Query 034277
Match_columns 99
No_of_seqs 108 out of 125
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 20:10:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034277.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034277hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1n11a_ d.211.1.1 (A:) Ankyrin 6.0 89 0.0065 20.3 1.1 10 65-74 1-10 (408)
2 d1ixva_ d.211.1.1 (A:) 26S pro 5.9 98 0.0071 18.5 1.2 9 66-74 2-10 (229)
3 d1k1aa_ d.211.1.1 (A:) bcl-3 { 4.1 1.4E+02 0.01 16.7 1.0 10 65-74 4-13 (228)
4 d1b12a_ b.87.1.2 (A:) Type 1 s 3.6 84 0.0062 20.3 -0.6 15 82-96 202-216 (247)
5 d2o3aa1 c.116.1.8 (A:1-167) Un 3.4 65 0.0047 21.9 -1.3 16 75-90 16-31 (167)
6 d1p65a_ d.254.1.1 (A:) Arteriv 3.1 2.6E+02 0.019 15.6 1.4 16 61-76 40-55 (57)
7 d1myoa_ d.211.1.1 (A:) Myotrop 2.6 2.3E+02 0.017 15.6 0.8 12 63-74 67-78 (118)
8 d2o3ia1 e.73.1.1 (A:2-390) Hyp 2.4 2.1E+02 0.015 20.8 0.5 37 55-95 104-144 (389)
9 d1iknd_ d.211.1.1 (D:) I-kappa 2.4 2.7E+02 0.02 16.5 1.0 12 63-74 38-49 (221)
10 d1mkha_ b.40.4.4 (A:) C-termin 2.4 1.9E+02 0.014 17.2 0.1 11 88-98 74-84 (107)
No 1
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.02 E-value=89 Score=20.35 Aligned_cols=10 Identities=40% Similarity=0.514 Sum_probs=6.4
Q ss_pred cchhHHHHHH
Q 034277 65 LLPLHSVVAA 74 (99)
Q Consensus 65 llPLHsavAs 74 (99)
|.|||.|+..
T Consensus 1 ~TpL~~Aa~~ 10 (408)
T d1n11a_ 1 LTPLHVASFM 10 (408)
T ss_dssp CCHHHHHHHH
T ss_pred CChHHHHHHC
Confidence 4577777654
No 2
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.90 E-value=98 Score=18.47 Aligned_cols=9 Identities=33% Similarity=0.637 Sum_probs=6.2
Q ss_pred chhHHHHHH
Q 034277 66 LPLHSVVAA 74 (99)
Q Consensus 66 lPLHsavAs 74 (99)
.|||.|+..
T Consensus 2 ~pLh~A~~~ 10 (229)
T d1ixva_ 2 YPLHQACME 10 (229)
T ss_dssp CHHHHHHHH
T ss_pred HhHHHHHHc
Confidence 377777765
No 3
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.11 E-value=1.4e+02 Score=16.70 Aligned_cols=10 Identities=40% Similarity=0.464 Sum_probs=7.4
Q ss_pred cchhHHHHHH
Q 034277 65 LLPLHSVVAA 74 (99)
Q Consensus 65 llPLHsavAs 74 (99)
.-|||.|+..
T Consensus 4 ~TpLh~A~~~ 13 (228)
T d1k1aa_ 4 DTPLHIAVVQ 13 (228)
T ss_dssp CCHHHHHHHT
T ss_pred ccHHHHHHHc
Confidence 4589988764
No 4
>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli [TaxId: 562]}
Probab=3.55 E-value=84 Score=20.33 Aligned_cols=15 Identities=20% Similarity=0.219 Sum_probs=9.6
Q ss_pred ccccccccccccccc
Q 034277 82 SAASKSCRALSQDGI 96 (99)
Q Consensus 82 s~~~rs~~~Lsqg~~ 96 (99)
+.|+|-||-++++.+
T Consensus 202 S~DSR~wG~Vp~~~I 216 (247)
T d1b12a_ 202 SADSRYWGFVPEANL 216 (247)
T ss_dssp CCCHHHHCCEEGGGE
T ss_pred CccccccCcCCHHHe
Confidence 566677776666543
No 5
>d2o3aa1 c.116.1.8 (A:1-167) Uncharacterized protein AF0751 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=3.37 E-value=65 Score=21.94 Aligned_cols=16 Identities=13% Similarity=0.341 Sum_probs=13.3
