (104)
T 1fmb_A 8 RPTTIVLINDTPLNVL 23 (104)
T ss_dssp CCEEEEEETTEEEEEE
T ss_pred CCEEEEEECCEEEEEE
Confidence 8899999999999876
No 244
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=24.55 E-value=1.3e+02 Score=18.56 Aligned_cols=62 Identities=5% Similarity=-0.027 Sum_probs=35.1
Q ss_pred EEEEeCCCCCCCcchHHHHHHHHHHhc--CcccccccccCCccccceEEEE-cCccceecCCccCccCCCCEEEEE
Q 034276 21 HNVDVVPPKGSEKLIMKDLLSWVGTNL--IKERPEMFMKGDSVRPGVLVLV-NDCDWELSGQLDTTLEEKDVVVFI 93 (99)
Q Consensus 21 ~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~~~l~~~~g~l~~~v~ilv-Ng~di~~l~g~~t~L~dgD~V~i~ 93 (99)
.+++++ ...||.+|=+.|.+.. |..+.+|+..+.. ..++.-+ ++. ..| .++.+++|++|.+.
T Consensus 20 ~e~~v~-----~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~--~~~~~~l~~D~--~tL--~~y~i~~g~~ihvv 84 (122)
T 1t0y_A 20 MEKKYP-----AGMSLNDLKKKLELVVGTTVDSMRIQLFDGD--DQLKGELTDGA--KSL--KDLGVRDGYRIHAV 84 (122)
T ss_dssp EEEEEE-----TTSBHHHHHHHHHHHHCCCTTTEEEEEECSS--SSEEEECCCCS--SBT--TTTTCCSSEEEEEE
T ss_pred EEEEeC-----CCCcHHHHHHHHHHHhCCCHHHeEEEEecCC--CccccccCCCc--CCH--HHCCCCCCCEEEEE
Confidence 467777 5789999999888776 4444444432210 0111111 221 223 25788999988765
No 245
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infect disease, iodide SOAK, LLP, CAT-scratch DI isomerase; HET: LLP; 2.04A {Bartonella henselae}
Probab=24.44 E-value=88 Score=23.37 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=22.6
Q ss_pred ceEEEEcCccceecCC--c--------cC--ccCCCCEEEEEe
Q 034276 64 GVLVLVNDCDWELSGQ--L--------DT--TLEEKDVVVFIS 94 (99)
Q Consensus 64 ~v~ilvNg~di~~l~g--~--------~t--~L~dgD~V~i~p 94 (99)
.--|+|||+....++. + +. .++.||+|.||-
T Consensus 302 ~~~v~i~G~~~pivGrv~MD~~~vDvt~~~~~~~~Gd~v~l~G 344 (376)
T 3kw3_A 302 KGTVYFNGHKLPIVGHISMDSIIVDATDLDKKPQRGDWVELIG 344 (376)
T ss_dssp TCEEEETTEEEEBCSCCCSSCEEEECTTCSSCCCTTCEEEEEB
T ss_pred CceEEECCEEEEEeCeeccceEEEEcCCCcccCCCCCEEEEEC
Confidence 3568899999888762 1 11 277799999985
No 246
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A
Probab=24.01 E-value=35 Score=25.84 Aligned_cols=35 Identities=17% Similarity=0.053 Sum_probs=18.0
Q ss_pred EcchHhhhcCCee----EEEEEeCCCCCCCcchHHHHHHHHHHhc
Q 034276 7 FGGGLELLCDSVK----VHNVDVVPPKGSEKLIMKDLLSWVGTNL 47 (99)
Q Consensus 7 f~a~l~~~~g~~~----~~~vev~~~~~~~~~tv~dll~~L~~~~ 47 (99)
|||+||+.+++.- +.+.++++ .+-++.|.......
