BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034278
(99 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F3C|A Chain A, Refined Solution Structure Of 8kda Dynein Light Chain
(Dlc8)
pdb|1F3C|B Chain B, Refined Solution Structure Of 8kda Dynein Light Chain
(Dlc8)
pdb|1F95|A Chain A, Solution Structure Of Dynein Light Chain 8 (Dlc8) And
Bim Peptide Complex
pdb|1F95|B Chain B, Solution Structure Of Dynein Light Chain 8 (Dlc8) And
Bim Peptide Complex
pdb|1F96|A Chain A, Solution Structure Of Dynein Light Chain 8 (Dlc8) And
Nnos Peptide Complex
pdb|1F96|B Chain B, Solution Structure Of Dynein Light Chain 8 (Dlc8) And
Nnos Peptide Complex
Length = 89
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 59/90 (65%), Gaps = 2/90 (2%)
Query: 1 MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
M + KA+I++ DM +MQ ++ A+QAL+ Y++ K IAAHIKKEFDK+Y W C+V
Sbjct: 1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIE--KDIAAHIKKEFDKKYNPTWHCIV 58
Query: 61 GSNFGCFFTHTEGTFIYFQLETLKFLIFKG 90
G NFG + TH FIYF L + L+FK
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88
>pdb|1CMI|A Chain A, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE
pdb|1CMI|B Chain B, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE
Length = 85
Score = 85.9 bits (211), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 57/86 (66%), Gaps = 2/86 (2%)
Query: 5 KALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVVGSNF 64
KA+I++ DM +MQ ++ A+QAL+ Y++ K IAAHIKKEFDK+Y W C+VG NF
Sbjct: 1 KAVIKNADMSEEMQQDSVECATQALEKYNIE--KDIAAHIKKEFDKKYNPTWHCIVGRNF 58
Query: 65 GCFFTHTEGTFIYFQLETLKFLIFKG 90
G + TH FIYF L + L+FK
Sbjct: 59 GSYVTHETKHFIYFYLGQVAILLFKS 84
>pdb|1RHW|A Chain A, The Solution Structure Of The Ph-Induced Monomer Of
Dynein Light Chain Lc8 From Drosophila
pdb|2P2T|A Chain A, Crystal Structure Of Dynein Light Chain Lc8 Bound To
Residues 123-138 Of Intermediate Chain Ic74
pdb|3E2B|A Chain A, Crystal Structure Of Dynein Light Chain Lc8 In Complex
With A Peptide Derived From Swallow
pdb|3BRI|A Chain A, Crystal Structure Of Apo-Lc8
pdb|3FM7|E Chain E, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
pdb|3FM7|F Chain F, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
pdb|3GLW|A Chain A, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
Length = 89
Score = 85.5 bits (210), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 59/90 (65%), Gaps = 2/90 (2%)
Query: 1 MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
M + KA+I++ DM +MQ A+ A+QAL+ Y++ K IAA+IKKEFDK+Y W C+V
Sbjct: 1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 58
Query: 61 GSNFGCFFTHTEGTFIYFQLETLKFLIFKG 90
G NFG + TH FIYF L + L+FK
Sbjct: 59 GRNFGSYVTHETRHFIYFYLGQVAILLFKS 88
>pdb|2PG1|A Chain A, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|B Chain B, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|C Chain C, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|D Chain D, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|3DVT|A Chain A, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|B Chain B, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|C Chain C, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|D Chain D, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|E Chain E, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|F Chain F, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
Length = 91
Score = 85.5 bits (210), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 59/90 (65%), Gaps = 2/90 (2%)
Query: 1 MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
M + KA+I++ DM +MQ A+ A+QAL+ Y++ K IAA+IKKEFDK+Y W C+V
Sbjct: 3 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 60
Query: 61 GSNFGCFFTHTEGTFIYFQLETLKFLIFKG 90
G NFG + TH FIYF L + L+FK
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFKS 90
>pdb|3BRL|A Chain A, Crystal Structure Of Lc8 S88e SWA
Length = 89
Score = 85.5 bits (210), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 59/89 (66%), Gaps = 2/89 (2%)
