Query 034277
Match_columns 99
No_of_seqs 108 out of 125
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 20:10:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034277.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034277hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1p65_A Nucleocapsid protein; v 2.9 5.7E+02 0.019 16.2 1.4 20 61-80 51-70 (73)
2 1b12_A Signal peptidase I; ser 2.8 2.5E+02 0.0084 20.2 -0.6 15 82-96 203-217 (248)
3 1n0q_A 3ANK, 3 ankyrin repeats 2.7 4.6E+02 0.016 14.4 0.8 10 65-74 36-45 (93)
4 3brv_A Inhibitor of nuclear fa 2.4 4.7E+02 0.016 15.2 0.4 8 87-94 41-48 (48)
5 3aaa_C Myotrophin, protein V-1 2.2 5.9E+02 0.02 14.7 0.8 11 64-74 73-83 (123)
6 2vda_B Maltoporin; sugar trans 2.2 8.4E+02 0.029 12.7 1.2 12 66-77 11-22 (28)
7 1mkh_A Metrs;, C-terminal doma 2.2 4.4E+02 0.015 17.0 0.1 13 86-98 72-84 (107)
8 2cwp_A Metrs related protein; 2.1 4.9E+02 0.017 17.0 0.3 13 86-98 76-88 (112)
9 1pyb_A Methionyl-tRNA syntheta 2.0 4.5E+02 0.015 17.1 -0.1 13 86-98 76-88 (111)
10 1t0c_A Insulin; type I beta-tu 2.0 5.9E+02 0.02 13.6 0.4 12 57-68 10-24 (31)
No 1
>1p65_A Nucleocapsid protein; viral protein; 2.60A {Porcine respiratory and reproductive svirus} SCOP: d.254.1.1
Probab=2.92 E-value=5.7e+02 Score=16.24 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=14.3
Q ss_pred hhcccchhHHHHHHHHhhcc
Q 034277 61 CAQSLLPLHSVVAAARMTSC 80 (99)
Q Consensus 61 ~~~SllPLHsavAsArltS~ 80 (99)
-||=|||-|..|=.-|.|+.
T Consensus 51 ~VeFmLP~~hTVRLIrvta~ 70 (73)
T 1p65_A 51 TVEFSLPTHHTVRLIRVTAS 70 (73)
T ss_dssp EEEECCCHHHHHHHHHHC--
T ss_pred EEEEecccceEEEEEEeccC
Confidence 47789999988877766653
No 2
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*
Probab=2.76 E-value=2.5e+02 Score=20.18 Aligned_cols=15 Identities=20% Similarity=0.219 Sum_probs=9.5
Q ss_pred ccccccccccccccc
Q 034277 82 SAASKSCRALSQDGI 96 (99)
Q Consensus 82 s~~~rs~~~Lsqg~~ 96 (99)
+.|+|-||.++++.+
T Consensus 203 S~DSR~~G~Vp~~~I 217 (248)
T 1b12_A 203 SADSRYWGFVPEANL 217 (248)
T ss_dssp CCCHHHHCCEEGGGE
T ss_pred cCCCCcccccCHHHe
Confidence 456677777766543
No 3
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=2.75 E-value=4.6e+02 Score=14.40 Aligned_cols=10 Identities=30% Similarity=0.378 Sum_probs=7.4
Q ss_pred cchhHHHHHH
Q 034277 65 LLPLHSVVAA 74 (99)
Q Consensus 65 llPLHsavAs 74 (99)
.-|||.|+..
T Consensus 36 ~t~L~~A~~~ 45 (93)
T 1n0q_A 36 RTPLHLAARN 45 (93)
T ss_dssp CCHHHHHHHT
T ss_pred CCHHHHHHHc
Confidence 4599998754
No 4
>3brv_A Inhibitor of nuclear factor kappa-B kinase subuni; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Synthetic} PDB: 3brt_A
Probab=2.37 E-value=4.7e+02 Score=15.19 Aligned_cols=8 Identities=13% Similarity=0.110 Sum_probs=3.8
Q ss_pred cccccccc
Q 034277 87 SCRALSQD 94 (99)
Q Consensus 87 s~~~Lsqg 94 (99)
-|.||.+|
T Consensus 41 DwSWL~~~ 48 (48)
T 3brv_A 41 DWSWLQTE 48 (48)
T ss_dssp CCGGGC--
T ss_pred hhhhhccC
Confidence 46666553
No 5
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=2.21 E-value=5.9e+02 Score=14.66 Aligned_cols=11 Identities=36% Similarity=0.440 Sum_probs=8.3
Q ss_pred ccchhHHHHHH
Q 034277 64 SLLPLHSVVAA 74 (99)
Q Consensus 64 SllPLHsavAs 74 (99)
..-|||.|+..