T Consensus 204 fYGPFRdAa~Sap~~GDRktYQmdp------aN~~EAlre~~~Di 242 (330)
T 1pv8_A 204 FYGPFRDAAKSSPAFGDRRCYQLPP------GARGLALRAVDRDV 242 (330)
T ss_dssp GGHHHHHCC-------------CCT------TCHHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCCCCCccccCCCC------CCHHHHHHHHHhhH
Confidence 7899999877431 23677773 45666666665443
No 247
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=23.99 E-value=10 Score=21.66 Aligned_cols=14 Identities=7% Similarity=0.216 Sum_probs=8.7
Q ss_pred cchHHHHHHHHHHh
Q 034276 33 KLIMKDLLSWVGTN 46 (99)
Q Consensus 33 ~~tv~dll~~L~~~ 46 (99)
..||+++.+++.++
T Consensus 69 ~~Tv~~l~~~i~~~ 82 (84)
T 2kwl_A 69 FETVGDVVNFIKKR 82 (84)
T ss_dssp CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 45677777666553
No 248
>2xzm_D Ribosomal protein S4 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_D
Probab=23.32 E-value=25 Score=24.16 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=20.3
Q ss_pred EEEcCccceecCCccCccCCCC--EEEEE--ecCCCC
Q 034276 67 VLVNDCDWELSGQLDTTLEEKD--VVVFI--STLHGG 99 (99)
Q Consensus 67 ilvNg~di~~l~g~~t~L~dgD--~V~i~--p~v~GG 99 (99)
|.|||+-+.. ..+.+.+|| .|.+. +|.+||
T Consensus 134 V~VNg~~V~~---Ps~~V~~~d~~~I~v~~~s~~~~~ 167 (181)
T 2xzm_D 134 IKVGKNLVNV---PSFMVRTDSEKSIDFASTSPLGGG 167 (181)
T ss_dssp CEETTEECCC---SCCBCCSTTSSCEECTTSTTTTTC
T ss_pred EEECCEEECC---CCcCCCCCCceEEEEeCCCccCCC
Confidence 7899987654 567888887 56653 344443
No 249
>4ecl_A Serine racemase, vantg; antibiotic resistance, vancomycin resistance, center for STR genomics of infectious diseases (csgid); HET: MSE; 2.02A {Enterococcus faecalis}
Probab=23.28 E-value=91 Score=23.15 Aligned_cols=31 Identities=16% Similarity=0.366 Sum_probs=23.3
Q ss_pred eEEEEcCccceecCC--cc--------C-ccCCCCEEEEEec
Q 034276 65 VLVLVNDCDWELSGQ--LD--------T-TLEEKDVVVFIST 95 (99)
Q Consensus 65 v~ilvNg~di~~l~g--~~--------t-~L~dgD~V~i~p~ 95 (99)
--|+|||+.+..++. +| . .++.||+|.||-+
T Consensus 297 ~~v~i~g~~~pivGrv~MD~~~vDvt~~~~~~~Gd~v~l~G~ 338 (374)
T 4ecl_A 297 SYVLIGGRQAPIVGKICMDQLAVDVTDIPNVKTGSIATLIGK 338 (374)
T ss_dssp CEEEETTEEEEEESCCCSSCEEEECTTCSSCCTTCEEEEEEE
T ss_pred eEEEECCEEEEEEChhhhceEEEEcCCCCCCCCCCEEEEEeC
Confidence 579999998887754 11 1 4688999999854
No 250
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7
Probab=23.23 E-value=44 Score=20.64 Aligned_cols=42 Identities=10% Similarity=0.003 Sum_probs=17.7
Q ss_pred CeEEEEEcchHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHHhc--Cccc
Q 034276 1 MQLTLEFGGGLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNL--IKER 51 (99)
Q Consensus 1 M~v~V~f~a~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~~~--~~~~ 51 (99)
|+++++- . +.++.+++++|.. .-...+...++.++.+. |++|