Query: 1 MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
M + KA+I++ DM +MQ A+ A+QAL+ Y++ K IAA+IKKEFDK+Y W C+V
Sbjct: 1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 58
Query: 61 GSNFGCFFTHTEGTFIYFQLETLKFLIFK 89
G NFG + TH FIYF L + L+FK
Sbjct: 59 GRNFGSYVTHETRHFIYFYLGQVAILLFK 87
>pdb|1PWJ|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And
Mechanism Of Domain Swapped Dimer Assembly
pdb|2XQQ|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|B Chain B, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|C Chain C, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|D Chain D, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte)
Length = 89
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 58/90 (64%), Gaps = 2/90 (2%)
Query: 1 MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
M + KA+I++ DM MQ A+ A+QA++ Y++ K IAA+IKKEFDK+Y W C+V
Sbjct: 1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 58
Query: 61 GSNFGCFFTHTEGTFIYFQLETLKFLIFKG 90
G NFG + TH FIYF L + L+FK
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88
>pdb|3P8M|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide Dimerized By Leucine Zipper
pdb|3P8M|B Chain B, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide Dimerized By Leucine Zipper
Length = 92
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 58/89 (65%), Gaps = 2/89 (2%)
Query: 1 MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
M + KA+I++ DM MQ A+ A+QA++ Y++ K IAA+IKKEFDK+Y W C+V
Sbjct: 4 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 61
Query: 61 GSNFGCFFTHTEGTFIYFQLETLKFLIFK 89
G NFG + TH FIYF L + L+FK
Sbjct: 62 GRNFGSYVTHETKHFIYFYLGQVAILLFK 90
>pdb|1RE6|A Chain A, Localisation Of Dynein Light Chains 1 And 2 And Their
Pro- Apoptotic Ligands
pdb|1RE6|B Chain B, Localisation Of Dynein Light Chains 1 And 2 And Their
Pro- Apoptotic Ligands
Length = 94
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 58/89 (65%), Gaps = 2/89 (2%)
Query: 1 MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
M + KA+I++ DM MQ A+ A+QA++ Y++ K IAA+IKKEFDK+Y W C+V
Sbjct: 6 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 63
Query: 61 GSNFGCFFTHTEGTFIYFQLETLKFLIFK 89
G NFG + TH FIYF L + L+FK
Sbjct: 64 GRNFGSYVTHETKHFIYFYLGQVAILLFK 92
>pdb|1YO3|A Chain A, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
pdb|1YO3|B Chain B, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
pdb|1YO3|C Chain C, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
Length = 102
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 6 ALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVVGSNFG 65
+++++ DM +MQ+ A+ A+QAL Y+V K IAAHIKKEFD++Y W CVVG NFG
Sbjct: 19 SVVKNVDMTEEMQIDAIDCANQALQKYNVE--KDIAAHIKKEFDRKYDPTWHCVVGRNFG 76
Query: 66 CFFTHTEGTFIYFQLETLKFLIFK 89
+ TH FIYF + + L+FK
Sbjct: 77 SYVTHETKNFIYFYIGQVAILLFK 100
>pdb|3DVH|A Chain A, Lc8 Point Mutant K36p
pdb|3DVH|B Chain B, Lc8 Point Mutant K36p
pdb|3DVH|C Chain C, Lc8 Point Mutant K36p
pdb|3DVP|A Chain A, Pak1 Peptide Bound Lc8
pdb|3DVP|B Chain B, Pak1 Peptide Bound Lc8
Length = 91
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 58/90 (64%), Gaps = 2/90 (2%)
Query: 1 MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
M + KA+I++ DM +MQ A+ A+QAL+ Y++ IAA+IKKEFDK+Y W C+V
Sbjct: 3 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIE--PDIAAYIKKEFDKKYNPTWHCIV 60
Query: 61 GSNFGCFFTHTEGTFIYFQLETLKFLIFKG 90
G NFG + TH FIYF L + L+FK
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFKS 90
>pdb|3RJS|A Chain A, Crystal Structure Of Dynein Light Chain 8a (Dlc8) From
Toxoplasma Gondii At 1.5 A Resolution
Length = 89
Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 58/90 (64%), Gaps = 2/90 (2%)
Query: 1 MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
M + KA+I++ DMP +Q A+ A+QAL+ Y++ K IAA IKKEFD+++ W CVV
Sbjct: 1 MADRKAVIKNADMPEDLQQDAIDCANQALEKYNIE--KDIAAFIKKEFDRKHNPTWHCVV 58
Query: 61 GSNFGCFFTHTEGTFIYFQLETLKFLIFKG 90
G NFG + TH FIYF + + L+FK
Sbjct: 59 GRNFGSYVTHETHHFIYFYIGQVAVLLFKS 88