T Consensus 73 g~tpL~~A~~~ 83 (123)
T 3aaa_C 73 HITPLLSAVYE 83 (123)
T ss_dssp SCCHHHHHHHH
T ss_pred CCCHHHHHHHc
Confidence 45799998865
No 6
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=2.16 E-value=8.4e+02 Score=12.75 Aligned_cols=12 Identities=58% Similarity=0.692 Sum_probs=7.4
Q ss_pred chhHHHHHHHHh
Q 034277 66 LPLHSVVAAARM 77 (99)
Q Consensus 66 lPLHsavAsArl 77 (99)
|||--||++.-|
T Consensus 11 lplavav~agv~ 22 (28)
T 2vda_B 11 LPLAVAVAAGVM 22 (28)
T ss_dssp CTHHHHHHHHTT
T ss_pred CchHHHHHHHHh
Confidence 577666665543
No 7
>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta barrel, dimerization domain, ligase; 2.01A {Pyrococcus abyssi} SCOP: b.40.4.4
Probab=2.16 E-value=4.4e+02 Score=16.98 Aligned_cols=13 Identities=23% Similarity=-0.164 Sum_probs=8.7
Q ss_pred cccccccccccCC
Q 034277 86 KSCRALSQDGIDG 98 (99)
Q Consensus 86 rs~~~Lsqg~~~~ 98 (99)
.=.+..|||++|+
T Consensus 72 klrGv~S~GMl~s 84 (107)
T 1mkh_A 72 KLRGIGSQGMLLA 84 (107)
T ss_dssp EC-CCEECCCBCE
T ss_pred EEcCeeeccEEEE
Confidence 3456788888874
No 8
>2cwp_A Metrs related protein; structural GEN riken structural genomics/proteomics initiative, RSGI; 2.10A {Pyrococcus horikoshii}
Probab=2.15 E-value=4.9e+02 Score=16.97 Aligned_cols=13 Identities=23% Similarity=-0.179 Sum_probs=9.0
Q ss_pred cccccccccccCC
Q 034277 86 KSCRALSQDGIDG 98 (99)
Q Consensus 86 rs~~~Lsqg~~~~ 98 (99)
.=.+..|||++|+
T Consensus 76 klrGv~S~GMl~s 88 (112)
T 2cwp_A 76 KFSGVESQGMLIL 88 (112)
T ss_dssp EETTEEECSEECC
T ss_pred eeCCEecccEEEE
Confidence 3456778888775
No 9
>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide, oligosaccharide-binding fold, OB-fold, beta-barrel, RNA binding protein; 2.50A {Aquifex aeolicus} SCOP: b.40.4.4
Probab=1.99 E-value=4.5e+02 Score=17.07 Aligned_cols=13 Identities=31% Similarity=-0.049 Sum_probs=9.2
Q ss_pred cccccccccccCC
Q 034277 86 KSCRALSQDGIDG 98 (99)
Q Consensus 86 rs~~~Lsqg~~~~ 98 (99)
.=.+..|||++|+
T Consensus 76 klrGv~S~GMl~s 88 (111)
T 1pyb_A 76 KIFGIESQGMILA 88 (111)
T ss_dssp CTTSCCBSSEECE
T ss_pred EEccEeeccEEEE
Confidence 3457788988774
No 10
>1t0c_A Insulin; type I beta-turn, BEND, type III' beta-turn, hormone/growth factor complex; NMR {Homo sapiens}
Probab=1.97 E-value=5.9e+02 Score=13.61 Aligned_cols=12 Identities=67% Similarity=0.800 Sum_probs=0.0
Q ss_pred hhhh---hhcccchh
Q 034277 57 SELG---CAQSLLPL 68 (99)
Q Consensus 57 ~elg---~~~SllPL 68 (99)
+||| ..-||.||
T Consensus 10 velgggpgagslqpl 24 (31)
T 1t0c_A 10 VELGGGPGAGSLQPL 24 (31)
T ss_dssp TSCCCSTTSSSCSGG
T ss_pred EEecCCCCcccccce
Done!