T Consensus 1 M~v~~e~-~------~~~~~l~v~v~~~--~~~~~~~~~~~~~~k~~~ipGFR 44 (112)
T 2d3o_1 1 MAELISK-E------GNKVEFKVSVPAA--EVNRAYDQVWAGLARDVRVPGFR 44 (112)
T ss_dssp ----------------CCEEEEECCCGG--GTHHHHHHHHHHHHTTSCBTTBC
T ss_pred CceEEEc-C------CcEEEEEEEECHH--HHHHHHHHHHHHHHhhCCCCCcC
Confidence 5666543 3 3345567778731 01345566666666554 5554
No 251
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=23.14 E-value=40 Score=21.48 Aligned_cols=31 Identities=13% Similarity=0.101 Sum_probs=21.1
Q ss_pred hHhhhcCCeeEEEEEeCCCCCCCcchHHHHHHHHHH
Q 034276 10 GLELLCDSVKVHNVDVVPPKGSEKLIMKDLLSWVGT 45 (99)
Q Consensus 10 ~l~~~~g~~~~~~vev~~~~~~~~~tv~dll~~L~~ 45 (99)
.+|..+.++....|++- +|.|++|.|.+..+
T Consensus 20 ~ir~hLPNqQrT~V~Vr-----pG~tlrdaL~KaLk 50 (107)
T 1rrb_A 20 TIRVFLPNKQRTVVNVR-----NGMSLHDCLMKALK 50 (107)
T ss_dssp EEEEECTTTCCEEEECC-----TTCBHHHHHHHHHH
T ss_pred eEEEECCCCCeEEEEec-----CCcCHHHHHHHHHH
Confidence 34444444433467877 79999999988765
No 252
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=23.07 E-value=17 Score=21.51 Aligned_cols=32 Identities=9% Similarity=0.219 Sum_probs=19.5
Q ss_pred ccc-ceEEEEcCccceecCCccCcc---CCCCEEEE
Q 034276 61 VRP-GVLVLVNDCDWELSGQLDTTL---EEKDVVVF 92 (99)
Q Consensus 61 l~~-~v~ilvNg~di~~l~g~~t~L---~dgD~V~i 92 (99)
|++ .+++-|||+.+.....+...+ ++|+.|.+
T Consensus 18 L~~GD~I~~InG~~v~~~~~l~~~l~~~~~g~~v~l 53 (91)
T 2kjp_A 18 IEVGDKIISADGKNYQSAEKLIDYISSKKAGDKVTL 53 (91)
T ss_dssp CCSSCEEEEETTBCCSSHHHHHHHHSSCCSSCEECE
T ss_pred CCCCCEEEEECCEECCCHHHHHHHHHcCCCCCEEEE
Confidence 444 788999999986543332222 25666554
No 253
>3g2b_A Coenzyme PQQ synthesis protein D; helix-turn-helix, PQQ biosynthesis, biosynthetic protein; 1.66A {Xanthomonas campestris PV}
Probab=22.78 E-value=44 Score=20.29 Aligned_cols=20 Identities=0% Similarity=0.023 Sum_probs=16.8
Q ss_pred CcchHHHHHHHHHHhcCccc
Q 034276 32 EKLIMKDLLSWVGTNLIKER 51 (99)
Q Consensus 32 ~~~tv~dll~~L~~~~~~~~ 51 (99)
...|+.++++.|+++|+...
T Consensus 54 G~rtv~eIv~~L~~~y~~~~ 73 (95)
T 3g2b_A 54 GTQSLAQIAQTLAAEFDADA 73 (95)
T ss_dssp SSSCHHHHHHHHHHHTTCCH
T ss_pred CCCCHHHHHHHHHHHcCCcH
Confidence 45799999999999998553
No 254
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=22.71 E-value=14 Score=20.91 Aligned_cols=14 Identities=0% Similarity=-0.145 Sum_probs=8.9
Q ss_pred cchHHHHHHHHHHh
Q 034276 33 KLIMKDLLSWVGTN 46 (99)
Q Consensus 33 ~~tv~dll~~L~~~ 46 (99)
..||+++.+++.++
T Consensus 64 ~~Tv~~l~~~i~~~ 77 (82)
T 2ava_A 64 ISTIQQAADVIEGL 77 (82)
T ss_dssp CCSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 45777777766553
No 255
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=22.64 E-value=10 Score=21.38 Aligned_cols=13 Identities=8% Similarity=0.317 Sum_probs=7.6
Q ss_pred cchHHHHHHHHHH
Q 034276 33 KLIMKDLLSWVGT 45 (99)