>pdb|1PWK|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And
Mechanism Of Domain Swapped Dimer Assembly
Length = 91
Score = 79.0 bits (193), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 58/91 (63%), Gaps = 4/91 (4%)
Query: 1 MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
M + KA+I++ DM MQ A+ A+QA++ Y++ K IAA+IKKEFDK+Y W C+V
Sbjct: 1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 58
Query: 61 GS--NFGCFFTHTEGTFIYFQLETLKFLIFK 89
G NFG + TH FIYF L + L+FK
Sbjct: 59 GRSGNFGSYVTHETKHFIYFYLGQVAILLFK 89
>pdb|4DS1|A Chain A, The Structure Of A Yeast Dyn2-Nup159 Complex And The
Molecular Basis For The Dynein Light Chain - Nuclear
Pore Interaction
pdb|4DS1|C Chain C, The Structure Of A Yeast Dyn2-Nup159 Complex And The
Molecular Basis For The Dynein Light Chain - Nuclear
Pore Interaction
Length = 97
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 7 LIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVVGSNFGC 66
+++ +D+ K++ + + ALD Y + + IA +KK+ D +YG W +VG NFG
Sbjct: 15 IVKASDITDKLKEDILTISKDALDKYQL--ERDIAGTVKKQLDVKYGNTWHVIVGKNFGS 72
Query: 67 FFTHTEGTFIYFQLETLKFLIFK 89
+ TH +G F+YF + L FL+FK
Sbjct: 73 YVTHEKGHFVYFYIGPLAFLVFK 95
>pdb|2AFA|A Chain A, Crystal Structure Of Putative Nag Isomerase From
Salmonella Typhimurium
pdb|2AFA|B Chain B, Crystal Structure Of Putative Nag Isomerase From
Salmonella Typhimurium
pdb|2AFA|C Chain C, Crystal Structure Of Putative Nag Isomerase From
Salmonella Typhimurium
pdb|2AFA|D Chain D, Crystal Structure Of Putative Nag Isomerase From
Salmonella Typhimurium
pdb|2AFA|E Chain E, Crystal Structure Of Putative Nag Isomerase From
Salmonella Typhimurium
pdb|2AFA|F Chain F, Crystal Structure Of Putative Nag Isomerase From
Salmonella Typhimurium
Length = 425
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 17 MQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCV 59
+ +Y++A++ YD+ D I A DK+YGG + CV
Sbjct: 59 LHVYSVAASXGRPGAYDLVD-HGIKAXNGALRDKKYGGWYACV 100
>pdb|3SFX|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Tipifarnib
pdb|3SFY|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Ethylenediamine Inhibitor 2
Length = 349
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 7 LIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQ 57
L EDT +PV + L +A + ++ V D + + E+D+ G W+
Sbjct: 292 LPEDTPLPVPLALEYLADS--FIEQNRVDDAAKVFEKLSSEYDQMRAGYWE 340
>pdb|3Q73|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase, Apo
Enzyme
pdb|3Q75|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Tkcvvm Peptide
pdb|3Q78|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fspp And Ddptasacniq Peptide
pdb|3Q79|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Farnesyl-Ddptasacniq Product
pdb|3Q7A|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpp And L-778,123
pdb|3Q7F|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpp And Ethylenediamine Inhibitor 1
Length = 349
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 7 LIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQ 57
L EDT +PV + L +A + ++ V D + + E+D+ G W+
Sbjct: 293 LPEDTPLPVPLALEYLADS--FIEQNRVDDAAKVFEKLSSEYDQMRAGYWE 341
>pdb|3MHK|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
2-(2-
Pyridyl)-7,8-Dihydro-5h-Thiino[4,3-D]pyrimidin-4-Ol
Length = 223
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 53 GGGWQCVVGSNFGCFFTHTEGTFIYFQLET--LKFLIFKGSSSPP 95
GGG C V + C+ H + F L L+F K + SPP
Sbjct: 126 GGGTGCPVHKDRSCYICHRQLLFCRVTLGKSFLQFSAMKMAHSPP 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,009,036
Number of Sequences: 62578
Number of extensions: 108795
Number of successful extensions: 171
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 145
Number of HSP's gapped (non-prelim): 18
length of query: 99
length of database: 14,973,337
effective HSP length: 65
effective length of query: 34
effective length of database: 10,905,767
effective search space: 370796078
effective search space used: 370796078
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)