Query 034277
Match_columns 99
No_of_seqs 108 out of 125
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 11:42:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034277.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034277hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11421 Synthase_beta: ATP sy 11.9 3.2E+02 0.007 17.2 2.8 13 14-26 8-20 (49)
2 PF15249 GLTSCR1: Glioma tumor 10.4 91 0.002 21.3 0.0 10 61-70 27-36 (109)
3 PF00023 Ank: Ankyrin repeat H 10.3 1.4E+02 0.0031 15.4 0.8 10 65-74 3-12 (33)
4 KOG0171 Mitochondrial inner me 8.5 1.3E+02 0.0029 23.3 0.3 16 82-97 133-148 (176)
5 PF08168 NUC205: NUC205 domain 6.6 1.5E+02 0.0033 18.3 -0.2 10 60-69 26-36 (44)
6 PF13606 Ank_3: Ankyrin repeat 6.5 2.6E+02 0.0057 14.6 0.8 9 66-74 4-12 (30)
7 PF15207 TMEM240: TMEM240 fami 5.4 2.8E+02 0.0061 21.4 0.6 29 67-95 110-138 (180)
8 PF13857 Ank_5: Ankyrin repeat 5.2 3.4E+02 0.0074 15.7 0.8 13 64-76 16-28 (56)
9 COG3535 Uncharacterized conser 4.7 3.2E+02 0.0069 23.4 0.6 14 55-68 100-113 (357)
10 PF01265 Cyto_heme_lyase: Cyto 4.0 3.1E+02 0.0067 22.3 -0.0 14 59-72 135-148 (259)
No 1
>PF11421 Synthase_beta: ATP synthase F1 beta subunit; InterPro: IPR020971 F-type ATPases have 2 components, CF1 - the catalytic core - and CF0 - the membrane proton channel. CF1 has five subunits: alpha3, beta3, gamma1, delta1, epsilon1. CF0 has three main subunits: a, b and c. This entry represents the beta subunit of the F1 component. The NMR solution structure of the protein in SDS micelles was found to contain two helices, an N-terminal amphipathic alpha-helix and a C-terminal alpha-helix separated by a large unstructured internal domain. The N-terminal alpha-helix is the Tom20 receptor binding site whereas the C-terminal alpha-helix is located upstream of the mitochondrial processing peptidase cleavage site [].; GO: 0005524 ATP binding, 0016887 ATPase activity, 0006200 ATP catabolic process, 0006754 ATP biosynthetic process, 0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1); PDB: 1PYV_A.
Probab=11.90 E-value=3.2e+02 Score=17.19 Aligned_cols=13 Identities=31% Similarity=0.314 Sum_probs=8.4
Q ss_pred hHhhHHhhhcCCC
Q 034277 14 LSSIKSAFRSNAP 26 (99)
Q Consensus 14 ~Ss~rSa~r~~~~ 26 (99)
.|.+|++.+....
T Consensus 8 SSlLRSssrr~~s 20 (49)
T PF11421_consen 8 SSLLRSSSRRSAS 20 (49)
T ss_dssp HHHHHHHHTTSSS
T ss_pred HHHHHHHhccccc
Confidence 5677777766544
No 2
>PF15249 GLTSCR1: Glioma tumor suppressor candidate region
Probab=10.43 E-value=91 Score=21.35 Aligned_cols=10 Identities=40% Similarity=0.757 Sum_probs=8.4
Q ss_pred hhcccchhHH
Q 034277 61 CAQSLLPLHS 70 (99)
Q Consensus 61 ~~~SllPLHs 70 (99)
.++-|||||-
T Consensus 27 A~~RLLPYHv 36 (109)
T PF15249_consen 27 AVERLLPYHV 36 (109)
T ss_pred HHHHhcchhh
Confidence 6788999995
No 3
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=10.29 E-value=1.4e+02 Score=15.36 Aligned_cols=10 Identities=30% Similarity=0.361 Sum_probs=7.2
Q ss_pred cchhHHHHHH
Q 034277 65 LLPLHSVVAA 74 (99)
Q Consensus 65 llPLHsavAs 74 (99)
.-|||.|+-.
T Consensus 3 ~TpLh~A~~~ 12 (33)
T PF00023_consen 3 NTPLHYAAQR 12 (33)
T ss_dssp BBHHHHHHHT
T ss_pred ccHHHHHHHH
Confidence 3589988754
No 4
>KOG0171 consensus Mitochondrial inner membrane protease, subunit IMP1 [Posttranslational modification, protein turnover, chaperones]
Probab=8.51 E-value=1.3e+02 Score=23.30 Aligned_cols=16 Identities=25% Similarity=0.196 Sum_probs=13.2
Q ss_pred cccccccccccccccC
Q 034277 82 SAASKSCRALSQDGID 97 (99)
Q Consensus 82 s~~~rs~~~Lsqg~~~ 97 (99)
+.|+|.|+-||.|.+.