Q Consensus 33 ~~tv~dll~~L~~ 45 (99)
..||+++.+++.+
T Consensus 66 ~~Tv~~l~~~i~~ 78 (81)
T 2lol_A 66 IKTVSDVIKYIKE 78 (81)
T ss_dssp SSSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 3466666666654
No 256
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=22.45 E-value=18 Score=26.98 Aligned_cols=64 Identities=14% Similarity=0.138 Sum_probs=0.0
Q ss_pred EEEEEeCCCCCCCcchHHHHHHHHHHhcCcccccccccCCccccceEEEEcCccceecC-CccCccCCCCEEEEEecCCC
Q 034276 20 VHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSG-QLDTTLEEKDVVVFISTLHG 98 (99)
Q Consensus 20 ~~~vev~~~~~~~~~tv~dll~~L~~~~~~~~~~l~~~~g~l~~~v~ilvNg~di~~l~-g~~t~L~dgD~V~i~p~v~G 98 (99)
++.+.+. ...+++-|.++.+++..-.. ..+..+-||+.|..-+ -.+..+++||.|.+++---|
T Consensus 41 ~~~~~i~-----~~~~~~~l~~~y~~~~g~~~-----------~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~g 104 (389)
T 4da1_A 41 EIFFKIK-----KTTPLRRLMEAFAKRQGKEM-----------DSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIG 104 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEC-----CCChHHHHHHHHHHHhCCCc-----------ceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecccc
Confidence 3456666 45678888887777653211 1344556777665332 22336899999999887666
Q ss_pred C
Q 034276 99 G 99 (99)
Q Consensus 99 G 99 (99)
|
T Consensus 105 g 105 (389)
T 4da1_A 105 G 105 (389)
T ss_dssp -
T ss_pred c
Confidence 5
No 257
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=21.86 E-value=7.7 Score=23.54 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=19.2
Q ss_pred ccc-ceEEEEcCccceecCCccCccCCCCEE
Q 034276 61 VRP-GVLVLVNDCDWELSGQLDTTLEEKDVV 90 (99)
Q Consensus 61 l~~-~v~ilvNg~di~~l~g~~t~L~dgD~V 90 (99)
|++ .+++-|||+.+.........++.|+.|
T Consensus 53 l~~GD~I~~ing~~v~~~~~~~~~l~~g~~v 83 (112)
T 2p3w_A 53 IQDGDIIVKVNGRPLVDSSELQEAVLTESPL 83 (112)
T ss_dssp CCTTCEEEEETTEECCSHHHHHHHHHHCSSE
T ss_pred CCCCCEEEEECCEECCCHHHHHHHHhCCCeE
Confidence 444 788999999987654444344455543
No 258
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=21.76 E-value=1.2e+02 Score=20.11 Aligned_cols=18 Identities=17% Similarity=0.254 Sum_probs=14.9
Q ss_pred CCccCccCCCCEEEEEec
Q 034276 78 GQLDTTLEEKDVVVFIST 95 (99)
Q Consensus 78 ~g~~t~L~dgD~V~i~p~ 95 (99)
...+|+|++||.+.++-+
T Consensus 200 p~~~~~l~~GD~l~v~g~ 217 (234)
T 2aef_A 200 PPRDYSFRAGDIILGIGK 217 (234)
T ss_dssp CCTTCBCCTTCEEEEEEC
T ss_pred CCCCCEECCCCEEEEEEC
Confidence 467899999999998753
No 259
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=21.67 E-value=19 Score=26.27 Aligned_cols=24 Identities=21% Similarity=0.147 Sum_probs=0.0
Q ss_pred EEEcCccceecCCccCccCCCCEEEEE
Q 034276 67 VLVNDCDWELSGQLDTTLEEKDVVVFI 93 (99)
Q Consensus 67 ilvNg~di~~l~g~~t~L~dgD~V~i~ 93 (99)
|.|||+.+. ..+++|++||.|.+.