Q ss_pred HHhhcccccccccccc
Q 034277 75 ARMTSCLSAASKSCRA 90 (99)
Q Consensus 75 ArltS~Ls~~~rs~~~ 90 (99)
-|+|.|++...|++|+
T Consensus 16 ~RiTTHvaLtARAfGA 31 (167)
T d2o3aa1 16 KRISTHVALTARAFGA 31 (167)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred cchhhHHHHHHHHhcC
Confidence 3789999988888886
No 6
>d1p65a_ d.254.1.1 (A:) Arterivirus nucleocapsid protein {PRRSV (Porcine reproductive and respiratory syndrome virus) [TaxId: 28344]}
Probab=3.08 E-value=2.6e+02 Score=15.62 Aligned_cols=16 Identities=31% Similarity=0.376 Sum_probs=11.4
Q ss_pred hhcccchhHHHHHHHH
Q 034277 61 CAQSLLPLHSVVAAAR 76 (99)
Q Consensus 61 ~~~SllPLHsavAsAr 76 (99)
-||=|||-|..|=.-|
T Consensus 40 ~VeFmLP~~hTVRLIr 55 (57)
T d1p65a_ 40 TVEFSLPTHHTVRLIR 55 (57)
T ss_dssp EEEECCCHHHHHHHHH
T ss_pred EEEEEcccceEEEEEe
Confidence 4778899988775433
No 7
>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=2.56 E-value=2.3e+02 Score=15.61 Aligned_cols=12 Identities=33% Similarity=0.437 Sum_probs=8.6
Q ss_pred cccchhHHHHHH
Q 034277 63 QSLLPLHSVVAA 74 (99)
Q Consensus 63 ~SllPLHsavAs 74 (99)
+..-|||.|+..
T Consensus 67 ~g~tpLh~A~~~ 78 (118)
T d1myoa_ 67 HHITPLLSAVYE 78 (118)
T ss_dssp SCSCHHHHHHTT
T ss_pred ccccchhhhhhc
Confidence 346799998754
No 8
>d2o3ia1 e.73.1.1 (A:2-390) Hypothetical protein CV3147 {Chromobacterium violaceum [TaxId: 536]}
Probab=2.42 E-value=2.1e+02 Score=20.80 Aligned_cols=37 Identities=14% Similarity=0.157 Sum_probs=22.4
Q ss_pred cchhhhhhcccchhHHHHHHHHhhccccccc----cccccccccc
Q 034277 55 SPSELGCAQSLLPLHSVVAAARMTSCLSAAS----KSCRALSQDG 95 (99)
Q Consensus 55 ~~~elg~~~SllPLHsavAsArltS~Ls~~~----rs~~~Lsqg~ 95 (99)
.+.|.|.+-+|+|| +++|++ ..--||. |++=+|.|.+
T Consensus 104 ~~~EiGG~Ns~~pl---~~AA~~-glPvVDaD~mGRAfPelqm~t 144 (389)
T d2o3ia1 104 VAPESGALGFVVAS---LVAAKL-GLAVVDADGAGRAVPSLPMLT 144 (389)
T ss_dssp ECSSSSHHHHHHHH---HHHHHH-TCEEESBCSSSSCCSSGGGSH
T ss_pred EeeccCCccHHHHH---HHHHHh-CCCEEcCCCccccCCchhhee
Confidence 56789999999998 333333 3333443 5555555543
No 9
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.36 E-value=2.7e+02 Score=16.50 Aligned_cols=12 Identities=33% Similarity=0.404 Sum_probs=9.0
Q ss_pred cccchhHHHHHH
Q 034277 63 QSLLPLHSVVAA 74 (99)
Q Consensus 63 ~SllPLHsavAs 74 (99)
+..-|||.|+..
T Consensus 38 ~g~TpLh~A~~~ 49 (221)
T d1iknd_ 38 LQQTPLHLAVIT 49 (221)
T ss_dssp TCCCHHHHHHHT
T ss_pred CCCccccccccc
Confidence 345699999875
No 10
>d1mkha_ b.40.4.4 (A:) C-terminal domain of methionyl-tRNA synthetase, MetRS-CD {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Probab=2.36 E-value=1.9e+02 Score=17.17 Aligned_cols=11 Identities=18% Similarity=-0.227 Sum_probs=7.5
Q ss_pred cccccccccCC
Q 034277 88 CRALSQDGIDG 98 (99)
Q Consensus 88 ~~~Lsqg~~~~ 98 (99)
-|..|||++|+
T Consensus 74 rGv~SeGMl~s 84 (107)
T d1mkha_ 74 RGIGSQGMLLA 84 (107)
T ss_dssp -CCEECCCBCE
T ss_pred CCccCCEEEEE
Confidence 47788888764
Done!