T Consensus 133 S~DSr~yGplP~glI~ 148 (176)
T KOG0171|consen 133 SLDSRNYGPLPMGLIQ 148 (176)
T ss_pred cccccccCCCchhhee
Confidence 5788999999988764
No 5
>PF08168 NUC205: NUC205 domain; InterPro: IPR012584 This domain is found in a novel family of nucleolar proteins [].; GO: 0005634 nucleus
Probab=6.60 E-value=1.5e+02 Score=18.25 Aligned_cols=10 Identities=40% Similarity=1.202 Sum_probs=7.6
Q ss_pred hh-hcccchhH
Q 034277 60 GC-AQSLLPLH 69 (99)
Q Consensus 60 g~-~~SllPLH 69 (99)
|| .|+++|+|
T Consensus 26 GCiyetlip~~ 36 (44)
T PF08168_consen 26 GCIYETLIPIS 36 (44)
T ss_pred Cceeeeecccc
Confidence 56 67899886
No 6
>PF13606 Ank_3: Ankyrin repeat
Probab=6.51 E-value=2.6e+02 Score=14.61 Aligned_cols=9 Identities=33% Similarity=0.564 Sum_probs=6.8
Q ss_pred chhHHHHHH
Q 034277 66 LPLHSVVAA 74 (99)
Q Consensus 66 lPLHsavAs 74 (99)
-|||.|+..
T Consensus 4 T~Lh~A~~~ 12 (30)
T PF13606_consen 4 TPLHLAASN 12 (30)
T ss_pred CHHHHHHHh
Confidence 489988755
No 7
>PF15207 TMEM240: TMEM240 family
Probab=5.43 E-value=2.8e+02 Score=21.40 Aligned_cols=29 Identities=24% Similarity=0.112 Sum_probs=19.6
Q ss_pred hhHHHHHHHHhhccccccccccccccccc
Q 034277 67 PLHSVVAAARMTSCLSAASKSCRALSQDG 95 (99)
Q Consensus 67 PLHsavAsArltS~Ls~~~rs~~~Lsqg~ 95 (99)
-||.||-.=|-.-+..--=++|.|||+-.
T Consensus 110 ~lhcavr~wr~sr~yd~vw~sw~w~pk~c 138 (180)
T PF15207_consen 110 VLHCAVRAWRASRRYDNVWRSWSWLPKFC 138 (180)
T ss_pred HHHHHHHHHHhhcccCCCccchhhhhhhc
Confidence 58999876654444443347999999744
No 8
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=5.18 E-value=3.4e+02 Score=15.65 Aligned_cols=13 Identities=23% Similarity=0.230 Sum_probs=7.8
Q ss_pred ccchhHHHHHHHH
Q 034277 64 SLLPLHSVVAAAR 76 (99)
Q Consensus 64 SllPLHsavAsAr 76 (99)
-..|||-|+....
T Consensus 16 G~T~LH~A~~~g~ 28 (56)
T PF13857_consen 16 GNTPLHWAARYGH 28 (56)
T ss_dssp S--HHHHHHHHT-
T ss_pred CCcHHHHHHHcCc
Confidence 3469999987543
No 9
>COG3535 Uncharacterized conserved protein [Function unknown]
Probab=4.72 E-value=3.2e+02 Score=23.43 Aligned_cols=14 Identities=43% Similarity=0.674 Sum_probs=12.3
Q ss_pred cchhhhhhcccchh
Q 034277 55 SPSELGCAQSLLPL 68 (99)
Q Consensus 55 ~~~elg~~~SllPL 68 (99)
.+.|.|.+-||+||
T Consensus 100 ~s~EiGG~Ns~ip~ 113 (357)
T COG3535 100 ISIEIGGINSLIPL 113 (357)
T ss_pred EEeecCCcchhHHH
Confidence 46789999999999
No 10
>PF01265 Cyto_heme_lyase: Cytochrome c/c1 heme lyase; InterPro: IPR000511 Cytochrome c haem-lyase (CCHL) (4.4.1.17 from EC) and cytochrome Cc1 haem-lyase (CC1HL) [] are mitochondrial enzymes that catalyse the covalent attachment of a haem group on two cysteine residues of cytochrome c and c1. These two enzymes are functionally and evolutionary related. There are two conserved regions, the first is located in the central section and the second in the C-terminal section. Both patterns contain conserved histidine, tryptophan and acidic residues which could be important for the interaction of the enzymes with the apoproteins and/or the haem group.; GO: 0004408 holocytochrome-c synthase activity, 0005739 mitochondrion
Probab=4.00 E-value=3.1e+02 Score=22.27 Aligned_cols=14 Identities=21% Similarity=0.479 Sum_probs=11.1
Q ss_pred hhhhcccchhHHHH
Q 034277 59 LGCAQSLLPLHSVV 72 (99)
Q Consensus 59 lg~~~SllPLHsav 72 (99)
-.-+++++|.|++|
T Consensus 135 ~~dm~~vV~IHN~v 148 (259)
T PF01265_consen 135 EEDMETVVPIHNAV 148 (259)
T ss_pred HHHHHHHHHHhhhh
Confidence 34578999999987
Done!