T Consensus 44 V~VNG~~v~---~~~~~v~~gD~I~v~ 67 (325)
T 1v9f_A 44 VLVNGKVCD---KPKEKVLGGEQVAIN 67 (325)
T ss_dssp ---------------------------
T ss_pred EEECCEEcc---CCCCEeCCCCEEEEe
Confidence 778998743 246899999999885
No 260
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A 1xgo_A 1wkm_A 2dfi_A
Probab=21.56 E-value=2e+02 Score=20.43 Aligned_cols=28 Identities=21% Similarity=0.171 Sum_probs=19.2
Q ss_pred eEEEEcCccceecCC--ccCccCCCCEEEE
Q 034276 65 VLVLVNDCDWELSGQ--LDTTLEEKDVVVF 92 (99)
Q Consensus 65 v~ilvNg~di~~l~g--~~t~L~dgD~V~i 92 (99)
.++-+|..-...... .+.+|++||.|.|
T Consensus 52 ~~vs~n~~~~H~~p~~~~~~~L~~GDiv~i 81 (295)
T 1xgs_A 52 VNLSINEIAAHYTPYKGDTTVLKEGDYLKI 81 (295)
T ss_dssp CEEEETTEEECCCCCTTCCCBCCTTCEEEE
T ss_pred cEEeeCCccccccCCCCCCccccCCCEEEE
Confidence 456778775443332 3679999999876
No 261
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=21.20 E-value=3e+02 Score=22.15 Aligned_cols=24 Identities=4% Similarity=0.037 Sum_probs=19.5
Q ss_pred EEEEEeCCCCCCCcchHHHHHHHHHHhcC
Q 034276 20 VHNVDVVPPKGSEKLIMKDLLSWVGTNLI 48 (99)
Q Consensus 20 ~~~vev~~~~~~~~~tv~dll~~L~~~~~ 48 (99)
..++++. ..+|++|+++.++++..
T Consensus 275 ~~~~~vd-----s~Tt~~ell~~V~~~Lg 298 (655)
T 3pvl_A 275 TKTLLTD-----SATTARELCNALADKIS 298 (655)
T ss_dssp EEEEEEC-----TTCBHHHHHHHHHHHTT
T ss_pred eEEEEEc-----cCCcHHHHHHHHHHHcC
Confidence 3467777 67999999999999764
No 262
>3d37_A Tail protein, 43 kDa; structural genomics, PSI, MCSG, protein struct initiative, midwest center for structural genomics, unknown; 2.10A {Neisseria meningitidis MC58} SCOP: b.106.1.1 b.106.1.1
Probab=21.15 E-value=43 Score=24.86 Aligned_cols=64 Identities=9% Similarity=0.073 Sum_probs=37.5
Q ss_pred CcchHHHHHHHHHHhcCccccc-ccccCCccccceEEEEcCccceec------CCccCccCCCCEEEEEec
Q 034276 32 EKLIMKDLLSWVGTNLIKERPE-MFMKGDSVRPGVLVLVNDCDWELS------GQLDTTLEEKDVVVFIST 95 (99)
Q Consensus 32 ~~~tv~dll~~L~~~~~~~~~~-l~~~~g~l~~~v~ilvNg~di~~l------~g~~t~L~dgD~V~i~p~ 95 (99)
++.|+.++++.|+..|..+... +-.+.+...+.+.+-.|..||++| .|.-..+..+..+.|.+|
T Consensus 109 ~~~Tl~~Iv~~Ia~~~G~L~~~~v~~~~~~~~~~~~~q~~ESd~~fL~rlA~~~g~~~~v~~~G~L~f~~~ 179 (381)
T 3d37_A 109 KGMTVLDAAKKLAAPWPQIKAVVLKAENNPALGKIDIEPGETVWQALTHIANSVGLHPWLEPDGTLVVGGA 179 (381)
T ss_dssp BTSBHHHHHHHHHTTCTTSCCEEEESSCCCBBCCCCCCTTCBHHHHHHHHHHHTTCEEEECTTSCEEEECC
T ss_pred cCCCHHHHHHHHHHhcCCceEEeeccCCCCccceEEeeCCCCHHHHHHHHHHHCCCEEEECCCCeEEEeCC
Confidence 4789999999999988523222 211223333444444588888887 233333323346777766
No 263
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=21.15 E-value=69 Score=17.83 Aligned_cols=27 Identities=7% Similarity=-0.098 Sum_probs=16.0
Q ss_pred EEEEcCccceecCCccCccCCCCEEEE
Q 034276 66 LVLVNDCDWELSGQLDTTLEEKDVVVF 92 (99)
Q Consensus 66 ~ilvNg~di~~l~g~~t~L~dgD~V~i 92 (99)
...+.|+=.-..++....|++||.+.|
T Consensus 53 ~~v~~G~~~~~~~~~~~~l~~Gd~~~i 79 (105)
T 1v70_A 53 YYALEGEVVVRVGEEEALLAPGMAAFA 79 (105)
T ss_dssp EEEEESCEEEEETTEEEEECTTCEEEE
T ss_pred EEEEeCEEEEEECCEEEEeCCCCEEEE
Confidence 344445433334555678899987754
No 264
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=21.01 E-value=12 Score=21.05 Aligned_cols=13 Identities=8% Similarity=0.023 Sum_probs=7.0
Q ss_pred cchHHHHHHHHHH
Q 034276 33 KLIMKDLLSWVGT 45 (99)
Q Consensus 33 ~~tv~dll~~L~~ 45 (99)
..||+++.+++.+
T Consensus 67 ~~Tv~~l~~~i~~ 79 (82)
T 2cnr_A 67 LKTVGDATKYILD 79 (82)
T ss_dssp CSBHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 3455555555544
No 265
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=20.71 E-value=47 Score=19.88 Aligned_cols=31 Identities=6% Similarity=0.143 Sum_probs=20.6
Q ss_pred ceEEEEcCccceecCCccCccCCCCEEEEEe
Q 034276 64 GVLVLVNDCDWELSGQLDTTLEEKDVVVFIS 94 (99)
Q Consensus 64 ~v~ilvNg~di~~l~g~~t~L~dgD~V~i~p 94 (99)
-++..+.|+=.-..++....+++||.+.|=|
T Consensus 56 Ei~~v~~G~~~~~i~~~~~~l~~Gd~~~i~~ 86 (128)
T 4i4a_A 56 ELFIVIQGNAIIRINDEDFPVTKGDLIIIPL 86 (128)
T ss_dssp EEEEEEESEEEEEETTEEEEEETTCEEEECT
T ss_pred EEEEEEeCEEEEEECCEEEEECCCcEEEECC
Confidence 3445566665555567777899998876644
No 266
>3vhx_B Kinesin-like protein KIF23; small GTPase, GTP binding, flemming BODY, cytokinesis, cell signaling protein complex; HET: GTP; 2.81A {Homo sapiens}
Probab=20.65 E-value=15 Score=23.99 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=15.2
Q ss_pred ecCCccCccCCCCEEEEEecCCCC
Q 034276 76 LSGQLDTTLEEKDVVVFISTLHGG 99 (99)
Q Consensus 76 ~l~g~~t~L~dgD~V~i~p~v~GG 99 (99)
..+..+|+|-.|| +||+.+||
T Consensus 76 sdGeieTkL~KGd---V~~T~gGG 96 (120)
T 3vhx_B 76 SDGEIETKLIKGD---IYKTRGGG 96 (120)
T ss_dssp TTSCEEEEEEEEE---EEECTTSC
T ss_pred CCCcEEEEEEEee---EEeecCCc
Confidence 3455678887777 67888887
No 267
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=20.01 E-value=29 Score=20.96 Aligned_cols=32 Identities=9% Similarity=0.104 Sum_probs=20.6
Q ss_pred ccc-ceEEEEcCccceecCCccCc---cCCCCEEEE
Q 034276 61 VRP-GVLVLVNDCDWELSGQLDTT---LEEKDVVVF 92 (99)
Q Consensus 61 l~~-~v~ilvNg~di~~l~g~~t~---L~dgD~V~i 92 (99)
|++ .+++-|||+++......+.. .+.|+.|.+
T Consensus 60 L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l 95 (117)
T 1uit_A 60 LEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITI 95 (117)
T ss_dssp CCTTCEECEETTEETTTCCHHHHHHHTTSCCSEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence 443 78899999988765433322 256787665
Done!